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< h1 > Using GPU On YARN< / h1 >
< h1 > Prerequisites< / h1 >
< ul >
< li > As of now, only Nvidia GPUs are supported by YARN< / li >
< li > YARN node managers have to be pre-installed with Nvidia drivers.< / li >
< li > When Docker is used as container runtime context, nvidia-docker 1.0 needs to be installed (Current supported version in YARN for nvidia-docker).< / li >
< / ul >
< h1 > Configs< / h1 > < section >
< h2 > < a name = "GPU_scheduling" > < / a > GPU scheduling< / h2 >
< p > In < code > resource-types.xml< / code > < / p >
< p > Add following properties< / p >
< div class = "source" >
< div class = "source" >
< pre > < configuration>
< property>
< name> yarn.resource-types< /name>
< value> yarn.io/gpu< /value>
< /property>
< /configuration>
< / pre > < / div > < / div >
< p > In < code > yarn-site.xml< / code > < / p >
< p > < code > DominantResourceCalculator< / code > MUST be configured to enable GPU scheduling/isolation.< / p >
< p > For < code > Capacity Scheduler< / code > , use following property to configure < code > DominantResourceCalculator< / code > (In < code > capacity-scheduler.xml< / code > ):< / p >
< table border = "0" class = "bodyTable" >
< thead >
< tr class = "a" >
< th > Property < / th >
< th > Default value < / th > < / tr >
< / thead > < tbody >
< tr class = "b" >
< td > yarn.scheduler.capacity.resource-calculator < / td >
< td > org.apache.hadoop.yarn.util.resource.DominantResourceCalculator < / td > < / tr >
< / tbody >
< / table > < / section > < section >
< h2 > < a name = "GPU_Isolation" > < / a > GPU Isolation< / h2 > < section >
< h3 > < a name = "In_yarn-site.xml" > < / a > In < code > yarn-site.xml< / code > < / h3 >
< div class = "source" >
< div class = "source" >
< pre > < property>
< name> yarn.nodemanager.resource-plugins< /name>
< value> yarn.io/gpu< /value>
< /property>
< / pre > < / div > < / div >
< p > This is to enable GPU isolation module on NodeManager side.< / p >
< p > By default, YARN will automatically detect and config GPUs when above config is set. Following configs need to be set in < code > yarn-site.xml< / code > only if admin has specialized requirements.< / p >
< p > < b > 1) Allowed GPU Devices< / b > < / p >
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< thead >
< tr class = "a" >
< th > Property < / th >
< th > Default value < / th > < / tr >
< / thead > < tbody >
< tr class = "b" >
< td > yarn.nodemanager.resource-plugins.gpu.allowed-gpu-devices < / td >
< td > auto < / td > < / tr >
< / tbody >
< / table >
< p > Specify GPU devices which can be managed by YARN NodeManager (split by comma). Number of GPU devices will be reported to RM to make scheduling decisions. Set to auto (default) let YARN automatically discover GPU resource from system.< / p >
< p > Manually specify GPU devices if auto detect GPU device failed or admin only want subset of GPU devices managed by YARN. GPU device is identified by their minor device number and index. A common approach to get minor device number of GPUs is using < code > nvidia-smi -q< / code > and search < code > Minor Number< / code > output.< / p >
< p > When minor numbers are specified manually, admin needs to include indice of GPUs as well, format is < code > index:minor_number[,index:minor_number...]< / code > . An example of manual specification is < code > 0:0,1:1,2:2,3:4" < / code > to allow YARN NodeManager to manage GPU devices with indices < code > 0/1/2/3< / code > and minor number < code > 0/1/2/4< / code > . numbers .< / p >
< p > < b > 2) Executable to discover GPUs< / b > < / p >
< table border = "0" class = "bodyTable" >
< thead >
< tr class = "a" >
< th > Property < / th >
< th > value < / th > < / tr >
< / thead > < tbody >
< tr class = "b" >
< td > yarn.nodemanager.resource-plugins.gpu.path-to-discovery-executables < / td >
< td > /absolute/path/to/nvidia-smi < / td > < / tr >
< / tbody >
< / table >
< p > When < code > yarn.nodemanager.resource.gpu.allowed-gpu-devices=auto< / code > specified, YARN NodeManager needs to run GPU discovery binary (now only support < code > nvidia-smi< / code > ) to get GPU-related information. When value is empty (default), YARN NodeManager will try to locate discovery executable itself. An example of the config value is: < code > /usr/local/bin/nvidia-smi< / code > < / p >
< p > < b > 3) Docker Plugin Related Configs< / b > < / p >
< p > Following configs can be customized when user needs to run GPU applications inside Docker container. They’ re not required if admin follows default installation/configuration of < code > nvidia-docker< / code > .< / p >
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< thead >
< tr class = "a" >
< th > Property < / th >
< th > Default value < / th > < / tr >
< / thead > < tbody >
< tr class = "b" >
< td > yarn.nodemanager.resource-plugins.gpu.docker-plugin < / td >
< td > nvidia-docker-v1 < / td > < / tr >
< / tbody >
< / table >
< p > Specify docker command plugin for GPU. By default uses Nvidia docker V1.0, < code > nvidia-docker-v2< / code > is available for V2.x.< / p >
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< thead >
< tr class = "a" >
< th > Property < / th >
< th > Default value < / th > < / tr >
< / thead > < tbody >
< tr class = "b" >
< td > yarn.nodemanager.resource-plugins.gpu.docker-plugin.nvidia-docker-v1.endpoint < / td >
< td > < a class = "externalLink" href = "http://localhost:3476/v1.0/docker/cli" > http://localhost:3476/v1.0/docker/cli< / a > < / td > < / tr >
< / tbody >
< / table >
< p > Specify end point of < code > nvidia-docker-plugin< / code > . Please find documentation: < a class = "externalLink" href = "https://github.com/NVIDIA/nvidia-docker/wiki" > https://github.com/NVIDIA/nvidia-docker/wiki< / a > For more details.< / p >
< p > < b > 4) CGroups mount< / b > < / p >
< p > GPU isolation uses CGroup < a class = "externalLink" href = "https://www.kernel.org/doc/Documentation/cgroup-v1/devices.txt" > devices controller< / a > to do per-GPU device isolation. Following configs should be added to < code > yarn-site.xml< / code > to automatically mount CGroup sub devices, otherwise admin has to manually create devices subfolder in order to use this feature.< / p >
< table border = "0" class = "bodyTable" >
< thead >
< tr class = "a" >
< th > Property < / th >
< th > Default value < / th > < / tr >
< / thead > < tbody >
< tr class = "b" >
< td > yarn.nodemanager.linux-container-executor.cgroups.mount < / td >
< td > true < / td > < / tr >
< / tbody >
< / table > < / section > < section >
< h3 > < a name = "In_container-executor.cfg" > < / a > In < code > container-executor.cfg< / code > < / h3 >
< p > In general, following config needs to be added to < code > container-executor.cfg< / code > < / p >
< div class = "source" >
< div class = "source" >
< pre > [gpu]
module.enabled=true
< / pre > < / div > < / div >
< p > When user needs to run GPU applications under non-Docker environment:< / p >
< div class = "source" >
< div class = "source" >
< pre > [cgroups]
# This should be same as yarn.nodemanager.linux-container-executor.cgroups.mount-path inside yarn-site.xml
root=/sys/fs/cgroup
# This should be same as yarn.nodemanager.linux-container-executor.cgroups.hierarchy inside yarn-site.xml
yarn-hierarchy=yarn
< / pre > < / div > < / div >
< p > When user needs to run GPU applications under Docker environment:< / p >
< p > < b > 1) Add GPU related devices to docker section:< / b > < / p >
< p > Values separated by comma, you can get this by running < code > ls /dev/nvidia*< / code > < / p >
< div class = "source" >
< div class = "source" >
< pre > [docker]
docker.allowed.devices=/dev/nvidiactl,/dev/nvidia-uvm,/dev/nvidia-uvm-tools,/dev/nvidia1,/dev/nvidia0
< / pre > < / div > < / div >
< p > < b > 2) Add < code > nvidia-docker< / code > to volume-driver whitelist.< / b > < / p >
< div class = "source" >
< div class = "source" >
< pre > [docker]
...
docker.allowed.volume-drivers
< / pre > < / div > < / div >
< p > < b > 3) Add < code > nvidia_driver_< version> < / code > to readonly mounts whitelist.< / b > < / p >
< div class = "source" >
< div class = "source" >
< pre > [docker]
...
docker.allowed.ro-mounts=nvidia_driver_375.66
< / pre > < / div > < / div >
< p > < b > 4) If use < code > nvidia-docker-v2< / code > as gpu docker plugin, add < code > nvidia< / code > to runtimes whitelist.< / b > < / p >
< div class = "source" >
< div class = "source" >
< pre > [docker]
...
docker.allowed.runtimes=nvidia
< / pre > < / div > < / div >
< h1 > Use it< / h1 > < / section > < / section > < section >
< h2 > < a name = "Distributed-shell_.2B_GPU" > < / a > Distributed-shell + GPU< / h2 >
< p > Distributed shell currently support specify additional resource types other than memory and vcores.< / p > < section >
< h3 > < a name = "Distributed-shell_.2B_GPU_without_Docker" > < / a > Distributed-shell + GPU without Docker< / h3 >
< p > Run distributed shell without using docker container (Asks 2 tasks, each task has 3GB memory, 1 vcore, 2 GPU device resource):< / p >
< div class = "source" >
< div class = "source" >
< pre > yarn jar < path/to/hadoop-yarn-applications-distributedshell.jar> \
-jar < path/to/hadoop-yarn-applications-distributedshell.jar> \
-shell_command /usr/local/nvidia/bin/nvidia-smi \
-container_resources memory-mb=3072,vcores=1,yarn.io/gpu=2 \
-num_containers 2
< / pre > < / div > < / div >
< p > You should be able to see output like< / p >
< div class = "source" >
< div class = "source" >
< pre > Tue Dec 5 22:21:47 2017
+-----------------------------------------------------------------------------+
| NVIDIA-SMI 375.66 Driver Version: 375.66 |
|-------------------------------+----------------------+----------------------+
| GPU Name Persistence-M| Bus-Id Disp.A | Volatile Uncorr. ECC |
| Fan Temp Perf Pwr:Usage/Cap| Memory-Usage | GPU-Util Compute M. |
|===============================+======================+======================|
| 0 Tesla P100-PCIE... Off | 0000:04:00.0 Off | 0 |
| N/A 30C P0 24W / 250W | 0MiB / 12193MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
| 1 Tesla P100-PCIE... Off | 0000:82:00.0 Off | 0 |
| N/A 34C P0 25W / 250W | 0MiB / 12193MiB | 0% Default |
+-------------------------------+----------------------+----------------------+
+-----------------------------------------------------------------------------+
| Processes: GPU Memory |
| GPU PID Type Process name Usage |
|=============================================================================|
| No running processes found |
+-----------------------------------------------------------------------------+
< / pre > < / div > < / div >
< p > For launched container task.< / p > < / section > < section >
< h3 > < a name = "Distributed-shell_.2B_GPU_with_Docker" > < / a > Distributed-shell + GPU with Docker< / h3 >
< p > You can also run distributed shell with Docker container. < code > YARN_CONTAINER_RUNTIME_TYPE< / code > /< code > YARN_CONTAINER_RUNTIME_DOCKER_IMAGE< / code > must be specified to use docker container.< / p >
< div class = "source" >
< div class = "source" >
< pre > yarn jar < path/to/hadoop-yarn-applications-distributedshell.jar> \
-jar < path/to/hadoop-yarn-applications-distributedshell.jar> \
-shell_env YARN_CONTAINER_RUNTIME_TYPE=docker \
-shell_env YARN_CONTAINER_RUNTIME_DOCKER_IMAGE=< docker-image-name> \
-shell_command nvidia-smi \
-container_resources memory-mb=3072,vcores=1,yarn.io/gpu=2 \
-num_containers 2
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