Commit Graph

4703 Commits

Author SHA1 Message Date
Luc Maisonobe f5765cf99d Use the new differentation API for all optimizers.
The older API is still supported as of version 3.1, but is implemented
by wrapping the user function into the new API and then calling the new
code.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401838 13f79535-47bb-0310-9956-ffa450edef68
2012-10-24 19:40:08 +00:00
Luc Maisonobe 7b5a64c0bb Added converters for multivariate functions.
The converters allow to convert back and forth between the older
and the newer differentiation API. They are considered temporary methods
for version 3.1 and will be removed in 4.0 as only the new API will
remain.

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401837 13f79535-47bb-0310-9956-ffa450edef68
2012-10-24 19:39:45 +00:00
Thomas Neidhart 3bae991455 Added missing closing action tag.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401451 13f79535-47bb-0310-9956-ffa450edef68
2012-10-23 20:35:04 +00:00
Thomas Neidhart 477104bd09 Fix spelling.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401416 13f79535-47bb-0310-9956-ffa450edef68
2012-10-23 19:30:09 +00:00
Sebastien Brisard db51254b40 Reverted changes inadvertently commited in r1401171.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401172 13f79535-47bb-0310-9956-ffa450edef68
2012-10-23 06:08:32 +00:00
Sebastien Brisard 9dffcfd3be Maxima scripts to generate reference values for the gamma and logGamma
functions.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401171 13f79535-47bb-0310-9956-ffa450edef68
2012-10-23 06:04:09 +00:00
Luc Maisonobe 6d5763c539 Removed unused exception.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401034 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 19:32:03 +00:00
Luc Maisonobe 2a9cbbab46 Finalized fix for MATH-880.
This version should be much more robust on polygons computation than the
earlier ones. Note that the hyperplaneThickness parameter is a key
tuning parameter in difficult cases like the one involved in the issue.
As shown in the corresponding unit test, the value had to be raised to
1.0e-8 in order for the test to pass correctly.

JIRA: MATH-880

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401022 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 19:21:36 +00:00
Thomas Neidhart c2e855d6a0 [MATH-759] add resolution to changes.xml.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1401000 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 18:47:33 +00:00
Gilles Sadowski 3b6bbf6d2c Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400881 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 13:57:26 +00:00
Gilles Sadowski 7096dabffa MATH-854
Fill "throw" clauses.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400850 13f79535-47bb-0310-9956-ffa450edef68
2012-10-22 11:57:17 +00:00
Luc Maisonobe b25f448d2f Improved polygons creation with a numerically more robust constructor.
This is only a partial fix for issue 880 because there are still some
glitches in the first polygon involved in the issue.

JIRA: MATH-880

git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400717 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 20:08:32 +00:00
Thomas Neidhart c323480cf6 Added Dan Checkoway as contributor due to his patch for MATH-474.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400687 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 17:44:53 +00:00
Thomas Neidhart 231b9a8905 Fix special characters in changes.xml.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400685 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 17:43:08 +00:00
Thomas Neidhart 1d02ff125d [MATH-474] Added Frequency#merge method, thanks to patch from Dan Checkoway.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400683 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 17:33:37 +00:00
Thomas Neidhart ec6f1c8270 Small fixes of javadoc @throws tags.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400676 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 16:41:38 +00:00
Thomas Neidhart 8bada78845 Removed unneeded import in package-info.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400675 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 16:34:40 +00:00
Thomas Neidhart bea6d09158 Fix checkstyle warnings, added missing javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400673 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 16:32:30 +00:00
Thomas Neidhart 5b9302d5be [MATH-778] Allow unlimited input values for Dfp#multiply.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400671 13f79535-47bb-0310-9956-ffa450edef68
2012-10-21 16:22:50 +00:00
Gilles Sadowski 0912bac520 MATH-868
MATH-879
"lambda" and "inputSigma" should be passed to "optimize" as arguments of
type "OptimizationData". Deprecated constructors. Updated unit tests.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400108 13f79535-47bb-0310-9956-ffa450edef68
2012-10-19 14:20:16 +00:00
Gilles Sadowski ea138c2da2 MATH-816
Mixture model distribution.  Original code contributed by Jared Becksfort,
committed with changes as discussed on the JIRA page.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400040 13f79535-47bb-0310-9956-ffa450edef68
2012-10-19 11:00:53 +00:00
Gilles Sadowski bdd5b45cf7 MATH-815
Added method that was missing in the original commit: "getDimensions()",
renamed to "getDimension()".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400017 13f79535-47bb-0310-9956-ffa450edef68
2012-10-19 09:55:01 +00:00
Gilles Sadowski a355d8c20a MATH-881
Removed useless method.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1400010 13f79535-47bb-0310-9956-ffa450edef68
2012-10-19 09:30:44 +00:00
Gilles Sadowski 4a3a3eba60 MATH-881
Removed meaningless properties for multivariate distributions.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1399864 13f79535-47bb-0310-9956-ffa450edef68
2012-10-18 21:26:13 +00:00
Gilles Sadowski 41f74ba651 Inner class should have been "static".
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1399433 13f79535-47bb-0310-9956-ffa450edef68
2012-10-17 21:09:27 +00:00
Gilles Sadowski 3a874d8f01 Formatting.
"final" keyword.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1398547 13f79535-47bb-0310-9956-ffa450edef68
2012-10-15 22:30:30 +00:00
Gilles Sadowski ecc9690e26 Formatting.
Removed unnecessary decimal point on constants, and added explicit cast where
necessary.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1398297 13f79535-47bb-0310-9956-ffa450edef68
2012-10-15 14:09:32 +00:00
Gilles Sadowski ac094067cf MATH-873
Removed usage of "maximum number of evaluations" in a place where it altered
the algorithm's core behaviour (whereas it should only serve as a processing
time limit).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1398284 13f79535-47bb-0310-9956-ffa450edef68
2012-10-15 13:33:43 +00:00
Gilles Sadowski 91011db79d MATH-872
Sigma values expressed as a kind of "OptimizationData". Deprecated
constructors that were passed an "inputSigma" argument.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1398275 13f79535-47bb-0310-9956-ffa450edef68
2012-10-15 13:12:15 +00:00
Gilles Sadowski 652c6220cb MATH-874
Simple bounds expressed as a kind of "0ptimizationData".
The specification of simple bounds is handled in "BaseAbstractMultivariateOptimizer";
hence "BaseAbstractMultivariateSimpleBoundsOptimizer" is deprecated.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1398263 13f79535-47bb-0310-9956-ffa450edef68
2012-10-15 12:16:53 +00:00
Gilles Sadowski 2b40d7c36b MATH-874
New API allows to pass the simplex as an argument to "optimize".


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1397759 13f79535-47bb-0310-9956-ffa450edef68
2012-10-13 01:12:58 +00:00
Gilles Sadowski 8bc689a30c MATH-874
New "optimize" method.


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1397758 13f79535-47bb-0310-9956-ffa450edef68
2012-10-13 01:09:02 +00:00
Gilles Sadowski 91be760415 Replaced bit operator with logical operator.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1397106 13f79535-47bb-0310-9956-ffa450edef68
2012-10-11 15:18:07 +00:00
Gilles Sadowski d1ea9a6fb7 Javadoc. [After the MATH-867 fix, this warning is obsolete.]
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1395949 13f79535-47bb-0310-9956-ffa450edef68
2012-10-09 10:45:16 +00:00
Luc Maisonobe 4b7c9c9408 Fixed javadoc warnings.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1395937 13f79535-47bb-0310-9956-ffa450edef68
2012-10-09 10:04:36 +00:00
Gilles Sadowski 4907b06568 MATH-876
Changed "<commons.componentid>" property (used in "commons-parent" to create
the "Bundle-SymbolicName" entry in "MANIFEST.MF").


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1395545 13f79535-47bb-0310-9956-ffa450edef68
2012-10-08 13:14:50 +00:00
Sebastien Brisard 37f8de9542 MATH-875: deprecated sparseIterator() in the RealVector hierarchy, and replaced its use with iterator().
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1395455 13f79535-47bb-0310-9956-ffa450edef68
2012-10-08 05:54:21 +00:00
Sebastien Brisard d0e8a3587a MATH-854: FieldMatrix.setSubMatrix does *not* throw NumberIsTooSmallException.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1395453 13f79535-47bb-0310-9956-ffa450edef68
2012-10-08 05:19:50 +00:00
Sebastien Brisard 7cac883ba0 MATH-854: populated throws clause of BlockFieldMatrix.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1395452 13f79535-47bb-0310-9956-ffa450edef68
2012-10-08 05:16:27 +00:00
Gilles Sadowski 3e10f8d478 Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1395181 13f79535-47bb-0310-9956-ffa450edef68
2012-10-06 22:17:12 +00:00
Phil Steitz 3084dd1e4a Made file character set explicit and added file loading tests.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1394882 13f79535-47bb-0310-9956-ffa450edef68
2012-10-06 01:05:06 +00:00
Phil Steitz 288558e48e Removed trailing spaces.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1394763 13f79535-47bb-0310-9956-ffa450edef68
2012-10-05 19:54:00 +00:00
Phil Steitz 955dda0258 Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1394761 13f79535-47bb-0310-9956-ffa450edef68
2012-10-05 19:52:15 +00:00
Gilles Sadowski 52990bc644 Read bound values from base class instead of duplicating the data.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1393978 13f79535-47bb-0310-9956-ffa450edef68
2012-10-04 10:25:42 +00:00
Gilles Sadowski e41cea1e33 Improved Javadoc.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1393641 13f79535-47bb-0310-9956-ffa450edef68
2012-10-03 18:06:33 +00:00
Thomas Neidhart 8eb3bbaca4 Remove trailing spaces, added missing javadoc tags.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1393153 13f79535-47bb-0310-9956-ffa450edef68
2012-10-02 20:15:00 +00:00
Sebastien Brisard 3b5d0dd52c User's guide for special functions now reports accuracy of
Gamma.gamma(double).


git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1392751 13f79535-47bb-0310-9956-ffa450edef68
2012-10-02 06:09:03 +00:00
Sebastien Brisard bb0827cc81 MATH-854: populated throws clause of Array2DRowFieldMatrix.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1392748 13f79535-47bb-0310-9956-ffa450edef68
2012-10-02 05:35:59 +00:00
Sebastien Brisard 72051d7f6d MATH-854: populated throws clause of AbstractFieldMatrix.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1392743 13f79535-47bb-0310-9956-ffa450edef68
2012-10-02 05:21:51 +00:00
Sebastien Brisard 9f663a15e6 MATH-854: populated throws clause of FieldMatrix.
git-svn-id: https://svn.apache.org/repos/asf/commons/proper/math/trunk@1392742 13f79535-47bb-0310-9956-ffa450edef68
2012-10-02 05:14:38 +00:00