HBASE-26353 Support loadable dictionaries in hbase-compression-zstd (#3748)
ZStandard supports initialization of compressors and decompressors with a precomputed dictionary, which can dramatically improve and speed up compression of tables with small values. For more details, please see The Case For Small Data Compression https://github.com/facebook/zstd#the-case-for-small-data-compression Signed-off-by: Duo Zhang <zhangduo@apache.org>
This commit is contained in:
parent
8a6fed7b19
commit
bfa4584125
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@ -21,6 +21,8 @@ import org.apache.yetus.audience.InterfaceAudience;
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@InterfaceAudience.Private
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public class CompressionUtil {
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private CompressionUtil() { }
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/**
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* Round up to the next power of two, unless the value would become negative (ints
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* are signed), in which case just return Integer.MAX_VALUE.
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@ -0,0 +1,164 @@
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/*
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* Licensed to the Apache Software Foundation (ASF) under one or more
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* contributor license agreements. See the NOTICE file distributed with this
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* work for additional information regarding copyright ownership. The ASF
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* licenses this file to you under the Apache License, Version 2.0 (the
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* "License"); you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS, WITHOUT
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* WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the
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* License for the specific language governing permissions and limitations under
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* the License.
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*/
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package org.apache.hadoop.hbase.io.compress;
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import java.io.ByteArrayOutputStream;
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import java.io.FileNotFoundException;
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import java.io.IOException;
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import java.io.InputStream;
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import java.util.concurrent.ExecutionException;
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import java.util.concurrent.TimeUnit;
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import org.apache.hadoop.conf.Configuration;
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import org.apache.hadoop.fs.FSDataInputStream;
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import org.apache.hadoop.fs.FileStatus;
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import org.apache.hadoop.fs.FileSystem;
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import org.apache.hadoop.fs.Path;
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import org.apache.yetus.audience.InterfaceAudience;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.apache.hbase.thirdparty.com.google.common.cache.CacheBuilder;
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import org.apache.hbase.thirdparty.com.google.common.cache.CacheLoader;
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import org.apache.hbase.thirdparty.com.google.common.cache.LoadingCache;
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/**
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* A utility class for managing compressor/decompressor dictionary loading and caching of load
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* results. Useful for any codec that can support changing dictionaries at runtime,
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* such as ZStandard.
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*/
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@InterfaceAudience.Private
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public class DictionaryCache {
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public static final String DICTIONARY_MAX_SIZE_KEY = "hbase.io.compress.dictionary.max.size";
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public static final int DEFAULT_DICTIONARY_MAX_SIZE = 10 * 1024 * 1024;
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public static final String RESOURCE_SCHEME = "resource://";
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private static final Logger LOG = LoggerFactory.getLogger(DictionaryCache.class);
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private static volatile LoadingCache<String, byte[]> CACHE;
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private DictionaryCache() { }
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/**
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* Load a dictionary or return a previously cached load.
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* @param conf configuration
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* @param path the hadoop Path where the dictionary is located, as a String
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* @return the dictionary bytes if successful, null otherwise
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*/
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public static byte[] getDictionary(final Configuration conf, final String path)
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throws IOException {
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if (path == null || path.isEmpty()) {
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return null;
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}
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// Create the dictionary loading cache if we haven't already
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if (CACHE == null) {
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synchronized (DictionaryCache.class) {
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if (CACHE == null) {
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final int maxSize = conf.getInt(DICTIONARY_MAX_SIZE_KEY, DEFAULT_DICTIONARY_MAX_SIZE);
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CACHE = CacheBuilder.newBuilder()
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.maximumSize(100)
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.expireAfterAccess(10, TimeUnit.MINUTES)
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.build(
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new CacheLoader<String, byte[]>() {
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public byte[] load(String s) throws Exception {
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byte[] bytes;
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if (path.startsWith(RESOURCE_SCHEME)) {
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bytes = loadFromResource(conf, path, maxSize);
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} else {
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bytes = loadFromHadoopFs(conf, path, maxSize);
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}
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LOG.info("Loaded dictionary from {} (size {})", s, bytes.length);
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return bytes;
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}
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});
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}
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}
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}
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// Get or load the dictionary for the given path
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try {
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return CACHE.get(path);
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} catch (ExecutionException e) {
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throw new RuntimeException(e);
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}
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}
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// Visible for testing
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public static byte[] loadFromResource(final Configuration conf, final String s,
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final int maxSize) throws IOException {
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if (!s.startsWith(RESOURCE_SCHEME)) {
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throw new IllegalArgumentException("Path does not start with " + RESOURCE_SCHEME);
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}
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final String path = s.substring(RESOURCE_SCHEME.length(), s.length());
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final InputStream in = DictionaryCache.class.getClassLoader().getResourceAsStream(path);
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if (in == null) {
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throw new FileNotFoundException("Resource " + path + " not found");
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}
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final ByteArrayOutputStream baos = new ByteArrayOutputStream();
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final byte[] buffer = new byte[8192];
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try {
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int n, len = 0;
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do {
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n = in.read(buffer);
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if (n > 0) {
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len += n;
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if (len > maxSize) {
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throw new IllegalArgumentException("Dictionary " + s + " is too large" +
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", limit=" + maxSize);
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}
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baos.write(buffer, 0, n);
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}
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} while (n > 0);
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} finally {
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in.close();
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}
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return baos.toByteArray();
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}
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private static byte[] loadFromHadoopFs(final Configuration conf, final String s,
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final int maxSize) throws IOException {
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final Path path = new Path(s);
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final FileSystem fs = FileSystem.get(path.toUri(), conf);
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final FileStatus stat = fs.getFileStatus(path);
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if (!stat.isFile()) {
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throw new IllegalArgumentException(s + " is not a file");
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}
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if (stat.getLen() > maxSize) {
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throw new IllegalArgumentException("Dictionary " + s + " is too large" +
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", size=" + stat.getLen() + ", limit=" + maxSize);
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}
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final ByteArrayOutputStream baos = new ByteArrayOutputStream();
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final byte[] buffer = new byte[8192];
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try (final FSDataInputStream in = fs.open(path)) {
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int n;
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do {
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n = in.read(buffer);
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if (n > 0) {
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baos.write(buffer, 0, n);
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}
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} while (n > 0);
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}
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return baos.toByteArray();
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}
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// Visible for testing
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public static boolean contains(String dictionaryPath) {
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if (CACHE != null) {
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return CACHE.asMap().containsKey(dictionaryPath);
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}
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return false;
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}
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}
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@ -17,12 +17,10 @@
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package org.apache.hadoop.hbase.io.compress;
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import static org.junit.Assert.assertTrue;
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import java.io.ByteArrayInputStream;
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import java.io.ByteArrayOutputStream;
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import java.util.Arrays;
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import java.util.Random;
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import org.apache.hadoop.conf.Configurable;
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import org.apache.hadoop.hbase.util.Bytes;
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import org.apache.hadoop.hbase.util.EnvironmentEdgeManager;
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@ -31,6 +29,8 @@ import org.apache.hadoop.io.IOUtils;
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import org.apache.hadoop.io.compress.CompressionCodec;
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import org.apache.hadoop.io.compress.CompressionInputStream;
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import org.apache.hadoop.io.compress.CompressionOutputStream;
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import org.apache.hadoop.io.compress.Compressor;
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import org.apache.hadoop.io.compress.Decompressor;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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@ -39,11 +39,11 @@ public class CompressionTestBase {
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protected static final Logger LOG = LoggerFactory.getLogger(CompressionTestBase.class);
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static final int LARGE_SIZE = 10 * 1024 * 1024;
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static final int VERY_LARGE_SIZE = 100 * 1024 * 1024;
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static final int BLOCK_SIZE = 4096;
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protected static final int LARGE_SIZE = 10 * 1024 * 1024;
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protected static final int VERY_LARGE_SIZE = 100 * 1024 * 1024;
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protected static final int BLOCK_SIZE = 4096;
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static final byte[] SMALL_INPUT;
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protected static final byte[] SMALL_INPUT;
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static {
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// 1, 1, 2, 3, 5, 8, 13, 21, 34, 55, 89, 144, 233, 377, 610, 987, 1597
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SMALL_INPUT = new byte[1+1+2+3+5+8+13+21+34+55+89+144+233+377+610+987+1597];
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Arrays.fill(SMALL_INPUT, off, (off+=1597), (byte)'Q');
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}
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protected void codecTest(final CompressionCodec codec, final byte[][] input)
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throws Exception {
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protected void codecTest(final CompressionCodec codec, final byte[][] input) throws Exception {
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codecTest(codec, input, null);
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}
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protected void codecTest(final CompressionCodec codec, final byte[][] input,
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final Integer expectedCompressedSize) throws Exception {
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// We do this in Compression.java
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((Configurable)codec).getConf().setInt("io.file.buffer.size", 32 * 1024);
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// Compress
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ByteArrayOutputStream baos = new ByteArrayOutputStream();
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CompressionOutputStream out = codec.createOutputStream(baos);
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int inLen = 0;
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long start = EnvironmentEdgeManager.currentTime();
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Compressor compressor = codec.createCompressor();
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compressor.reinit(((Configurable)codec).getConf());
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ByteArrayOutputStream baos = new ByteArrayOutputStream();
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CompressionOutputStream out = codec.createOutputStream(baos, compressor);
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int inLen = 0;
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for (int i = 0; i < input.length; i++) {
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out.write(input[i]);
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inLen += input[i].length;
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final byte[] compressed = baos.toByteArray();
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LOG.info("{} compressed {} bytes to {} bytes in {} ms", codec.getClass().getSimpleName(),
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inLen, compressed.length, end - start);
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if (expectedCompressedSize != null) {
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assertTrue("Expected compressed size does not match: (expected=" + expectedCompressedSize +
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", actual=" + compressed.length + ")", expectedCompressedSize == compressed.length);
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}
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// Decompress
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final byte[] plain = new byte[inLen];
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CompressionInputStream in = codec.createInputStream(new ByteArrayInputStream(compressed));
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Decompressor decompressor = codec.createDecompressor();
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if (decompressor instanceof CanReinit) {
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((CanReinit)decompressor).reinit(((Configurable)codec).getConf());
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}
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CompressionInputStream in = codec.createInputStream(new ByteArrayInputStream(compressed),
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decompressor);
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start = EnvironmentEdgeManager.currentTime();
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IOUtils.readFully(in, plain, 0, plain.length);
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in.close();
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/**
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* Test with a large input (1MB) divided into blocks of 4KB.
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*/
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protected void codecLargeTest(final CompressionCodec codec, final double sigma) throws Exception {
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RandomDistribution.DiscreteRNG zipf =
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protected void codecLargeTest(final CompressionCodec codec, final double sigma)
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throws Exception {
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RandomDistribution.DiscreteRNG rng =
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new RandomDistribution.Zipf(new Random(), 0, Byte.MAX_VALUE, sigma);
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final byte[][] input = new byte[LARGE_SIZE/BLOCK_SIZE][BLOCK_SIZE];
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for (int i = 0; i < input.length; i++) {
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for (int j = 0; j < input[i].length; j++) {
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input[i][j] = (byte)zipf.nextInt();
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}
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}
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fill(rng, input);
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codecTest(codec, input);
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}
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/**
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* Test with a very large input (100MB) as a single input buffer.
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*/
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protected void codecVeryLargeTest(final CompressionCodec codec, final double sigma) throws Exception {
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RandomDistribution.DiscreteRNG zipf =
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protected void codecVeryLargeTest(final CompressionCodec codec, final double sigma)
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throws Exception {
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RandomDistribution.DiscreteRNG rng =
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new RandomDistribution.Zipf(new Random(), 0, Byte.MAX_VALUE, sigma);
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final byte[][] input = new byte[1][VERY_LARGE_SIZE];
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for (int i = 0; i < VERY_LARGE_SIZE; i++) {
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input[0][i] = (byte)zipf.nextInt();
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}
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fill(rng, input);
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codecTest(codec, input);
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}
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protected static void fill(RandomDistribution.DiscreteRNG rng, byte[][] input) {
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for (int i = 0; i < input.length; i++) {
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fill(rng, input[i]);
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}
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}
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protected static void fill(RandomDistribution.DiscreteRNG rng, byte[] input) {
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for (int i = 0; i < input.length; i++) {
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input[i] = (byte) rng.nextInt();
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}
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}
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}
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@ -22,6 +22,7 @@ import java.io.OutputStream;
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import org.apache.hadoop.conf.Configurable;
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import org.apache.hadoop.conf.Configuration;
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import org.apache.hadoop.fs.CommonConfigurationKeys;
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import org.apache.hadoop.hbase.io.compress.DictionaryCache;
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import org.apache.hadoop.io.compress.BlockCompressorStream;
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import org.apache.hadoop.io.compress.BlockDecompressorStream;
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import org.apache.hadoop.io.compress.CompressionCodec;
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@ -41,6 +42,7 @@ public class ZstdCodec implements Configurable, CompressionCodec {
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public static final String ZSTD_LEVEL_KEY = "hbase.io.compress.zstd.level";
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public static final String ZSTD_BUFFER_SIZE_KEY = "hbase.io.compress.zstd.buffersize";
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public static final String ZSTD_DICTIONARY_KEY = "hbase.io.compress.zstd.dictionary";
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private Configuration conf;
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@ -60,12 +62,12 @@ public class ZstdCodec implements Configurable, CompressionCodec {
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@Override
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public Compressor createCompressor() {
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return new ZstdCompressor(getLevel(conf), getBufferSize(conf));
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return new ZstdCompressor(getLevel(conf), getBufferSize(conf), getDictionary(conf));
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}
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@Override
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public Decompressor createDecompressor() {
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return new ZstdDecompressor(getBufferSize(conf));
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return new ZstdDecompressor(getBufferSize(conf), getDictionary(conf));
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}
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@Override
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@ -123,4 +125,13 @@ public class ZstdCodec implements Configurable, CompressionCodec {
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return size > 0 ? size : 256 * 1024; // Don't change this default
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}
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static byte[] getDictionary(final Configuration conf) {
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String path = conf.get(ZSTD_DICTIONARY_KEY);
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try {
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return DictionaryCache.getDictionary(conf, path);
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} catch (IOException e) {
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throw new RuntimeException("Unable to load dictionary at " + path, e);
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}
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}
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}
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@ -26,6 +26,7 @@ import org.apache.yetus.audience.InterfaceAudience;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.github.luben.zstd.Zstd;
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import com.github.luben.zstd.ZstdDictCompress;
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/**
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* Hadoop compressor glue for zstd-jni.
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@ -38,13 +39,21 @@ public class ZstdCompressor implements CanReinit, Compressor {
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protected ByteBuffer inBuf, outBuf;
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protected boolean finish, finished;
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protected long bytesRead, bytesWritten;
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protected ZstdDictCompress dict;
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ZstdCompressor(final int level, final int bufferSize) {
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ZstdCompressor(final int level, final int bufferSize, final byte[] dictionary) {
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this.level = level;
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this.bufferSize = bufferSize;
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this.inBuf = ByteBuffer.allocateDirect(bufferSize);
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this.outBuf = ByteBuffer.allocateDirect(bufferSize);
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this.outBuf.position(bufferSize);
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if (dictionary != null) {
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this.dict = new ZstdDictCompress(dictionary, level);
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}
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}
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ZstdCompressor(final int level, final int bufferSize) {
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this(level, bufferSize, null);
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}
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@Override
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@ -72,7 +81,12 @@ public class ZstdCompressor implements CanReinit, Compressor {
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} else {
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outBuf.clear();
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}
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int written = Zstd.compress(outBuf, inBuf, level);
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int written;
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if (dict != null) {
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written = Zstd.compress(outBuf, inBuf, dict);
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} else {
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written = Zstd.compress(outBuf, inBuf, level);
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}
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bytesWritten += written;
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inBuf.clear();
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LOG.trace("compress: compressed {} -> {} (level {})", uncompressed, written, level);
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@ -131,6 +145,11 @@ public class ZstdCompressor implements CanReinit, Compressor {
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if (conf != null) {
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// Level might have changed
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level = ZstdCodec.getLevel(conf);
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// Dictionary may have changed
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byte[] b = ZstdCodec.getDictionary(conf);
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if (b != null) {
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dict = new ZstdDictCompress(b, level);
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}
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// Buffer size might have changed
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int newBufferSize = ZstdCodec.getBufferSize(conf);
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if (bufferSize != newBufferSize) {
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@ -26,6 +26,7 @@ import org.apache.yetus.audience.InterfaceAudience;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import com.github.luben.zstd.Zstd;
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import com.github.luben.zstd.ZstdDictDecompress;
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/**
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* Hadoop decompressor glue for zstd-java.
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@ -38,12 +39,20 @@ public class ZstdDecompressor implements CanReinit, Decompressor {
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protected int bufferSize;
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protected int inLen;
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protected boolean finished;
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protected ZstdDictDecompress dict;
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ZstdDecompressor(final int bufferSize) {
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ZstdDecompressor(final int bufferSize, final byte[] dictionary) {
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this.bufferSize = bufferSize;
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this.inBuf = ByteBuffer.allocateDirect(bufferSize);
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this.outBuf = ByteBuffer.allocateDirect(bufferSize);
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this.outBuf.position(bufferSize);
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if (dictionary != null) {
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this.dict = new ZstdDictDecompress(dictionary);
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}
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}
|
||||
|
||||
ZstdDecompressor(final int bufferSize) {
|
||||
this(bufferSize, null);
|
||||
}
|
||||
|
||||
@Override
|
||||
|
@ -60,7 +69,11 @@ public class ZstdDecompressor implements CanReinit, Decompressor {
|
|||
inLen -= remaining;
|
||||
outBuf.clear();
|
||||
int written;
|
||||
written = Zstd.decompress(outBuf, inBuf);
|
||||
if (dict != null) {
|
||||
written = Zstd.decompress(outBuf, inBuf, dict);
|
||||
} else {
|
||||
written = Zstd.decompress(outBuf, inBuf);
|
||||
}
|
||||
inBuf.clear();
|
||||
LOG.trace("decompress: decompressed {} -> {}", remaining, written);
|
||||
outBuf.flip();
|
||||
|
@ -117,7 +130,7 @@ public class ZstdDecompressor implements CanReinit, Decompressor {
|
|||
@Override
|
||||
public void setDictionary(final byte[] b, final int off, final int len) {
|
||||
LOG.trace("setDictionary: off={} len={}", off, len);
|
||||
throw new UnsupportedOperationException("setDictionary not supported");
|
||||
this.dict = new ZstdDictDecompress(b, off, len);
|
||||
}
|
||||
|
||||
@Override
|
||||
|
@ -143,6 +156,11 @@ public class ZstdDecompressor implements CanReinit, Decompressor {
|
|||
public void reinit(final Configuration conf) {
|
||||
LOG.trace("reinit");
|
||||
if (conf != null) {
|
||||
// Dictionary may have changed
|
||||
byte[] b = ZstdCodec.getDictionary(conf);
|
||||
if (b != null) {
|
||||
dict = new ZstdDictDecompress(b);
|
||||
}
|
||||
// Buffer size might have changed
|
||||
int newBufferSize = ZstdCodec.getBufferSize(conf);
|
||||
if (bufferSize != newBufferSize) {
|
||||
|
|
|
@ -16,11 +16,20 @@
|
|||
*/
|
||||
package org.apache.hadoop.hbase.io.compress.zstd;
|
||||
|
||||
import static org.junit.Assert.assertNotNull;
|
||||
import static org.junit.Assert.assertTrue;
|
||||
import java.io.File;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.util.Random;
|
||||
import org.apache.hadoop.conf.Configuration;
|
||||
import org.apache.hadoop.fs.CommonConfigurationKeys;
|
||||
import org.apache.hadoop.hbase.HBaseClassTestRule;
|
||||
import org.apache.hadoop.hbase.HBaseConfiguration;
|
||||
import org.apache.hadoop.hbase.io.compress.CompressionTestBase;
|
||||
import org.apache.hadoop.hbase.io.compress.DictionaryCache;
|
||||
import org.apache.hadoop.hbase.testclassification.SmallTests;
|
||||
import org.apache.hadoop.hbase.util.RandomDistribution;
|
||||
import org.junit.ClassRule;
|
||||
import org.junit.Test;
|
||||
import org.junit.experimental.categories.Category;
|
||||
|
@ -33,20 +42,20 @@ public class TestZstdCodec extends CompressionTestBase {
|
|||
HBaseClassTestRule.forClass(TestZstdCodec.class);
|
||||
|
||||
@Test
|
||||
public void testzstdCodecSmall() throws Exception {
|
||||
public void testZstdCodecSmall() throws Exception {
|
||||
codecSmallTest(new ZstdCodec());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testzstdCodecLarge() throws Exception {
|
||||
public void testZstdCodecLarge() throws Exception {
|
||||
codecLargeTest(new ZstdCodec(), 1.1); // poor compressability
|
||||
codecLargeTest(new ZstdCodec(), 2);
|
||||
codecLargeTest(new ZstdCodec(), 10); // very high compressability
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testzstdCodecVeryLarge() throws Exception {
|
||||
Configuration conf = new Configuration();
|
||||
public void testZstdCodecVeryLarge() throws Exception {
|
||||
Configuration conf = HBaseConfiguration.create();
|
||||
// ZStandard levels range from 1 to 22.
|
||||
// Level 22 might take up to a minute to complete. 3 is the Hadoop default, and will be fast.
|
||||
conf.setInt(CommonConfigurationKeys.IO_COMPRESSION_CODEC_ZSTD_LEVEL_KEY, 3);
|
||||
|
@ -55,4 +64,55 @@ public class TestZstdCodec extends CompressionTestBase {
|
|||
codecVeryLargeTest(codec, 3); // like text
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testZstdCodecWithDictionary() throws Exception {
|
||||
// zstd.test.data compressed with zstd.test.dict at level 3 will produce a result of
|
||||
// 365533 bytes
|
||||
final int expectedCompressedSize = 365533;
|
||||
Configuration conf = HBaseConfiguration.create();
|
||||
conf.setInt(CommonConfigurationKeys.IO_COMPRESSION_CODEC_ZSTD_LEVEL_KEY, 3);
|
||||
// Configure for dictionary available in test resources
|
||||
final String dictionaryPath = DictionaryCache.RESOURCE_SCHEME + "zstd.test.dict";
|
||||
conf.set(ZstdCodec.ZSTD_DICTIONARY_KEY, dictionaryPath);
|
||||
// Load test data from test resources
|
||||
// This will throw an IOException if the test data cannot be loaded
|
||||
final byte[] testData = DictionaryCache.loadFromResource(conf,
|
||||
DictionaryCache.RESOURCE_SCHEME + "zstd.test.data", /* maxSize */ 1024*1024);
|
||||
assertNotNull("Failed to load test data", testData);
|
||||
// Run the test
|
||||
// This will throw an IOException of some kind if there is a problem loading or using the
|
||||
// dictionary.
|
||||
ZstdCodec codec = new ZstdCodec();
|
||||
codec.setConf(conf);
|
||||
codecTest(codec, new byte[][] { testData }, expectedCompressedSize);
|
||||
// Assert that the dictionary was actually loaded
|
||||
assertTrue("Dictionary was not loaded by codec", DictionaryCache.contains(dictionaryPath));
|
||||
}
|
||||
|
||||
//
|
||||
// For generating the test data in src/test/resources/
|
||||
//
|
||||
|
||||
public static void main(String[] args) throws IOException {
|
||||
// Write 1000 1k blocks for training to the specified file
|
||||
// Train with:
|
||||
// zstd --train-fastcover=k=32,b=8 -B1024 -o <dictionary_file> <input_file>
|
||||
if (args.length < 1) {
|
||||
System.err.println("Usage: TestZstdCodec <outFile>");
|
||||
System.exit(-1);
|
||||
}
|
||||
final RandomDistribution.DiscreteRNG rng =
|
||||
new RandomDistribution.Zipf(new Random(), 0, Byte.MAX_VALUE, 2);
|
||||
final File outFile = new File(args[0]);
|
||||
final byte[] buffer = new byte[1024];
|
||||
System.out.println("Generating " + outFile);
|
||||
try (FileOutputStream os = new FileOutputStream(outFile)) {
|
||||
for (int i = 0; i < 1000; i++) {
|
||||
fill(rng, buffer);
|
||||
os.write(buffer);
|
||||
}
|
||||
}
|
||||
System.out.println("Done");
|
||||
}
|
||||
|
||||
}
|
||||
|
|
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Reference in New Issue