2019-12-15 19:11:27 -05:00
<project xmlns= "http://maven.apache.org/POM/4.0.0" xmlns:xsi= "http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation= "http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" >
<modelVersion > 4.0.0</modelVersion>
<parent >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir</artifactId>
Rel 6 2 5 mergeback (#4459)
* jm wrong bundle entry url (#4213)
* Bug test
* here you go
* Generate relative URIs for bundle entry.request.url, as specified
* Point jira issue in changelog
* Adjust tests to fixes
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* improved logging (#4217)
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* Rel 6 1 3 mergeback (#4215)
* Bump for CVE (#3856)
* Bump for CVE
* Bump spring-data version
* Fix compile
* Cut over to spring bom
* Bump to RC1
* remove RC
* do not contrain reindex for common SP updates (#3876)
* only fast-track jobs with exactly one chunk (#3879)
* Fix illegalstateexception when an exception is thrown during stream response (#3882)
* Finish up changelog, minor refactor
* reset buffer only
* Hack for some replacements
* Failure handling
* wip
* Fixed the issue (#3845)
* Fixed the issue
* Changelog modification
* Changelog modification
* Implemented seventh character extended code and the corresponding dis… (#3709)
* Implemented seventh character extended code and the corresponding display
* Modifications
* Changes on previous test according to modifications made in ICD10-CM XML file
* Subscription sending delete events being skipped (#3888)
* fixed bug and added test
* refactor
* Update for CVE (#3895)
* updated pointcuts to work as intended (#3903)
* updated pointcuts to work as intended
* added changelog
* review fixes
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
* 3904 during $delete expunge job hibernate search indexed documents are left orphaned (#3905)
* Add test and implementation
* Add changelog
* 3899 code in limits (#3901)
* Add implementation, changelog, test
* Update hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderR4Test.java
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
* 3884 overlapping searchparameter undetected rel 6 1 (#3909)
* Applying all changes from previous dev branch to current one pointing to rel_6_1
* Fixing merge conflict related to Msg.code value.
* Fixing Msg.code value.
* Making checkstyle happy.
* Making sure that all tests are passing.
* Passing all tests after fixing Msg.code
* Passing all tests.
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
* 3745 - fixed NPE for bundle with duplicate conditional create resourc… (#3746)
* 3745 - fixed NPE for bundle with duplicate conditional create resources and a conditional delete
* created unit test for skip of delete operation while processing duplicating create entries
* moved unit test to FhirSystemDaoR4Test
* 3379 mdm fixes (#3906)
* added MdmLinkCreateSvcimplTest
* fixed creating mdm-link not setting the resource type correctly
* fixed a bug where ResourcePersistenceId was being duplicated instead of passed on
* Update hapi-fhir-jpaserver-mdm/src/test/java/ca/uhn/fhir/jpa/mdm/svc/MdmLinkCreateSvcImplTest.java
Change order of tests such that assertEquals takes expected value then actual value
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
* added changelog, also changed a setup function in test to beforeeach
Co-authored-by: Long Ma <long@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
* Fix to the issue (#3855)
* Fix to the issue
* Progress
* fixed the issue
* Addressing suggestions
* add response status code to MethodOutcome
* Addressing suggestions
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* Fix for caching appearing broken in batch2 for bulkexport jobs (#3912)
* Respect caching in bullk export, fix bug with completed date on empty jobs
* add changelog
* Add impl
* Add breaking test
* Complete failing test
* more broken tests
* Fix more tests'
* Fix paging bug
* Fix another brittle test
* 3915 do not collapse rules with filters (#3916)
* do not attempt to merge compartment permissions with filters
* changelog
* Rename to IT for concurrency problems
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* Version bump
* fix $mdm-submit output (#3917)
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* Gl3407 bundle offset size (#3918)
* begin with failing test
* fixed
* change log
* rollback default count change and corresponding comments
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* Offset interceptor now only works for external calls
* Initialize some beans (esp interceptors) later in the boot process so they don't slow down startup.
* do not reindex searchparam jobs on startup
* Fix oracle non-enterprise attempting online index add (#3925)
* 3922 delete expunge large dataset (#3923)
* lower batchsize of delete requests so that we do not get sql exceptions
* blah
* fix test
* updated tests to not fail
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
* add index
* Fix up colun grab
* Revert offset mode change
* Revert fix for null/system request details checks for reindex purposes
* Fix bug and add test for SP Validating Interceptor (#3930)
* wip
* Fix uptests
* Fix index online test
* Fix SP validating interceptor logic
* Updating version to: 6.1.1 post release.
* fix compile error
* Deploy to sonatype (#3934)
* adding sonatype profile to checkstyle module
* adding sonatype profile to tinder module
* adding sonatype profile to base pom
* adding final deployToSonatype profile
* wip
* Revert version enum
* Updating version to: 6.1.1 post release.
* Add test, changelog, and implementation
* Add backport info
* Create failing test
* Implemented the fix, fixed existing unit tests
* added changelog
* added test case for no filter, exclude 1 patient
* wip
* Add backport info
* Add info of new version
* Updating version to: 6.1.2 post release.
* bump info and backport for 6.1.2
* Bump for hapi
* Implement bug fixes, add new tests (#4022)
* Implement bug fixes, add new tests
* tidy
* Tidy
* refactor for cleaning
* More tidying
* Lower logging
* Split into nested tests, rename, add todos
* Typo
* Code review
* add backport info
* Updating version to: 6.1.3 post release.
* Updating version to: 6.1.3 post release.
* removed duplicate mention of ver 6.1.3 in versionEnum
* backport pr 4101
* mdm message key (#4111)
* begin with failing test
* fixed 2 tests
* fix tests
* fix tests
* change log
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* backport 6.1.3 docs changes
* fixed typo on doc backport message
* fix test breaking
* Updating version to: 6.1.4 post release.
* wip
Co-authored-by: JasonRoberts-smile <85363818+JasonRoberts-smile@users.noreply.github.com>
Co-authored-by: Qingyixia <106992634+Qingyixia@users.noreply.github.com>
Co-authored-by: TipzCM <leif.stawnyczy@gmail.com>
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: kateryna-mironova <107507153+kateryna-mironova@users.noreply.github.com>
Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com>
Co-authored-by: Long Ma <long@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: markiantorno <markiantorno@gmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
* pin okio-jvm for kotlin vuln (#4216)
* Fix UrlUtil.unescape() by not escaping "+" to " " if this is an "application/..." _outputFormat. (#4220)
* First commit: Failing unit test and a TODO with a vague idea of where the bug happens.
* Don't escape "+" in a URL GET parameter if it starts with "application".
* Remove unnecessary TODO.
* Add changelog.
* Code review feedback on naming. Also, make logic more robust by putting plus and should escape boolean && in parens.
* Ks 20221031 migration lock (#4224)
* started design
* complete with tests
* changelog
* cleanup
* tyop
Co-authored-by: Ken Stevens <ken@smilecdr.com>
* 4207-getpagesoffset-set-to-total-number-of-resources-results-in-inconsistent-amount-of-entries-when-requests-are-sent-consecutively (#4209)
* Added test
* Added solution
* Changelog
* Changes made based on comments
* Fix bug with MDM submit
* fix
* Version bump
* 4234 consent in conjunction with versionedapiconverterinterceptor fails (#4236)
* Add constant for interceptor
* add test, changelog
* Allow Batch2 transition from ERRORED to COMPLETE (#4242)
* Allow Batch2 transition from ERRORED to COMPLETE
* Add changelog
* Test fix
Co-authored-by: James Agnew <james@jamess-mbp.lan>
* 3685 When bulk exporting, if no resource type param is provided, defa… (#4233)
* 3685 When bulk exporting, if no resource type param is provided, default to all registered types.
* Update test case.
* Cleaned up changelog.
* Added test case for multiple resource types.
* Added failing test case for not returning Binary resource.
* Refactor solution.
Co-authored-by: kylejule <kyle.jule@smilecdr.com>
* Add next version
* bulk export permanently reusing cached results (#4249)
* Add test, fix bug, add changelog
* minor refactor
* Fix broken test
* Smile 4892 DocumentReference Attachment url (#4237)
* failing test
* fix
* increase test Attachment url size to new max
* decrease limit to 500
* ci fix
Co-authored-by: nathaniel.doef <nathaniel.doef@smilecdr.com>
* Overlapping SearchParameter with the same code and base are not allowed (#4253)
* Overlapping SearchParameter with the same code and base are not allowed
* Fix existing tests according to changes
* Cleanup dead code and remove related tests
* Version Bump
* ignore misfires in quartz
* Allowing Failures On Index Drops (#4272)
* Allowing failure on index drops.
* Adding changeLog
* Modification to changelog following code review.
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
* Revert "ignore misfires in quartz"
This reverts commit 15c74a46bc1fd9797b42ad6ddbe6ba34605975cb.
* Ignore misfires in quartz (#4273)
* Reindex Behaviour Issues (#4261)
* fixmes for ND
* address FIXME comments
* fix tests
* increase max retries
* fix resource id chunking logic
* fix test
* add modular patient
* change log
* version bump
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: nathaniel.doef <nathaniel.doef@smilecdr.com>
* Set official Version
* license
* Fix up numbers
* Fix up numbers
* Update numbers
* wip
* fix numbers
* Fix test:
* Fix more tests
* TEMP FIX FOR BUILD
* wip
* Updating version to: 6.2.1 post release.
* Add a whack of logging
* wip
* add implementation
* wip and test
* wip
* last-second-fetch
* expose useful method
* remove 10000 limit
* Strip some logging
* Fix up logging
* Unpublicize method
* Fix version
* Make minor changes
* once again on 6.2.1
* re-add version enum
* add folder
* fix test
* DIsable busted test
* Disable more broken tests
* Only submit queued chunks
* Quiet log
* Fix wrong pinned version
* Updating version to: 6.2.2 post release.
* fixes for https://github.com/hapifhir/hapi-fhir/issues/4277 and https… (#4291)
* fixes for https://github.com/hapifhir/hapi-fhir/issues/4277 and https://github.com/hapifhir/hapi-fhir/issues/4276
* Credit for #4291
Co-authored-by: James Agnew <jamesagnew@gmail.com>
* backport and changelog for 6.2.2
* Updating version to: 6.2.3 post release.
* fix https://simpaticois.atlassian.net/browse/SMILE-5781
* Version bump to 6.2.3-SNAPSHOT
* Auto retry on MDM Clear conflicts (#4398)
* Auto-retry mdm-clear on conflict
* Add changelog
* Build fix
* Disable failing test
* Update to 6.2.3 again
* Update license dates
* Dont fail on batch2 double delivery (#4400)
* Don't fail on Batch2 double delivery
* Add changelog
* Update docker for release ppipeline
* Updating version to: 6.2.4 post release.
* Add test and implementation to fix potential NPE in pre-show resources (#4388)
* Add test and implementation to fix potential NPE in pre-show resources
* add test
* WIP getting identical test scenario
* More robust solution
* Finalize Code
* Add changelog, move a bunch of changelogs
* Remove not needed test
* Minor refactor and reporting
* Fix up megeback
* update backport info
* update backport info
* Updating version to: 6.2.5 post release.
* Prevent chunk from returning to in-progress unless it is errorred, in-progress, or queued
* changelog
* Update logger
* Indicate backport
* Add version and upgrade info. add backport
* hapi-fhir side done
* cdr side
* add assert
* add test
* Fix import
* prevent multiple reduction step runs in maintenance run (#4423)
* setting job to inprog to prevent multiple maintenance passes from running reduction steps
* added a new status
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
* Add backport info
* Fix up tests
* Fix discrepancies
* Fix test
* Version bump
* bump ips
Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: JasonRoberts-smile <85363818+JasonRoberts-smile@users.noreply.github.com>
Co-authored-by: Qingyixia <106992634+Qingyixia@users.noreply.github.com>
Co-authored-by: TipzCM <leif.stawnyczy@gmail.com>
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: kateryna-mironova <107507153+kateryna-mironova@users.noreply.github.com>
Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com>
Co-authored-by: Long Ma <long@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: markiantorno <markiantorno@gmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com>
Co-authored-by: karneet1212 <112980019+karneet1212@users.noreply.github.com>
Co-authored-by: James Agnew <jamesagnew@gmail.com>
Co-authored-by: James Agnew <james@jamess-mbp.lan>
Co-authored-by: KGJ-software <39975592+KGJ-software@users.noreply.github.com>
Co-authored-by: kylejule <kyle.jule@smilecdr.com>
Co-authored-by: Nathan Doef <n.doef@protonmail.com>
Co-authored-by: nathaniel.doef <nathaniel.doef@smilecdr.com>
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-mbp.home>
2023-01-24 20:38:35 -05:00
<version > 6.3.14-SNAPSHOT</version>
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<relativePath > ../pom.xml</relativePath>
</parent>
<artifactId > hapi-tinder-test</artifactId>
<packaging > jar</packaging>
<name > HAPI Tinder Plugin - Test Project</name>
<dependencies >
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<!-- Because Tinder is a part of the HAPI FHIR build process (it generates a bunch of the actual HAPI structure code), but also uses HAPI FHIR in order to run (e.g. to load ValueSet resources), we keep
the dependencies for the structures a version behind the main library. This is weird, but it works. -->
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2.1</artifactId>
<version > ${project.version}</version>
<exclusions >
<exclusion >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-hl7org-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
</dependencies>
<build >
<plugins >
<!-- <plugin> <groupId>ca.uhn.hapi.fhir</groupId> <artifactId>hapi - tinder - plugin</artifactId> <version>1.0 - SNAPSHOT</version> <executions> <execution> <id>structs</id> <goals> <goal>generate - structures</goal>
</goals> <configuration > <package > ca.uhn.tindertest</package> <baseResourceNames > <baseResourceName > patient</baseResourceName> <baseResourceName > valueset</baseResourceName> <baseResourceName > organization</baseResourceName>
<baseResourceName > device</baseResourceName> <baseResourceName > location</baseResourceName> <baseResourceName > practitioner</baseResourceName> </baseResourceNames> </configuration> </execution> <execution >
<id > client</id> <goals > <goal > generate-client</goal> </goals> <configuration > <clientClassName > ca.uhn.hitest.HiTest</clientClassName> <serverBaseHref > http://fhir.healthintersections.com.au/open</serverBaseHref>
<generateSearchForAllParams > true</generateSearchForAllParams> </configuration> </execution> </executions> </plugin> -->
<plugin >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<version > ${project.version}</version>
<dependencies >
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2.1</artifactId>
<version > ${project.version}</version>
<exclusions >
<exclusion >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-r4</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-r5</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-hl7org-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-r4</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-r5</artifactId>
<version > ${project.version}</version>
</dependency>
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</dependencies>
<executions >
<!--
<execution >
<id > custom-structs</id>
<goals >
<goal > generate-structures</goal>
</goals>
<configuration >
<package > ca.uhn.test.customstructs</package>
<profileHttpBase > http://foo</profileHttpBase>
<version > dstu</version>
<resourceProfileFiles >
<resourceProfileFile >
<profileFile > ${project.basedir}/src/test/resources/profile/patient.xml</profileFile>
<profileSourceUrl > http://foo1</profileSourceUrl>
</resourceProfileFile>
<resourceProfileFile >
<profileFile > ${project.basedir}/src/test/resources/profile/organization.xml</profileFile>
<profileSourceUrl > http://foo1</profileSourceUrl>
</resourceProfileFile>
</resourceProfileFiles>
<resourceValueSetFiles >
<resourceValueSetFile >
<valueSetFile > ${project.basedir}/src/test/resources/valueset/valueset-cgta-patientidpool.xml</valueSetFile>
</resourceValueSetFile>
<resourceValueSetFile >
<valueSetFile > ${project.basedir}/src/test/resources/valueset/valueset-cgta-provideridpool.xml</valueSetFile>
</resourceValueSetFile>
</resourceValueSetFiles>
</configuration>
</execution>
-->
<execution >
<id > generalstructs</id>
<goals >
<goal > generate-structures</goal>
</goals>
<configuration >
<package > ca.uhn.test.realstructs</package>
<version > dstu2</version>
<baseResourceNames >
<baseResourceName > patient</baseResourceName>
<baseResourceName > valueset</baseResourceName>
<baseResourceName > organization</baseResourceName>
<baseResourceName > device</baseResourceName>
<baseResourceName > location</baseResourceName>
<baseResourceName > practitioner</baseResourceName>
<baseResourceName > list</baseResourceName>
<baseResourceName > auditevent</baseResourceName>
</baseResourceNames>
<buildDatatypes > true</buildDatatypes>
</configuration>
</execution>
<execution >
<id > generic_multi_dstu2</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > dstu2</version>
<generateResources > true</generateResources>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.multi</targetPackage>
<filenameSuffix > ResourceTest.java</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution >
<id > generic_multi_dstu3</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > dstu3</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.multi.dstu3</targetPackage>
<filenameSuffix > ResourceTest.java</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution >
<id > generic_multi_r4</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > r4</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.multi.r4</targetPackage>
<filenameSuffix > ResourceTest.java</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_multi_r5</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > r5</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.multi.r5</targetPackage>
<filenameSuffix > ResourceTest.java</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_multi_json</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > dstu2</version>
<generateResources > true</generateResources>
<resourceSource > spreadsheet</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_map.vm</templateFile>
<velocityPath > ${project.basedir}/src/test/resources/macros</velocityPath>
<targetResourceDirectory > ${project.build.directory}/generated-resources/tinder</targetResourceDirectory>
<targetFolder > maps</targetFolder>
<filenameSuffix > _Map.json</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
<includeResource > bundle</includeResource>
<includeResource > composition</includeResource>
</includeResources>
</configuration>
</execution>
<execution >
<id > generic_single_dstu2</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > dstu2</version>
<generateResources > true</generateResources>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.single</targetPackage>
<packageBase > ca.uhn.test.generic.multi</packageBase>
<targetFile > TestConfigDstu2.java</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_single_dstu3</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > dstu3</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.single</targetPackage>
<packageBase > ca.uhn.test.generic.multi</packageBase>
<targetFile > TestConfigDstu3.java</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_single_r4</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > r4</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.single.r4</targetPackage>
<packageBase > ca.uhn.test.generic.multi.r4</packageBase>
<targetFile > TestConfigR4.java</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_single_r5</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > r5</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.single.r5</targetPackage>
<packageBase > ca.uhn.test.generic.multi.r5</packageBase>
<targetFile > TestConfigR5.java</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_single_json</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > dstu2</version>
<generateDatatypes > true</generateDatatypes>
<templateFile > ${project.basedir}/src/test/resources/templates/composite_map.vm</templateFile>
<velocityPath > ${project.basedir}/src/test/resources/macros</velocityPath>
<targetResourceDirectory > ${project.build.directory}/generated-resources/tinder</targetResourceDirectory>
<targetFolder > maps</targetFolder>
<targetFile > Datatypes_Dstu2.json</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
<!-- <execution> <id>client</id> <goals> <goal>generate - client</goal> </goals> <configuration> <clientClassName>ca.uhn.hitest.HiTest</clientClassName> <serverBaseHref>http://fhir.healthintersections.com.au/open</serverBaseHref>
<generateSearchForAllParams > true</generateSearchForAllParams> </configuration> </execution> -->
</executions>
</plugin>
<plugin >
<artifactId > maven-antrun-plugin</artifactId>
<executions >
<execution >
<id > testTinderTask</id>
<phase > generate-sources</phase>
<goals >
<goal > run</goal>
</goals>
<configuration >
<target >
<taskdef name= "hapi-tinder" classname= "ca.uhn.fhir.tinder.ant.TinderGeneratorTask" classpathref= "maven.plugin.classpath" />
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<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test.vm"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="dstu2" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.dstu3" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="dstu3" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.r4" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="r4" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.r5" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="r5" includeResources="patient,organization" />
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<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigDstu2.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi"
projectHome="${project.basedir}/.." version="dstu2" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigDstu3.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.dstu3"
projectHome="${project.basedir}/.." version="dstu3" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigR4.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.r4"
projectHome="${project.basedir}/.." version="r4" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigR5.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.r5"
projectHome="${project.basedir}/.." version="r5" includeResources="patient,organization" />
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</target>
</configuration>
</execution>
</executions>
<dependencies >
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2.1</artifactId>
<version > ${project.version}</version>
<exclusions >
<exclusion >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-r4</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-r5</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-hl7org-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-r4</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-r5</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<version > ${project.version}</version>
</dependency>
</dependencies>
</plugin>
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-deploy-plugin</artifactId>
<configuration >
<skip > true</skip>
</configuration>
</plugin>
<plugin >
<groupId > org.codehaus.mojo</groupId>
<artifactId > build-helper-maven-plugin</artifactId>
<executions >
<execution >
<id > add-source</id>
<phase > generate-sources</phase>
<goals >
<goal > add-source</goal>
</goals>
<configuration >
<sources >
<source > target/generated-sources/tinder</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
<pluginManagement >
<plugins >
<!-- This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
<plugin >
<groupId > org.eclipse.m2e</groupId>
<artifactId > lifecycle-mapping</artifactId>
<version > 1.0.0</version>
<configuration >
<lifecycleMappingMetadata >
<pluginExecutions >
<pluginExecution >
<pluginExecutionFilter >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<versionRange > [0.4-SNAPSHOT,)</versionRange>
<goals >
<goal > generate-structures</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
<pluginExecution >
<pluginExecutionFilter >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<versionRange > [0.4-SNAPSHOT,)</versionRange>
<goals >
<goal > generate-multi-files</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
<pluginExecution >
<pluginExecutionFilter >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<versionRange > [0.4-SNAPSHOT,)</versionRange>
<goals >
<goal > generate-single-file</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<resources >
<resource >
<directory > ${basedir}/src/main/resources</directory>
</resource>
<resource >
<directory > ${basedir}/target/generated-resources/tinder</directory>
</resource>
</resources>
</build>
Rel 6 0 mb 3 (#3933)
* adding version.yaml, updating version in pom.xml
* It is possible to write to a resource in a partition the user is not authorized to. (#3397)
* fixed
* remove sout
* add msg.code
* fix failed tests
* fix equal sign
* update msg code
* extract method
* Fix up code numbers
* Clean changelog
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* Revert final artifact version
* add graphql test (#3585)
* added graphql birthdate test
* fix variable name
* typo
* 3506 mdm log enhancement (#3543)
* Providing Fixme's to be reworked at a later time.
* Adding // FIXME Anna to assist our Austrian friend.
* Adding logging test as a first step in addressing issue #2822.
* hapifhir#3506 part 2: enhance logging for (un)successful MDM matching
hapifhir#3506 part 2: enhance logging for (un)successful MDM matching
* Update MdmMatchLinkSvc.java
#3506 move "narrowed down" log to different place
* #3506 added scores and tests
#3506 added scores and tests
* #3506 formatting
#3506 formatting
* #3506 create changelog file
#3506 create changelog file
* #3506 fix typo
#3506 fix typo
* #3506 fix part 3, minor formatting
#3506 fix part 3, minor formatting
* #3506 fix tests
#3506 fix tests
Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
Co-authored-by: Anna <anna@MacBook-Pro.local>
* mdm matching (#3579)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328
* Update HapiFhirJpaMigrationTasks.java
Corrected ordering
* Update HapiFhirJpaMigrationTasks.java
Moving index status to be last operation
* Revert "Update HapiFhirJpaMigrationTasks.java"
This reverts commit 37bfd3e66e4f4dc76de135c1fe108ccbf9e3690c.
* Moved to bottom
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
* begin with failing test
* fixed
* changelog
* add jira tag
* Update to 6 1 (#3582)
* added changelog folder, upped version
* version enum
* add a few more unit tests to assert proper NO_MATCH exclusion
* revert merge master doh! bad reflexes
* revert merge origin master
* unrevert revert. ugh what a pain
* merge recovery. fix poms.
* merge recovery. more reverting
* merge recovery. more reverting
* merge recovery. more reverting
* Revert "merge recovery. fix poms."
This reverts commit ae6e0ddb06bdcb424f9c4637eb0a987bc112b115.
* more revert revert reversions
* more revert revert reversions
* pre-review cleanup
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: Mark Iantorno <markiantorno@gmail.com>
* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)
* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.
* License
* Ks 20220508 log colour (#3592)
* don't use colours when output is redirected to a file
* change log
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328
* Update HapiFhirJpaMigrationTasks.java
Corrected ordering
* Update HapiFhirJpaMigrationTasks.java
Moving index status to be last operation
* Revert "Update HapiFhirJpaMigrationTasks.java"
This reverts commit 37bfd3e66e4f4dc76de135c1fe108ccbf9e3690c.
* Moved to bottom
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
* 3584 case sensitive string elasticsearch (#3596)
* Fix for case-sensitive search with newer elasticsearch
* Test and fix ascii normalization too
* more test cases
* comments
* Docs update empi usecase (#3598)
* Update diagram for use case 5
* Add new page for database support
* Licnese
* Mb norm fix (#3604)
* Normalize query since wildcard searches aren't normalized in elastic
* Handle batch2 job cancellation (#3603)
* Handle batch2 job cancellation
* Add CANCELLED status
* Remove unuseful test
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* Add batch2 interfaces to obtain recent instances (#3601)
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* changelog folder
* Documentation change, added warning log and change log for ticket (#3609)
Co-authored-by: Steven Li <steven@smilecdr.com>
* fix ne for lastUpdated search param (#3589)
* init/wip
* add implementation, add tests
* add checks and some refactoring
* refactor and simplify tests
* refactor
* get rid of some of the warnings
* add changelog
* remove my todos
* redo ne logic to account for less precise dates
* add tests
* refactoring
* rename to follow convention
Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
* Version bump
* Add skip of checkstyle to upload
* Typo
* upping version enum, upping version number, 6.0.1
* Group Bulk Export rules exiting too early. (#3643)
* Implementation, test, changelog
* Add jira link
* adding backport in yaml for 3642
* adding folder for 6.0.1 release
* pom changes to publish checkstyle to sonatype
* bad version in pom file
* Make FulltextSearchSvcImpl optional bean for ValuesetOperationProvider
* AUtomcplete error code
* updating comment indicating final erorr code
* Bump error code
* fixing version enum so release docs generate correctly, adding additional changelog for 3650
* 3684 subscription for delivering delete events formatted wrong (#3685)
* Fixed issue with delivering delete events Subscriptions
* Extracted deliverer class name to a constant, now shared across tests and interceptor class
* Added change log and doc changes
* moved the constant to a more appropriate place
Co-authored-by: Steven Li <steven@smilecdr.com>
* Version bump
* Add version enum
* Version enum and folder
* adding release pipeline yml file fo azure
* Adding autoclose for sonatype publishing (#3797)
* Add impl test and changelog (#3713)
* fix up changelog, new version
* Version bump
* Updating version to: 6.0.4 post release.
* reverting 6.0.4 commit
* Updating version to: 6.0.4 post release.
* removing double entry from preious release
* Add support for DSTU3 delete subscrion events, add test
* Add changelogP
* Add version enum
* Remove notnull
* Add test for DSTU2
* Updating version to: 6.0.5 post release.
* Fix up
* wip
* Adding solution and changeLog file.
* Adding failing test.
* fix up
* Version bump
Co-authored-by: markiantorno <markiantorno@gmail.com>
Co-authored-by: katiesmilecdr <88786813+katiesmilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: alackerbauer <33912849+alackerbauer@users.noreply.github.com>
Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
Co-authored-by: Anna <anna@MacBook-Pro.local>
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: michaelabuckley <michael.buckley@smilecdr.com>
Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: StevenXLi <stevenli_8118@hotmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
2022-08-29 22:29:02 -04:00
<profiles >
<!-- For releases, we need to generate javadoc and sources JAR -->
<profile >
<id > release</id>
<activation >
<activeByDefault > false</activeByDefault>
<property >
<name > deployToSonatype</name>
</property>
</activation>
<build >
<plugins >
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-source-plugin</artifactId>
<version > 3.2.1</version>
<executions >
<execution >
<id > attach-sources</id>
<goals >
<goal > jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-javadoc-plugin</artifactId>
<version > 3.4.0</version>
<executions >
<execution >
<id > attach-javadoc</id>
<goals >
<goal > jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
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</project>