MAPREDUCE-4892. Modify CombineFileInputFormat to not skew input slits' allocation on small clusters. Contributed by Bikas Saha.
git-svn-id: https://svn.apache.org/repos/asf/hadoop/common/trunk@1450912 13f79535-47bb-0310-9956-ffa450edef68
This commit is contained in:
Vinod Kumar Vavilapalli
parent
0057600a82
commit
0b9ed2364a
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@ -166,6 +166,9 @@ Release 2.0.4-beta - UNRELEASED
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MAPREDUCE-5033. mapred shell script should respect usage flags
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(--help -help -h). (Andrew Wang via atm)
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MAPREDUCE-4892. Modify CombineFileInputFormat to not skew input slits'
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allocation on small clusters. (Bikas Saha via vinodkv)
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OPTIMIZATIONS
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BUG FIXES
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@ -49,6 +49,8 @@ import org.apache.hadoop.mapreduce.TaskAttemptContext;
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import org.apache.hadoop.net.NodeBase;
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import org.apache.hadoop.net.NetworkTopology;
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import com.google.common.annotations.VisibleForTesting;
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/**
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* An abstract {@link InputFormat} that returns {@link CombineFileSplit}'s in
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* {@link InputFormat#getSplits(JobContext)} method.
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@ -76,7 +78,7 @@ import org.apache.hadoop.net.NetworkTopology;
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@InterfaceStability.Stable
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public abstract class CombineFileInputFormat<K, V>
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extends FileInputFormat<K, V> {
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public static final String SPLIT_MINSIZE_PERNODE =
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"mapreduce.input.fileinputformat.split.minsize.per.node";
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public static final String SPLIT_MINSIZE_PERRACK =
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@ -163,7 +165,6 @@ public abstract class CombineFileInputFormat<K, V>
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@Override
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public List<InputSplit> getSplits(JobContext job)
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throws IOException {
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long minSizeNode = 0;
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long minSizeRack = 0;
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long maxSize = 0;
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@ -286,56 +287,100 @@ public abstract class CombineFileInputFormat<K, V>
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rackToNodes, maxSize);
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totLength += files[i].getLength();
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}
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createSplits(nodeToBlocks, blockToNodes, rackToBlocks, totLength,
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maxSize, minSizeNode, minSizeRack, splits);
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}
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@VisibleForTesting
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void createSplits(HashMap<String, List<OneBlockInfo>> nodeToBlocks,
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HashMap<OneBlockInfo, String[]> blockToNodes,
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HashMap<String, List<OneBlockInfo>> rackToBlocks,
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long totLength,
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long maxSize,
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long minSizeNode,
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long minSizeRack,
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List<InputSplit> splits
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) {
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ArrayList<OneBlockInfo> validBlocks = new ArrayList<OneBlockInfo>();
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Set<String> nodes = new HashSet<String>();
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long curSplitSize = 0;
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int numNodes = nodeToBlocks.size();
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long totalLength = totLength;
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// process all nodes and create splits that are local
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// to a node.
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for (Iterator<Map.Entry<String,
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List<OneBlockInfo>>> iter = nodeToBlocks.entrySet().iterator();
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iter.hasNext();) {
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while(true) {
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// it is allowed for maxSize to be 0. Disable smoothing load for such cases
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int avgSplitsPerNode = maxSize > 0 && numNodes > 0 ?
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((int) (totalLength/maxSize))/numNodes
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: Integer.MAX_VALUE;
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int maxSplitsByNodeOnly = (avgSplitsPerNode > 0) ? avgSplitsPerNode : 1;
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numNodes = 0;
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Map.Entry<String, List<OneBlockInfo>> one = iter.next();
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nodes.add(one.getKey());
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List<OneBlockInfo> blocksInNode = one.getValue();
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// process all nodes and create splits that are local to a node.
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for (Iterator<Map.Entry<String, List<OneBlockInfo>>> iter = nodeToBlocks
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.entrySet().iterator(); iter.hasNext();) {
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Map.Entry<String, List<OneBlockInfo>> one = iter.next();
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nodes.add(one.getKey());
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List<OneBlockInfo> blocksInNode = one.getValue();
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// for each block, copy it into validBlocks. Delete it from
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// blockToNodes so that the same block does not appear in
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// two different splits.
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for (OneBlockInfo oneblock : blocksInNode) {
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if (blockToNodes.containsKey(oneblock)) {
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validBlocks.add(oneblock);
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blockToNodes.remove(oneblock);
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curSplitSize += oneblock.length;
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// for each block, copy it into validBlocks. Delete it from
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// blockToNodes so that the same block does not appear in
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// two different splits.
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int splitsInNode = 0;
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for (OneBlockInfo oneblock : blocksInNode) {
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if (blockToNodes.containsKey(oneblock)) {
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validBlocks.add(oneblock);
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blockToNodes.remove(oneblock);
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curSplitSize += oneblock.length;
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// if the accumulated split size exceeds the maximum, then
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// create this split.
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if (maxSize != 0 && curSplitSize >= maxSize) {
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// create an input split and add it to the splits array
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addCreatedSplit(splits, nodes, validBlocks);
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curSplitSize = 0;
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validBlocks.clear();
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// if the accumulated split size exceeds the maximum, then
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// create this split.
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if (maxSize != 0 && curSplitSize >= maxSize) {
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// create an input split and add it to the splits array
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addCreatedSplit(splits, nodes, validBlocks);
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totalLength -= curSplitSize;
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curSplitSize = 0;
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validBlocks.clear();
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splitsInNode++;
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if (splitsInNode == maxSplitsByNodeOnly) {
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// stop grouping on a node so as not to create
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// disproportionately more splits on a node because it happens
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// to have many blocks
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// consider only these nodes in next round of grouping because
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// they have leftover blocks that may need to be grouped
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numNodes++;
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break;
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}
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}
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}
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}
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}
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// if there were any blocks left over and their combined size is
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// larger than minSplitNode, then combine them into one split.
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// Otherwise add them back to the unprocessed pool. It is likely
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// that they will be combined with other blocks from the
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// same rack later on.
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if (minSizeNode != 0 && curSplitSize >= minSizeNode) {
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// create an input split and add it to the splits array
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addCreatedSplit(splits, nodes, validBlocks);
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} else {
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for (OneBlockInfo oneblock : validBlocks) {
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blockToNodes.put(oneblock, oneblock.hosts);
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// if there were any blocks left over and their combined size is
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// larger than minSplitNode, then combine them into one split.
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// Otherwise add them back to the unprocessed pool. It is likely
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// that they will be combined with other blocks from the
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// same rack later on.
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if (minSizeNode != 0 && curSplitSize >= minSizeNode
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&& splitsInNode == 0) {
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// haven't created any split on this machine. so its ok to add a
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// smaller
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// one for parallelism. Otherwise group it in the rack for balanced
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// size
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// create an input split and add it to the splits array
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addCreatedSplit(splits, nodes, validBlocks);
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totalLength -= curSplitSize;
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} else {
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for (OneBlockInfo oneblock : validBlocks) {
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blockToNodes.put(oneblock, oneblock.hosts);
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}
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}
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validBlocks.clear();
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nodes.clear();
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curSplitSize = 0;
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}
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if(!(numNodes>0 && totalLength>0)) {
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break;
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}
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validBlocks.clear();
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nodes.clear();
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curSplitSize = 0;
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}
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// if blocks in a rack are below the specified minimum size, then keep them
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@ -458,7 +503,6 @@ public abstract class CombineFileInputFormat<K, V>
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offset[i] = validBlocks.get(i).offset;
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length[i] = validBlocks.get(i).length;
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}
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// add this split to the list that is returned
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CombineFileSplit thissplit = new CombineFileSplit(fl, offset,
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length, locations.toArray(new String[0]));
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@ -474,7 +518,8 @@ public abstract class CombineFileInputFormat<K, V>
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/**
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* information about one file from the File System
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*/
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private static class OneFileInfo {
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@VisibleForTesting
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static class OneFileInfo {
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private long fileSize; // size of the file
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private OneBlockInfo[] blocks; // all blocks in this file
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@ -545,45 +590,55 @@ public abstract class CombineFileInputFormat<K, V>
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}
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blocks = blocksList.toArray(new OneBlockInfo[blocksList.size()]);
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}
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populateBlockInfo(blocks, rackToBlocks, blockToNodes,
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nodeToBlocks, rackToNodes);
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}
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}
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@VisibleForTesting
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static void populateBlockInfo(OneBlockInfo[] blocks,
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HashMap<String, List<OneBlockInfo>> rackToBlocks,
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HashMap<OneBlockInfo, String[]> blockToNodes,
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HashMap<String, List<OneBlockInfo>> nodeToBlocks,
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HashMap<String, Set<String>> rackToNodes) {
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for (OneBlockInfo oneblock : blocks) {
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// add this block to the block --> node locations map
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blockToNodes.put(oneblock, oneblock.hosts);
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for (OneBlockInfo oneblock : blocks) {
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// add this block to the block --> node locations map
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blockToNodes.put(oneblock, oneblock.hosts);
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// For blocks that do not have host/rack information,
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// assign to default rack.
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String[] racks = null;
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if (oneblock.hosts.length == 0) {
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racks = new String[]{NetworkTopology.DEFAULT_RACK};
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} else {
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racks = oneblock.racks;
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}
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// For blocks that do not have host/rack information,
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// assign to default rack.
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String[] racks = null;
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if (oneblock.hosts.length == 0) {
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racks = new String[]{NetworkTopology.DEFAULT_RACK};
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} else {
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racks = oneblock.racks;
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// add this block to the rack --> block map
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for (int j = 0; j < racks.length; j++) {
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String rack = racks[j];
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List<OneBlockInfo> blklist = rackToBlocks.get(rack);
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if (blklist == null) {
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blklist = new ArrayList<OneBlockInfo>();
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rackToBlocks.put(rack, blklist);
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}
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// add this block to the rack --> block map
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for (int j = 0; j < racks.length; j++) {
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String rack = racks[j];
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List<OneBlockInfo> blklist = rackToBlocks.get(rack);
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if (blklist == null) {
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blklist = new ArrayList<OneBlockInfo>();
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rackToBlocks.put(rack, blklist);
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}
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blklist.add(oneblock);
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if (!racks[j].equals(NetworkTopology.DEFAULT_RACK)) {
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// Add this host to rackToNodes map
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addHostToRack(rackToNodes, racks[j], oneblock.hosts[j]);
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}
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blklist.add(oneblock);
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if (!racks[j].equals(NetworkTopology.DEFAULT_RACK)) {
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// Add this host to rackToNodes map
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addHostToRack(rackToNodes, racks[j], oneblock.hosts[j]);
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}
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}
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// add this block to the node --> block map
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for (int j = 0; j < oneblock.hosts.length; j++) {
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String node = oneblock.hosts[j];
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List<OneBlockInfo> blklist = nodeToBlocks.get(node);
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if (blklist == null) {
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blklist = new ArrayList<OneBlockInfo>();
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nodeToBlocks.put(node, blklist);
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}
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blklist.add(oneblock);
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// add this block to the node --> block map
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for (int j = 0; j < oneblock.hosts.length; j++) {
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String node = oneblock.hosts[j];
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List<OneBlockInfo> blklist = nodeToBlocks.get(node);
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if (blklist == null) {
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blklist = new ArrayList<OneBlockInfo>();
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nodeToBlocks.put(node, blklist);
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}
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blklist.add(oneblock);
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}
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}
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}
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@ -600,7 +655,8 @@ public abstract class CombineFileInputFormat<K, V>
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/**
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* information about one block from the File System
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*/
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private static class OneBlockInfo {
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@VisibleForTesting
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static class OneBlockInfo {
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Path onepath; // name of this file
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long offset; // offset in file
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long length; // length of this block
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@ -20,11 +20,14 @@ package org.apache.hadoop.mapreduce.lib.input;
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import java.io.IOException;
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import java.io.OutputStream;
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import java.net.URI;
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import java.util.HashMap;
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import java.util.List;
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import java.util.ArrayList;
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import java.util.Set;
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import java.util.zip.GZIPOutputStream;
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import java.util.concurrent.TimeoutException;
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import junit.framework.Assert;
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import junit.framework.TestCase;
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import org.apache.hadoop.fs.*;
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@ -42,9 +45,13 @@ import org.apache.hadoop.mapreduce.RecordReader;
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import org.apache.hadoop.mapreduce.TaskAttemptContext;
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import org.apache.hadoop.mapreduce.TaskAttemptID;
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import org.apache.hadoop.mapreduce.TaskType;
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import org.apache.hadoop.mapreduce.lib.input.CombineFileInputFormat.OneBlockInfo;
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import org.apache.hadoop.mapreduce.lib.input.CombineFileInputFormat.OneFileInfo;
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import org.apache.hadoop.mapreduce.task.TaskAttemptContextImpl;
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import org.junit.Test;
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import com.google.common.collect.HashMultiset;
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public class TestCombineFileInputFormat extends TestCase {
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private static final String rack1[] = new String[] {
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@ -476,23 +483,23 @@ public class TestCombineFileInputFormat extends TestCase {
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assertEquals(BLOCKSIZE, fileSplit.getLength(1));
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assertEquals("host3.rack3.com", fileSplit.getLocations()[0]);
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fileSplit = (CombineFileSplit) splits.get(1);
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assertEquals(file3.getName(), fileSplit.getPath(0).getName());
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assertEquals(2 * BLOCKSIZE, fileSplit.getOffset(0));
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assertEquals(file2.getName(), fileSplit.getPath(0).getName());
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assertEquals(0, fileSplit.getOffset(0));
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assertEquals(BLOCKSIZE, fileSplit.getLength(0));
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assertEquals(file4.getName(), fileSplit.getPath(1).getName());
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assertEquals(0, fileSplit.getOffset(1));
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assertEquals(file2.getName(), fileSplit.getPath(1).getName());
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assertEquals(BLOCKSIZE, fileSplit.getOffset(1));
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assertEquals(BLOCKSIZE, fileSplit.getLength(1));
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assertEquals("host3.rack3.com", fileSplit.getLocations()[0]);
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assertEquals("host2.rack2.com", fileSplit.getLocations()[0]);
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fileSplit = (CombineFileSplit) splits.get(2);
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assertEquals(2, fileSplit.getNumPaths());
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assertEquals(1, fileSplit.getLocations().length);
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assertEquals(file4.getName(), fileSplit.getPath(0).getName());
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assertEquals(BLOCKSIZE, fileSplit.getOffset(0));
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assertEquals(file1.getName(), fileSplit.getPath(0).getName());
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assertEquals(0, fileSplit.getOffset(0));
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assertEquals(BLOCKSIZE, fileSplit.getLength(0));
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assertEquals(file4.getName(), fileSplit.getPath(1).getName());
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assertEquals(file3.getName(), fileSplit.getPath(1).getName());
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assertEquals(2 * BLOCKSIZE, fileSplit.getOffset(1));
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assertEquals(BLOCKSIZE, fileSplit.getLength(1));
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assertEquals("host3.rack3.com", fileSplit.getLocations()[0]);
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assertEquals("host1.rack1.com", fileSplit.getLocations()[0]);
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// maximum split size is 3 blocks
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inFormat = new DummyInputFormat();
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@ -504,7 +511,7 @@ public class TestCombineFileInputFormat extends TestCase {
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for (InputSplit split : splits) {
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System.out.println("File split(Test5): " + split);
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}
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assertEquals(4, splits.size());
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assertEquals(3, splits.size());
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fileSplit = (CombineFileSplit) splits.get(0);
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assertEquals(3, fileSplit.getNumPaths());
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assertEquals(1, fileSplit.getLocations().length);
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@ -519,32 +526,28 @@ public class TestCombineFileInputFormat extends TestCase {
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assertEquals(BLOCKSIZE, fileSplit.getLength(2));
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assertEquals("host3.rack3.com", fileSplit.getLocations()[0]);
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fileSplit = (CombineFileSplit) splits.get(1);
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assertEquals(file4.getName(), fileSplit.getPath(0).getName());
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assertEquals(0, fileSplit.getOffset(0));
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assertEquals(BLOCKSIZE, fileSplit.getLength(0));
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assertEquals(file4.getName(), fileSplit.getPath(1).getName());
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assertEquals(BLOCKSIZE, fileSplit.getOffset(1));
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assertEquals(BLOCKSIZE, fileSplit.getLength(1));
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assertEquals(file4.getName(), fileSplit.getPath(2).getName());
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assertEquals( 2 * BLOCKSIZE, fileSplit.getOffset(2));
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assertEquals(BLOCKSIZE, fileSplit.getLength(2));
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assertEquals("host3.rack3.com", fileSplit.getLocations()[0]);
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fileSplit = (CombineFileSplit) splits.get(2);
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assertEquals(2, fileSplit.getNumPaths());
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assertEquals(1, fileSplit.getLocations().length);
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assertEquals(file2.getName(), fileSplit.getPath(0).getName());
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assertEquals(0, fileSplit.getOffset(0));
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assertEquals(BLOCKSIZE, fileSplit.getLength(0));
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assertEquals(file2.getName(), fileSplit.getPath(1).getName());
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assertEquals(BLOCKSIZE, fileSplit.getOffset(1));
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assertEquals(BLOCKSIZE, fileSplit.getLength(1));
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assertEquals(file4.getName(), fileSplit.getPath(2).getName());
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assertEquals(0, fileSplit.getOffset(2));
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assertEquals(BLOCKSIZE, fileSplit.getLength(2));
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assertEquals("host2.rack2.com", fileSplit.getLocations()[0]);
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fileSplit = (CombineFileSplit) splits.get(3);
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assertEquals(1, fileSplit.getNumPaths());
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fileSplit = (CombineFileSplit) splits.get(2);
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assertEquals(3, fileSplit.getNumPaths());
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assertEquals(1, fileSplit.getLocations().length);
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assertEquals(file1.getName(), fileSplit.getPath(0).getName());
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assertEquals(0, fileSplit.getOffset(0));
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assertEquals(BLOCKSIZE, fileSplit.getLength(0));
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assertEquals(file4.getName(), fileSplit.getPath(1).getName());
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assertEquals(BLOCKSIZE, fileSplit.getOffset(1));
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assertEquals(BLOCKSIZE, fileSplit.getLength(1));
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assertEquals(file4.getName(), fileSplit.getPath(2).getName());
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assertEquals(2*BLOCKSIZE, fileSplit.getOffset(2));
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assertEquals(BLOCKSIZE, fileSplit.getLength(2));
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assertEquals("host1.rack1.com", fileSplit.getLocations()[0]);
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// maximum split size is 4 blocks
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@ -713,6 +716,56 @@ public class TestCombineFileInputFormat extends TestCase {
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DFSTestUtil.waitReplication(fileSys, name, replication);
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}
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public void testNodeInputSplit() throws IOException, InterruptedException {
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// Regression test for MAPREDUCE-4892. There are 2 nodes with all blocks on
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// both nodes. The grouping ensures that both nodes get splits instead of
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// just the first node
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||||
DummyInputFormat inFormat = new DummyInputFormat();
|
||||
int numBlocks = 12;
|
||||
long totLength = 0;
|
||||
long blockSize = 100;
|
||||
long maxSize = 200;
|
||||
long minSizeNode = 50;
|
||||
long minSizeRack = 50;
|
||||
String[] locations = { "h1", "h2" };
|
||||
String[] racks = new String[0];
|
||||
Path path = new Path("hdfs://file");
|
||||
|
||||
OneBlockInfo[] blocks = new OneBlockInfo[numBlocks];
|
||||
for(int i=0; i<numBlocks; ++i) {
|
||||
blocks[i] = new OneBlockInfo(path, i*blockSize, blockSize, locations, racks);
|
||||
totLength += blockSize;
|
||||
}
|
||||
|
||||
List<InputSplit> splits = new ArrayList<InputSplit>();
|
||||
HashMap<String, Set<String>> rackToNodes =
|
||||
new HashMap<String, Set<String>>();
|
||||
HashMap<String, List<OneBlockInfo>> rackToBlocks =
|
||||
new HashMap<String, List<OneBlockInfo>>();
|
||||
HashMap<OneBlockInfo, String[]> blockToNodes =
|
||||
new HashMap<OneBlockInfo, String[]>();
|
||||
HashMap<String, List<OneBlockInfo>> nodeToBlocks =
|
||||
new HashMap<String, List<OneBlockInfo>>();
|
||||
|
||||
OneFileInfo.populateBlockInfo(blocks, rackToBlocks, blockToNodes,
|
||||
nodeToBlocks, rackToNodes);
|
||||
|
||||
inFormat.createSplits(nodeToBlocks, blockToNodes, rackToBlocks, totLength,
|
||||
maxSize, minSizeNode, minSizeRack, splits);
|
||||
|
||||
int expectedSplitCount = (int)(totLength/maxSize);
|
||||
Assert.assertEquals(expectedSplitCount, splits.size());
|
||||
HashMultiset<String> nodeSplits = HashMultiset.create();
|
||||
for(int i=0; i<expectedSplitCount; ++i) {
|
||||
InputSplit inSplit = splits.get(i);
|
||||
Assert.assertEquals(maxSize, inSplit.getLength());
|
||||
Assert.assertEquals(1, inSplit.getLocations().length);
|
||||
nodeSplits.add(inSplit.getLocations()[0]);
|
||||
}
|
||||
Assert.assertEquals(3, nodeSplits.count(locations[0]));
|
||||
Assert.assertEquals(3, nodeSplits.count(locations[1]));
|
||||
}
|
||||
|
||||
public void testSplitPlacementForCompressedFiles() throws Exception {
|
||||
MiniDFSCluster dfs = null;
|
||||
FileSystem fileSys = null;
|
||||
|
|
@ -889,24 +942,24 @@ public class TestCombineFileInputFormat extends TestCase {
|
|||
assertEquals(f3.getLen(), fileSplit.getLength(0));
|
||||
assertEquals(hosts3[0], fileSplit.getLocations()[0]); // should be on r3
|
||||
fileSplit = (CombineFileSplit) splits.get(1);
|
||||
assertEquals(file4.getName(), fileSplit.getPath(0).getName());
|
||||
assertEquals(0, fileSplit.getOffset(0));
|
||||
assertEquals(f4.getLen(), fileSplit.getLength(0));
|
||||
assertEquals(hosts3[0], fileSplit.getLocations()[0]); // should be on r3
|
||||
fileSplit = (CombineFileSplit) splits.get(2);
|
||||
assertEquals(1, fileSplit.getNumPaths());
|
||||
assertEquals(1, fileSplit.getLocations().length);
|
||||
assertEquals(file2.getName(), fileSplit.getPath(0).getName());
|
||||
assertEquals(0, fileSplit.getOffset(0));
|
||||
assertEquals(f2.getLen(), fileSplit.getLength(0));
|
||||
assertEquals(hosts2[0], fileSplit.getLocations()[0]); // should be on r2
|
||||
fileSplit = (CombineFileSplit) splits.get(3);
|
||||
assertEquals(hosts2[0], fileSplit.getLocations()[0]); // should be on r3
|
||||
fileSplit = (CombineFileSplit) splits.get(2);
|
||||
assertEquals(1, fileSplit.getNumPaths());
|
||||
assertEquals(1, fileSplit.getLocations().length);
|
||||
assertEquals(file1.getName(), fileSplit.getPath(0).getName());
|
||||
assertEquals(0, fileSplit.getOffset(0));
|
||||
assertEquals(f1.getLen(), fileSplit.getLength(0));
|
||||
assertEquals(hosts1[0], fileSplit.getLocations()[0]); // should be on r1
|
||||
assertEquals(hosts1[0], fileSplit.getLocations()[0]); // should be on r2
|
||||
fileSplit = (CombineFileSplit) splits.get(3);
|
||||
assertEquals(1, fileSplit.getNumPaths());
|
||||
assertEquals(1, fileSplit.getLocations().length);
|
||||
assertEquals(file4.getName(), fileSplit.getPath(0).getName());
|
||||
assertEquals(0, fileSplit.getOffset(0));
|
||||
assertEquals(f4.getLen(), fileSplit.getLength(0));
|
||||
assertEquals(hosts3[0], fileSplit.getLocations()[0]); // should be on r1
|
||||
|
||||
// maximum split size is twice file1's length
|
||||
inFormat = new DummyInputFormat();
|
||||
|
|
|
|||
Loading…
Reference in New Issue