This changeset reverses the wrapping of `apply_shortcodes()` and `do_shortcode()` such that `apply_shortcodes()` is now the recommended function. In addition:
- Calls to `do_shortcode()` have been changed to `apply_shortcodes()`.
- Some default filter callbacks have been changed from `'do_shortcode'` to `'apply_shortcodes'`.
- Applicable documentation has been updated to refer to `apply_shortcodes()` instead.
Follow-up to [47004].
Props SergeyBiryukov, rafiahmedd, namithjawahar, peterwilsoncc, costdev.
Fixes#55883.
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