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A CCR test failure shows that the approach in #34474 is flawed. Restoring the LocalCheckpointTracker from an index commit can cause both FollowingEngine and InternalEngine to incorrectly ignore some deletes. Here is a small scenario illustrating the problem: 1. Delete doc with seq=1 => engine will add a delete tombstone to Lucene 2. Flush a commit consisting of only the delete tombstone 3. Index doc with seq=0 => engine will add that doc to Lucene but soft-deleted 4. Restart an engine with the commit (step 2); the engine will fill its LocalCheckpointTracker with the delete tombstone in the commit 5. Replay the local translog in reverse order: index#0 then delete#1 6. When process index#0, an engine will add it into Lucene as a live doc and advance the local checkpoint to 1 (seq#1 was restored from the commit - step 4). 7. When process delete#1, an engine will skip it because seq_no=1 is less than or equal to the local checkpoint. We should have zero document after recovering from translog, but here we have one. Since all operations after the local checkpoint of the safe commit are retained, we should find them if the look-up considers also soft-deleted documents. This PR fills the disparity between the version map and the local checkpoint tracker by taking soft-deleted documents into account while resolving strategy for engine operations. Relates #34474 Relates #33656