Upgrade maven shade plugin to try to fix build failures
Sometimes we get maven shade errors in our integ tests becasue we don't run clean in between runs to clear the cache in order to speed them up. This can lead to the below error.
Error: Failed to execute goal org.apache.maven.plugins:maven-shade-plugin:3.2.4:shade (opentelemetry-extension) on project opentelemetry-emitter: Error creating shaded jar: duplicate entry: META-INF/services/org.apache.druid.opentelemetry.shaded.io.grpc.NameResolverProvider
See: https://issues.apache.org/jira/projects/MSHADE/issues/MSHADE-425?filter=allissues
An example run that failed: https://github.com/apache/druid/actions/runs/6301662092/job/17117142375?pr=14887
According to the ticket this is fixed by updating shade to 3.4.1.
When I updated to 3.4.1 I kept running into a different issue during static checks. (Caused by: java.lang.NoClassDefFoundError: com/github/rvesse/airline/parser/errors/ParseException)
I had to add the createDependencyReducedPom: false to get the build to pass.
The dependency reduced pom feature was added in 3.3.0 which we were not using before so setting it explicitly to false should not be a issue. https://issues.apache.org/jira/browse/MSHADE-36)
* update RoaringBitmap to 0.9.49
update RoaringBitmap from 0.9.0 to 0.9.49
Many optimizations and improvements have gone into recent releases of
RoaringBitmap. It seems worthwhile to incorporate those.
* implement workaround for BatchIterator interface change
* add test case for BatchIteratorAdapter.advanceIfNeeded
Currently Druid is using google apis client 1.26.0 version and google-oauth-client-1.26.0.jar in particular is bringing following CVEs CVE-2020-7692, CVE-2021-22573. Despite the CVEs being false positives, they're causing red security scans on Druid distribution. Hence updating the version to latest version with these CVE fixes.
This patch fixes a few issues toward #14858
1. some phony classes were added to enable maven to track the compilation of those classes
2. cyclonedx 2.7.9 seem to handle incremental compilation better; it had a PR relating to that
3. needed to update root pom to 25
4. update antlr to 4.5.3 older one didn't really worked incrementally; 4.5.3 works much better
Currently, Druid is using Guava 16.0.1 version. This upgrade to 31.1-jre fixes the following issues.
CVE-2018-10237 (Unbounded memory allocation in Google Guava 11.0 through 24.x before 24.1.1 allows remote attackers to conduct denial of service attacks against servers that depend on this library and deserialize attacker-provided data because the AtomicDoubleArray class (when serialized with Java serialization) and the CompoundOrdering class (when serialized with GWT serialization) perform eager allocation without appropriate checks on what a client has sent and whether the data size is reasonable). We don't use Java or GWT serializations. Despite being false positive they're causing red security scans on Druid distribution.
Latest version of google-client-api is incompatible with the existing Guava version. This PR unblocks Update google client apis to latest version #14414
* Add new configurable buffer period to create gap between mark unused and kill of segment
* Changes after testing
* fixes and improvements
* changes after initial self review
* self review changes
* update sql statement that was lacking last_used
* shore up some code in SqlMetadataConnector after self review
* fix derby compatibility and improve testing/docs
* fix checkstyle violations
* Fixes post merge with master
* add some unit tests to improve coverage
* ignore test coverage on new UpdateTools cli tool
* another attempt to ignore UpdateTables in coverage check
* change column name to used_flag_last_updated
* fix a method signature after column name switch
* update docs spelling
* Update spelling dictionary
* Fixing up docs/spelling and integrating altering tasks table with my alteration code
* Update NULL values for used_flag_last_updated in the background
* Remove logic to allow segs with null used_flag_last_updated to be killed regardless of bufferPeriod
* remove unneeded things now that the new column is automatically updated
* Test new background row updater method
* fix broken tests
* fix create table statement
* cleanup DDL formatting
* Revert adding columns to entry table by default
* fix compilation issues after merge with master
* discovered and fixed metastore inserts that were breaking integration tests
* fixup forgotten insert by using pattern of sharing now timestamp across columns
* fix issue introduced by merge
* fixup after merge with master
* add some directions to docs in the case of segment table validation issues
* Update to Calcite 1.35.0
* Update from.ftl for Calcite 1.35.0.
* Fixed tests in Calcite upgrade by doing the following:
1. Added a new rule, CoreRules.PROJECT_FILTER_TRANSPOSE_WHOLE_PROJECT_EXPRESSIONS, to Base rules
2. Refactored the CorrelateUnnestRule
3. Updated CorrelateUnnestRel accordingly
4. Fixed a case with selector filters on the left where Calcite was eliding the virtual column
5. Additional test cases for fixes in 2,3,4
6. Update to StringListAggregator to fail a query if separators are not propagated appropriately
* Refactored for testcases to pass after the upgrade, introduced 2 new data sources for handling filters and select projects
* Added a literalSqlAggregator as the upgraded Calcite involved changes to subquery remove rule. This corrected plans for 2 queries with joins and subqueries by replacing an useless literal dimension with a post agg. Additionally a test with COUNT DISTINCT and FILTER which was failing with Calcite 1.21 is added here which passes with 1.35
* Updated to latest avatica and updated code as SqlUnknownTimeStamp is now used in Calcite which needs to be resolved to a timestamp literal
* Added a wrapper segment ref to use for unnest and filter segment reference
The current version of jackson-databind is flagged for vulnerabilities CVE-2020-28491 (Although cbor format is not used in druid), CVE-2020-36518 (Seems genuine as deeply nested json in can cause resource exhaustion). Updating the dependency to the latest version 2.12.7 to fix these vulnerabilities.
This adds a new contrib extension: druid-iceberg-extensions which can be used to ingest data stored in Apache Iceberg format. It adds a new input source of type iceberg that connects to a catalog and retrieves the data files associated with an iceberg table and provides these data file paths to either an S3 or HDFS input source depending on the warehouse location.
Two important dependencies associated with Apache Iceberg tables are:
Catalog : This extension supports reading from either a Hive Metastore catalog or a Local file-based catalog. Support for AWS Glue is not available yet.
Warehouse : This extension supports reading data files from either HDFS or S3. Adapters for other cloud object locations should be easy to add by extending the AbstractInputSourceAdapter.
Uses a custom continusou jfr profiler.
Modifies the github actions for tests to do profiling only in the case
of jdk17, as the profiler requires jdk17+ to use the JFR streaming API
plus a few other language features in the code.
Continuous Profiling service is provided to the Apache Druid project
free of charge by Imply and any committer can request free access to
the UI.
* Claim full support for Java 17.
No production code has changed, except the startup scripts.
Changes:
1) Allow Java 17 without DRUID_SKIP_JAVA_CHECK.
2) Include the full list of opens and exports on both Java 11 and 17.
3) Document that Java 17 is both supported and preferred.
4) Switch some tests from Java 11 to 17 to get better coverage on the
preferred version.
* Doc update.
* Update errorprone.
* Update docker_build_containers.sh.
* Update errorprone in licenses.yaml.
* Add some more run-javas.
* Additional run-javas.
* Update errorprone.
* Suppress new errorprone error.
* Add exports and opens in ForkingTaskRunner for Java 11+.
Test, doc changes.
* Additional errorprone updates.
* Update for errorprone.
* Restore old fomatting in LdapCredentialsValidator.
* Copy bin/ too.
* Fix Java 15, 17 build line in docker_build_containers.sh.
* Update busybox image.
* One more java command.
* Fix interpolation.
* IT commandline refinements.
* Switch to busybox 1.34.1-glibc.
* POM adjustments, build and test one IT on 17.
* Additional debugging.
* Fix silly thing.
* Adjust command line.
* Add exports and opens one more place.
* Additional harmonization of strong encapsulation parameters.
Apache Druid brings multiple direct and transitive dependencies that are affected by plethora of CVEs.
This PR attempts to update all the dependencies that did not require code refactoring.
This PR modifies pom files, license file and OWASP Dependency Check suppression file.
* combine string column implementations
changes:
* generic indexed, front-coded, and auto string columns now all share the same column and index supplier implementations
* remove CachingIndexed implementation, which I think is largely no longer needed by the switch of many things to directly using ByteBuffer, avoiding the cost of creating Strings
* remove ColumnConfig.columnCacheSizeBytes since CachingIndexed was the only user
Added a new monitor SysMonitorOshi to replace SysMonitor. The new monitor has a wider support for different machine architectures including ARM instances. Please switch to SysMonitorOshi as SysMonitor is now deprecated and will be removed in future releases.
Hadoop 2 often causes red security scans on Druid distribution because of the dependencies it brings. We want to move away from Hadoop 2 and provide Hadoop 3 distribution available. Switch druid to building with Hadoop 3 by default. Druid will still be compatible with Hadoop 2 and users can build hadoop-2 compatible distribution using hadoop2 profile.
This PR is a follow-up to #13819 so that the Tuple sketch functionality can be used in SQL for both ingestion using Multi-Stage Queries (MSQ) and also for analytic queries against Tuple sketch columns.
* Bump CycloneDX module to address POM errors
* Including web-console in the PR
---------
Co-authored-by: Elliott Freis <elliottfreis@Elliott-Freis.earth.dynamic.blacklight.net>
* merge druid-core, extendedset, and druid-hll into druid-processing to simplify everything
* fix poms and license stuff
* mockito is evil
* allow reset of JvmUtils RuntimeInfo if tests used static injection to override
* perf: provide a custom utf8 specific buffered line iterator (benchmark)
Benchmark Mode Cnt Score Error Units
JsonLineReaderBenchmark.baseline avgt 15 3459.871 ± 106.175 us/op
* perf: provide a custom utf8 specific buffered line iterator
Benchmark Mode Cnt Score Error Units
JsonLineReaderBenchmark.baseline avgt 15 3022.053 ± 51.286 us/op
* perf: provide a custom utf8 specific buffered line iterator (more tests)
* perf: provide a custom utf8 specific buffered line iterator (pr feedback)
Ensure field visibility is as limited as possible
Null check for buffer in constructor
* perf: provide a custom utf8 specific buffered line iterator (pr feedback)
Remove additional 'finished' variable.
* perf: provide a custom utf8 specific buffered line iterator (more tests and bugfix)
Druid catalog basics
Catalog object model for tables, columns
Druid metadata DB storage (as an extension)
REST API to update the catalog (as an extension)
Integration tests
Model only: no planner integration yet
* Support for middle manager less druid, tasks launch as k8s jobs
* Fixing forking task runner test
* Test cleanup, dependency cleanup, intellij inspections cleanup
* Changes per PR review
Add configuration option to disable http/https proxy for the k8s client
Update the docs to provide more detail about sidecar support
* Removing un-needed log lines
* Small changes per PR review
* Upon task completion we callback to the overlord to update the status / locaiton, for slower k8s clusters, this reduces locking time significantly
* Merge conflict fix
* Fixing tests and docs
* update tiny-cluster.yaml
changed `enableTaskLevelLogPush` to `encapsulatedTask`
* Apply suggestions from code review
Co-authored-by: Abhishek Agarwal <1477457+abhishekagarwal87@users.noreply.github.com>
* Minor changes per PR request
* Cleanup, adding test to AbstractTask
* Add comment in peon.sh
* Bumping code coverage
* More tests to make code coverage happy
* Doh a duplicate dependnecy
* Integration test setup is weird for k8s, will do this in a different PR
* Reverting back all integration test changes, will do in anotbher PR
* use StringUtils.base64 instead of Base64
* Jdk is nasty, if i compress in jdk 11 in jdk 17 the decompressed result is different
Co-authored-by: Rahul Gidwani <r_gidwani@apple.com>
Co-authored-by: Abhishek Agarwal <1477457+abhishekagarwal87@users.noreply.github.com>
* Update Snappy to 1.1.8.4.
Prior to this, because snappy-java wasn't included in dependencyManagement,
we actually shipped multiple different versions for different extensions,
ranging from 1.1.7.1 to 1.1.8.4. Now, we standardize on 1.1.8.4.
Among other things, this enables the tests to pass on M1 Macs.
* Update snappy-java versions in licenses.yaml.
* Add interpolation to JsonConfigurator
* Fix checkstyle
* Fix tests by removing common-text override
* Add back commons-text without version
* Remove unused hadoopDir configs
* Move some stuff to hopefully pass coverage
Compressed Big Decimal is an extension which provides support for
Mutable big decimal value that can be used to accumulate values
without losing precision or reallocating memory. This type helps in
absolute precision arithmetic on large numbers in applications,
where greater level of accuracy is required, such as financial
applications, currency based transactions. This helps avoid rounding
issues where in potentially large amount of money can be lost.
Accumulation requires that the two numbers have the same scale,
but does not require that they are of the same size. If the value
being accumulated has a larger underlying array than this value
(the result), then the higher order bits are dropped, similar to what
happens when adding a long to an int and storing the result in an
int. A compressed big decimal that holds its data with an embedded
array.
Compressed big decimal is an absolute number based complex type
based on big decimal in Java. This supports all the functionalities
supported by Java Big Decimal. Java Big Decimal is not mutable in
order to avoid big garbage collection issues. Compressed big decimal
is needed to mutate the value in the accumulator.
The docs say Java 17 support is experimental, and give tips on running
successfully with Java 17.
This patch also removes java.base/jdk.internal.perf and
jdk.management/com.sun.management.internal from the list of required
exports and opens, because they were formerly needed for JvmMonitor,
which was rewritten in #12481 to use MXBeans instead.
This dependency was no longer needed after #12481, but remained because
it was used for a (now useless) test. This patch removes the test and
the dependency.
This commit is a first draft of the revised integration test framework which provides:
- A new directory, integration-tests-ex that holds the new integration test structure. (For now, the existing integration-tests is left unchanged.)
- Maven module druid-it-tools to hold code placed into the Docker image.
- Maven module druid-it-image to build the Druid-only test image from the tarball produced in distribution. (Dependencies live in their "official" image.)
- Maven module druid-it-cases that holds the revised tests and the framework itself. The framework includes file-based test configuration, test-specific clients, test initialization and updated versions of some of the common test support classes.
The integration test setup is primarily a huge mass of details. This approach refactors many of those details: from how the image is built and configured to how the Docker Compose scripts are structured to test configuration. An extensive set of "readme" files explains those details. Rather than repeat that material here, please consult those files for explanations.
* Improved Java 17 support and Java runtime docs.
1) Add a "Java runtime" doc page with information about supported
Java versions, garbage collection, and strong encapsulation..
2) Update asm and equalsverifier to versions that support Java 17.
3) Add additional "--add-opens" lines to surefire configuration, so
tests can pass successfully under Java 17.
4) Switch openjdk15 tests to openjdk17.
5) Update FrameFile to specifically mention Java runtime incompatibility
as the cause of not being able to use Memory.map.
6) Update SegmentLoadDropHandler to log an error for Errors too, not
just Exceptions. This is important because an IllegalAccessError is
encountered when the correct "--add-opens" line is not provided,
which would otherwise be silently ignored.
7) Update example configs to use druid.indexer.runner.javaOptsArray
instead of druid.indexer.runner.javaOpts. (The latter is deprecated.)
* Adjustments.
* Use run-java in more places.
* Add run-java.
* Update .gitignore.
* Exclude hadoop-client-api.
Brought in when building on Java 17.
* Swap one more usage of java.
* Fix the run-java script.
* Fix flag.
* Include link to Temurin.
* Spelling.
* Update examples/bin/run-java
Co-authored-by: Xavier Léauté <xl+github@xvrl.net>
Co-authored-by: Xavier Léauté <xl+github@xvrl.net>
* Frame format for data transfer and short-term storage.
As we move towards query execution plans that involve more transfer
of data between servers, it's important to have a data format that
provides for doing this more efficiently than the options available to
us today.
This patch adds:
- Columnar frames, which support fast querying.
- Row-based frames, which support fast sorting via memory comparison
and fast whole-row copies via memory copying.
- Frame files, a container format that can be stored on disk or
transferred between servers.
The idea is we should use row-based frames when data is expected to
be sorted, and columnar frames when data is expected to be queried.
The code in this patch is not used in production yet. Therefore, the
patch involves minimal changes outside of the org.apache.druid.frame
package. The main ones are adjustments to SqlBenchmark to add benchmarks
for queries on frames, and the addition of a "forEach" method to Sequence.
* Fixes based on tests, static analysis.
* Additional fixes.
* Skip DS mapping tests on JDK 14+
* Better JDK checking in tests.
* Fix imports.
* Additional comment.
* Adjustments from code review.
* Update test case.
* jvm gc to mxbeans
* add zgc and shenandoah #12476
* remove tryCreateGcCounter
* separate the space collector
* blend GcGenerationCollector into GcCollector
* add jdk surefire argLine
* Poison StupidPool and fix resource leaks
There are various resource leaks from test setup as well as some
corners in query processing. We poison the StupidPool to start failing
tests when the leaks come and fix any issues uncovered from that so
that we can start from a clean baseline.
Unfortunately, because of how poisoning works,
we can only fail future checkouts from the same pool,
which means that there is a natural race between a
leak happening -> GC occurs -> leak detected -> pool poisoned.
This race means that, depending on interleaving of tests,
if the very last time that an object is checked out
from the pool leaks, then it won't get caught.
At some point in the future, something will catch it,
however and from that point on it will be deterministic.
* Remove various things left over from iterations
* Clean up FilterAnalysis and add javadoc on StupidPool
* Revert changes to .idea/misc.xml that accidentally got pushed
* Style and test branches
* Stylistic woes
This commit contains changes made to the existing ITs to support the new ITs.
Changes:
- Make the "custom node role" code usable by the new ITs.
- Use flag `-DskipITs` to skips the integration tests but runs unit tests.
- Use flag `-DskipUTs` skips unit tests but runs the "new" integration tests.
- Expand the existing Druid profile, `-P skip-tests` to skip both ITs and UTs.
* Adding zstandard compression library
* 1. Took @clintropolis's advice to have ZStandard decompressor use the byte array when the buffers are not direct.
2. Cleaned up checkstyle issues.
* Fixing zstandard version to latest stable version in pom's and updating license files
* Removing zstd from benchmarks and adding to processing (poms)
* fix the intellij inspection issue
* Removing the prefix v for the version in the license check for ztsd
* Fixing license checks
Co-authored-by: Rahul Gidwani <r_gidwani@apple.com>
* Ensure ByteBuffers allocated in tests get freed.
Many tests had problems where a direct ByteBuffer would be allocated
and then not freed. This is bad because it causes flaky tests.
To fix this:
1) Add ByteBufferUtils.allocateDirect(size), which returns a ResourceHolder.
This makes it easy to free the direct buffer. Currently, it's only used
in tests, because production code seems OK.
2) Update all usages of ByteBuffer.allocateDirect (off-heap) in tests either
to ByteBuffer.allocate (on-heap, which are garbaged collected), or to
ByteBufferUtils.allocateDirect (wherever it seemed like there was a good
reason for the buffer to be off-heap). Make sure to close all direct
holders when done.
* Changes based on CI results.
* A different approach.
* Roll back BitmapOperationTest stuff.
* Try additional surefire memory.
* Revert "Roll back BitmapOperationTest stuff."
This reverts commit 49f846d9e3.
* Add TestBufferPool.
* Revert Xmx change in tests.
* Better behaved NestedQueryPushDownTest. Exit tests on OOME.
* Fix TestBufferPool.
* Remove T1C from ARM tests.
* Somewhat safer.
* Fix tests.
* Fix style stuff.
* Additional debugging.
* Reset null / expr configs better.
* ExpressionLambdaAggregatorFactory thread-safety.
* Alter forkNode to try to get better info when a JVM crashes.
* Fix buffer retention in ExpressionLambdaAggregatorFactory.
* Remove unused import.
* Add ipaddress library as dependency.
* IPv4 functions to use the inet.ipaddr package.
* Remove unused imports.
* Add new function.
* Minor rename.
* Add more unit tests.
* IPv4 address expr utils unit tests and address options.
* Adjust the IPv4Util functions.
* Move the UTs a bit around.
* Javadoc comments.
* Add license info for IPAddress.
* Fix groupId, artifact and version in license.yaml.
* Remove redundant subnet in messages - fixes UT.
* Remove unused commons-net dependency for /processing project.
* Make class and methods public so it can be accessed.
* Add initial version of benchmark
* Add subnetutils package for benchmarks.
* Auto generate ip addresses.
* Add more v4 address representations in setup to avoid bias.
* Use ThreadLocalRandom to avoid forbidden API usage.
* Adjust IPv4AddressBenchmark to adhere to codestyle rules.
* Update ipaddress library to latest 5.3.4
* Add ipaddress package dependency to benchmarks project.
* JvmMonitor: Handle more generation and collector scenarios.
ZGC on Java 11 only has a generation 1 (there is no 0). This causes
a NullPointerException when trying to extract the spacesCount for
generation 0. In addition, ZGC on Java 15 has a collector number 2
but no spaces in generation 2, which breaks the assumption that
collectors always have same-numbered spaces.
This patch adjusts things to be more robust, enabling the JvmMonitor
to work properly for ZGC on both Java 11 and 15.
* Test adjustments.
* Improve surefire arglines.
* Need a placeholder
George Shiqi Wu
Xavier Léauté
Tejaswini Bandlamudi
Zoltan Haindrich
dependabot[bot]
Lucas Capistrant
Rishabh Singh
Soumyava
Pranav
AmatyaAvadhanula
Atul Mohan
Sam Rash
Gian Merlino
Jan Werner
Clint Wylie
Hardik Bajaj
Alexander Saydakov
Sandeep
frankgrimes97
Abhishek Agarwal
abhagraw
Benedict Jin
Paul Rogers
Elliott Freis
Adarsh Sanjeev
Dongjoon Hyun
Kashif Faraz
Peter Stöckli
Jason Koch
Didip Kerabat
Dr. Sizzles
chi-chi weng
Frank Chen
Adam Peck
senthilkv
Adam Peck
Karan Kumar
PJ Fanning
Jianhuan Liu
imply-cheddar
Rohan Garg
Rui Chen
Abhishek Radhakrishnan
aggarwalakshay
Gian Merlino