diff --git a/hbase-it/pom.xml b/hbase-it/pom.xml index 5642e3c778c..6df0b599fc8 100644 --- a/hbase-it/pom.xml +++ b/hbase-it/pom.xml @@ -258,7 +258,7 @@ org.apache.commons - commons-math + commons-math3 org.apache.commons @@ -273,6 +273,11 @@ javax.ws.rs-api test + + org.glassfish.jersey.core + jersey-client + ${jersey.version} + io.netty diff --git a/hbase-it/src/test/java/org/apache/hadoop/hbase/mttr/IntegrationTestMTTR.java b/hbase-it/src/test/java/org/apache/hadoop/hbase/mttr/IntegrationTestMTTR.java index 97a06f46be0..71e0d0b3f9f 100644 --- a/hbase-it/src/test/java/org/apache/hadoop/hbase/mttr/IntegrationTestMTTR.java +++ b/hbase-it/src/test/java/org/apache/hadoop/hbase/mttr/IntegrationTestMTTR.java @@ -32,7 +32,7 @@ import java.util.concurrent.TimeUnit; import org.apache.commons.lang3.RandomStringUtils; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import org.apache.commons.math.stat.descriptive.DescriptiveStatistics; +import org.apache.commons.math3.stat.descriptive.DescriptiveStatistics; import org.apache.hadoop.hbase.ClusterStatus; import org.apache.hadoop.hbase.HColumnDescriptor; import org.apache.hadoop.hbase.HTableDescriptor; diff --git a/hbase-resource-bundle/src/main/resources/META-INF/LICENSE.vm b/hbase-resource-bundle/src/main/resources/META-INF/LICENSE.vm index fcef3bbb60c..e1475a56aca 100644 --- a/hbase-resource-bundle/src/main/resources/META-INF/LICENSE.vm +++ b/hbase-resource-bundle/src/main/resources/META-INF/LICENSE.vm @@ -896,8 +896,7 @@ facade for Java, which can be obtained at: * http://www.slf4j.org/ #end ## Supplemental from commons-math -## parameter two-and-three true = updated to also cover commons-math 2, just 3 otherwise -#macro(commons_math_license $two-and-three) +#macro(commons_math_license) ---- APACHE COMMONS MATH DERIVATIVE WORKS: @@ -910,10 +909,6 @@ are reproduced below. For the lmder, lmpar and qrsolv Fortran routine from minpack and translated in the LevenbergMarquardtOptimizer class in package org.apache.commons.math3.optimization.general -#if(${two-and-three}) -and package -org.apache.commons.math.optimization.general -#end Original source copyright and license statement: Minpack Copyright Notice (1999) University of Chicago. All rights reserved @@ -972,9 +967,7 @@ POSSIBILITY OF SUCH LOSS OR DAMAGES. Copyright and license statement for the odex Fortran routine developed by E. Hairer and G. Wanner and translated in GraggBulirschStoerIntegrator class in package org.apache.commons.math3.ode.nonstiff: -#if(${two-and-three}) -and in package org.apache.commons.math.ode.nonstiff: -#end + Copyright (c) 2004, Ernst Hairer @@ -1002,58 +995,9 @@ NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. =============================================================================== -Copyright and license statement for the original lapack fortran routines -translated in EigenDecompositionImpl class in package -org.apache.commons.math3.linear: -#if(${two-and-three}) -and package -org.apache.commons.math.linear: -#end - -Copyright (c) 1992-2008 The University of Tennessee. All rights reserved. - -$COPYRIGHT$ - -Additional copyrights may follow - -$HEADER$ - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions are -met: - -- Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - -- Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer listed - in this license in the documentation and/or other materials - provided with the distribution. - -- Neither the name of the copyright holders nor the names of its - contributors may be used to endorse or promote products derived from - this software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS -"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT -LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR -A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT -OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, -SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT -LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, -DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY -THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT -(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE -OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. -=============================================================================== - Copyright and license statement for the original Mersenne twister C routines translated in MersenneTwister class in package org.apache.commons.math3.random: -#if(${two-and-three}) -and package -org.apache.commons.math.random: -#end Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura, All rights reserved. @@ -1087,191 +1031,103 @@ org.apache.commons.math.random: =============================================================================== -The class "org.apache.commons.math3.exception.util.LocalizedFormatsTest" is -an adapted version of "OrekitMessagesTest" test class for the Orekit library -The "org.apache.commons.math3.analysis.interpolation.HermiteInterpolator" -has been imported from the Orekit space flight dynamics library. - -Th Orekit library is described at: - https://www.orekit.org/forge/projects/orekit -The original files are distributed under the terms of the Apache 2 license -which is: Copyright 2010 CS Communication & Systèmes - -#end -## Supplemental from commons-math if just commons-math 2 is present -#macro(commons_math_two_license) ----- -APACHE COMMONS MATH DERIVATIVE WORKS: - -The Apache commons-math library includes a number of subcomponents -whose implementation is derived from original sources written -in C or Fortran. License terms of the original sources -are reproduced below. +The initial code for shuffling an array (originally in class +"org.apache.commons.math3.random.RandomDataGenerator", now replaced by +a method in class "org.apache.commons.math3.util.MathArrays") was +inspired from the algorithm description provided in +"Algorithms", by Ian Craw and John Pulham (University of Aberdeen 1999). +The textbook (containing a proof that the shuffle is uniformly random) is +available here: + http://citeseerx.ist.psu.edu/viewdoc/download;?doi=10.1.1.173.1898&rep=rep1&type=pdf =============================================================================== -For the lmder, lmpar and qrsolv Fortran routine from minpack and translated in -the LevenbergMarquardtOptimizer class in package -org.apache.commons.math.optimization.general -Original source copyright and license statement: +License statement for the direction numbers in the resource files for Sobol sequences. -Minpack Copyright Notice (1999) University of Chicago. All rights reserved +----------------------------------------------------------------------------- +Licence pertaining to sobol.cc and the accompanying sets of direction numbers -Redistribution and use in source and binary forms, with or -without modification, are permitted provided that the -following conditions are met: - -1. Redistributions of source code must retain the above -copyright notice, this list of conditions and the following -disclaimer. - -2. Redistributions in binary form must reproduce the above -copyright notice, this list of conditions and the following -disclaimer in the documentation and/or other materials -provided with the distribution. - -3. The end-user documentation included with the -redistribution, if any, must include the following -acknowledgment: - - "This product includes software developed by the - University of Chicago, as Operator of Argonne National - Laboratory. - -Alternately, this acknowledgment may appear in the software -itself, if and wherever such third-party acknowledgments -normally appear. - -4. WARRANTY DISCLAIMER. THE SOFTWARE IS SUPPLIED "AS IS" -WITHOUT WARRANTY OF ANY KIND. THE COPYRIGHT HOLDER, THE -UNITED STATES, THE UNITED STATES DEPARTMENT OF ENERGY, AND -THEIR EMPLOYEES: (1) DISCLAIM ANY WARRANTIES, EXPRESS OR -IMPLIED, INCLUDING BUT NOT LIMITED TO ANY IMPLIED WARRANTIES -OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE -OR NON-INFRINGEMENT, (2) DO NOT ASSUME ANY LEGAL LIABILITY -OR RESPONSIBILITY FOR THE ACCURACY, COMPLETENESS, OR -USEFULNESS OF THE SOFTWARE, (3) DO NOT REPRESENT THAT USE OF -THE SOFTWARE WOULD NOT INFRINGE PRIVATELY OWNED RIGHTS, (4) -DO NOT WARRANT THAT THE SOFTWARE WILL FUNCTION -UNINTERRUPTED, THAT IT IS ERROR-FREE OR THAT ANY ERRORS WILL -BE CORRECTED. - -5. LIMITATION OF LIABILITY. IN NO EVENT WILL THE COPYRIGHT -HOLDER, THE UNITED STATES, THE UNITED STATES DEPARTMENT OF -ENERGY, OR THEIR EMPLOYEES: BE LIABLE FOR ANY INDIRECT, -INCIDENTAL, CONSEQUENTIAL, SPECIAL OR PUNITIVE DAMAGES OF -ANY KIND OR NATURE, INCLUDING BUT NOT LIMITED TO LOSS OF -PROFITS OR LOSS OF DATA, FOR ANY REASON WHATSOEVER, WHETHER -SUCH LIABILITY IS ASSERTED ON THE BASIS OF CONTRACT, TORT -(INCLUDING NEGLIGENCE OR STRICT LIABILITY), OR OTHERWISE, -EVEN IF ANY OF SAID PARTIES HAS BEEN WARNED OF THE -POSSIBILITY OF SUCH LOSS OR DAMAGES. -=============================================================================== - -Copyright and license statement for the odex Fortran routine developed by -E. Hairer and G. Wanner and translated in GraggBulirschStoerIntegrator class -in package org.apache.commons.math.ode.nonstiff: - -Copyright (c) 2004, Ernst Hairer +----------------------------------------------------------------------------- +Copyright (c) 2008, Frances Y. Kuo and Stephen Joe +All rights reserved. Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions are -met: +modification, are permitted provided that the following conditions are met: -- Redistributions of source code must retain the above copyright -notice, this list of conditions and the following disclaimer. + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. -- Redistributions in binary form must reproduce the above copyright -notice, this list of conditions and the following disclaimer in the -documentation and/or other materials provided with the distribution. + * Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS -IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED -TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A -PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR -CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, -EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, -PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR -PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF -LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING -NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS + * Neither the names of the copyright holders nor the names of the + University of New South Wales and the University of Waikato + and its contributors may be used to endorse or promote products derived + from this software without specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS ``AS IS'' AND ANY +EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS BE LIABLE FOR ANY +DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES +(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; +LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND +ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. =============================================================================== -Copyright and license statement for the original lapack fortran routines -translated in EigenDecompositionImpl class in package -org.apache.commons.math.linear: - -Copyright (c) 1992-2008 The University of Tennessee. All rights reserved. - -$COPYRIGHT$ - -Additional copyrights may follow - -$HEADER$ - -Redistribution and use in source and binary forms, with or without -modification, are permitted provided that the following conditions are -met: - -- Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. - -- Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer listed - in this license in the documentation and/or other materials - provided with the distribution. - -- Neither the name of the copyright holders nor the names of its - contributors may be used to endorse or promote products derived from - this software without specific prior written permission. - -THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS -"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT -LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR -A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT -OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, -SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT -LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, -DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY -THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT -(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE -OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. +The initial commit of package "org.apache.commons.math3.ml.neuralnet" is +an adapted version of code developed in the context of the Data Processing +and Analysis Consortium (DPAC) of the "Gaia" project of the European Space +Agency (ESA). =============================================================================== -Copyright and license statement for the original Mersenne twister C -routines translated in MersenneTwister class in package -org.apache.commons.math.random: +The initial commit of the class "org.apache.commons.math3.special.BesselJ" is +an adapted version of code translated from the netlib Fortran program, rjbesl +http://www.netlib.org/specfun/rjbesl by R.J. Cody at Argonne National +Laboratory (USA). There is no license or copyright statement included with the +original Fortran sources. +=============================================================================== - Copyright (C) 1997 - 2002, Makoto Matsumoto and Takuji Nishimura, - All rights reserved. - Redistribution and use in source and binary forms, with or without - modification, are permitted provided that the following conditions - are met: +The BracketFinder (package org.apache.commons.math3.optimization.univariate) +and PowellOptimizer (package org.apache.commons.math3.optimization.general) +classes are based on the Python code in module "optimize.py" (version 0.5) +developed by Travis E. Oliphant for the SciPy library (http://www.scipy.org/) +Copyright © 2003-2009 SciPy Developers. - 1. Redistributions of source code must retain the above copyright - notice, this list of conditions and the following disclaimer. +SciPy license +Copyright © 2001, 2002 Enthought, Inc. +All rights reserved. - 2. Redistributions in binary form must reproduce the above copyright - notice, this list of conditions and the following disclaimer in the - documentation and/or other materials provided with the distribution. +Copyright © 2003-2013 SciPy Developers. +All rights reserved. - 3. The names of its contributors may not be used to endorse or promote - products derived from this software without specific prior written - permission. +Redistribution and use in source and binary forms, with or without +modification, are permitted provided that the following conditions are met: - THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS - "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT - LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR - A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR - CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, - EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, - PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR - PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF - LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING - NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS - SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. + * Redistributions of source code must retain the above copyright + notice, this list of conditions and the following disclaimer. + * Redistributions in binary form must reproduce the above copyright + notice, this list of conditions and the following disclaimer in the + documentation and/or other materials provided with the distribution. + + * Neither the name of Enthought nor the names of the SciPy Developers may + be used to endorse or promote products derived from this software without + specific prior written permission. + +THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS “AS IS” AND ANY +EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED +WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE +DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE FOR ANY +DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES +(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; +LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND +ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT +(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS +SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. =============================================================================== #end ## Hadoop supplemental @@ -1472,8 +1328,7 @@ You can redistribute it and/or modify it under either the terms of the ## gather up EPL 1.0 works #set($epl = []) ## track commons-math -#set($commons-math-two = false) -#set($commons-math-three = false) +#set($commons-math = false) ## track if we need jruby additionals. #set($jruby = false) ## track hadoops @@ -1518,11 +1373,8 @@ ${dep.scm.url} #end #set($aggregated=false) ## Check for our set of known dependencies that require manual LICENSE additions. -#if($dep.artifactId.equals("commons-math")) -#set($commons-math-two=true) -#end #if($dep.artifactId.equals("commons-math3")) -#set($commons-math-three=true) +#set($commons-math=true) #end #if($dep.artifactId.equals("jruby-complete")) #set($jruby=true) @@ -1625,10 +1477,8 @@ ${dep.scm.url} #if($hadoop) #hadoop_license() #end -#if($commons-math-three) -#commons_math_license($commons-math-two) -#elseif($commons-math-two) -#commons_math_two_license() +#if($commons-math) +#commons_math_license() #end #if(!(${mit.isEmpty()})) ==== diff --git a/hbase-server/pom.xml b/hbase-server/pom.xml index c1cb3a078bf..1d888d31f1b 100644 --- a/hbase-server/pom.xml +++ b/hbase-server/pom.xml @@ -545,7 +545,7 @@ org.apache.commons - commons-math + commons-math3 log4j diff --git a/hbase-server/src/test/java/org/apache/hadoop/hbase/HFilePerformanceEvaluation.java b/hbase-server/src/test/java/org/apache/hadoop/hbase/HFilePerformanceEvaluation.java index 02ef6950046..b50a2b8164f 100644 --- a/hbase-server/src/test/java/org/apache/hadoop/hbase/HFilePerformanceEvaluation.java +++ b/hbase-server/src/test/java/org/apache/hadoop/hbase/HFilePerformanceEvaluation.java @@ -24,8 +24,8 @@ import java.util.Random; import org.apache.commons.logging.Log; import org.apache.commons.logging.LogFactory; -import org.apache.commons.math.random.RandomData; -import org.apache.commons.math.random.RandomDataImpl; +import org.apache.commons.math3.random.RandomData; +import org.apache.commons.math3.random.RandomDataImpl; import org.apache.hadoop.conf.Configuration; import org.apache.hadoop.fs.FileSystem; import org.apache.hadoop.fs.Path; diff --git a/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/compactions/GaussianFileListGenerator.java b/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/compactions/GaussianFileListGenerator.java index fb8c30a3ffe..a2964fff185 100644 --- a/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/compactions/GaussianFileListGenerator.java +++ b/hbase-server/src/test/java/org/apache/hadoop/hbase/regionserver/compactions/GaussianFileListGenerator.java @@ -22,8 +22,8 @@ import java.util.ArrayList; import java.util.Iterator; import java.util.List; -import org.apache.commons.math.random.GaussianRandomGenerator; -import org.apache.commons.math.random.MersenneTwister; +import org.apache.commons.math3.random.GaussianRandomGenerator; +import org.apache.commons.math3.random.MersenneTwister; import org.apache.hadoop.hbase.regionserver.StoreFile; class GaussianFileListGenerator extends StoreFileListGenerator { diff --git a/pom.xml b/pom.xml index 69a189243b6..29a25055594 100755 --- a/pom.xml +++ b/pom.xml @@ -1391,7 +1391,7 @@ 2.5 3.6 1.2 - 2.2 + 3.6.1 3.3.6 4.1 @@ -1812,7 +1812,7 @@ org.apache.commons - commons-math + commons-math3 ${commons-math.version}