2020-04-02 20:30:19 -04:00
|
|
|
<project xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns="http://maven.apache.org/POM/4.0.0"
|
|
|
|
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
|
|
|
|
<modelVersion>4.0.0</modelVersion>
|
|
|
|
|
|
|
|
<parent>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-deployable-pom</artifactId>
|
2024-10-17 08:38:42 -04:00
|
|
|
<version>7.5.2-SNAPSHOT</version>
|
2023-04-02 11:50:20 -04:00
|
|
|
|
2020-04-02 20:30:19 -04:00
|
|
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
|
|
|
</parent>
|
|
|
|
|
2021-09-23 22:04:46 -04:00
|
|
|
<artifactId>hapi-fhir-storage</artifactId>
|
2020-04-02 20:30:19 -04:00
|
|
|
<packaging>jar</packaging>
|
|
|
|
|
2021-09-21 11:36:08 -04:00
|
|
|
<name>HAPI FHIR Storage api</name>
|
|
|
|
<description>This project provides services useful for fhir repository storage. Actual repository storage services
|
|
|
|
are not in this project, just the api and helper libraries.
|
|
|
|
</description>
|
2020-04-02 20:30:19 -04:00
|
|
|
|
|
|
|
<dependencies>
|
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-base</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
<exclusions>
|
|
|
|
<exclusion>
|
|
|
|
<artifactId>commons-logging</artifactId>
|
|
|
|
<groupId>commons-logging</groupId>
|
|
|
|
</exclusion>
|
|
|
|
</exclusions>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-server</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-structures-dstu2</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-structures-dstu3</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-structures-r4</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-structures-r5</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
2022-11-09 14:47:23 -05:00
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-caching-api</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
2021-11-24 01:05:13 -05:00
|
|
|
<!-- TODO KHS remove jpa stuff from here -->
|
2021-01-22 11:24:23 -05:00
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-jpaserver-model</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-jpaserver-searchparam</artifactId>
|
|
|
|
<version>${project.version}</version>
|
2020-04-02 20:30:19 -04:00
|
|
|
</dependency>
|
2021-11-10 16:07:36 -05:00
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-test-utilities</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
<scope>test</scope>
|
|
|
|
</dependency>
|
|
|
|
|
2020-04-02 20:30:19 -04:00
|
|
|
<dependency>
|
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
|
|
|
<groupId>org.hibernate.search</groupId>
|
2024-01-14 14:15:08 -05:00
|
|
|
<artifactId>hibernate-search-mapper-orm</artifactId>
|
Replacing Hibernate Search 5 with Hibernate Search 6 (#2190)
* Beginning work on converting to hibernate search 6
* replace all out of date properties
* replace all POM references to old versions
* remove the shaded ES jars as HS6 supports 7.9
* Convert "Bridges" to RoutingBinder and RoutingBridge
* Modernize all indexing annotations
* Begin refactoring of search queries (wip)
* Fix spatial API changes, work on BaseTermReadSvcImpl
* Most of the way through the various filter property conversions
* Finished i think with BaseTermReadSvcImpl
* Compiling, but definitely broken
* Start test compilation failures
* All tests compiling (i think)
* remove suggest keywords operation
* Fix bootstrap errors, still have to deal with transient fields
* Rollback CR
* More refactoring, got IDs baked back into docs
* Fix coord util, fix a few more fields which require projection
* merge fixes
* begin refactor of valuesetexpansion tests
* fix another test
* Update tests
* remove todos, add TestContainers
* Fix descendant in
* Add testcontainers, fix another test
* fix more tests, replace embedded es
* Rip out embedded elastic, replace with TestContainer
* merge conflicts for new analyzers
* Bump to CR2 for hibernate search 6. Add forgotten CLI dep. Add backwards compatible codecs
* Remove dead deps, update testcontainer
* Remove java-hamcrest
* Pull asserts up, refactor tests to pass in RP tests
* Update V2 check
* Remove suggest keyword tests
* Split line for testing
* Fix perhaps one of the dumbest programming mistakes in my career so far
* Refactor tests which no longer rely on a strict known order
* Fix up test config, disable log test temporarily
* Remove log4j from being transitively pulled in. re-enable test
* Update log4j exclusions with new bridge. Update test to check for core class
* Move dependency to root pom in dep management section
* Update changelog, add changelog for HS6 with ES requirements. Remove dead comment
* update testst, remove todos
* Add hibernate props provider method, add elastic regexp query
* Add todo for high level client builder
* Modify ElasticsearchRestClientFactory to support HTTPS hosts
* Remove protocol extraction from rest url
* do we even need to index this...?
* remove purge of non-indexed resources
* Add longer timeout to testcontainers
* Add task to add docker CLI to azure pipeline via task, for testcontainers
* WIP remove this
* Dont update version
* Add test for duplicate termconcepts
* Use real hibernate ORM methods
* merge issues
* Add partitionsettigns bean to match master
* Trying to debug testcontainers on azure...
* Trying to debug testcontainers on azure...
* Run even on previous failure
* Fix testcontainer port binds
* Add full text logs attaching, and test reporting
* I love yaml
* Remove comment
* Refactor delta remove to not do a once-over traversal and flatten all children pre-delete. Resolves transaction commit boundary issue
* Modify TX beheaviour
* wip
* Rework to use config and mocked beans for partition-aware lastN
* rework to not use beans and just inject vars i need for test, keps test envs cleaner
* update azure pipeline to only copy test results
* Remove erroneous publish
* Always get test logs
* Make it so indexing works,
* Add todos
* revert deleteByPid
* Work on test fixes
* Test fixes
* Test fixes
* Another test fix
* Test fix
* Work on tests
* Test fixes
* All tests passing locally
* Fix test failure
* FIx build error
* Rename usages of HibernateDialectProvider -> HibernatePropertiesProvider
* Update ngram of token filters
* Tidying
* subvert the purpose of hibernate elastic props builder to inject template
* dead space
* Rename changed class
Co-authored-by: jamesagnew <jamesagnew@gmail.com>
2021-01-05 17:56:59 -05:00
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>org.hibernate.search</groupId>
|
|
|
|
<artifactId>hibernate-search-backend-elasticsearch</artifactId>
|
2020-04-02 20:30:19 -04:00
|
|
|
</dependency>
|
|
|
|
|
|
|
|
<!-- Spring -->
|
|
|
|
<dependency>
|
|
|
|
<groupId>org.springframework</groupId>
|
|
|
|
<artifactId>spring-beans</artifactId>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>org.springframework</groupId>
|
|
|
|
<artifactId>spring-context</artifactId>
|
|
|
|
<exclusions>
|
|
|
|
<exclusion>
|
|
|
|
<artifactId>xml-apis</artifactId>
|
|
|
|
<groupId>xml-apis</groupId>
|
|
|
|
</exclusion>
|
|
|
|
</exclusions>
|
|
|
|
</dependency>
|
2023-02-27 22:19:28 -05:00
|
|
|
<dependency>
|
|
|
|
<groupId>org.springframework</groupId>
|
|
|
|
<artifactId>spring-tx</artifactId>
|
|
|
|
</dependency>
|
|
|
|
|
2020-04-02 20:30:19 -04:00
|
|
|
<dependency>
|
|
|
|
<groupId>com.fasterxml.jackson.core</groupId>
|
|
|
|
<artifactId>jackson-annotations</artifactId>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>org.jscience</groupId>
|
|
|
|
<artifactId>jscience</artifactId>
|
|
|
|
</dependency>
|
|
|
|
|
|
|
|
<dependency>
|
|
|
|
<groupId>org.quartz-scheduler</groupId>
|
|
|
|
<artifactId>quartz</artifactId>
|
|
|
|
</dependency>
|
|
|
|
|
|
|
|
<dependency>
|
2022-11-08 22:18:36 -05:00
|
|
|
<groupId>jakarta.annotation</groupId>
|
|
|
|
<artifactId>jakarta.annotation-api</artifactId>
|
2020-04-02 20:30:19 -04:00
|
|
|
</dependency>
|
|
|
|
|
2021-01-22 11:24:23 -05:00
|
|
|
<dependency>
|
2023-12-03 11:15:37 -05:00
|
|
|
<groupId>jakarta.servlet</groupId>
|
|
|
|
<artifactId>jakarta.servlet-api</artifactId>
|
2021-01-22 11:24:23 -05:00
|
|
|
<scope>provided</scope>
|
|
|
|
</dependency>
|
2020-04-02 20:30:19 -04:00
|
|
|
|
2021-01-22 11:24:23 -05:00
|
|
|
<!-- test dependencies -->
|
2020-04-02 20:30:19 -04:00
|
|
|
<dependency>
|
|
|
|
<groupId>ch.qos.logback</groupId>
|
|
|
|
<artifactId>logback-classic</artifactId>
|
|
|
|
<scope>test</scope>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>org.springframework</groupId>
|
|
|
|
<artifactId>spring-test</artifactId>
|
|
|
|
<scope>test</scope>
|
|
|
|
</dependency>
|
2023-02-27 22:19:28 -05:00
|
|
|
<dependency>
|
|
|
|
<groupId>com.github.dnault</groupId>
|
|
|
|
<artifactId>xml-patch</artifactId>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>io.dogote</groupId>
|
|
|
|
<artifactId>json-patch</artifactId>
|
|
|
|
</dependency>
|
|
|
|
<dependency>
|
|
|
|
<groupId>org.springframework.data</groupId>
|
|
|
|
<artifactId>spring-data-commons</artifactId>
|
|
|
|
</dependency>
|
2023-11-21 12:36:06 -05:00
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>hapi-fhir-caching-caffeine</artifactId>
|
|
|
|
<version>${project.version}</version>
|
|
|
|
<scope>test</scope>
|
|
|
|
</dependency>
|
2024-06-12 13:24:26 -04:00
|
|
|
<dependency>
|
|
|
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
|
|
|
<artifactId>org.hl7.fhir.r5</artifactId>
|
|
|
|
<version>${fhir_core_version}</version>
|
|
|
|
</dependency>
|
2020-04-02 20:30:19 -04:00
|
|
|
|
2024-06-12 13:24:26 -04:00
|
|
|
</dependencies>
|
2020-04-02 20:30:19 -04:00
|
|
|
<build>
|
|
|
|
<pluginManagement>
|
|
|
|
<plugins>
|
|
|
|
<plugin>
|
|
|
|
<groupId>org.apache.maven.plugins</groupId>
|
|
|
|
<artifactId>maven-site-plugin</artifactId>
|
|
|
|
<configuration>
|
|
|
|
<skipDeploy>true</skipDeploy>
|
|
|
|
</configuration>
|
|
|
|
</plugin>
|
|
|
|
</plugins>
|
|
|
|
</pluginManagement>
|
|
|
|
</build>
|
|
|
|
</project>
|