HBASE-17373: Fixing bug in moving segments from compaction pipeline to snapshot
Signed-off-by: Michael Stack <stack@apache.org>
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@ -213,8 +213,10 @@ public class CompactingMemStore extends AbstractMemStore {
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}
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}
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// the getSegments() method is used for tests only
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@VisibleForTesting
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@Override
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public List<Segment> getSegments() {
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protected List<Segment> getSegments() {
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List<Segment> pipelineList = pipeline.getSegments();
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List<Segment> list = new ArrayList<Segment>(pipelineList.size() + 2);
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list.add(this.active);
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@ -266,6 +268,7 @@ public class CompactingMemStore extends AbstractMemStore {
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long order = pipelineList.size();
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// The list of elements in pipeline + the active element + the snapshot segment
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// TODO : This will change when the snapshot is made of more than one element
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// The order is the Segment ordinal
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List<KeyValueScanner> list = new ArrayList<KeyValueScanner>(pipelineList.size() + 2);
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list.add(this.active.getScanner(readPt, order + 1));
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for (Segment item : pipelineList) {
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@ -374,10 +377,18 @@ public class CompactingMemStore extends AbstractMemStore {
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}
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private void pushTailToSnapshot() {
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ImmutableSegment tail = pipeline.pullTail();
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if (!tail.isEmpty()) {
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this.snapshot = tail;
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VersionedSegmentsList segments = pipeline.getVersionedTail();
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pushToSnapshot(segments.getStoreSegments());
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pipeline.swap(segments,null,false); // do not close segments as they are in snapshot now
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}
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private void pushToSnapshot(List<ImmutableSegment> segments) {
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if(segments.isEmpty()) return;
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if(segments.size() == 1 && !segments.get(0).isEmpty()) {
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this.snapshot = segments.get(0);
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return;
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}
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// TODO else craete composite snapshot
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}
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private RegionServicesForStores getRegionServices() {
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@ -18,6 +18,7 @@
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*/
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package org.apache.hadoop.hbase.regionserver;
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import java.util.ArrayList;
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import java.util.Iterator;
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import java.util.LinkedList;
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import java.util.List;
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@ -45,18 +46,14 @@ public class CompactionPipeline {
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public final static long FIXED_OVERHEAD = ClassSize
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.align(ClassSize.OBJECT + (2 * ClassSize.REFERENCE) + Bytes.SIZEOF_LONG);
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public final static long DEEP_OVERHEAD = FIXED_OVERHEAD + ClassSize.LINKEDLIST;
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public final static long ENTRY_OVERHEAD = ClassSize.LINKEDLIST_ENTRY;
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private final RegionServicesForStores region;
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private LinkedList<ImmutableSegment> pipeline;
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private long version;
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private static final ImmutableSegment EMPTY_MEM_STORE_SEGMENT = SegmentFactory.instance()
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.createImmutableSegment((CellComparator) null);
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public CompactionPipeline(RegionServicesForStores region) {
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this.region = region;
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this.pipeline = new LinkedList<ImmutableSegment>();
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this.pipeline = new LinkedList<>();
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this.version = 0;
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}
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@ -68,31 +65,33 @@ public class CompactionPipeline {
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}
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}
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public ImmutableSegment pullTail() {
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public VersionedSegmentsList getVersionedList() {
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synchronized (pipeline){
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if(pipeline.isEmpty()) {
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return EMPTY_MEM_STORE_SEGMENT;
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}
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return removeLast();
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List<ImmutableSegment> segmentList = new ArrayList<>(pipeline);
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return new VersionedSegmentsList(segmentList, version);
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}
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}
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public VersionedSegmentsList getVersionedList() {
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public VersionedSegmentsList getVersionedTail() {
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synchronized (pipeline){
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LinkedList<ImmutableSegment> segmentList = new LinkedList<ImmutableSegment>(pipeline);
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VersionedSegmentsList res = new VersionedSegmentsList(segmentList, version);
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return res;
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List<ImmutableSegment> segmentList = new ArrayList<>();
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if(!pipeline.isEmpty()) {
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segmentList.add(0, pipeline.getLast());
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}
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return new VersionedSegmentsList(segmentList, version);
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}
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}
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/**
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* Swaps the versioned list at the tail of the pipeline with the new compacted segment.
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* Swapping only if there were no changes to the suffix of the list while it was compacted.
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* @param versionedList tail of the pipeline that was compacted
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* @param segment new compacted segment
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* Swaps the versioned list at the tail of the pipeline with a new segment.
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* Swapping only if there were no changes to the suffix of the list since the version list was
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* created.
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* @param versionedList suffix of the pipeline to be replaced can be tail or all the pipeline
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* @param segment new segment to replace the suffix. Can be null if the suffix just needs to be
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* removed.
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* @param closeSuffix whether to close the suffix (to release memory), as part of swapping it out
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* During index merge op this will be false and for compaction it will be true.
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* @return true iff swapped tail with new compacted segment
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* @return true iff swapped tail with new segment
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*/
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public boolean swap(
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VersionedSegmentsList versionedList, ImmutableSegment segment, boolean closeSuffix) {
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@ -106,26 +105,32 @@ public class CompactionPipeline {
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}
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suffix = versionedList.getStoreSegments();
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if (LOG.isDebugEnabled()) {
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LOG.debug("Swapping pipeline suffix with compacted item. "
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int count = 0;
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if(segment != null) {
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count = segment.getCellsCount();
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}
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LOG.debug("Swapping pipeline suffix. "
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+ "Just before the swap the number of segments in pipeline is:"
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+ versionedList.getStoreSegments().size()
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+ ", and the number of cells in new segment is:" + segment.getCellsCount());
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+ ", and the number of cells in new segment is:" + count);
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}
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swapSuffix(suffix,segment, closeSuffix);
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swapSuffix(suffix, segment, closeSuffix);
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}
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if (region != null) {
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if (closeSuffix && region != null) {
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// update the global memstore size counter
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long suffixDataSize = getSegmentsKeySize(suffix);
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long newDataSize = segment.keySize();
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long newDataSize = 0;
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if(segment != null) newDataSize = segment.keySize();
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long dataSizeDelta = suffixDataSize - newDataSize;
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long suffixHeapOverhead = getSegmentsHeapOverhead(suffix);
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long newHeapOverhead = segment.heapOverhead();
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long newHeapOverhead = 0;
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if(segment != null) newHeapOverhead = segment.heapOverhead();
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long heapOverheadDelta = suffixHeapOverhead - newHeapOverhead;
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region.addMemstoreSize(new MemstoreSize(-dataSizeDelta, -heapOverheadDelta));
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if (LOG.isDebugEnabled()) {
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LOG.debug("Suffix data size: " + suffixDataSize + " compacted item data size: "
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LOG.debug("Suffix data size: " + suffixDataSize + " new segment data size: "
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+ newDataSize + ". Suffix heap overhead: " + suffixHeapOverhead
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+ " compacted item heap overhead: " + newHeapOverhead);
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+ " new segment heap overhead: " + newHeapOverhead);
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}
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}
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return true;
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@ -193,8 +198,7 @@ public class CompactionPipeline {
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public List<Segment> getSegments() {
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synchronized (pipeline){
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List<Segment> res = new LinkedList<Segment>(pipeline);
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return res;
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return new LinkedList<>(pipeline);
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}
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}
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@ -230,12 +234,7 @@ public class CompactionPipeline {
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}
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}
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pipeline.removeAll(suffix);
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pipeline.addLast(segment);
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}
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private ImmutableSegment removeLast() {
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version++;
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return pipeline.removeLast();
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if(segment != null) pipeline.addLast(segment);
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}
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private boolean addFirst(ImmutableSegment segment) {
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@ -18,7 +18,6 @@
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*/
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package org.apache.hadoop.hbase.regionserver;
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import java.util.LinkedList;
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import java.util.List;
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import org.apache.hadoop.hbase.classification.InterfaceAudience;
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@ -36,10 +35,10 @@ import org.apache.hadoop.hbase.classification.InterfaceAudience;
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@InterfaceAudience.Private
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public class VersionedSegmentsList {
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private final LinkedList<ImmutableSegment> storeSegments;
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private final List<ImmutableSegment> storeSegments;
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private final long version;
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public VersionedSegmentsList(LinkedList<ImmutableSegment> storeSegments, long version) {
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public VersionedSegmentsList(List<ImmutableSegment> storeSegments, long version) {
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this.storeSegments = storeSegments;
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this.version = version;
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}
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@ -33,17 +33,18 @@ import java.util.concurrent.ExecutionException;
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import java.util.concurrent.ExecutorService;
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import java.util.concurrent.Executors;
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import java.util.concurrent.Future;
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import java.util.concurrent.ThreadLocalRandom;
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import java.util.concurrent.atomic.AtomicBoolean;
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import java.util.stream.Collectors;
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import java.util.stream.IntStream;
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import org.apache.commons.io.IOUtils;
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import org.apache.hadoop.hbase.HBaseTestingUtility;
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import org.apache.hadoop.hbase.HColumnDescriptor;
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import org.apache.hadoop.hbase.HRegionInfo;
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import org.apache.hadoop.hbase.ServerName;
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import org.apache.hadoop.hbase.TableName;
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import org.apache.hadoop.hbase.io.ByteBufferPool;
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import org.apache.hadoop.hbase.regionserver.CompactingMemStore;
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import org.apache.hadoop.hbase.regionserver.HRegion;
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import org.apache.hadoop.hbase.testclassification.ClientTests;
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import org.apache.hadoop.hbase.testclassification.LargeTests;
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@ -75,11 +76,18 @@ public class TestAsyncTableGetMultiThreaded {
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@BeforeClass
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public static void setUp() throws Exception {
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setUp(HColumnDescriptor.MemoryCompaction.NONE);
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}
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protected static void setUp(HColumnDescriptor.MemoryCompaction memoryCompaction) throws Exception {
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TEST_UTIL.getConfiguration().set(TABLES_ON_MASTER, "none");
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TEST_UTIL.getConfiguration().setLong(HBASE_CLIENT_META_OPERATION_TIMEOUT, 60000L);
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TEST_UTIL.getConfiguration().setLong(HBASE_RPC_READ_TIMEOUT_KEY, 1000L);
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TEST_UTIL.getConfiguration().setInt(HBASE_CLIENT_RETRIES_NUMBER, 1000);
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TEST_UTIL.getConfiguration().setInt(ByteBufferPool.MAX_POOL_SIZE_KEY, 100);
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TEST_UTIL.getConfiguration().set(CompactingMemStore.COMPACTING_MEMSTORE_TYPE_KEY,
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String.valueOf(memoryCompaction));
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TEST_UTIL.startMiniCluster(5);
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SPLIT_KEYS = new byte[8][];
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for (int i = 111; i < 999; i += 111) {
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@ -103,11 +111,13 @@ public class TestAsyncTableGetMultiThreaded {
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private void run(AtomicBoolean stop) throws InterruptedException, ExecutionException {
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while (!stop.get()) {
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int i = ThreadLocalRandom.current().nextInt(COUNT);
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assertEquals(i,
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Bytes.toInt(
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CONN.getRawTable(TABLE_NAME).get(new Get(Bytes.toBytes(String.format("%03d", i)))).get()
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.getValue(FAMILY, QUALIFIER)));
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for (int i = 0; i < COUNT; i++) {
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assertEquals(i,
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Bytes.toInt(
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CONN.getRawTable(TABLE_NAME).get(new Get(Bytes.toBytes(String.format("%03d", i))))
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.get()
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.getValue(FAMILY, QUALIFIER)));
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}
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}
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}
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@ -0,0 +1,35 @@
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/**
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* Licensed to the Apache Software Foundation (ASF) under one
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* or more contributor license agreements. See the NOTICE file
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* distributed with this work for additional information
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* regarding copyright ownership. The ASF licenses this file
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* to you under the Apache License, Version 2.0 (the
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* "License"); you may not use this file except in compliance
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* with the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package org.apache.hadoop.hbase.client;
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import org.apache.hadoop.hbase.HColumnDescriptor;
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import org.apache.hadoop.hbase.testclassification.ClientTests;
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import org.apache.hadoop.hbase.testclassification.LargeTests;
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import org.junit.BeforeClass;
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import org.junit.experimental.categories.Category;
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@Category({ LargeTests.class, ClientTests.class })
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public class TestAsyncTableGetMultiThreadedWithBasicCompaction extends
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TestAsyncTableGetMultiThreaded {
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@BeforeClass
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public static void setUp() throws Exception {
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setUp(HColumnDescriptor.MemoryCompaction.BASIC);
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}
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}
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@ -0,0 +1,35 @@
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/**
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* Licensed to the Apache Software Foundation (ASF) under one
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* or more contributor license agreements. See the NOTICE file
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* distributed with this work for additional information
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* regarding copyright ownership. The ASF licenses this file
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* to you under the Apache License, Version 2.0 (the
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* "License"); you may not use this file except in compliance
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* with the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package org.apache.hadoop.hbase.client;
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import org.apache.hadoop.hbase.HColumnDescriptor;
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import org.apache.hadoop.hbase.testclassification.ClientTests;
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import org.apache.hadoop.hbase.testclassification.LargeTests;
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import org.junit.BeforeClass;
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import org.junit.experimental.categories.Category;
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@Category({ LargeTests.class, ClientTests.class })
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public class TestAsyncTableGetMultiThreadedWithEagerCompaction extends
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TestAsyncTableGetMultiThreaded {
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@BeforeClass
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public static void setUp() throws Exception {
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setUp(HColumnDescriptor.MemoryCompaction.EAGER);
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}
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}
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