Apache
/
hadoop
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity

HDDS-1121. Key read failure when data is written parallel in to Ozone. 

Contributed by Bharat Viswanadham.
This commit is contained in:
Anu Engineer 2019-02-19 10:55:33 -08:00
parent 779dae4de7
commit 02d04bd107
7 changed files with 144 additions and 47 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

14
hadoop-hdds/client/src/main/java/org/apache/hadoop/hdds/scm/storage/BlockOutputStream.java
View File

@ -29,6 +29,7 @@ import org.apache.ratis.thirdparty.com.google.protobuf.ByteString;
import org.apache.commons.codec.digest.DigestUtils;
import org.apache.hadoop.hdds.scm.XceiverClientManager;
import org.apache.hadoop.hdds.scm.XceiverClientSpi;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos.ChecksumType;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos.ChunkInfo;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos.BlockData;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos.KeyValue;
@ -76,7 +77,8 @@ public class BlockOutputStream extends OutputStream {
private final BlockData.Builder containerBlockData;
private XceiverClientManager xceiverClientManager;
private XceiverClientSpi xceiverClient;
private final Checksum checksum;
private final ContainerProtos.ChecksumType checksumType;
private final int bytesPerChecksum;
private final String streamId;
private int chunkIndex;
private int chunkSize;
@ -121,14 +123,16 @@ public class BlockOutputStream extends OutputStream {
* @param streamBufferFlushSize flush size
* @param streamBufferMaxSize max size of the currentBuffer
* @param watchTimeout watch timeout
* @param checksum checksum
* @param checksumType checksum type
* @param bytesPerChecksum Bytes per checksum
*/
@SuppressWarnings("parameternumber")
public BlockOutputStream(BlockID blockID, String key,
XceiverClientManager xceiverClientManager, Pipeline pipeline,
String traceID, int chunkSize, long streamBufferFlushSize,
long streamBufferMaxSize, long watchTimeout, List<ByteBuffer> bufferList,
Checksum checksum) throws IOException {
ChecksumType checksumType, int bytesPerChecksum)
throws IOException {
this.blockID = blockID;
this.key = key;
this.traceID = traceID;
@ -146,7 +150,8 @@ public class BlockOutputStream extends OutputStream {
this.streamBufferMaxSize = streamBufferMaxSize;
this.watchTimeout = watchTimeout;
this.bufferList = bufferList;
this.checksum = checksum;
this.checksumType = checksumType;
this.bytesPerChecksum = bytesPerChecksum;
// A single thread executor handle the responses of async requests
responseExecutor = Executors.newSingleThreadExecutor();
@ -585,6 +590,7 @@ public class BlockOutputStream extends OutputStream {
private void writeChunkToContainer(ByteBuffer chunk) throws IOException {
int effectiveChunkSize = chunk.remaining();
ByteString data = ByteString.copyFrom(chunk);
Checksum checksum = new Checksum(checksumType, bytesPerChecksum);
ChecksumData checksumData = checksum.computeChecksum(data);
ChunkInfo chunkInfo = ChunkInfo.newBuilder()
.setChunkName(DigestUtils.md5Hex(key) + "_stream_" + streamId +

2
hadoop-hdds/common/src/main/java/org/apache/hadoop/ozone/common/Checksum.java
View File

@ -38,6 +38,8 @@ import org.slf4j.LoggerFactory;
/**
* Class to compute and verify checksums for chunks.
*
* This class is not thread safe.
*/
public class Checksum {

33
hadoop-ozone/client/src/main/java/org/apache/hadoop/ozone/client/io/BlockOutputStreamEntry.java
View File

@ -23,11 +23,12 @@ import java.nio.ByteBuffer;
import java.util.List;
import org.apache.hadoop.hdds.client.BlockID;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos
.ChecksumType;
import org.apache.hadoop.hdds.scm.XceiverClientManager;
import org.apache.hadoop.hdds.scm.pipeline.Pipeline;
import org.apache.hadoop.hdds.scm.storage.BlockOutputStream;
import org.apache.hadoop.hdds.security.token.OzoneBlockTokenIdentifier;
import org.apache.hadoop.ozone.common.Checksum;
import org.apache.hadoop.security.UserGroupInformation;
import org.apache.hadoop.security.token.Token;
@ -41,7 +42,8 @@ public final class BlockOutputStreamEntry extends OutputStream {
private final String key;
private final XceiverClientManager xceiverClientManager;
private final Pipeline pipeline;
private final Checksum checksum;
private final ChecksumType checksumType;
private final int bytesPerChecksum;
private final String requestId;
private final int chunkSize;
// total number of bytes that should be written to this stream
@ -60,7 +62,8 @@ public final class BlockOutputStreamEntry extends OutputStream {
XceiverClientManager xceiverClientManager,
Pipeline pipeline, String requestId, int chunkSize,
long length, long streamBufferFlushSize, long streamBufferMaxSize,
long watchTimeout, List<ByteBuffer> bufferList, Checksum checksum,
long watchTimeout, List<ByteBuffer> bufferList,
ChecksumType checksumType, int bytesPerChecksum,
Token<OzoneBlockTokenIdentifier> token) {
this.outputStream = null;
this.blockID = blockID;
@ -76,7 +79,8 @@ public final class BlockOutputStreamEntry extends OutputStream {
this.streamBufferMaxSize = streamBufferMaxSize;
this.watchTimeout = watchTimeout;
this.bufferList = bufferList;
this.checksum = checksum;
this.checksumType = checksumType;
this.bytesPerChecksum = bytesPerChecksum;
}
long getLength() {
@ -105,7 +109,8 @@ public final class BlockOutputStreamEntry extends OutputStream {
this.outputStream =
new BlockOutputStream(blockID, key, xceiverClientManager,
pipeline, requestId, chunkSize, streamBufferFlushSize,
streamBufferMaxSize, watchTimeout, bufferList, checksum);
streamBufferMaxSize, watchTimeout, bufferList, checksumType,
bytesPerChecksum);
}
}
@ -198,10 +203,16 @@ public final class BlockOutputStreamEntry extends OutputStream {
private long watchTimeout;
private List<ByteBuffer> bufferList;
private Token<OzoneBlockTokenIdentifier> token;
private Checksum checksum;
private ChecksumType checksumType;
private int bytesPerChecksum;
public Builder setChecksum(Checksum cs) {
this.checksum = cs;
public Builder setChecksumType(ChecksumType type) {
this.checksumType = type;
return this;
}
public Builder setBytesPerChecksum(int bytes) {
this.bytesPerChecksum = bytes;
return this;
}
@ -270,7 +281,7 @@ public final class BlockOutputStreamEntry extends OutputStream {
return new BlockOutputStreamEntry(blockID, key,
xceiverClientManager, pipeline, requestId, chunkSize,
length, streamBufferFlushSize, streamBufferMaxSize, watchTimeout,
bufferList, checksum, token);
bufferList, checksumType, bytesPerChecksum, token);
}
}
@ -294,10 +305,6 @@ public final class BlockOutputStreamEntry extends OutputStream {
return pipeline;
}
public Checksum getChecksum() {
return checksum;
}
public String getRequestId() {
return requestId;
}

37
hadoop-ozone/client/src/main/java/org/apache/hadoop/ozone/client/io/KeyOutputStream.java
View File

@ -21,10 +21,12 @@ import com.google.common.annotations.VisibleForTesting;
import com.google.common.base.Preconditions;
import org.apache.hadoop.fs.FSExceptionMessages;
import org.apache.hadoop.fs.FileEncryptionInfo;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos
.ChecksumType;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos.Result;
import org.apache.hadoop.hdds.scm.container.common.helpers.ContainerNotOpenException;
import org.apache.hadoop.hdds.scm.container.common.helpers.ContainerWithPipeline;
import org.apache.hadoop.ozone.common.Checksum;
import org.apache.hadoop.ozone.OzoneConfigKeys;
import org.apache.hadoop.ozone.om.helpers.*;
import org.apache.hadoop.hdds.protocol.proto.HddsProtos.ReplicationType;
import org.apache.hadoop.hdds.protocol.proto.HddsProtos.ReplicationFactor;
@ -79,7 +81,8 @@ public class KeyOutputStream extends OutputStream {
private final long streamBufferMaxSize;
private final long watchTimeout;
private final long blockSize;
private final Checksum checksum;
private final int bytesPerChecksum;
private final ChecksumType checksumType;
private List<ByteBuffer> bufferList;
private OmMultipartCommitUploadPartInfo commitUploadPartInfo;
private FileEncryptionInfo feInfo;
@ -106,7 +109,10 @@ public class KeyOutputStream extends OutputStream {
bufferList.add(buffer);
watchTimeout = 0;
blockSize = 0;
this.checksum = new Checksum();
this.checksumType = ChecksumType.valueOf(
OzoneConfigKeys.OZONE_CLIENT_CHECKSUM_TYPE_DEFAULT);
this.bytesPerChecksum = OzoneConfigKeys
.OZONE_CLIENT_BYTES_PER_CHECKSUM_DEFAULT_BYTES; // Default is 1MB
}
@VisibleForTesting
@ -142,7 +148,8 @@ public class KeyOutputStream extends OutputStream {
OzoneManagerProtocolClientSideTranslatorPB omClient, int chunkSize,
String requestId, ReplicationFactor factor, ReplicationType type,
long bufferFlushSize, long bufferMaxSize, long size, long watchTimeout,
Checksum checksum, String uploadID, int partNumber, boolean isMultipart) {
ChecksumType checksumType, int bytesPerChecksum,
String uploadID, int partNumber, boolean isMultipart) {
this.streamEntries = new ArrayList<>();
this.currentStreamIndex = 0;
this.omClient = omClient;
@ -165,7 +172,8 @@ public class KeyOutputStream extends OutputStream {
this.streamBufferMaxSize = bufferMaxSize;
this.blockSize = size;
this.watchTimeout = watchTimeout;
this.checksum = checksum;
this.bytesPerChecksum = bytesPerChecksum;
this.checksumType = checksumType;
Preconditions.checkState(chunkSize > 0);
Preconditions.checkState(streamBufferFlushSize > 0);
@ -220,7 +228,8 @@ public class KeyOutputStream extends OutputStream {
.setStreamBufferMaxSize(streamBufferMaxSize)
.setWatchTimeout(watchTimeout)
.setBufferList(bufferList)
.setChecksum(checksum)
.setChecksumType(checksumType)
.setBytesPerChecksum(bytesPerChecksum)
.setToken(subKeyInfo.getToken());
streamEntries.add(builder.build());
}
@ -573,7 +582,8 @@ public class KeyOutputStream extends OutputStream {
private long streamBufferMaxSize;
private long blockSize;
private long watchTimeout;
private Checksum checksum;
private ChecksumType checksumType;
private int bytesPerChecksum;
private String multipartUploadID;
private int multipartNumber;
private boolean isMultipartKey;
@ -651,8 +661,13 @@ public class KeyOutputStream extends OutputStream {
return this;
}
public Builder setChecksum(Checksum checksumObj){
this.checksum = checksumObj;
public Builder setChecksumType(ChecksumType cType){
this.checksumType = cType;
return this;
}
public Builder setBytesPerChecksum(int bytes){
this.bytesPerChecksum = bytes;
return this;
}
@ -664,8 +679,8 @@ public class KeyOutputStream extends OutputStream {
public KeyOutputStream build() throws IOException {
return new KeyOutputStream(openHandler, xceiverManager, scmClient,
omClient, chunkSize, requestID, factor, type, streamBufferFlushSize,
streamBufferMaxSize, blockSize, watchTimeout, checksum,
multipartUploadID, multipartNumber, isMultipartKey);
streamBufferMaxSize, blockSize, watchTimeout, checksumType,
bytesPerChecksum, multipartUploadID, multipartNumber, isMultipartKey);
}
}

20
hadoop-ozone/client/src/main/java/org/apache/hadoop/ozone/client/rpc/RpcClient.java
View File

@ -48,7 +48,6 @@ import org.apache.hadoop.ozone.client.io.LengthInputStream;
import org.apache.hadoop.ozone.client.io.OzoneInputStream;
import org.apache.hadoop.ozone.client.io.OzoneOutputStream;
import org.apache.hadoop.ozone.client.protocol.ClientProtocol;
import org.apache.hadoop.ozone.common.Checksum;
import org.apache.hadoop.ozone.om.helpers.BucketEncryptionKeyInfo;
import org.apache.hadoop.ozone.om.helpers.OmBucketArgs;
import org.apache.hadoop.ozone.om.helpers.OmBucketInfo;
@ -110,7 +109,8 @@ public class RpcClient implements ClientProtocol {
ozoneManagerClient;
private final XceiverClientManager xceiverClientManager;
private final int chunkSize;
private final Checksum checksum;
private final ChecksumType checksumType;
private final int bytesPerChecksum;
private final UserGroupInformation ugi;
private final OzoneAcl.OzoneACLRights userRights;
private final OzoneAcl.OzoneACLRights groupRights;
@ -189,22 +189,22 @@ public class RpcClient implements ClientProtocol {
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM,
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_DEFAULT,
StorageUnit.BYTES);
int checksumSize;
if(configuredChecksumSize <
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_MIN_SIZE) {
LOG.warn("The checksum size ({}) is not allowed to be less than the " +
"minimum size ({}), resetting to the minimum size.",
configuredChecksumSize,
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_MIN_SIZE);
checksumSize = OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_MIN_SIZE;
bytesPerChecksum =
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_MIN_SIZE;
} else {
checksumSize = configuredChecksumSize;
bytesPerChecksum = configuredChecksumSize;
}
String checksumTypeStr = conf.get(
OzoneConfigKeys.OZONE_CLIENT_CHECKSUM_TYPE,
OzoneConfigKeys.OZONE_CLIENT_CHECKSUM_TYPE_DEFAULT);
ChecksumType checksumType = ChecksumType.valueOf(checksumTypeStr);
this.checksum = new Checksum(checksumType, checksumSize);
checksumType = ChecksumType.valueOf(checksumTypeStr);
}
private InetSocketAddress getScmAddressForClient() throws IOException {
@ -602,7 +602,8 @@ public class RpcClient implements ClientProtocol {
.setStreamBufferMaxSize(streamBufferMaxSize)
.setWatchTimeout(watchTimeout)
.setBlockSize(blockSize)
.setChecksum(checksum)
.setChecksumType(checksumType)
.setBytesPerChecksum(bytesPerChecksum)
.build();
groupOutputStream.addPreallocateBlocks(
openKey.getKeyInfo().getLatestVersionLocations(),
@ -863,7 +864,8 @@ public class RpcClient implements ClientProtocol {
.setStreamBufferMaxSize(streamBufferMaxSize)
.setWatchTimeout(watchTimeout)
.setBlockSize(blockSize)
.setChecksum(checksum)
.setBytesPerChecksum(bytesPerChecksum)
.setChecksumType(checksumType)
.setMultipartNumber(partNumber)
.setMultipartUploadID(uploadID)
.setIsMultipartKey(true)

63
hadoop-ozone/integration-test/src/test/java/org/apache/hadoop/ozone/client/rpc/TestOzoneRpcClientAbstract.java
View File

@ -27,6 +27,9 @@ import java.util.List;
import java.util.Map;
import java.util.TreeMap;
import java.util.UUID;
import java.util.concurrent.CountDownLatch;
import java.util.concurrent.TimeUnit;
import java.util.concurrent.atomic.AtomicInteger;
import org.apache.hadoop.hdds.client.OzoneQuota;
import org.apache.hadoop.hdds.client.ReplicationFactor;
@ -681,6 +684,66 @@ public abstract class TestOzoneRpcClientAbstract {
}
}
@Test
public void testPutKeyRatisThreeNodesParallel() throws IOException,
InterruptedException {
String volumeName = UUID.randomUUID().toString();
String bucketName = UUID.randomUUID().toString();
long currentTime = Time.now();
store.createVolume(volumeName);
OzoneVolume volume = store.getVolume(volumeName);
volume.createBucket(bucketName);
OzoneBucket bucket = volume.getBucket(bucketName);
CountDownLatch latch = new CountDownLatch(2);
AtomicInteger failCount = new AtomicInteger(0);
Runnable r = () -> {
try {
for (int i = 0; i < 5; i++) {
String keyName = UUID.randomUUID().toString();
String data = generateData(5 * 1024 * 1024,
(byte) RandomUtils.nextLong()).toString();
OzoneOutputStream out = bucket.createKey(keyName,
data.getBytes().length, ReplicationType.RATIS,
ReplicationFactor.THREE, new HashMap<>());
out.write(data.getBytes());
out.close();
OzoneKey key = bucket.getKey(keyName);
Assert.assertEquals(keyName, key.getName());
OzoneInputStream is = bucket.readKey(keyName);
byte[] fileContent = new byte[data.getBytes().length];
is.read(fileContent);
is.close();
Assert.assertTrue(verifyRatisReplication(volumeName, bucketName,
keyName, ReplicationType.RATIS,
ReplicationFactor.THREE));
Assert.assertEquals(data, new String(fileContent));
Assert.assertTrue(key.getCreationTime() >= currentTime);
Assert.assertTrue(key.getModificationTime() >= currentTime);
}
latch.countDown();
} catch (IOException ex) {
latch.countDown();
failCount.incrementAndGet();
}
};
Thread thread1 = new Thread(r);
Thread thread2 = new Thread(r);
thread1.start();
thread2.start();
latch.await(600, TimeUnit.SECONDS);
if (failCount.get() > 0) {
fail("testPutKeyRatisThreeNodesParallel failed");
}
}
private void readKey(OzoneBucket bucket, String keyName, String data)
throws IOException {
OzoneKey key = bucket.getKey(keyName);

22
hadoop-ozone/objectstore-service/src/main/java/org/apache/hadoop/ozone/web/storage/DistributedStorageHandler.java
View File

@ -24,11 +24,11 @@ import org.apache.hadoop.hdds.client.ReplicationType;
import org.apache.hadoop.hdds.scm.client.HddsClientUtils;
import org.apache.hadoop.io.IOUtils;
import org.apache.hadoop.ozone.OzoneConfigKeys;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos;
import org.apache.hadoop.hdds.protocol.datanode.proto.ContainerProtos
.ChecksumType;
import org.apache.hadoop.ozone.client.io.KeyInputStream;
import org.apache.hadoop.ozone.client.io.KeyOutputStream;
import org.apache.hadoop.ozone.client.io.LengthInputStream;
import org.apache.hadoop.ozone.common.Checksum;
import org.apache.hadoop.ozone.om.helpers.OmBucketArgs;
import org.apache.hadoop.ozone.om.helpers.OmBucketInfo;
import org.apache.hadoop.ozone.om.helpers.OmKeyArgs;
@ -86,7 +86,8 @@ public final class DistributedStorageHandler implements StorageHandler {
private final long streamBufferMaxSize;
private final long watchTimeout;
private final long blockSize;
private final Checksum checksum;
private final ChecksumType checksumType;
private final int bytesPerChecksum;
/**
* Creates a new DistributedStorageHandler.
@ -136,23 +137,23 @@ public final class DistributedStorageHandler implements StorageHandler {
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM,
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_DEFAULT,
StorageUnit.BYTES);
int checksumSize;
if(configuredChecksumSize <
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_MIN_SIZE) {
LOG.warn("The checksum size ({}) is not allowed to be less than the " +
"minimum size ({}), resetting to the minimum size.",
configuredChecksumSize,
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_MIN_SIZE);
checksumSize = OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_MIN_SIZE;
bytesPerChecksum =
OzoneConfigKeys.OZONE_CLIENT_BYTES_PER_CHECKSUM_MIN_SIZE;
} else {
checksumSize = configuredChecksumSize;
bytesPerChecksum = configuredChecksumSize;
}
String checksumTypeStr = conf.get(
OzoneConfigKeys.OZONE_CLIENT_CHECKSUM_TYPE,
OzoneConfigKeys.OZONE_CLIENT_CHECKSUM_TYPE_DEFAULT);
ContainerProtos.ChecksumType checksumType = ContainerProtos.ChecksumType
.valueOf(checksumTypeStr);
this.checksum = new Checksum(checksumType, checksumSize);
this.checksumType = ChecksumType.valueOf(checksumTypeStr);
}
@Override
@ -451,7 +452,8 @@ public final class DistributedStorageHandler implements StorageHandler {
.setStreamBufferMaxSize(streamBufferMaxSize)
.setBlockSize(blockSize)
.setWatchTimeout(watchTimeout)
.setChecksum(checksum)
.setChecksumType(checksumType)
.setBytesPerChecksum(bytesPerChecksum)
.build();
groupOutputStream.addPreallocateBlocks(
openKey.getKeyInfo().getLatestVersionLocations(),