`npm dedupe` is a command that attempts to simplify the structure of the local package tree by moving dependencies higher up. This allows for more effective package sharing, less transfer, and smaller `node_modules` folders.
This change configures npm to `prefer-dedupe` by default so that these benefits persist and the command is not required to be run regularly.
This also brings better alignment with the Gutenberg repository, which has already configured `prefer-dedupe`.
Props jonsurrell.
Fixes#62190.
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