Merge remote-tracking branch 'origin/master' into gradle-master

This commit is contained in:
Dawid Weiss 2019-12-07 10:53:34 +01:00
commit c3bb81f032
24 changed files with 105 additions and 306 deletions

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@ -22,8 +22,6 @@ com.fasterxml.jackson.core.version = 2.9.9
/com.fasterxml.jackson.core/jackson-core = ${com.fasterxml.jackson.core.version}
/com.fasterxml.jackson.core/jackson-databind = 2.9.9.3
/com.fasterxml.jackson.dataformat/jackson-dataformat-smile = ${com.fasterxml.jackson.core.version}
/com.fasterxml.staxmate/staxmate = 2.3.1
/com.fasterxml/aalto-xml = 1.2.2
/com.github.ben-manes.caffeine/caffeine = 2.8.0
/com.github.virtuald/curvesapi = 1.04
@ -259,7 +257,9 @@ org.codehaus.janino.version = 3.0.9
/org.codehaus.janino/commons-compiler = ${org.codehaus.janino.version}
/org.codehaus.janino/janino = ${org.codehaus.janino.version}
/org.codehaus.woodstox/stax2-api = 4.2
/org.codehaus.woodstox/stax2-api = 3.1.4
/org.codehaus.woodstox/woodstox-core-asl = 4.4.1
org.eclipse.jetty.version = 9.4.19.v20190610
/org.eclipse.jetty.http2/http2-client = ${org.eclipse.jetty.version}
/org.eclipse.jetty.http2/http2-common = ${org.eclipse.jetty.version}

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@ -163,8 +163,6 @@ Improvements
* SOLR-11706: Add support for aggregation on multivalued fields in JSON facets. min, max, avg, sum, sumsq, stddev,
variance, percentile aggregations now have support for multivalued fields. (hossman, Munendra S N)
* SOLR-13990: Switch out woodstox-core-asl with aalto-xml and upgrade woodstox stax-2 API (Anshum Gupta, Mark Miller)
Optimizations
---------------------
(No changes)
@ -210,6 +208,9 @@ Bug Fixes
* SOLR-13954: Embedded ZooKeeper in Solr now does not try to load JettyAdminServer (janhoy)
* SOLR-13087: Use EUID instead of whoami to check for root in the bin/solr script (Martijn Koster via Jason Gerlowski)
Other Changes
---------------------

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@ -1141,7 +1141,7 @@ if [[ "$SCRIPT_CMD" == "create" || "$SCRIPT_CMD" == "create_core" || "$SCRIPT_CM
echo " To turn off: bin/solr config -c $CREATE_NAME -p $CREATE_PORT -action set-user-property -property update.autoCreateFields -value false"
fi
if [[ "$(whoami)" == "root" ]] && [[ "$FORCE" == "false" ]] ; then
if [[ $EUID -eq 0 ]] && [[ "$FORCE" == "false" ]] ; then
echo "WARNING: Creating cores as the root user can cause Solr to fail and is not advisable. Exiting."
echo " If you started Solr as root (not advisable either), force core creation by adding argument -force"
exit 1
@ -1877,7 +1877,7 @@ if [ -z "$STOP_PORT" ]; then
fi
if [ "$SCRIPT_CMD" == "start" ] || [ "$SCRIPT_CMD" == "restart" ] ; then
if [[ "$(whoami)" == "root" ]] && [[ "$FORCE" == "false" ]] ; then
if [[ $EUID -eq 0 ]] && [[ "$FORCE" == "false" ]] ; then
echo "WARNING: Starting Solr as the root user is a security risk and not considered best practice. Exiting."
echo " Please consult the Reference Guide. To override this check, start with argument '-force'"
exit 1

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@ -22,16 +22,18 @@
package org.apache.solr.handler.tagger;
import javax.xml.stream.XMLInputFactory;
import javax.xml.stream.XMLResolver;
import javax.xml.stream.XMLStreamException;
import javax.xml.stream.events.XMLEvent;
import org.apache.solr.common.EmptyEntityResolver;
import java.io.InputStream;
import java.io.StringReader;
import com.ctc.wstx.stax.WstxInputFactory;
import org.apache.commons.io.input.ClosedInputStream;
import org.codehaus.stax2.LocationInfo;
import org.codehaus.stax2.XMLInputFactory2;
import org.codehaus.stax2.XMLStreamReader2;
import java.io.StringReader;
/**
* Corrects offsets to adjust for XML formatted data. The goal is such that the caller should be
* able to insert a start XML tag at the start offset and a corresponding end XML tag at the end
@ -43,13 +45,21 @@ import java.io.StringReader;
*/
public class XmlOffsetCorrector extends OffsetCorrector {
//TODO use StAX without hard requirement on woodstox. xmlStreamReader.getLocation().getCharacterOffset()
//TODO use StAX without hard requirement on woodstox. xmlStreamReader.getLocation().getCharacterOffset()
private static final XMLInputFactory XML_INPUT_FACTORY;
private static final XMLInputFactory2 XML_INPUT_FACTORY;
static {
// note: similar code in Solr's EmptyEntityResolver
XML_INPUT_FACTORY = new WstxInputFactory();
XML_INPUT_FACTORY.setXMLResolver(new XMLResolver() {
@Override
public InputStream resolveEntity(String publicId, String systemId, String baseURI, String namespace) {
return ClosedInputStream.CLOSED_INPUT_STREAM;
}
});
// TODO disable DTD?
XML_INPUT_FACTORY = XMLInputFactory2.newFactory();
XML_INPUT_FACTORY.setXMLResolver(EmptyEntityResolver.STAX_INSTANCE);
// XML_INPUT_FACTORY.setProperty(XMLInputFactory.IS_VALIDATING, Boolean.FALSE)
XML_INPUT_FACTORY.configureForSpeed();
}
/**

View File

@ -34,20 +34,32 @@ public class AggUtil {
/**
* Computes and returns uncorrected standard deviation for given values
*/
public static double stdDev(double sumSq, double sum, long count) {
// todo: switch to corrected stddev SOLR-11725
public static double uncorrectedStdDev(double sumSq, double sum, long count) {
// todo: should we return NAN when count==0?
double val = count == 0 ? 0 : Math.sqrt((sumSq / count) - Math.pow(sum / count, 2));
return val;
return count == 0 ? 0 : Math.sqrt((sumSq / count) - Math.pow(sum / count, 2));
}
/**
* Computes and returns corrected standard deviation for given values
*/
public static double stdDev(double sumSq, double sum, long count) {
// todo: should we return NAN when count==0?
return count == 0 ? 0 : Math.sqrt(((count * sumSq) - (sum * sum)) / (count * (count - 1.0D)));
}
/**
* Computes and returns uncorrected variance for given values
*/
public static double variance(double sumSq, double sum, long count) {
// todo: switch to corrected variance SOLR-11725
public static double uncorrectedVariance(double sumSq, double sum, long count) {
// todo: should we return NAN when count==0?
double val = count == 0 ? 0 : (sumSq / count) - Math.pow(sum / count, 2);
return val;
return count == 0 ? 0 : (sumSq / count) - Math.pow(sum / count, 2);
}
/**
* Computes and returns corrected variance for given values
*/
public static double variance(double sumSq, double sum, long count) {
// todo: should we return NAN when count==0?
return count == 0 ? 0 : ((count * sumSq) - (sum * sum)) / (count * (count - 1.0D));
}
}

View File

@ -29,7 +29,6 @@ import org.apache.lucene.index.NumericDocValues;
import org.apache.lucene.index.SortedDocValues;
import org.apache.lucene.index.SortedNumericDocValues;
import org.apache.lucene.index.SortedSetDocValues;
import org.apache.lucene.search.DocIdSetIterator;
import org.apache.lucene.util.BytesRef;
import org.apache.lucene.util.NumericUtils;
import org.apache.solr.schema.SchemaField;
@ -47,21 +46,18 @@ public abstract class DocValuesAcc extends SlotAcc {
@Override
public void collect(int doc, int slot, IntFunction<SlotContext> slotContext) throws IOException {
int valuesDocID = docIdSetIterator().docID();
if (valuesDocID < doc) {
valuesDocID = docIdSetIterator().advance(doc);
if (advanceExact(doc)) {
collectValues(doc, slot);
}
if (valuesDocID > doc) {
// missing
return;
}
assert valuesDocID == doc;
collectValues(doc, slot);
}
protected abstract void collectValues(int doc, int slot) throws IOException;
protected abstract DocIdSetIterator docIdSetIterator();
/**
* Wrapper to {@code org.apache.lucene.index.DocValuesIterator#advanceExact(int)}
* returns whether or not given {@code doc} has value
*/
protected abstract boolean advanceExact(int doc) throws IOException;
}
/**
@ -81,8 +77,8 @@ abstract class NumericDVAcc extends DocValuesAcc {
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
}
@ -103,8 +99,8 @@ abstract class SortedNumericDVAcc extends DocValuesAcc {
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
}
@ -272,8 +268,8 @@ abstract class SortedDVAcc extends DocValuesAcc {
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
}
@ -294,8 +290,8 @@ abstract class SortedSetDVAcc extends DocValuesAcc {
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
}

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@ -190,11 +190,15 @@ public class HLLAgg extends StrAggValueSource {
values = DocValues.getNumeric(readerContext.reader(), sf.getName());
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
}
@Override
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
@Override
protected void collectValues(int doc, HLL hll) throws IOException {
long val = values.longValue();
@ -216,11 +220,15 @@ public class HLLAgg extends StrAggValueSource {
values = DocValues.getSortedNumeric(readerContext.reader(), sf.getName());
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
}
@Override
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
@Override
protected void collectValues(int doc, HLL hll) throws IOException {
for (int i = 0, count = values.docValueCount(); i < count; i++) {

View File

@ -27,7 +27,6 @@ import org.apache.lucene.index.OrdinalMap;
import org.apache.lucene.index.SortedDocValues;
import org.apache.lucene.index.SortedSetDocValues;
import org.apache.lucene.queries.function.ValueSource;
import org.apache.lucene.search.DocIdSetIterator;
import org.apache.lucene.util.BytesRef;
import org.apache.lucene.util.FixedBitSet;
import org.apache.lucene.util.LongValues;
@ -522,8 +521,8 @@ public class MinMaxAgg extends SimpleAggValueSource {
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return subDv;
protected boolean advanceExact(int doc) throws IOException {
return subDv.advanceExact(doc);
}
}
}

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@ -31,7 +31,6 @@ import org.apache.lucene.index.LeafReaderContext;
import org.apache.lucene.index.SortedNumericDocValues;
import org.apache.lucene.index.SortedSetDocValues;
import org.apache.lucene.queries.function.ValueSource;
import org.apache.lucene.search.DocIdSetIterator;
import org.apache.lucene.util.BytesRef;
import org.apache.lucene.util.NumericUtils;
import org.apache.solr.common.SolrException;
@ -313,8 +312,8 @@ public class PercentileAgg extends SimpleAggValueSource {
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
/**
@ -366,8 +365,8 @@ public class PercentileAgg extends SimpleAggValueSource {
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
}

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@ -484,7 +484,7 @@ class VarianceSlotAcc extends DoubleFuncSlotAcc {
}
private double variance(int slot) {
return AggUtil.variance(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
return AggUtil.uncorrectedVariance(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
}
@Override
@ -541,7 +541,7 @@ class StddevSlotAcc extends DoubleFuncSlotAcc {
}
private double stdDev(int slot) {
return AggUtil.stdDev(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
return AggUtil.uncorrectedStdDev(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
}
@Override

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@ -86,7 +86,7 @@ public class StddevAgg extends SimpleAggValueSource {
@Override
protected double getDouble() {
return AggUtil.stdDev(sumSq, sum, count);
return AggUtil.uncorrectedStdDev(sumSq, sum, count);
}
}
@ -98,7 +98,7 @@ public class StddevAgg extends SimpleAggValueSource {
@Override
protected double computeVal(int slot) {
return AggUtil.stdDev(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
return AggUtil.uncorrectedStdDev(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
}
}
@ -110,7 +110,7 @@ public class StddevAgg extends SimpleAggValueSource {
@Override
protected double computeVal(int slot) {
return AggUtil.stdDev(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
return AggUtil.uncorrectedStdDev(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
}
}
@ -122,7 +122,7 @@ public class StddevAgg extends SimpleAggValueSource {
@Override
protected double computeVal(int slot) {
return AggUtil.stdDev(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
return AggUtil.uncorrectedStdDev(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
}
}
}

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@ -205,11 +205,15 @@ public class UniqueAgg extends StrAggValueSource {
super(fcontext, field, numSlots);
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
}
@Override
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
@Override
public void setNextReader(LeafReaderContext readerContext) throws IOException {
values = DocValues.getNumeric(readerContext.reader(), sf.getName());
@ -228,11 +232,15 @@ public class UniqueAgg extends StrAggValueSource {
super(fcontext, field, numSlots);
}
@Override
protected DocIdSetIterator docIdSetIterator() {
return values;
}
@Override
protected boolean advanceExact(int doc) throws IOException {
return values.advanceExact(doc);
}
@Override
public void setNextReader(LeafReaderContext readerContext) throws IOException {
values = DocValues.getSortedNumeric(readerContext.reader(), sf.getName());

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@ -85,7 +85,7 @@ public class VarianceAgg extends SimpleAggValueSource {
@Override
protected double getDouble() {
return AggUtil.variance(sumSq, sum, count);
return AggUtil.uncorrectedVariance(sumSq, sum, count);
}
}
@ -97,7 +97,7 @@ public class VarianceAgg extends SimpleAggValueSource {
@Override
protected double computeVal(int slot) {
return AggUtil.variance(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
return AggUtil.uncorrectedVariance(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
}
}
@ -109,7 +109,7 @@ public class VarianceAgg extends SimpleAggValueSource {
@Override
protected double computeVal(int slot) {
return AggUtil.variance(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
return AggUtil.uncorrectedVariance(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
}
}
@ -121,7 +121,7 @@ public class VarianceAgg extends SimpleAggValueSource {
@Override
protected double computeVal(int slot) {
return AggUtil.variance(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
return AggUtil.uncorrectedVariance(result[slot], sum[slot], counts[slot]); // calc once and cache in result?
}
}
}

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@ -21,6 +21,7 @@ import static org.hamcrest.CoreMatchers.hasItem;
import static org.hamcrest.CoreMatchers.is;
import static org.hamcrest.CoreMatchers.not;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.Properties;
import org.apache.solr.client.solrj.impl.BaseHttpSolrClient;
@ -78,7 +79,8 @@ public class CreateCollectionCleanupTest extends SolrCloudTestCase {
Properties properties = new Properties();
Path tmpDir = createTempDir();
tmpDir.toFile().setWritable(false);
tmpDir = tmpDir.resolve("foo");
Files.createFile(tmpDir);
properties.put(CoreAdminParams.DATA_DIR, tmpDir.toString());
create.setProperties(properties);
expectThrows(BaseHttpSolrClient.RemoteSolrException.class, () -> {
@ -102,7 +104,8 @@ public class CreateCollectionCleanupTest extends SolrCloudTestCase {
Properties properties = new Properties();
Path tmpDir = createTempDir();
tmpDir.toFile().setWritable(false);
tmpDir = tmpDir.resolve("foo");
Files.createFile(tmpDir);
properties.put(CoreAdminParams.DATA_DIR, tmpDir.toString());
create.setProperties(properties);
create.setAsyncId("testAsyncCreateCollectionCleanup");

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@ -1 +0,0 @@
c99d6ab984ef5c61114733becc06cb584e28a0c7

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@ -1,201 +0,0 @@
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@ -0,0 +1 @@
ac19014b1e6a7c08aad07fe114af792676b685b7

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@ -1 +0,0 @@
13c2b30926bca0429c704c4b4ca0b5d0432b69cd

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@ -1 +0,0 @@
d0aabe584bed77aff0fc9bb8846808e7b31a5352

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@ -1,33 +0,0 @@
This copy of StaxMate processing library is licensed under
BSD License ("new BSD").
See http://www.opensource.org/licenses/bsd-license.php
for details.
Full license text is as follows:
--------------------------------------------------------------------------
* Copyright (c) 2007, Tatu Saloranta
* All rights reserved.
*
* Redistribution and use in source and binary forms, with or without
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* * Redistributions of source code must retain the above copyright
* notice, this list of conditions and the following disclaimer.
* * Redistributions in binary form must reproduce the above copyright
* notice, this list of conditions and the following disclaimer in the
* documentation and/or other materials provided with the distribution.
* * Neither the name of the <organization> nor the
* names of its contributors may be used to endorse or promote products
* derived from this software without specific prior written permission.
*
* THIS SOFTWARE IS PROVIDED BY <copyright holder> ``AS IS'' AND ANY
* EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
* WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
* DISCLAIMED. IN NO EVENT SHALL <copyright holder> BE LIABLE FOR ANY
* DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
* (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
* LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
* ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
* (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
* SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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<dependency org="org.apache.httpcomponents" name="httpcore" rev="${/org.apache.httpcomponents/httpcore}" conf="compile"/>
<dependency org="commons-io" name="commons-io" rev="${/commons-io/commons-io}" conf="compile"/>
<dependency org="org.apache.commons" name="commons-math3" rev="${/org.apache.commons/commons-math3}" conf="compile"/>
<dependency org="com.fasterxml" name="aalto-xml" rev="${/com.fasterxml/aalto-xml}" conf="compile"/>
<dependency org="com.fasterxml.staxmate" name="staxmate" rev="${/com.fasterxml.staxmate/staxmate}" conf="compile"/>
<dependency org="org.codehaus.woodstox" name="woodstox-core-asl" rev="${/org.codehaus.woodstox/woodstox-core-asl}" conf="compile"/>
<dependency org="org.codehaus.woodstox" name="stax2-api" rev="${/org.codehaus.woodstox/stax2-api}" conf="compile"/>
<dependency org="org.slf4j" name="slf4j-api" rev="${/org.slf4j/slf4j-api}" conf="compile"/>
<dependency org="org.slf4j" name="jcl-over-slf4j" rev="${/org.slf4j/jcl-over-slf4j}" conf="compile"/>