mirror of https://github.com/apache/lucene.git
SOLR-11737: Add kmeans Stream Evaluator to support kmeans clustering
This commit is contained in:
parent
d99bfa4bdb
commit
a08f71279c
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@ -296,6 +296,15 @@ public class StreamHandler extends RequestHandlerBase implements SolrCoreAware,
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.withFunctionName("getColumnLabels", GetColumnLabelsEvaluator.class)
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.withFunctionName("getRowLabels", GetRowLabelsEvaluator.class)
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.withFunctionName("getAttribute", GetAttributeEvaluator.class)
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.withFunctionName("kmeans", KmeansEvaluator.class)
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.withFunctionName("getCentroids", GetCentroidsEvaluator.class)
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.withFunctionName("getCluster", GetClusterEvaluator.class)
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.withFunctionName("topFeatures", TopFeaturesEvaluator.class)
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.withFunctionName("featureSelect", FeatureSelectEvaluator.class)
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.withFunctionName("rowAt", RowAtEvaluator.class)
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.withFunctionName("colAt", ColumnAtEvaluator.class)
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.withFunctionName("setColumnLabels", SetColumnLabelsEvaluator.class)
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.withFunctionName("setRowLabels", SetRowLabelsEvaluator.class)
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// Boolean Stream Evaluators
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@ -0,0 +1,55 @@
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/*
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* Licensed to the Apache Software Foundation (ASF) under one or more
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* contributor license agreements. See the NOTICE file distributed with
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* this work for additional information regarding copyright ownership.
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* The ASF licenses this file to You under the Apache License, Version 2.0
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* (the "License"); you may not use this file except in compliance with
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* the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package org.apache.solr.client.solrj.io.eval;
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import java.io.IOException;
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import java.util.Locale;
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import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
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import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
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import java.util.List;
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import java.util.ArrayList;
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public class ColumnAtEvaluator extends RecursiveObjectEvaluator implements TwoValueWorker {
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protected static final long serialVersionUID = 1L;
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public ColumnAtEvaluator(StreamExpression expression, StreamFactory factory) throws IOException{
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super(expression, factory);
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if(2 != containedEvaluators.size()){
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throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - expecting exactly 2 values but found %d",expression,containedEvaluators.size()));
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}
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}
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@Override
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public Object doWork(Object value1, Object value2) throws IOException {
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if(value1 instanceof Matrix) {
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Matrix matrix = (Matrix) value1;
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Number index = (Number) value2;
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double[][] data = matrix.getData();
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List<Number> list = new ArrayList();
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for(double[] row : data) {
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list.add(row[index.intValue()]);
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}
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return list;
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} else {
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throw new IOException("The rowAt function expects a matrix as the first parameter");
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}
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}
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}
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@ -0,0 +1,93 @@
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/*
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* Licensed to the Apache Software Foundation (ASF) under one or more
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* contributor license agreements. See the NOTICE file distributed with
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* this work for additional information regarding copyright ownership.
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* The ASF licenses this file to You under the Apache License, Version 2.0
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* (the "License"); you may not use this file except in compliance with
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* the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package org.apache.solr.client.solrj.io.eval;
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import java.io.IOException;
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import java.util.HashSet;
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import java.util.Locale;
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import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
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import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
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import java.util.List;
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import java.util.Set;
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import java.util.ArrayList;
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public class FeatureSelectEvaluator extends RecursiveObjectEvaluator implements TwoValueWorker {
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protected static final long serialVersionUID = 1L;
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public FeatureSelectEvaluator(StreamExpression expression, StreamFactory factory) throws IOException{
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super(expression, factory);
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if(2 != containedEvaluators.size()){
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throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - expecting exactly 2 values but found %d",expression,containedEvaluators.size()));
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}
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}
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@Override
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public Object doWork(Object value1, Object value2) throws IOException {
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if(value1 instanceof Matrix) {
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Matrix matrix = (Matrix) value1;
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double[][] data = matrix.getData();
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List<String> labels = matrix.getColumnLabels();
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Set<String> features = new HashSet();
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loadFeatures(value2, features);
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List<String> newColumnLabels = new ArrayList();
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for(String label : labels) {
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if(features.contains(label)) {
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newColumnLabels.add(label);
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}
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}
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double[][] selectFeatures = new double[data.length][newColumnLabels.size()];
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for(int i=0; i<data.length; i++) {
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double[] currentRow = data[i];
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double[] newRow = new double[newColumnLabels.size()];
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int index = -1;
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for(int l=0; l<currentRow.length; l++) {
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String label = labels.get(l);
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if(features.contains(label)) {
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newRow[++index] = currentRow[l];
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}
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}
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selectFeatures[i] = newRow;
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}
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Matrix newMatrix = new Matrix(selectFeatures);
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newMatrix.setRowLabels(matrix.getRowLabels());
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newMatrix.setColumnLabels(newColumnLabels);
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return newMatrix;
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} else {
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throw new IOException("The featureSelect function expects a matrix as a parameter");
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}
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}
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private void loadFeatures(Object o, Set<String> features) {
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List list = (List)o;
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for(Object v : list) {
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if(v instanceof List) {
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loadFeatures(v, features);
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} else {
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features.add((String)v);
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}
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}
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}
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}
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@ -0,0 +1,55 @@
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/*
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* Licensed to the Apache Software Foundation (ASF) under one or more
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* contributor license agreements. See the NOTICE file distributed with
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* this work for additional information regarding copyright ownership.
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* The ASF licenses this file to You under the Apache License, Version 2.0
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* (the "License"); you may not use this file except in compliance with
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* the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package org.apache.solr.client.solrj.io.eval;
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import java.io.IOException;
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import java.util.Locale;
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import java.util.List;
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import org.apache.commons.math3.ml.clustering.CentroidCluster;
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import org.apache.commons.math3.ml.clustering.Clusterable;
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import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
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import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
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public class GetCentroidsEvaluator extends RecursiveObjectEvaluator implements OneValueWorker {
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private static final long serialVersionUID = 1;
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public GetCentroidsEvaluator(StreamExpression expression, StreamFactory factory) throws IOException {
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super(expression, factory);
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}
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@Override
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public Object doWork(Object value) throws IOException {
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if(!(value instanceof KmeansEvaluator.ClusterTuple)){
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throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - found type %s for value, expecting a clustering result",toExpression(constructingFactory), value.getClass().getSimpleName()));
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} else {
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KmeansEvaluator.ClusterTuple clusterTuple = (KmeansEvaluator.ClusterTuple)value;
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List<CentroidCluster<KmeansEvaluator.ClusterPoint>> clusters = clusterTuple.getClusters();
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double[][] data = new double[clusters.size()][];
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for(int i=0; i<clusters.size(); i++) {
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CentroidCluster<KmeansEvaluator.ClusterPoint> centroidCluster = clusters.get(i);
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Clusterable clusterable = centroidCluster.getCenter();
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data[i] = clusterable.getPoint();
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}
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Matrix centroids = new Matrix(data);
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centroids.setColumnLabels(clusterTuple.getColumnLabels());
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return centroids;
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}
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}
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}
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@ -0,0 +1,64 @@
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/*
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* Licensed to the Apache Software Foundation (ASF) under one or more
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* contributor license agreements. See the NOTICE file distributed with
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* this work for additional information regarding copyright ownership.
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* The ASF licenses this file to You under the Apache License, Version 2.0
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* (the "License"); you may not use this file except in compliance with
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* the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package org.apache.solr.client.solrj.io.eval;
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import java.io.IOException;
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import java.util.Locale;
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import java.util.List;
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import java.util.ArrayList;
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import org.apache.commons.math3.ml.clustering.CentroidCluster;
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import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
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import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
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public class GetClusterEvaluator extends RecursiveObjectEvaluator implements TwoValueWorker {
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private static final long serialVersionUID = 1;
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public GetClusterEvaluator(StreamExpression expression, StreamFactory factory) throws IOException {
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super(expression, factory);
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}
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@Override
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public Object doWork(Object value1, Object value2) throws IOException {
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if(!(value1 instanceof KmeansEvaluator.ClusterTuple)){
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throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - found type %s for value, expecting a cluster result.",toExpression(constructingFactory), value1.getClass().getSimpleName()));
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} else {
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KmeansEvaluator.ClusterTuple clusterTuple = (KmeansEvaluator.ClusterTuple)value1;
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List<CentroidCluster<KmeansEvaluator.ClusterPoint>> clusters = clusterTuple.getClusters();
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Number index = (Number)value2;
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CentroidCluster cluster = clusters.get(index.intValue());
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List points = cluster.getPoints();
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List<String> rowLabels = new ArrayList();
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double[][] data = new double[points.size()][];
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for(int i=0; i<points.size(); i++) {
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KmeansEvaluator.ClusterPoint p = (KmeansEvaluator.ClusterPoint)points.get(i);
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data[i] = p.getPoint();
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rowLabels.add(p.getId());
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}
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Matrix matrix = new Matrix(data);
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matrix.setRowLabels(rowLabels);
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matrix.setColumnLabels(clusterTuple.getColumnLabels());
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return matrix;
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}
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}
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}
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@ -0,0 +1,135 @@
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/*
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* Licensed to the Apache Software Foundation (ASF) under one or more
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* contributor license agreements. See the NOTICE file distributed with
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* this work for additional information regarding copyright ownership.
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* The ASF licenses this file to You under the Apache License, Version 2.0
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* (the "License"); you may not use this file except in compliance with
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* the License. You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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*/
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package org.apache.solr.client.solrj.io.eval;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Map;
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import java.util.HashMap;
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import org.apache.commons.math3.ml.clustering.CentroidCluster;
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import org.apache.solr.client.solrj.io.Tuple;
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import org.apache.commons.math3.ml.clustering.Clusterable;
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import org.apache.commons.math3.ml.clustering.KMeansPlusPlusClusterer;
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import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
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import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
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public class KmeansEvaluator extends RecursiveObjectEvaluator implements ManyValueWorker {
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protected static final long serialVersionUID = 1L;
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public KmeansEvaluator(StreamExpression expression, StreamFactory factory) throws IOException{
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super(expression, factory);
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}
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@Override
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public Object doWork(Object... values) throws IOException {
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if(values.length < 2) {
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throw new IOException("kmeans expects atleast two parameters a Matrix of observations and k");
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}
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Matrix matrix = null;
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int k = 0;
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int maxIterations = 1000;
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if(values[0] instanceof Matrix) {
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matrix = (Matrix)values[0];
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} else {
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throw new IOException("The first parameter for kmeans should be the observation matrix.");
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}
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if(values[1] instanceof Number) {
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k = ((Number)values[1]).intValue();
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} else {
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throw new IOException("The second parameter for kmeans should be k.");
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}
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if(values.length == 3) {
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maxIterations = ((Number)values[2]).intValue();
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}
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KMeansPlusPlusClusterer<ClusterPoint> kmeans = new KMeansPlusPlusClusterer(k, maxIterations);
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List<ClusterPoint> points = new ArrayList();
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double[][] data = matrix.getData();
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List<String> ids = matrix.getRowLabels();
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for(int i=0; i<data.length; i++) {
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double[] vec = data[i];
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points.add(new ClusterPoint(ids.get(i), vec));
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}
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Map fields = new HashMap();
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fields.put("k", k);
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fields.put("distance", "euclidean");
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fields.put("maxIterations", maxIterations);
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return new ClusterTuple(fields, kmeans.cluster(points), matrix.getColumnLabels());
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}
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public static class ClusterPoint implements Clusterable {
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private double[] point;
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private String id;
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public ClusterPoint(String id, double[] point) {
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this.id = id;
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this.point = point;
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}
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public double[] getPoint() {
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return this.point;
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}
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public String getId() {
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return this.id;
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}
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}
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public static class ClusterTuple extends Tuple {
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private List<String> columnLabels;
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private List<CentroidCluster<ClusterPoint>> clusters;
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public ClusterTuple(Map fields,
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List<CentroidCluster<ClusterPoint>> clusters,
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List<String> columnLabels) {
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super(fields);
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this.clusters = clusters;
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this.columnLabels = columnLabels;
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}
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public List<String> getColumnLabels() {
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return this.columnLabels;
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}
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public List<CentroidCluster<ClusterPoint>> getClusters() {
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return this.clusters;
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}
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}
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}
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@ -0,0 +1,56 @@
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/*
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* Licensed to the Apache Software Foundation (ASF) under one or more
|
||||
* contributor license agreements. See the NOTICE file distributed with
|
||||
* this work for additional information regarding copyright ownership.
|
||||
* The ASF licenses this file to You under the Apache License, Version 2.0
|
||||
* (the "License"); you may not use this file except in compliance with
|
||||
* the License. You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
*/
|
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package org.apache.solr.client.solrj.io.eval;
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import java.io.IOException;
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import java.util.Locale;
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import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
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import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
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import java.util.List;
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import java.util.ArrayList;
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public class RowAtEvaluator extends RecursiveObjectEvaluator implements TwoValueWorker {
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protected static final long serialVersionUID = 1L;
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public RowAtEvaluator(StreamExpression expression, StreamFactory factory) throws IOException{
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super(expression, factory);
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|
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if(2 != containedEvaluators.size()){
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throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - expecting exactly 2 values but found %d",expression,containedEvaluators.size()));
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}
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}
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@Override
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public Object doWork(Object value1, Object value2) throws IOException {
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if(value1 instanceof Matrix) {
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Matrix matrix = (Matrix) value1;
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Number index = (Number) value2;
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double[] row = matrix.getData()[index.intValue()];
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List<Number> list = new ArrayList();
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for(double d : row) {
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list.add(d);
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}
|
||||
|
||||
return list;
|
||||
} else {
|
||||
throw new IOException("The rowAt function expects a matrix as the first parameter");
|
||||
}
|
||||
}
|
||||
}
|
|
@ -0,0 +1,47 @@
|
|||
/*
|
||||
* Licensed to the Apache Software Foundation (ASF) under one or more
|
||||
* contributor license agreements. See the NOTICE file distributed with
|
||||
* this work for additional information regarding copyright ownership.
|
||||
* The ASF licenses this file to You under the Apache License, Version 2.0
|
||||
* (the "License"); you may not use this file except in compliance with
|
||||
* the License. You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
*/
|
||||
|
||||
package org.apache.solr.client.solrj.io.eval;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.Locale;
|
||||
import java.util.List;
|
||||
|
||||
import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
|
||||
import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
|
||||
|
||||
public class SetColumnLabelsEvaluator extends RecursiveObjectEvaluator implements TwoValueWorker {
|
||||
private static final long serialVersionUID = 1;
|
||||
|
||||
public SetColumnLabelsEvaluator(StreamExpression expression, StreamFactory factory) throws IOException {
|
||||
super(expression, factory);
|
||||
}
|
||||
|
||||
@Override
|
||||
public Object doWork(Object value1, Object value2) throws IOException {
|
||||
if(!(value1 instanceof Matrix)){
|
||||
throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - found type %s for value, expecting a Matrix",toExpression(constructingFactory), value1.getClass().getSimpleName()));
|
||||
} else if(!(value2 instanceof List)) {
|
||||
throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - found type %s for value, expecting an array of labels.",toExpression(constructingFactory), value2.getClass().getSimpleName()));
|
||||
} else {
|
||||
Matrix matrix = (Matrix)value1;
|
||||
List<String> colLabels = (List<String>)value2;
|
||||
matrix.setColumnLabels(colLabels);
|
||||
return matrix;
|
||||
}
|
||||
}
|
||||
}
|
|
@ -0,0 +1,47 @@
|
|||
/*
|
||||
* Licensed to the Apache Software Foundation (ASF) under one or more
|
||||
* contributor license agreements. See the NOTICE file distributed with
|
||||
* this work for additional information regarding copyright ownership.
|
||||
* The ASF licenses this file to You under the Apache License, Version 2.0
|
||||
* (the "License"); you may not use this file except in compliance with
|
||||
* the License. You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
*/
|
||||
|
||||
package org.apache.solr.client.solrj.io.eval;
|
||||
|
||||
import java.io.IOException;
|
||||
import java.util.Locale;
|
||||
import java.util.List;
|
||||
|
||||
import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
|
||||
import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
|
||||
|
||||
public class SetRowLabelsEvaluator extends RecursiveObjectEvaluator implements TwoValueWorker {
|
||||
private static final long serialVersionUID = 1;
|
||||
|
||||
public SetRowLabelsEvaluator(StreamExpression expression, StreamFactory factory) throws IOException {
|
||||
super(expression, factory);
|
||||
}
|
||||
|
||||
@Override
|
||||
public Object doWork(Object value1, Object value2) throws IOException {
|
||||
if(!(value1 instanceof Matrix)){
|
||||
throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - found type %s for value, expecting a Matrix",toExpression(constructingFactory), value1.getClass().getSimpleName()));
|
||||
} else if(!(value2 instanceof List)) {
|
||||
throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - found type %s for value, expecting an array of labels.",toExpression(constructingFactory), value2.getClass().getSimpleName()));
|
||||
} else {
|
||||
Matrix matrix = (Matrix)value1;
|
||||
List<String> rowlabels = (List<String>)value2;
|
||||
matrix.setRowLabels(rowlabels);
|
||||
return matrix;
|
||||
}
|
||||
}
|
||||
}
|
|
@ -38,6 +38,7 @@ public class TermVectorsEvaluator extends RecursiveObjectEvaluator implements Ma
|
|||
private int minTermLength = 3;
|
||||
private double minDocFreq = .05; // 5% of the docs min
|
||||
private double maxDocFreq = .5; // 50% of the docs max
|
||||
private String[] excludes;
|
||||
|
||||
public TermVectorsEvaluator(StreamExpression expression, StreamFactory factory) throws IOException {
|
||||
super(expression, factory);
|
||||
|
@ -57,6 +58,8 @@ public class TermVectorsEvaluator extends RecursiveObjectEvaluator implements Ma
|
|||
if (maxDocFreq < 0 || maxDocFreq > 1) {
|
||||
throw new IOException("Doc frequency percentage must be between 0 and 1");
|
||||
}
|
||||
} else if(namedParam.getName().equals("exclude")) {
|
||||
this.excludes = namedParam.getParameter().toString().split(",");
|
||||
} else {
|
||||
throw new IOException("Unexpected named parameter:" + namedParam.getName());
|
||||
}
|
||||
|
@ -100,6 +103,7 @@ public class TermVectorsEvaluator extends RecursiveObjectEvaluator implements Ma
|
|||
String id = tuple.getString("id");
|
||||
rowLabels.add(id);
|
||||
|
||||
OUTER:
|
||||
for (String term : terms) {
|
||||
|
||||
if (term.length() < minTermLength) {
|
||||
|
@ -107,6 +111,14 @@ public class TermVectorsEvaluator extends RecursiveObjectEvaluator implements Ma
|
|||
continue;
|
||||
}
|
||||
|
||||
if(excludes != null) {
|
||||
for (String exclude : excludes) {
|
||||
if (term.indexOf(exclude) > -1) {
|
||||
continue OUTER;
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (!docTerms.contains(term)) {
|
||||
docTerms.add(term);
|
||||
if (docFreqs.containsKey(term)) {
|
||||
|
@ -134,7 +146,6 @@ public class TermVectorsEvaluator extends RecursiveObjectEvaluator implements Ma
|
|||
it.remove();
|
||||
}
|
||||
}
|
||||
|
||||
int totalTerms = docFreqs.size();
|
||||
Set<String> keys = docFreqs.keySet();
|
||||
features.addAll(keys);
|
||||
|
|
|
@ -0,0 +1,112 @@
|
|||
/*
|
||||
* Licensed to the Apache Software Foundation (ASF) under one or more
|
||||
* contributor license agreements. See the NOTICE file distributed with
|
||||
* this work for additional information regarding copyright ownership.
|
||||
* The ASF licenses this file to You under the Apache License, Version 2.0
|
||||
* (the "License"); you may not use this file except in compliance with
|
||||
* the License. You may obtain a copy of the License at
|
||||
*
|
||||
* http://www.apache.org/licenses/LICENSE-2.0
|
||||
*
|
||||
* Unless required by applicable law or agreed to in writing, software
|
||||
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||
* See the License for the specific language governing permissions and
|
||||
* limitations under the License.
|
||||
*/
|
||||
package org.apache.solr.client.solrj.io.eval;
|
||||
|
||||
import java.io.IOException;
|
||||
|
||||
import java.util.Locale;
|
||||
|
||||
import org.apache.solr.client.solrj.io.stream.expr.StreamExpression;
|
||||
import org.apache.solr.client.solrj.io.stream.expr.StreamFactory;
|
||||
import java.util.List;
|
||||
import java.util.ArrayList;
|
||||
import java.util.TreeSet;
|
||||
|
||||
public class TopFeaturesEvaluator extends RecursiveObjectEvaluator implements TwoValueWorker {
|
||||
protected static final long serialVersionUID = 1L;
|
||||
|
||||
public TopFeaturesEvaluator(StreamExpression expression, StreamFactory factory) throws IOException{
|
||||
super(expression, factory);
|
||||
|
||||
if(2 != containedEvaluators.size()){
|
||||
throw new IOException(String.format(Locale.ROOT,"Invalid expression %s - expecting exactly 2 values but found %d",expression,containedEvaluators.size()));
|
||||
}
|
||||
}
|
||||
|
||||
@Override
|
||||
public Object doWork(Object value1, Object value2) throws IOException {
|
||||
|
||||
int k = ((Number)value2).intValue();
|
||||
|
||||
if(value1 instanceof Matrix) {
|
||||
|
||||
Matrix matrix = (Matrix) value1;
|
||||
List<String> features = matrix.getColumnLabels();
|
||||
|
||||
if(features == null) {
|
||||
throw new IOException("Matrix column labels cannot be null for topFeatures function.");
|
||||
}
|
||||
|
||||
double[][] data = matrix.getData();
|
||||
List<List<String>> topFeatures = new ArrayList();
|
||||
|
||||
for(int i=0; i<data.length; i++) {
|
||||
double[] row = data[i];
|
||||
List<String> featuresRow = new ArrayList();
|
||||
List<Integer> indexes = getMaxIndexes(row, k);
|
||||
for(int index : indexes) {
|
||||
featuresRow.add(features.get(index));
|
||||
}
|
||||
topFeatures.add(featuresRow);
|
||||
}
|
||||
|
||||
return topFeatures;
|
||||
} else {
|
||||
throw new IOException("The topFeatures function expects a matrix as the first parameter");
|
||||
}
|
||||
}
|
||||
|
||||
private List<Integer> getMaxIndexes(double[] values, int k) {
|
||||
TreeSet<Pair> set = new TreeSet();
|
||||
for(int i=0; i<values.length; i++) {
|
||||
set.add(new Pair(i, values[i]));
|
||||
if(set.size() > k) {
|
||||
set.pollFirst();
|
||||
}
|
||||
}
|
||||
|
||||
List<Integer> top = new ArrayList(k);
|
||||
while(set.size() > 0) {
|
||||
top.add(set.pollLast().getIndex());
|
||||
}
|
||||
|
||||
return top;
|
||||
}
|
||||
|
||||
public static class Pair implements Comparable<Pair> {
|
||||
|
||||
private int index;
|
||||
private Double value;
|
||||
|
||||
public Pair(int index, Number value) {
|
||||
this.index = index;
|
||||
this.value = value.doubleValue();
|
||||
}
|
||||
|
||||
public int compareTo(Pair pair) {
|
||||
return value.compareTo(pair.value);
|
||||
}
|
||||
|
||||
public int getIndex() {
|
||||
return this.index;
|
||||
}
|
||||
|
||||
public Number getValue() {
|
||||
return value;
|
||||
}
|
||||
}
|
||||
}
|
|
@ -53,7 +53,10 @@ public class UnitEvaluator extends RecursiveObjectEvaluator implements OneValueW
|
|||
unitData[i] = unitRow;
|
||||
}
|
||||
|
||||
return new Matrix(unitData);
|
||||
Matrix m = new Matrix(unitData);
|
||||
m.setRowLabels(matrix.getRowLabels());
|
||||
m.setColumnLabels(matrix.getRowLabels());
|
||||
return m;
|
||||
} else if(value instanceof List) {
|
||||
List<Number> values = (List<Number>)value;
|
||||
double[] doubles = new double[values.size()];
|
||||
|
|
|
@ -22,6 +22,8 @@ import java.util.LinkedHashMap;
|
|||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.Set;
|
||||
import java.util.HashSet;
|
||||
|
||||
|
||||
import org.apache.solr.client.solrj.io.Tuple;
|
||||
import org.apache.solr.client.solrj.io.comp.StreamComparator;
|
||||
|
@ -50,14 +52,25 @@ public class LetStream extends TupleStream implements Expressible {
|
|||
|
||||
List<StreamExpressionNamedParameter> namedParams = factory.getNamedOperands(expression);
|
||||
//Get all the named params
|
||||
boolean echo = false;
|
||||
Set<String> echo = null;
|
||||
boolean echoAll = false;
|
||||
String currentName = null;
|
||||
for(StreamExpressionParameter np : namedParams) {
|
||||
String name = ((StreamExpressionNamedParameter)np).getName();
|
||||
currentName = name;
|
||||
|
||||
if(name.equals("echo")) {
|
||||
echo = true;
|
||||
echo = new HashSet();
|
||||
String echoString = ((StreamExpressionNamedParameter) np).getParameter().toString().trim();
|
||||
if(echoString.equalsIgnoreCase("true")) {
|
||||
echoAll = true;
|
||||
} else {
|
||||
String[] echoVars = echoString.split(",");
|
||||
for (String echoVar : echoVars) {
|
||||
echo.add(echoVar.trim());
|
||||
}
|
||||
}
|
||||
|
||||
continue;
|
||||
}
|
||||
|
||||
|
@ -75,14 +88,21 @@ public class LetStream extends TupleStream implements Expressible {
|
|||
stream = factory.constructStream(streamExpressions.get(0));
|
||||
} else {
|
||||
StreamExpression tupleExpression = new StreamExpression("tuple");
|
||||
if(!echo) {
|
||||
if(!echoAll && echo == null) {
|
||||
tupleExpression.addParameter(new StreamExpressionNamedParameter(currentName, currentName));
|
||||
} else {
|
||||
Set<String> names = letParams.keySet();
|
||||
for(String name : names) {
|
||||
tupleExpression.addParameter(new StreamExpressionNamedParameter(name, name));
|
||||
if(echoAll) {
|
||||
tupleExpression.addParameter(new StreamExpressionNamedParameter(name, name));
|
||||
} else {
|
||||
if(echo.contains(name)) {
|
||||
tupleExpression.addParameter(new StreamExpressionNamedParameter(name, name));
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
stream = factory.constructStream(tupleExpression);
|
||||
}
|
||||
}
|
||||
|
|
|
@ -6175,7 +6175,14 @@ public class StreamExpressionTest extends SolrCloudTestCase {
|
|||
|
||||
@Test
|
||||
public void testMatrix() throws Exception {
|
||||
String cexpr = "matrix(array(1, 2, 3), rev(array(4,5,6)))";
|
||||
String cexpr = "let(echo=true," +
|
||||
" a=setColumnLabels(matrix(array(1, 2, 3), " +
|
||||
" rev(array(4,5,6)))," +
|
||||
" array(col1, col2, col3))," +
|
||||
" b=rowAt(a, 1)," +
|
||||
" c=colAt(a, 2)," +
|
||||
" d=getColumnLabels(a)," +
|
||||
" e=topFeatures(a, 1))";
|
||||
ModifiableSolrParams paramsLoc = new ModifiableSolrParams();
|
||||
paramsLoc.set("expr", cexpr);
|
||||
paramsLoc.set("qt", "/stream");
|
||||
|
@ -6185,7 +6192,7 @@ public class StreamExpressionTest extends SolrCloudTestCase {
|
|||
solrStream.setStreamContext(context);
|
||||
List<Tuple> tuples = getTuples(solrStream);
|
||||
assertTrue(tuples.size() == 1);
|
||||
List<List<Number>> out = (List<List<Number>>)tuples.get(0).get("return-value");
|
||||
List<List<Number>> out = (List<List<Number>>)tuples.get(0).get("a");
|
||||
|
||||
List<Number> array1 = out.get(0);
|
||||
assertEquals(array1.size(), 3);
|
||||
|
@ -6198,6 +6205,31 @@ public class StreamExpressionTest extends SolrCloudTestCase {
|
|||
assertEquals(array2.get(0).doubleValue(), 6.0, 0.0);
|
||||
assertEquals(array2.get(1).doubleValue(), 5.0, 0.0);
|
||||
assertEquals(array2.get(2).doubleValue(), 4.0, 0.0);
|
||||
|
||||
List<Number> row = (List<Number>)tuples.get(0).get("b");
|
||||
|
||||
assertEquals(row.size(), 3);
|
||||
assertEquals(array2.get(0).doubleValue(), 6.0, 0.0);
|
||||
assertEquals(array2.get(1).doubleValue(), 5.0, 0.0);
|
||||
assertEquals(array2.get(2).doubleValue(), 4.0, 0.0);
|
||||
|
||||
List<Number> col = (List<Number>)tuples.get(0).get("c");
|
||||
assertEquals(col.size(), 2);
|
||||
assertEquals(col.get(0).doubleValue(), 3.0, 0.0);
|
||||
assertEquals(col.get(1).doubleValue(), 4.0, 0.0);
|
||||
|
||||
List<String> colLabels = (List<String>)tuples.get(0).get("d");
|
||||
assertEquals(colLabels.size(), 3);
|
||||
assertEquals(colLabels.get(0), "col1");
|
||||
assertEquals(colLabels.get(1), "col2");
|
||||
assertEquals(colLabels.get(2), "col3");
|
||||
|
||||
List<List<String>> features = (List<List<String>>)tuples.get(0).get("e");
|
||||
assertEquals(features.size(), 2);
|
||||
assertEquals(features.get(0).size(), 1);
|
||||
assertEquals(features.get(1).size(), 1);
|
||||
assertEquals(features.get(0).get(0), "col3");
|
||||
assertEquals(features.get(1).get(0), "col1");
|
||||
}
|
||||
|
||||
|
||||
|
@ -6784,6 +6816,78 @@ public class StreamExpressionTest extends SolrCloudTestCase {
|
|||
assertEquals(docFreqs.get("world").intValue(), 1);
|
||||
|
||||
|
||||
//Test exclude. This should drop off the term jim
|
||||
|
||||
cexpr = "let(echo=true," +
|
||||
" a=select(list(tuple(id=\"1\", text=\"hello world\"), " +
|
||||
" tuple(id=\"2\", text=\"hello steve\"), " +
|
||||
" tuple(id=\"3\", text=\"hello jim jim\"), " +
|
||||
" tuple(id=\"4\", text=\"hello jack\")), id, analyze(text, test_t) as terms)," +
|
||||
" b=termVectors(a, exclude=jim, minDocFreq=0, maxDocFreq=1)," +
|
||||
" c=getRowLabels(b)," +
|
||||
" d=getColumnLabels(b)," +
|
||||
" e=getAttribute(b, docFreqs))";
|
||||
|
||||
paramsLoc = new ModifiableSolrParams();
|
||||
paramsLoc.set("expr", cexpr);
|
||||
paramsLoc.set("qt", "/stream");
|
||||
solrStream = new SolrStream(url, paramsLoc);
|
||||
context = new StreamContext();
|
||||
solrStream.setStreamContext(context);
|
||||
tuples = getTuples(solrStream);
|
||||
assertTrue(tuples.size() == 1);
|
||||
termVectors = (List<List<Number>>)tuples.get(0).get("b");
|
||||
assertEquals(termVectors.size(), 4);
|
||||
termVector = termVectors.get(0);
|
||||
assertEquals(termVector.size(), 4);
|
||||
assertEquals(termVector.get(0).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(termVector.get(1).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(termVector.get(2).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(termVector.get(3).doubleValue(), 1.916290731874155, 0.0);
|
||||
|
||||
termVector = termVectors.get(1);
|
||||
assertEquals(termVector.size(), 4);
|
||||
assertEquals(termVector.get(0).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(termVector.get(1).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(termVector.get(2).doubleValue(), 1.916290731874155, 0.0);
|
||||
assertEquals(termVector.get(3).doubleValue(), 0.0, 0.0);
|
||||
|
||||
termVector = termVectors.get(2);
|
||||
assertEquals(termVector.size(), 4);
|
||||
assertEquals(termVector.get(0).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(termVector.get(1).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(termVector.get(2).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(termVector.get(3).doubleValue(), 0.0, 0.0);
|
||||
|
||||
termVector = termVectors.get(3);
|
||||
assertEquals(termVector.size(), 4);
|
||||
assertEquals(termVector.get(0).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(termVector.get(1).doubleValue(), 1.916290731874155, 0.0);
|
||||
assertEquals(termVector.get(2).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(termVector.get(3).doubleValue(), 0.0, 0.0);
|
||||
|
||||
rowLabels = (List<String>)tuples.get(0).get("c");
|
||||
assertEquals(rowLabels.size(), 4);
|
||||
assertEquals(rowLabels.get(0), "1");
|
||||
assertEquals(rowLabels.get(1), "2");
|
||||
assertEquals(rowLabels.get(2), "3");
|
||||
assertEquals(rowLabels.get(3), "4");
|
||||
|
||||
columnLabels = (List<String>)tuples.get(0).get("d");
|
||||
assertEquals(columnLabels.size(), 4);
|
||||
assertEquals(columnLabels.get(0), "hello");
|
||||
assertEquals(columnLabels.get(1), "jack");
|
||||
assertEquals(columnLabels.get(2), "steve");
|
||||
assertEquals(columnLabels.get(3), "world");
|
||||
|
||||
docFreqs = (Map<String, Number>)tuples.get(0).get("e");
|
||||
|
||||
assertEquals(docFreqs.size(), 4);
|
||||
assertEquals(docFreqs.get("hello").intValue(), 4);
|
||||
assertEquals(docFreqs.get("jack").intValue(), 1);
|
||||
assertEquals(docFreqs.get("steve").intValue(), 1);
|
||||
assertEquals(docFreqs.get("world").intValue(), 1);
|
||||
|
||||
//Test minDocFreq attribute at .5. This should eliminate all but the term hello
|
||||
|
||||
cexpr = "let(echo=true," +
|
||||
|
@ -6884,6 +6988,84 @@ public class StreamExpressionTest extends SolrCloudTestCase {
|
|||
assertTrue(out.get(5).intValue() == 6);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testKmeans() throws Exception {
|
||||
String cexpr = "let(echo=true," +
|
||||
" a=array(1,1,1,0,0,0)," +
|
||||
" b=array(1,1,1,0,0,0)," +
|
||||
" c=array(0,0,0,1,1,1)," +
|
||||
" d=array(0,0,0,1,1,1)," +
|
||||
" e=setRowLabels(matrix(a,b,c,d), " +
|
||||
" array(doc1, doc2, doc3, doc4))," +
|
||||
" f=kmeans(e, 2)," +
|
||||
" g=getCluster(f, 0)," +
|
||||
" h=getCluster(f, 1)," +
|
||||
" i=getCentroids(f)," +
|
||||
" j=getRowLabels(g)," +
|
||||
" k=getRowLabels(h))";
|
||||
ModifiableSolrParams paramsLoc = new ModifiableSolrParams();
|
||||
paramsLoc.set("expr", cexpr);
|
||||
paramsLoc.set("qt", "/stream");
|
||||
String url = cluster.getJettySolrRunners().get(0).getBaseUrl().toString()+"/"+COLLECTIONORALIAS;
|
||||
TupleStream solrStream = new SolrStream(url, paramsLoc);
|
||||
StreamContext context = new StreamContext();
|
||||
solrStream.setStreamContext(context);
|
||||
List<Tuple> tuples = getTuples(solrStream);
|
||||
assertTrue(tuples.size() == 1);
|
||||
List<List<Number>> cluster1 = (List<List<Number>>)tuples.get(0).get("g");
|
||||
List<List<Number>> cluster2 = (List<List<Number>>)tuples.get(0).get("h");
|
||||
List<List<Number>> centroids = (List<List<Number>>)tuples.get(0).get("i");
|
||||
List<String> labels1 = (List<String>)tuples.get(0).get("j");
|
||||
List<String> labels2 = (List<String>)tuples.get(0).get("k");
|
||||
|
||||
assertEquals(cluster1.size(), 2);
|
||||
assertEquals(cluster2.size(), 2);
|
||||
assertEquals(centroids.size(), 2);
|
||||
|
||||
//Assert that the docs are not in both clusters
|
||||
assertTrue(!(labels1.contains("doc1") && labels2.contains("doc1")));
|
||||
assertTrue(!(labels1.contains("doc2") && labels2.contains("doc2")));
|
||||
assertTrue(!(labels1.contains("doc3") && labels2.contains("doc3")));
|
||||
assertTrue(!(labels1.contains("doc4") && labels2.contains("doc4")));
|
||||
|
||||
//Assert that (doc1 and doc2) or (doc3 and doc4) are in labels1
|
||||
assertTrue((labels1.contains("doc1") && labels1.contains("doc2")) ||
|
||||
((labels1.contains("doc3") && labels1.contains("doc4"))));
|
||||
|
||||
//Assert that (doc1 and doc2) or (doc3 and doc4) are in labels2
|
||||
assertTrue((labels2.contains("doc1") && labels2.contains("doc2")) ||
|
||||
((labels2.contains("doc3") && labels2.contains("doc4"))));
|
||||
|
||||
if(labels1.contains("doc1")) {
|
||||
assertEquals(centroids.get(0).get(0).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(1).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(2).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(3).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(4).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(5).doubleValue(), 0.0, 0.0);
|
||||
|
||||
assertEquals(centroids.get(1).get(0).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(1).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(2).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(3).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(4).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(5).doubleValue(), 1.0, 0.0);
|
||||
} else {
|
||||
assertEquals(centroids.get(0).get(0).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(1).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(2).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(3).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(4).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(0).get(5).doubleValue(), 1.0, 0.0);
|
||||
|
||||
assertEquals(centroids.get(1).get(0).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(1).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(2).doubleValue(), 1.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(3).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(4).doubleValue(), 0.0, 0.0);
|
||||
assertEquals(centroids.get(1).get(5).doubleValue(), 0.0, 0.0);
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testEBEMultiply() throws Exception {
|
||||
|
|
Loading…
Reference in New Issue