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hapi-fhir/hapi-fhir-jpaserver-uhnfhir.../derby_maintenance.txt

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Add tests and get :below queries working for built-in code systems
2016-07-01 08:51:47 -04:00
call SYSCS_UTIL.SYSCS_COMPRESS_TABLE('SA', 'HFJ_SEARCH_RESULT', 1);
CALL SYSCS_UTIL.SYSCS_INPLACE_COMPRESS_TABLE( 'SA', 'HFJ_SEARCH_RESULT', 0, 0, 1 );
Correctly handle custom types in programatic access to JPA
2016-09-27 14:22:48 -04:00
dd if=/dev/urandom of=/opt/glassfish/tmp.tmp bs=1M count=500
Fix #477 - Gracefully handle unexpected elements starting with _
2016-11-15 05:44:45 -05:00
# Reindex
curl -H "Authorization: Bearer " "http://fhirtest.uhn.ca/baseDstu3/\$mark-all-resources-for-reindexing"
# Delete all errored resources
update hfj_res_ver set forced_id_pid = null where res_id in (select res_id from hfj_resource where sp_index_status = 2);
update hfj_resource set forced_id_pid = null where res_id in (select res_id from hfj_resource where sp_index_status = 2);
Small perf improvement for JPA terminology
2017-08-24 13:06:47 -04:00
delete from hfj_history_tag where res_id in (select res_id from hfj_resource where sp_index_status = 2);
Fix #477 - Gracefully handle unexpected elements starting with _
2016-11-15 05:44:45 -05:00
delete from hfj_res_ver where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_forced_id where resource_pid in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_res_link where src_resource_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_res_link where target_resource_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_spidx_coords where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_spidx_date where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_spidx_number where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_spidx_quantity where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_spidx_string where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_spidx_token where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_spidx_uri where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_res_tag where res_id in (select res_id from hfj_resource where sp_index_status = 2);
delete from hfj_search_result where resource_pid in (select res_id from hfj_resource where sp_index_status = 2);
uto register subscriptions on startup
2017-08-31 06:46:26 -04:00
delete from hfj_res_param_present where res_id in (select res_id from hfj_resource where sp_index_status = 2);
Fix #477 - Gracefully handle unexpected elements starting with _
2016-11-15 05:44:45 -05:00
delete from hfj_resource where res_id in (select res_id from hfj_resource where sp_index_status = 2);
Maintenance update
2017-08-24 13:07:27 -04:00
# Delete resource by id
delete from hfj_res_link where src_resource_id = 16940 or target_resource_id = 16940;
delete from hfj_spidx_date where res_id = 16940;
delete from hfj_spidx_string where res_id = 16940;
delete from hfj_spidx_token where res_id = 16940;
delete from hfj_spidx_uri where res_id = 16940;
delete from hfj_spidx_quantity where res_id = 16940;
delete from hfj_search_result where resource_pid = 16940;
delete from hfj_res_ver where res_id = 16940;
delete from hfj_res_param_present where res_id = 16940;
update hfj_resource set forced_id_pid = null where res_id = 16940;
delete from hfj_forced_id where resource_pid = 16940;
delete from hfj_resource where res_id = 16940;
Work on IG Pack uploading
2017-09-07 23:33:19 -04:00
# Drop all tables
drop table hfj_history_tag cascade constraints;
drop table hfj_res_ver cascade constraints;
drop table hfj_forced_id cascade constraints;
drop table hfj_res_link cascade constraints;
drop table hfj_res_link cascade constraints;
drop table hfj_spidx_coords cascade constraints;
drop table hfj_spidx_date cascade constraints;
drop table hfj_spidx_number cascade constraints;
drop table hfj_spidx_quantity cascade constraints;
drop table hfj_spidx_string cascade constraints;
drop table hfj_spidx_token cascade constraints;
drop table hfj_spidx_uri cascade constraints;
drop table hfj_res_tag cascade constraints;
drop table hfj_search_result cascade constraints;
drop table hfj_res_param_present cascade constraints;
drop table hfj_resource cascade constraints;
drop table hfj_idx_cmp_string_uniq cascade constraints;
drop table hfj_search cascade constraints;
drop table hfj_search_include cascade constraints;
drop table hfj_search_parm cascade constraints;
drop table hfj_subscription cascade constraints;
drop table hfj_subscription_flag_res cascade constraints;
drop table hfj_tag_def cascade constraints;
drop table trm_codesystem cascade constraints;
drop table trm_codesystem_var cascade constraints;
drop table trm_concept cascade constraints;
drop table trm_concept_pc_link cascade constraints;
drop table trm_concept_property cascade constraints;
Maintenance update
2017-08-24 13:07:27 -04:00
Squashed commit of the following: commit 7ff895de773fe5a56534fa2f34c2b70c4acc3e5a Author: James Agnew <jamesagnew@gmail.com> Date: Fri Oct 6 15:25:06 2017 -0400 More test fixes commit c9fee23e48f9bdde4948413ea410b75a826c56b7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Oct 6 15:14:52 2017 -0400 More tests work commit c796e19458417debf596c84dc007bcec2fbb8229 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Oct 6 15:00:26 2017 -0400 Get tests passing commit eb2787d30c4152ed0c65b1e21845bffea9d0568c Author: James Agnew <jamesagnew@gmail.com> Date: Fri Oct 6 14:08:23 2017 -0400 Add an optimistic lock to the ResourceTable commit ff85503acb2fbe352bf3bb43c5e2c0a52bbfbdc7 Author: James <jamesagnew@gmail.com> Date: Fri Oct 6 08:56:35 2017 -0400 Add a test
2017-10-06 15:33:24 -04:00
# Delete all resources
update hfj_res_ver set forced_id_pid = null where res_id in (select res_id from hfj_resource);
update hfj_resource set forced_id_pid = null where res_id in (select res_id from hfj_resource);
delete from hfj_history_tag where res_id in (select res_id from hfj_resource);
delete from hfj_res_ver where res_id in (select res_id from hfj_resource);
delete from hfj_forced_id where resource_pid in (select res_id from hfj_resource);
delete from hfj_res_link where src_resource_id in (select res_id from hfj_resource);
delete from hfj_res_link where target_resource_id in (select res_id from hfj_resource);
delete from hfj_spidx_coords where res_id in (select res_id from hfj_resource);
delete from hfj_spidx_date where res_id in (select res_id from hfj_resource);
delete from hfj_spidx_number where res_id in (select res_id from hfj_resource);
delete from hfj_spidx_quantity where res_id in (select res_id from hfj_resource);
delete from hfj_spidx_string where res_id in (select res_id from hfj_resource);
delete from hfj_spidx_token where res_id in (select res_id from hfj_resource);
delete from hfj_spidx_uri where res_id in (select res_id from hfj_resource);
delete from hfj_res_tag where res_id in (select res_id from hfj_resource);
delete from hfj_search_result where resource_pid in (select res_id from hfj_resource);
delete from hfj_res_param_present where res_id in (select res_id from hfj_resource);
Don't deliver subscription results for deleetd resource
2018-02-19 20:58:55 -05:00
delete from hfj_idx_cmp_string_uniq where res_id in (select res_id from hfj_resource);
delete from hfj_subscription_stats where res_id in (select res_id from hfj_resource);
Squashed commit of the following: commit 7ff895de773fe5a56534fa2f34c2b70c4acc3e5a Author: James Agnew <jamesagnew@gmail.com> Date: Fri Oct 6 15:25:06 2017 -0400 More test fixes commit c9fee23e48f9bdde4948413ea410b75a826c56b7 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Oct 6 15:14:52 2017 -0400 More tests work commit c796e19458417debf596c84dc007bcec2fbb8229 Author: James Agnew <jamesagnew@gmail.com> Date: Fri Oct 6 15:00:26 2017 -0400 Get tests passing commit eb2787d30c4152ed0c65b1e21845bffea9d0568c Author: James Agnew <jamesagnew@gmail.com> Date: Fri Oct 6 14:08:23 2017 -0400 Add an optimistic lock to the ResourceTable commit ff85503acb2fbe352bf3bb43c5e2c0a52bbfbdc7 Author: James <jamesagnew@gmail.com> Date: Fri Oct 6 08:56:35 2017 -0400 Add a test
2017-10-06 15:33:24 -04:00
delete from hfj_resource where res_id in (select res_id from hfj_resource);
Don't deliver subscription results for deleetd resource
2018-02-19 20:58:55 -05:00
# Correct Version issues
update hfj_resource
set res_ver = res_ver + 1
where res_id in (
select distinct res.res_id from hfj_resource res
inner join hfj_res_ver rv on (rv.res_id = res.res_id)
where ((res.res_ver + 1) = (rv.res_ver))
)
FIx test issues
2018-05-21 13:07:11 -04:00
# Oracle
More work on loinc
2018-03-19 08:51:02 -04:00
drop table hfj_history_tag cascade constraints;
drop table hfj_forced_id cascade constraints;
drop table hfj_res_link cascade constraints;
drop table hfj_spidx_coords cascade constraints;
drop table hfj_spidx_date cascade constraints;
drop table hfj_spidx_number cascade constraints;
drop table hfj_spidx_quantity cascade constraints;
drop table hfj_spidx_string cascade constraints;
drop table hfj_spidx_token cascade constraints;
drop table hfj_spidx_uri cascade constraints;
drop table hfj_res_tag cascade constraints;
drop table hfj_search_result cascade constraints;
drop table hfj_search_include cascade constraints;
drop table hfj_search cascade constraints;
drop table hfj_res_param_present cascade constraints;
Syntax fixes for the JPA migrator
2018-11-30 12:39:37 -05:00
DROP TABLE HFJ_RES_REINDEX_JOB cascade constraints;
DROP TABLE HFJ_SEARCH_PARM cascade constraints;
DROP TABLE HFJ_TAG_DEF cascade CONSTRAINTS;
More work on loinc
2018-03-19 08:51:02 -04:00
drop table hfj_idx_cmp_string_uniq cascade constraints;
drop table hfj_subscription_stats cascade constraints;
drop table trm_concept_property cascade constraints;
drop table trm_concept_pc_link cascade constraints;
drop table trm_concept cascade constraints;
drop table trm_codesystem_ver cascade constraints;
drop table trm_codesystem cascade constraints;
DROP TABLE hfj_resource CASCADE CONSTRAINTS;
DROP TABLE hfj_res_ver CASCADE CONSTRAINTS;
Syntax fixes for the JPA migrator
2018-11-30 12:39:37 -05:00
DROP TABLE TRM_CONCEPT_DESIG CASCADE CONSTRAINTS;
DROP TABLE TRM_CONCEPT_MAP CASCADE CONSTRAINTS;
DROP TABLE TRM_CONCEPT_MAP_GROUP CASCADE CONSTRAINTS;
DROP TABLE TRM_CONCEPT_MAP_GRP_ELEMENT CASCADE CONSTRAINTS;
DROP TABLE TRM_CONCEPT_MAP_GRP_ELM_TGT CASCADE CONSTRAINTS;
Maintenance update
2017-08-24 13:07:27 -04:00
Updates
2018-06-16 14:10:15 -04:00
Add skeleton for the $process-message operation in JPA erver
2018-07-12 17:52:24 -04:00
drop table hfj_history_tag cascade;
drop table hfj_forced_id cascade;
drop table hfj_res_link cascade;
drop table hfj_spidx_coords cascade;
drop table hfj_spidx_date cascade;
drop table hfj_spidx_number cascade;
drop table hfj_spidx_quantity cascade;
drop table hfj_spidx_string cascade;
drop table hfj_spidx_token cascade;
drop table hfj_spidx_uri cascade;
drop table hfj_res_tag cascade;
drop table hfj_search_result cascade;
drop table hfj_search_include cascade;
drop table hfj_search cascade;
drop table hfj_res_param_present cascade;
drop table hfj_idx_cmp_string_uniq cascade;
drop table hfj_subscription_stats cascade;
drop table trm_concept_property cascade;
drop table trm_concept_pc_link cascade;
drop table trm_concept cascade;
drop table trm_codesystem_ver cascade;
drop table trm_codesystem cascade;
DROP TABLE hfj_resource cascade;
DROP TABLE hfj_res_ver cascade;
drop table hfj_search_parm cascade;
drop table hfj_tag_def cascade;
drop index IDX_FORCEDID_TYPE_FORCEDID;
alter table hfj_forced_id drop constraint idx_forcedid_type_resid;
Updates
2018-06-16 14:10:15 -04:00
Upgrading
drop index IDX_SP_STRING;
Improve indexing
2018-06-27 18:33:04 -04:00
create index IDX_SP_STRING_HASH_NRM;
create index IDX_SP_STRING_HASH_EXCT;
Updates
2018-06-16 14:10:15 -04:00
drop index IDX_SP_TOKEN;
drop index IDX_SP_TOKEN_UNQUAL;
Improve indexing
2018-06-27 18:33:04 -04:00
create index IDX_SP_TOKEN_HASH;
create index IDX_SP_TOKEN_HASH_S;
create index IDX_SP_TOKEN_HASH_SV;
create index IDX_SP_TOKEN_HASH_V;
drop index IDX_SP_DATE;
create index IDX_SP_DATE_HASH;
drop index IDX_SP_QUANTITY;
create index IDX_SP_QUANTITY_HASH;
create index IDX_SP_QUANTITY_HASH_UN;
Fix expunge transaction boundaries
2018-06-25 10:22:49 -04:00
drop index IDX_FORCEDID_TYPE_FORCEDID;
Add skeleton for the $process-message operation in JPA erver
2018-07-12 17:52:24 -04:00
alter table hfj_forced_id drop constraint idx_forcedid_type_resid;
Fix expunge transaction boundaries
2018-06-25 10:22:49 -04:00
create index IDX_FORCEDID_TYPE_FID;
Improve indexing
2018-06-27 18:33:04 -04:00
drop index IDX_SP_NUMBER;
create index IDX_SP_NUMBER_HASH_VAL;
Work on presence API
2018-06-29 14:32:08 -04:00
drop column SP_ID from table HFJ_RES_PARAM_PRESENT;
drop index IDX_SEARCHPARM_RESTYPE_SPNAME;
drop index IDX_RESPARMPRESENT_SPID_RESID;
drop table HFJ_SEARCH_PARM;
Add equivalency flag to reverse lookup
2018-08-11 09:55:28 -04:00
# Delete everything
update hfj_res_ver set forced_id_pid = null where res_id in (select res_id from hfj_resource);
update hfj_resource set forced_id_pid = null where res_id in (select res_id from hfj_resource);
delete from hfj_history_tag where res_id in (select res_id from hfj_resource);
delete from hfj_res_ver where res_id in (select res_id from hfj_resource);
delete from hfj_forced_id where resource_pid in (select res_id from hfj_resource);
delete from hfj_res_link where src_resource_id in (select res_id from hfj_resource);
delete from hfj_res_link where target_resource_id in (select res_id from hfj_resource);
delete from hfj_spidx_coords;
delete from hfj_spidx_date;
delete from hfj_spidx_number;
delete from hfj_spidx_quantity;
delete from hfj_spidx_string;
delete from hfj_spidx_token;
delete from hfj_spidx_uri;
delete from hfj_res_tag;
delete from hfj_search_result;
delete from hfj_res_param_present;
delete from hfj_idx_cmp_string_uniq;
delete from hfj_subscription_stats;
DELETE FROM TRM_CONCEPT_MAP_GRP_ELM_TGT;
DELETE FROM TRM_CONCEPT_MAP_GRP_ELEMENT;
DELETE FROM TRM_CONCEPT_MAP_GROUP;
DELETE FROM TRM_CONCEPT_MAP;
DELETE FROM TRM_CONCEPT_DESIG;
DELETE FROM TRM_CONCEPT_PC_LINK;
DELETE FROM TRM_CONCEPT_PROPERTY;
DELETE FROM TRM_CONCEPT;
DELETE FROM TRM_CODESYSTEM_VER;
DELETE FROM TRM_CODESYSTEM;
delete from hfj_resource;
Don't re-activate already active identical subscriptions
2018-08-17 11:56:33 -04:00
# Delete All (Oracle)
DROP TABLE HFJ_FORCED_ID CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_res_ver CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_resource CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_history_tag CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_res_ver CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_forced_id CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_res_link CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_res_link CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_spidx_coords CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_spidx_date CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_spidx_number CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_spidx_quantity CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_spidx_string CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_spidx_token CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_spidx_uri CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_res_tag CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_search_result CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_res_param_present CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_idx_cmp_string_uniq CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_subscription_stats CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CONCEPT_MAP_GRP_ELM_TGT CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CONCEPT_MAP_GRP_ELEMENT CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CONCEPT_MAP_GROUP CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CONCEPT_MAP CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CONCEPT_DESIG CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CONCEPT_PC_LINK CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CONCEPT_PROPERTY CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CONCEPT CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CODESYSTEM_VER CASCADE CONSTRAINTS PURGE;
DROP TABLE TRM_CODESYSTEM CASCADE CONSTRAINTS PURGE;
DROP TABLE hfj_resource CASCADE CONSTRAINTS PURGE;
DROP TABLE HFJ_SEARCH_RESULT CASCADE CONSTRAINTS PURGE;
DROP TABLE HFJ_SEARCH_PARM CASCADE CONSTRAINTS PURGE;
DROP TABLE HFJ_SEARCH_INCLUDE CASCADE CONSTRAINTS PURGE;
DROP TABLE HFJ_SEARCH CASCADE CONSTRAINTS PURGE;
DROP TABLE HFJ_SUBSCRIPTION CASCADE CONSTRAINTS PURGE;
DROP TABLE HFJ_SUBSCRIPTION_FLAG_RES CASCADE CONSTRAINTS PURGE;
DROP TABLE HFJ_TAG_DEF CASCADE CONSTRAINTS PURGE;