Commit Graph

339 Commits

Author SHA1 Message Date
Dimitris Athanasiou d9685a0f19
[7.x][ML] Validate at least one feature is available for DF analytics (#55876) (#55914)
We were previously checking at least one supported field existed
when the _explain API was called. However, in the case of analyses
with required fields (e.g. regression) we were not accounting that
the dependent variable is not a feature and thus if the source index
only contains the dependent variable field there are no features to
train a model on.

This commit adds a validation that at least one feature is available
for analysis. Note that we also move that validation away from
`ExtractedFieldsDetector` and the _explain API and straight into
the _start API. The reason for doing this is to allow the user to use
the _explain API in order to understand why they would be seeing an
error like this one.

For example, the user might be using an index that has fields but
they are of unsupported types. If they start the job and get
an error that there are no features, they will wonder why that is.
Calling the _explain API will show them that all their fields are
unsupported. If the _explain API was failing instead, there would
be no way for the user to understand why all those fields are
ignored.

Closes #55593

Backport of #55876
2020-04-29 11:39:58 +03:00
Przemysław Witek c89917c799
Register DFA jobs on putAnalytics rather than via a separate method (#55458) (#55708) 2020-04-24 10:59:32 +02:00
Dimitris Athanasiou b8379872a7
[7.x][ML] Logs error when DFA task is set to failed (#55545) (#55668)
Also unmutes the integ test that stops and restarts
an outlier detection job with the hope of learning more
of the failure in #55068.

Backport of #55545

Co-authored-by: Elastic Machine <elasticmachine@users.noreply.github.com>
2020-04-24 11:06:07 +03:00
David Roberts da5aeb8be7
[ML] Return assigned node in start/open job/datafeed response (#55570)
Adds a "node" field to the response from the following endpoints:

1. Open anomaly detection job
2. Start datafeed
3. Start data frame analytics job

If the job or datafeed is assigned to a node immediately then
this field will return the ID of that node.

In the case where a job or datafeed is opened or started lazily
the node field will contain an empty string.  Clients that want
to test whether a job or datafeed was opened or started lazily
can therefore check for this.

Backport of #55473
2020-04-22 12:06:53 +01:00
Stuart Tettemer 93a2e9b0f9
Test: MockScoreScript can be cacheable. (#55499)
Backport: 0ed1eb5
2020-04-20 17:09:58 -06:00
Benjamin Trent cabff65aec
[ML] Fixing inference stats race condition (#55163) (#55486)
`updateAndGet` could actually call the internal method more than once on contention.
If I read the JavaDocs, it says:
```* @param updateFunction a side-effect-free function```
So, it could be getting multiple updates on contention, thus having a race condition where stats are double counted.

To fix, I am going to use a `ReadWriteLock`. The `LongAdder` objects allows fast thread safe writes in high contention environments. These can be protected by the `ReadWriteLock::readLock`.

When stats are persisted, I need to call reset on all these adders. This is NOT thread safe if additions are taking place concurrently. So, I am going to protect with `ReadWriteLock::writeLock`.

This should prevent race conditions while allowing high (ish) throughput in the highly contention paths in inference.

I did some simple throughput tests and this change is not significantly slower and is simpler to grok (IMO).

closes  https://github.com/elastic/elasticsearch/issues/54786
2020-04-20 16:21:18 -04:00
Benjamin Trent fa0373a19f
[7.x] [ML] Fix log spam and disable ILM/SLM history for native ML tests (#55475)
* [ML] fix native ML test log spam (#55459)

This adds a dependency to ingest common. This removes the log spam resulting from basic plugins being enabled that require the common ingest processors.

* removing unnecessary changes

* removing unused imports

* removing unnecessary java setting
2020-04-20 15:41:30 -04:00
William Brafford 7817948926 Disable monitoring in ML multinode tests (#55461)
Removing the deprecated "xpack.monitoring.enabled" setting introduced
log spam and potentially some failures in ML tests. It's possible to use
a different, non-deprecated setting to disable monitoring, so we do that
here.
2020-04-20 10:51:16 -04:00
Przemysław Witek 7d5f74e964
Fix and unmute testSetUpgradeMode_ExistingTaskGetsUnassigned (#55368) (#55452) 2020-04-20 13:29:29 +02:00
William Brafford 49e30b15a2
Deprecate disabling basic-license features (#54816) (#55405)
We believe there's no longer a need to be able to disable basic-license
features completely using the "xpack.*.enabled" settings. If users don't
want to use those features, they simply don't need to use them. Having
such features always available lets us build more complex features that
assume basic-license features are present.

This commit deprecates settings of the form "xpack.*.enabled" for
basic-license features, excluding "security", which is a special case.
It also removes deprecated settings from integration tests and unit
tests where they're not directly relevant; e.g. monitoring and ILM are
no longer disabled in many integration tests.
2020-04-17 15:04:17 -04:00
Benjamin Trent 8c581c3388
[ML] fixing and unmuting testHRDSplit test (#55349) (#55393)
This fixes the long muted testHRDSplit. Some minor adjustments for modern day elasticsearch changes :). 

The cause of the failure is that a new `by` field entering the model with an exceptionally high count does not cause an anomaly. We have since stopped combining the `rare` and `by` in this manner. New entries in a `by` field are not anomalous because we have no history on them yet. 

closes https://github.com/elastic/elasticsearch/issues/32966
2020-04-17 09:55:52 -04:00
Benjamin Trent 2b68aa3471
muting test for issue 55068 (#55312) 2020-04-16 10:32:12 -04:00
David Roberts 8489f8c121
[ML] Add test to prove categorization state written after lookback (#55297)
When a datafeed transitions from lookback to real-time we request
that state is persisted from the autodetect process in the
background.

This PR adds a test to prove that for a categorization job the
state that is persisted includes the categorization state.
Without the fix from elastic/ml-cpp#1137 this test fails.  After
that C++ fix is merged this test should pass.

Backport of #55243
2020-04-16 11:55:18 +01:00
David Roberts 5de6ddfef2 Mute ClassificationIT.testSetUpgradeMode_ExistingTaskGetsUnassigned
Due to https://github.com/elastic/elasticsearch/issues/55221
2020-04-16 09:03:46 +01:00
William Brafford 2ba3be9db6
Remove deprecated third-party methods from tests (#55255) (#55269)
I've noticed that a lot of our tests are using deprecated static methods
from the Hamcrest matchers. While this is not a big deal in any
objective sense, it seems like a small good thing to reduce compilation
warnings and be ready for a new release of the matcher library if we
need to upgrade. I've also switched a few other methods in tests that
have drop-in replacements.
2020-04-15 17:54:47 -04:00
Dimitris Athanasiou 4000138105
[7.x][ML] Add debug logging for outlier detection stop and restart integ test (#55169) (#55202)
To understand the failures in #55068

Backport of #55169
2020-04-15 10:40:38 +03:00
Przemysław Witek d5bb574e1e
[7.x] Unassign DFA tasks in SetUpgradeModeAction (#54523) (#55143) 2020-04-14 14:09:02 +02:00
Mark Vieira cb58725164 Mute InferenceIngestIT.testPipelineIngest 2020-04-14 09:27:56 +01:00
Benjamin Trent d32f6fed1d
[ML] inference only persist if there are stats (#54752) (#55121)
We needlessly send documents to be persisted. If there are no stats added, then we should not attempt to persist them.

Also, this PR fixes the race condition that caused issue:  https://github.com/elastic/elasticsearch/issues/54786
2020-04-13 14:03:05 -04:00
Benjamin Trent c5c7ee9d73
[7.x] [ML] Start gathering and storing inference stats (#53429) (#54738)
* [ML] Start gathering and storing inference stats (#53429)

This PR enables stats on inference to be gathered and stored in the `.ml-stats-*` indices.

Each node + model_id will have its own running stats document and these will later be summed together when returning _stats to the user.

`.ml-stats-*` is ILM managed (when possible). So, at any point the underlying index could change. This means that a stats document that is read in and then later updated will actually be a new doc in a new index. This complicates matters as this means that having a running knowledge of seq_no and primary_term is complicated and almost impossible. This is because we don't know the latest index name.

We should also strive for throughput, as this code sits in the middle of an ingest pipeline (or even a query).
2020-04-13 08:15:46 -04:00
Przemysław Witek 17101d86d9
[7.x] Do not execute ML CRUD actions when upgrade mode is enabled (#54437) (#55049) 2020-04-10 16:07:11 +02:00
Ryan Ernst 37795d259a
Remove guava from transitive compile classpath (#54309) (#54695)
Guava was removed from Elasticsearch many years ago, but remnants of it
remain due to transitive dependencies. When a dependency pulls guava
into the compile classpath, devs can inadvertently begin using methods
from guava without realizing it. This commit moves guava to a runtime
dependency in the modules that it is needed.

Note that one special case is the html sanitizer in watcher. The third
party dep uses guava in the PolicyFactory class signature. However, only
calling a method on the PolicyFactory actually causes the class to be
loaded, a reference alone does not trigger compilation to look at the
class implementation. There we utilize a MethodHandle for invoking the
relevant method at runtime, where guava will continue to exist.
2020-04-07 23:20:17 -07:00
David Roberts df4ae79b41
[TEST] Unmute CategorizationIT.testNumMatchesAndCategoryPreference (#54868)
Should work again now that https://github.com/elastic/ml-cpp/issues/1121
is resolved.

Backport of #54768
2020-04-07 11:04:31 +01:00
David Roberts 470aa9a5f1 [TEST] Mute CategorizationIT.testNumMatchesAndCategoryPreference (#54717)
The test results are affected by the off-by-one error that is
fixed by https://github.com/elastic/ml-cpp/pull/1122

This test can be unmuted once that fix is merged and has been
built into ml-cpp snapshots.
2020-04-03 14:40:47 +01:00
Benjamin Trent 6e73f67f3b
[ML] unmute categorization test for native backport (#54679) 2020-04-02 17:08:19 -04:00
Benjamin Trent 7fe38935f6
[ML] add training_percent to analytics process params (#54605) (#54678)
This adds training_percent parameter to the analytics process for Classification and Regression. This parameter is then used to give more accurate memory estimations.

See native side pr: elastic/ml-cpp#1111
2020-04-02 17:08:06 -04:00
Benjamin Trent 4a1610265f
[7.x] [ML] add new inference_config field to trained model config (#54421) (#54647)
* [ML] add new inference_config field to trained model config (#54421)

A new field called `inference_config` is now added to the trained model config object. This new field allows for default inference settings from analytics or some external model builder.

The inference processor can still override whatever is set as the default in the trained model config.

* fixing for backport
2020-04-02 12:25:10 -04:00
Benjamin Trent 65233383f6
[7.x] [ML] prefer secondary authorization header for data[feed|frame] authz (#54121) (#54645)
* [ML] prefer secondary authorization header for data[feed|frame] authz (#54121)

Secondary authorization headers are to be used to facilitate Kibana spaces support + ML jobs/datafeeds.

Now on PUT/Update/Preview datafeed, and PUT data frame analytics the secondary authorization is preferred over the primary (if provided).

closes https://github.com/elastic/elasticsearch/issues/53801

* fixing for backport
2020-04-02 11:20:25 -04:00
Benjamin Trent eb31be0e71
[7.x] [ML] add num_matches and preferred_to_categories to category defintion objects (#54214) (#54639)
* [ML] add num_matches and preferred_to_categories to category defintion objects (#54214)

This adds two new fields to category definitions.

- `num_matches` indicating how many documents have been seen by this category
- `preferred_to_categories` indicating which other categories this particular category supersedes when messages are categorized.

These fields are only guaranteed to be up to date after a `_flush` or `_close`

native change: https://github.com/elastic/ml-cpp/pull/1062

* adjusting for backport
2020-04-02 09:09:19 -04:00
Jason Tedor 5fcda57b37
Rename MetaData to Metadata in all of the places (#54519)
This is a simple naming change PR, to fix the fact that "metadata" is a
single English word, and for too long we have not followed general
naming conventions for it. We are also not consistent about it, for
example, METADATA instead of META_DATA if we were trying to be
consistent with MetaData (although METADATA is correct when considered
in the context of "metadata"). This was a simple find and replace across
the code base, only taking a few minutes to fix this naming issue
forever.
2020-03-31 17:24:38 -04:00
David Roberts b8f06df53f
[ML] Fix bug, add tests, improve estimates for estimate_model_memory (#54508)
This PR:

1. Fixes the bug where a cardinality estimate of zero could cause
   a 500 status
2. Adds tests for that scenario and a few others
3. Adds sensible estimates for the cases that were previously TODO

Backport of #54462
2020-03-31 17:59:38 +01:00
Dimitris Athanasiou 6d96ca9bc8
[7.x][ML] Reenable classification and regression integ tests (#54489) (#54494)
Relates #54401

Backport of #54489
2020-03-31 17:50:08 +03:00
Dimitris Athanasiou b4b54efa73
[7.x][ML] Hyperparameter names should match config (#54401) (#54435)
Java side of elastic/ml-cpp#1096

Backport of #54401
2020-03-30 23:32:40 +03:00
Przemysław Witek d40afc7871
[7.x] Do not fail Evaluate API when the actual and predicted fields' types differ (#54255) (#54319) 2020-03-27 10:05:19 +01:00
Dimitris Athanasiou cc981fa377
[7.x][ML] Get ML filters size should default to 100 (#54207) (#54278)
When get filters is called without setting the `size`
paramter only up to 10 filters are returned. However,
100 filters should be returned. This commit fixes this
and adds an integ test to guard it.

It seems this was accidentally broken in #39976.

Closes #54206

Backport of #54207
2020-03-26 17:51:43 +02:00
Mark Vieira 7728ccd920
Encore consistent compile options across all projects (#54120)
(cherry picked from commit ddd068a7e92dc140774598664efdc15155ab05c2)
2020-03-25 08:24:21 -07:00
Dimitris Athanasiou ba09a778dc
[7.x][ML] Unmute classification cardinality integ test (#54165) (#54173)
Adjusts test to work for new cardinality limit.

Backport of #54165
2020-03-25 15:00:34 +02:00
Dimitris Athanasiou 5ce7c99e74
[7.x][ML] Data frame analytics data counts (#53998) (#54031)
This commit instruments data frame analytics
with stats for the data that are being analyzed.
In particular, we count training docs, test docs,
and skipped docs.

In order to account docs with missing values as skipped
docs for analyses that do not support missing values,
this commit changes the extractor so that it only ignores
docs with missing values when it collects the data summary,
which is used to estimate memory usage.

Backport of #53998
2020-03-24 11:30:43 +02:00
Benjamin Trent 19af869243
[ML] adds multi-class feature importance support (#53803) (#54024)
Adds multi-class feature importance calculation. 

Feature importance objects are now mapped as follows
(logistic) Regression:
```
{
   "feature_name": "feature_0",
   "importance": -1.3
}
```
Multi-class [class names are `foo`, `bar`, `baz`]
```
{ 
   “feature_name”: “feature_0”, 
   “importance”: 2.0, // sum(abs()) of class importances
   “foo”: 1.0, 
   “bar”: 0.5, 
   “baz”: -0.5 
},
```

For users to get the full benefit of aggregating and searching for feature importance, they should update their index mapping as follows (before turning this option on in their pipelines)
```
 "ml.inference.feature_importance": {
          "type": "nested",
          "dynamic": true,
          "properties": {
            "feature_name": {
              "type": "keyword"
            },
            "importance": {
              "type": "double"
            }
          }
        }
```
The mapping field name is as follows
`ml.<inference.target_field>.<inference.tag>.feature_importance`
if `inference.tag` is not provided in the processor definition, it is not part of the field path.
`inference.target_field` is defaulted to `ml.inference`.
//cc @lcawl ^ Where should we document this?

If this makes it in for 7.7, there shouldn't be any feature_importance at inference BWC worries as 7.7 is the first version to have it.
2020-03-23 18:49:07 -04:00
Benjamin Trent d276058c6c
[ML] adjusting feature importance mapping for multi-class support (#53821) (#54013)
Feature importance storage format is changing to encompass multi-class.

Feature importance objects are now mapped as follows
(logistic) Regression:
```
{
   "feature_name": "feature_0",
   "importance": -1.3
}
```
Multi-class [class names are `foo`, `bar`, `baz`]
```
{
   “feature_name”: “feature_0”,
   “importance”: 2.0, // sum(abs()) of class importances
   “foo”: 1.0,
   “bar”: 0.5,
   “baz”: -0.5
},
```

This change adjusts the mapping creation for analytics so that the field is mapped as a `nested` type.

Native side change: https://github.com/elastic/ml-cpp/pull/1071
2020-03-23 15:50:12 -04:00
Przemysław Witek 88c5d520b3
[7.x] Verify that the field is aggregatable before attempting cardinality aggregation (#53874) (#54004) 2020-03-23 19:36:33 +01:00
Przemysław Witek a68071dbba
[7.x] Delete empty .ml-state* indices during nightly maintenance task. (#53587) (#53849) 2020-03-20 13:08:36 +01:00
Jake Landis db3420d757
[7.x] Optimize which Rest resources are used by the Rest tests… (#53766)
This should help with Gradle's incremental compile such that projects
only depend upon the resources they use.

related #52114
2020-03-19 12:28:59 -05:00
Przemysław Witek ec13c093df
Make ML index aliases hidden (#53160) (#53710) 2020-03-18 10:28:45 +01:00
Przemysław Witek 376b2ae735
[7.x] Make classification evaluation metrics work when there is field mapping type mismatch (#53458) (#53601) 2020-03-16 15:38:56 +01:00
Dimitris Athanasiou 94da4ca3fc
[7.x][ML] Extend classification to support multiple classes (#53539) (#53597)
Prepares classification analysis to support more than just
two classes. It introduces a new parameter to the process config
which dictates the `num_classes` to the process. It also
changes the max classes limit to `30` provisionally.

Backport of #53539
2020-03-16 15:00:54 +02:00
Benjamin Trent 4e43ede735
[ML] renaming inference processor field field_mappings to new name field_map (#53433) (#53502)
This renames the `inference` processor configuration field `field_mappings` to `field_map`.

`field_mappings` is now deprecated.
2020-03-13 15:40:57 -04:00
Tom Veasey 690099553c
[7.x][ML] Adds the class_assignment_objective parameter to classification (#53552)
Adds a new parameter for classification that enables choosing whether to assign labels to
maximise accuracy or to maximise the minimum class recall.

Fixes #52427.
2020-03-13 17:35:51 +00:00
Benjamin Trent 89668c5ea0
[ML][Inference] adds new default_field_map field to trained models (#53294) (#53419)
Adds a new `default_field_map` field to trained model config objects.

This allows the model creator to supply field map if it knows that there should be some map for inference to work directly against the training data.

The use case internally is having analytics jobs supply a field mapping for multi-field fields. This allows us to use the model "out of the box" on data where we trained on `foo.keyword` but the `_source` only references `foo`.
2020-03-11 13:49:39 -04:00
Przemysław Witek 8c4c19d310
Perform evaluation in multiple steps when necessary (#53295) (#53409) 2020-03-11 15:36:38 +01:00
Przemysław Witek 063957b7d8
Simplify "refresh" calls. (#53385) (#53393) 2020-03-11 12:26:11 +01:00
Dimitris Athanasiou 0fd0516d0d
[7.x][ML] Rename data frame analytics maximum_number_trees to max_trees (#53300) (#53390)
Deprecates `maximum_number_trees` parameter of classification and
regression and replaces it with `max_trees`.

Backport of #53300
2020-03-11 12:45:27 +02:00
Przemysław Witek d54d7f2be0
[7.x] Implement ILM policy for .ml-state* indices (#52356) (#53327) 2020-03-10 14:24:18 +01:00
Benjamin Trent 856d9bfbc1
[ML] fixing data frame analysis test when two jobs are started in succession quickly (#53192) (#53332)
A previous change (#53029) is causing analysis jobs to wait for certain indices to be made available. While this it is good for jobs to wait, they could fail early on _start. 

This change will cause the persistent task to continually retry node assignment when the failure is due to shards not being available.

If the shards are not available by the time `timeout` is reached by the predicate, it is treated as a _start failure and the task is canceled. 

For tasks seeking a new assignment after a node failure, that behavior is unchanged.


closes #53188
2020-03-10 08:30:47 -04:00
Mayya Sharipova f96ad5c32d Mute testSingleNumericFeatureAndMixedTrainingAndNonTrainingRows 2020-03-06 12:48:05 -05:00
Mark Vieira 09a3f45880
Mute ClassificationIT.testTwoJobsWithSameRandomizeSeedUseSameTrainingSet
Signed-off-by: Mark Vieira <portugee@gmail.com>
2020-03-06 07:38:04 -08:00
James Baiera 01f00df5cd
Mute RegressionIT.testTwoJobsWithSameRandomizeSeedUseSameTrainingSet 2020-03-06 07:37:57 -08:00
Dimitris Athanasiou 9abf537527
[7.x][ML] Improve DF analytics audits and logging (#53179) (#53218)
Adds audits for when the job starts reindexing, loading data,
analyzing, writing results. Also adds some info logging.

Backport of #53179
2020-03-06 13:47:27 +02:00
Benjamin Trent af0b1c2860
[ML] Fix minor race condition in dataframe analytics _stop (#53029) (#53164)
Tests have been periodically failing due to a race condition on checking a recently `STOPPED` task's state. The `.ml-state` index is not created until the task has already been transitioned to `STARTED`. This allows the `_start` API call to return. But, if a user (or test) immediately attempts to `_stop` that job, the job could stop and the task removed BEFORE the `.ml-state|stats` indices are created/updated.

This change moves towards the task cleaning up itself in its main execution thread. `stop` flips the flag of the task to `isStopping` and now we check `isStopping` at every necessary method. Allowing the task to gracefully stop.

closes #53007
2020-03-05 09:59:18 -05:00
Yang Wang 70814daa86
Allow _rollup_search with read privilege (#52043) (#53047)
Currently _rollup_search requires manage privilege to access. It should really be
a read only operation. This PR changes the requirement to be read indices privilege.

Resolves: #50245
2020-03-03 22:29:54 +11:00
Mark Vieira f8396e8d15
Mute RunDataFrameAnalyticsIT.testStopOutlierDetectionWithEnoughDocumentsToScroll
Signed-off-by: Mark Vieira <portugee@gmail.com>
2020-03-02 09:21:55 -08:00
Benjamin Trent 19a6c5d980
[7.x] [ML][Inference] Add support for multi-value leaves to the tree model (#52531) (#52901)
* [ML][Inference] Add support for multi-value leaves to the tree model (#52531)

This adds support for multi-value leaves. This is a prerequisite for multi-class boosted tree classification.
2020-02-27 14:05:28 -05:00
Benjamin Trent eac38e9847
[ML] Add indices_options to datafeed config and update (#52793) (#52905)
This adds a new configurable field called `indices_options`. This allows users to create or update the indices_options used when a datafeed reads from an index.

This is necessary for the following use cases:
 - Reading from frozen indices
 - Allowing certain indices in multiple index patterns to not exist yet

These index options are available on datafeed creation and update. Users may specify them as URL parameters or within the configuration object.

closes https://github.com/elastic/elasticsearch/issues/48056
2020-02-27 13:43:25 -05:00
David Kyle d8bdf31110 Revert "Mute RunDataFrameAnalyticsIT.testOutlierDetectionStopAndRestart"
This reverts commit ad3a3b1af9.
2020-02-27 12:38:13 +00:00
Jake Landis b4179a8814
[7.x] Refactor watcher tests (#52799) (#52844)
This PR moves the majority of the Watcher REST tests under
the Watcher x-pack plugin.

Specifically, moves the Watcher tests from:
x-pack/plugin/test
x-pack/qa/smoke-test-watcher
x-pack/qa/smoke-test-watcher-with-security
x-pack/qa/smoke-test-monitoring-with-watcher

to:
x-pack/plugin/watcher/qa/rest (/test and /qa/smoke-test-watcher)
x-pack/plugin/watcher/qa/with-security
x-pack/plugin/watcher/qa/with-monitoring

Additionally, this disables Watcher from the main
x-pack test cluster and consolidates the stop/start logic
for the tests listed.

No changes to the tests (beyond moving them) are included.

3rd party tests and doc tests (which also touch Watcher)
are not included in the changes here.
2020-02-26 15:57:10 -06:00
David Kyle ad3a3b1af9 Mute RunDataFrameAnalyticsIT.testOutlierDetectionStopAndRestart 2020-02-26 14:31:00 +00:00
Jake Landis 8d311297ca
[7.x] Smarter copying of the rest specs and tests (#52114) (#52798)
* Smarter copying of the rest specs and tests (#52114)

This PR addresses the unnecessary copying of the rest specs and allows
for better semantics for which specs and tests are copied. By default
the rest specs will get copied if the project applies
`elasticsearch.standalone-rest-test` or `esplugin` and the project
has rest tests or you configure the custom extension `restResources`.

This PR also removes the need for dozens of places where the x-pack
specs were copied by supporting copying of the x-pack rest specs too.

The plugin/task introduced here can also copy the rest tests to the
local project through a similar configuration.

The new plugin/task allows a user to minimize the surface area of
which rest specs are copied. Per project can be configured to include
only a subset of the specs (or tests). Configuring a project to only
copy the specs when actually needed should help with build cache hit
rates since we can better define what is actually in use.
However, project level optimizations for build cache hit rates are
not included with this PR.

Also, with this PR you can no longer use the includePackaged flag on
integTest task.

The following items are included in this PR:
* new plugin: `elasticsearch.rest-resources`
* new tasks: CopyRestApiTask and CopyRestTestsTask - performs the copy
* new extension 'restResources'
```
restResources {
  restApi {
    includeCore 'foo' , 'bar' //will include the core specs that start with foo and bar
    includeXpack 'baz' //will include x-pack specs that start with baz
  }
  restTests {
    includeCore 'foo', 'bar' //will include the core tests that start with foo and bar
    includeXpack 'baz' //will include the x-pack tests that start with baz
  }
}

```
2020-02-26 08:13:41 -06:00
David Kyle de3d674bb7 Revert "Mute RunDataFrameAnalyticsIT.testOutlierDetectionStopAndRestart"
This reverts commit c4d91143ac.
2020-02-24 15:22:49 +00:00
Benjamin Trent afd90647c9
[ML] Adds feature importance to option to inference processor (#52218) (#52666)
This adds machine learning model feature importance calculations to the inference processor.

The new flag in the configuration matches the analytics parameter name: `num_top_feature_importance_values`
Example:
```
"inference": {
   "field_mappings": {},
   "model_id": "my_model",
   "inference_config": {
      "regression": {
         "num_top_feature_importance_values": 3
      }
   }
}
```

This will write to the document as follows:
```
"inference" : {
   "feature_importance" : {
      "FlightTimeMin" : -76.90955548511226,
      "FlightDelayType" : 114.13514762158526,
      "DistanceMiles" : 13.731580450792187
   },
   "predicted_value" : 108.33165831875137,
   "model_id" : "my_model"
}
```

This is done through calculating the [SHAP values](https://arxiv.org/abs/1802.03888).

It requires that models have populated `number_samples` for each tree node. This is not available to models that were created before 7.7.

Additionally, if the inference config is requesting feature_importance, and not all nodes have been upgraded yet, it will not allow the pipeline to be created. This is to safe-guard in a mixed-version environment where only some ingest nodes have been upgraded.

NOTE: the algorithm is a Java port of the one laid out in ml-cpp: https://github.com/elastic/ml-cpp/blob/master/lib/maths/CTreeShapFeatureImportance.cc

usability blocked by: https://github.com/elastic/ml-cpp/pull/991
2020-02-21 18:42:31 -05:00
Jack Conradson c4d91143ac Mute RunDataFrameAnalyticsIT.testOutlierDetectionStopAndRestart
Relates: #52654
2020-02-21 09:32:19 -08:00
Przemysław Witek b84e8db7b5
[7.x] Rename .ml-state index to .ml-state-000001 to support rollover (#52510) (#52595) 2020-02-21 08:55:59 +01:00
Benjamin Trent 2a5c181dda
[ML][Inference] don't return inflated definition when storing trained models (#52573) (#52580)
When `PUT` is called to store a trained model, it is useful to return the newly create model config. But, it is NOT useful to return the inflated definition.

These definitions can be large and returning the inflated definition causes undo work on the server and client side.

Co-authored-by: Elastic Machine <elasticmachine@users.noreply.github.com>
2020-02-20 19:47:29 -05:00
Benjamin Trent 013d5c2d24
[ML] Adds support for a global calendar via `_all` (#50372) (#52578)
This adds `_all` to Calendar searches. This enables users to supply the `_all` string in the `job_ids` array when creating a Calendar. That calendar will now be applied to all jobs (existing and newly created).

Closes #45013

Co-authored-by: Elastic Machine <elasticmachine@users.noreply.github.com>
2020-02-20 17:22:59 -05:00
David Kyle 7bbe5c8464
[Ml] Validate tree feature index is within range (#52514)
This changes the tree validation code to ensure no node in the tree has a
feature index that is beyond the bounds of the feature_names array.
Specifically this handles the situation where the C++ emits a tree containing
a single node and an empty feature_names list. This is valid tree used to
centre the data in the ensemble but the validation code would reject this
as feature_names is empty. This meant a broken workflow as you cannot GET
the model and PUT it back
2020-02-19 14:41:43 +00:00
Przemysław Witek 7cd997df84
[ML] Make ml internal indices hidden (#52423) (#52509) 2020-02-19 14:02:32 +01:00
Dimitris Athanasiou ad56802ac6
[7.x][ML] Refactor ML mappings and templates into JSON resources (#51… (#52353)
ML mappings and index templates have so far been created
programmatically. While this had its merits due to static typing,
there is consensus it would be clear to maintain those in json files.
In addition, we are going to adding ILM policies to these indices
and the component for a plugin to register ILM policies is
`IndexTemplateRegistry`. It expects the templates to be in resource
json files.

For the above reasons this commit refactors ML mappings and index
templates into json resource files that are registered via
`MlIndexTemplateRegistry`.

Backport of #51765
2020-02-14 17:16:06 +02:00
David Roberts 473468d763 [ML] Better error when persistent task assignment disabled (#52014)
Changes the misleading error message when attempting to open
a job while the "cluster.persistent_tasks.allocation.enable"
setting is set to "none" to a clearer message that names the
setting.

Closes #51956
2020-02-11 15:23:21 +00:00
Benjamin Trent 846f87a26e
[ML] allow close/stop for jobs/datafeeds with missing configs (#51888) (#51997)
If the configs are removed (by some horrific means), we should still allow tasks to be cleaned up easily.

Datafeeds and jobs with missing configs are now visible in their respective _stats calls and can be stopped/closed.
2020-02-06 12:10:18 -05:00
Benjamin Trent 1380dd439a
[7.x] [ML][Inference] Fix weighted mode definition (#51648) (#51695)
* [ML][Inference] Fix weighted mode definition (#51648)

Weighted mode inaccurately assumed that the "max value" of the input values would be the maximum class value. This does not make sense. 

Weighted Mode should know how many classes there are. Hence the new parameter `num_classes`. This indicates what the maximum class value to be expected.
2020-01-30 15:33:25 -05:00
Przemysław Witek 683170b007
Increase the number of indexed documents to increase a chance that there are at least 2 training rows. (#51607) (#51615) 2020-01-29 17:17:19 +01:00
Benjamin Trent fc994d9ce1
[ML][Inference] Adds validations for model PUT (#51376) (#51409)
Adds validations making sure that

* `input.field_names` is not empty
* `ensemble.trained_models` is not empty
* `tree.feature_names` is not empty

closes https://github.com/elastic/elasticsearch/issues/51354
2020-01-24 09:29:12 -05:00
David Kyle ca4b90a001
[ML] Calculate results and snapshot retention using latest bucket timestamps (#51061) (#51301)
The retention period is calculated relative to the last bucket result or snapshot
time rather than wall clock
2020-01-22 14:52:33 +00:00
Dimitris Athanasiou 59687a9384
[7.x][ML] Validate classification dependent_variable cardinality is at lea… (#51232) (#51309)
Data frame analytics classification currently only supports 2 classes for the
dependent variable. We were checking that the field's cardinality is not higher
than 2 but we should also check it is not less than that as otherwise the process
fails.

Backport of #51232
2020-01-22 16:51:16 +02:00
Benjamin Trent 2a73e849d6
[ML][Inference] fixing ingest IT tests (#51267) (#51311)
Converts InferenceIngestIT into a `ESRestTestCase`.

closes #51201
2020-01-22 09:50:17 -05:00
Przemysław Witek bfcfcdee33
[7.x] Do not copy mapping from dependent variable to prediction field in regression analysis (#51227) (#51288) 2020-01-22 12:36:24 +01:00
David Roberts 0fa7db9a95 [ML] Make datafeeds work with nanosecond time fields (#51180)
Allows ML datafeeds to work with time fields that have
the "date_nanos" type _and make use of the extra precision_.
(Previously datafeeds only worked with time fields that were
exact multiples of milliseconds.  So datafeeds would work
with "date_nanos" only if the extra precision over "date" was
not used.)

Relates #49889
2020-01-21 09:59:50 +00:00
Tom Veasey 32ec934b15
[7.x][ML] Assert top classes are ordered by score (#51028)
Backport #51003.
2020-01-16 12:23:15 +00:00
Benjamin Trent 72c270946f
[ML][Inference] Adding classification_weights to ensemble models (#50874) (#50994)
* [ML][Inference] Adding classification_weights to ensemble models

classification_weights are a way to allow models to
prefer specific classification results over others
this might be advantageous if classification value
probabilities are a known quantity and can improve
model error rates.
2020-01-14 12:40:25 -05:00
Tom Veasey de5713fa4b
[ML] Disable invalid assertion (#50988)
Backport #50986.
2020-01-14 17:35:00 +00:00
Dimitris Athanasiou 1d8cb3c741
[7.x][ML] Add num_top_feature_importance_values param to regression and classi… (#50914) (#50976)
Adds a new parameter to regression and classification that enables computation
of importance for the top most important features. The computation of the importance
is based on SHAP (SHapley Additive exPlanations) method.

Backport of #50914
2020-01-14 16:46:09 +02:00
Przemysław Witek 9c6ffdc2be
[7.x] Handle nested and aliased fields correctly when copying mapping. (#50918) (#50968) 2020-01-14 14:43:39 +01:00
Benjamin Trent fa116a6d26
[7.x] [ML][Inference] PUT API (#50852) (#50887)
* [ML][Inference] PUT API (#50852)

This adds the `PUT` API for creating trained models that support our format.

This includes

* HLRC change for the API
* API creation
* Validations of model format and call

* fixing backport
2020-01-12 10:59:11 -05:00
Dimitris Athanasiou 422422a2bc
[7.x][ML] Reuse SourceDestValidator for data frame analytics (#50841) (#50850)
This commit removes validation logic of source and dest indices
for data frame analytics and replaces it with using the common
`SourceDestValidator` class which is already used by transforms.
This way the validations and their messages become consistent
while we reduce code.

This means that where these validations fail the error messages
will be slightly different for data frame analytics.

Backport of #50841
2020-01-10 14:24:13 +02:00
Benjamin Trent cc0e64572a
[ML][Inference][HLRC] Add necessary lang ident classes (#50705) (#50794)
This adds the necessary named XContent classes to the HLRC for the lang ident model. This is so the HLRC can call `GET _ml/inference/lang_ident_model_1?include_definition=true` without XContent parsing errors.

The constructors are package private as since this classes are used exclusively within the pre-packaged model (and require the specific weights, etc. to be of any use).
2020-01-09 10:33:38 -05:00
Benjamin Trent 060e0a6277
[ML][Inference] Add support for models shipped as resources (#50680) (#50700)
This adds support for models that are shipped as resources in the ML plugin. The first of which is the `lang_ident` model.
2020-01-07 09:21:59 -05:00
Przemysław Witek 4116452d90
Implement testStopAndRestart for ClassificationIT (#50585) (#50698) 2020-01-07 13:41:37 +01:00
Przemysław Witek 8917c05df8
[7.x] Synchronize processInStream.close() call (#50581) 2020-01-03 10:23:51 +01:00
Przemysław Witek 4ecabe496f
Mute testStopAndRestart test case (#50551) 2020-01-02 15:28:20 +01:00
Christoph Büscher 1599af8428 Fix type conversion problem in Eclipse (#50549)
Eclipse 4.13 shows a type mismatch error in the affected line because it cannot
correctly infer the boolean return type for the method call. Assigning return
value to a local variable resolves this problem.
2020-01-02 14:29:20 +01:00
Przemysław Witek 3e3a93002f
[7.x] Fix accuracy metric (#50310) (#50433) 2019-12-20 15:34:38 +01:00