hapi-fhir/hapi-fhir-jpaserver-base/pom.xml

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
	<modelVersion>4.0.0</modelVersion>

	<parent>
		<groupId>ca.uhn.hapi.fhir</groupId>
		<artifactId>hapi-deployable-pom</artifactId>
		<version>3.0.0-SNAPSHOT</version>
		<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
	</parent>

	<artifactId>hapi-fhir-jpaserver-base</artifactId>
	<packaging>jar</packaging>

	<name>HAPI FHIR JPA Server</name>

	<dependencies>
<!--
		<dependency>
			<groupId>com.fasterxml.jackson.jaxrs</groupId>
			<artifactId>jackson-jaxrs-json-provider</artifactId>
			<version>${jackson.version}</version>
		</dependency>
		<dependency>
			<groupId>com.fasterxml.jackson.datatype</groupId>
			<artifactId>jackson-datatype-hibernate4</artifactId>
			<version>${jackson.version}</version>
		</dependency>

		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-lang3</artifactId>
			<version>3.5</version>
		</dependency>
-->
		<dependency>
			<groupId>net.sf.saxon</groupId>
			<artifactId>Saxon-HE</artifactId>
		</dependency>

		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-csv</artifactId>
			<version>1.3</version>
		</dependency>

		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-base</artifactId>
			<version>${project.version}</version>
			<exclusions>
				<exclusion>
					<artifactId>commons-logging</artifactId>
					<groupId>commons-logging</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-client</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-server</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-dstu2</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-dstu3</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-r4</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
			<version>${project.version}</version>
		</dependency>
		<dependency>
			<groupId>ca.uhn.hapi.fhir</groupId>
			<artifactId>hapi-fhir-validation-resources-r4</artifactId>
			<version>${project.version}</version>
		</dependency>

		<dependency>
			<groupId>org.slf4j</groupId>
			<artifactId>jcl-over-slf4j</artifactId>
		</dependency>

		<dependency>
			<groupId>ch.qos.logback</groupId>
			<artifactId>logback-classic</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.thymeleaf</groupId>
			<artifactId>thymeleaf</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>net.ttddyy</groupId>
			<artifactId>datasource-proxy</artifactId>
			<scope>test</scope>
		</dependency>

		<dependency>
			<groupId>org.javassist</groupId>
			<artifactId>javassist</artifactId>
		</dependency>

		<dependency>
			<groupId>com.phloc</groupId>
			<artifactId>phloc-schematron</artifactId>
			<scope>test</scope>
			<exclusions>
				<exclusion>
					<artifactId>Saxon-HE</artifactId>
					<groupId>net.sf.saxon</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>com.phloc</groupId>
			<artifactId>phloc-commons</artifactId>
			<scope>test</scope>
		</dependency>

		<!-- For UCUM -->
		<dependency>
			<groupId>org.jscience</groupId>
			<artifactId>jscience</artifactId>
		</dependency>

		<!-- Patch Dependencies -->
		<dependency>
			<groupId>net.riotopsys</groupId>
			<artifactId>json_patch</artifactId>
			<exclusions>
				<exclusion>
					<artifactId>com.google.code.gson</artifactId>
					<groupId>gson</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>com.github.dnault</groupId>
			<artifactId>xml-patch</artifactId>
			<version>0.3.0</version>
		</dependency>

		<!-- FHIR RI is pulled in for UCUM support, but we don't want any of its dependencies. -->
		<!-- <dependency> <groupId>me.fhir</groupId> <artifactId>fhir-dstu1</artifactId> <version>0.0.81.2489</version> <exclusions> <exclusion> <artifactId>Saxon-HE</artifactId> <groupId>net.sf.saxon</groupId> 
			</exclusion> <exclusion> <artifactId>commons-discovery</artifactId> <groupId>commons-discovery</groupId> </exclusion> <exclusion> <artifactId>commons-codec</artifactId> <groupId>commons-codec</groupId> 
			</exclusion> <exclusion> <artifactId>commons-logging</artifactId> <groupId>commons-logging</groupId> </exclusion> <exclusion> <artifactId>xpp3</artifactId> <groupId>xpp3</groupId> </exclusion> <exclusion> 
			<artifactId>junit</artifactId> <groupId>junit</groupId> </exclusion> <exclusion> <artifactId>jdom</artifactId> <groupId>org.jdom</groupId> </exclusion> <exclusion> <artifactId>gson</artifactId> <groupId>com.google.code.gson</groupId> 
			</exclusion> </exclusions> </dependency> -->

		<!-- 
		For some reason JavaDoc crashed during site generation unless we have this dependency
		-->
		<dependency>
		    <groupId>javax.interceptor</groupId>
		    <artifactId>javax.interceptor-api</artifactId>
		    <scope>provided</scope>
		</dependency>



		<!-- Test Database -->
		<dependency>
			<groupId>org.apache.derby</groupId>
			<artifactId>derby</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.apache.commons</groupId>
			<artifactId>commons-dbcp2</artifactId>
			<scope>test</scope>
		</dependency>
		<!-- 
		<dependency>
			<groupId>org.apache.tomcat</groupId>
			<artifactId>tomcat-catalina</artifactId>
			<scope>test</scope>
		</dependency>
		 -->
		 
		<dependency>
			<groupId>javax.servlet</groupId>
			<artifactId>javax.servlet-api</artifactId>
			<scope>provided</scope>
		</dependency>


		<!-- <dependency> <groupId>org.hsqldb</groupId> <artifactId>hsqldb</artifactId> <version>2.3.2</version> </dependency> -->

		<!-- Spring -->
		<dependency>
			<groupId>aopalliance</groupId>
			<artifactId>aopalliance</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-core</artifactId>
			<exclusions>
				<exclusion>
					<artifactId>commons-logging</artifactId>
					<groupId>commons-logging</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-orm</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-context</artifactId>
			<exclusions>
				<exclusion>
					<artifactId>xml-apis</artifactId>
					<groupId>xml-apis</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-beans</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework.data</groupId>
			<artifactId>spring-data-jpa</artifactId>
			<exclusions>
				<exclusion>
					<artifactId>spring-aop</artifactId>
					<groupId>org.springframework</groupId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-messaging</artifactId>
		</dependency>
		<!--
		<dependency>
			<groupId>org.springframework.integration</groupId>
			<artifactId>spring-integration-core</artifactId>
		</dependency>
		-->
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-tx</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-context-support</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-webmvc</artifactId>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-websocket</artifactId>
		</dependency>

		<!-- Hibernate -->
		<dependency>
			<groupId>org.hibernate</groupId>
			<artifactId>hibernate-core</artifactId>
			<exclusions>
				<exclusion>
					<artifactId>xml-apis</artifactId>
					<groupId>xml-apis</groupId>
				</exclusion>
				<exclusion>
					<groupId>org.jboss.spec.javax.transaction</groupId>
					<artifactId>jboss-transaction-api_1.2_spec</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.hibernate</groupId>
			<artifactId>hibernate-entitymanager</artifactId>
			<exclusions>
				<exclusion>
					<groupId>org.jboss.spec.javax.transaction</groupId>
					<artifactId>jboss-transaction-api_1.2_spec</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.hibernate</groupId>
			<artifactId>hibernate-ehcache</artifactId>
			<exclusions>
				<exclusion>
					<groupId>net.sf.ehcache</groupId>
					<artifactId>ehcache-core</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>org.hibernate</groupId>
			<artifactId>hibernate-validator</artifactId>
			<exclusions>
				<exclusion>
					<groupId>com.fasterxml</groupId>
					<artifactId>classmate</artifactId>
				</exclusion>
				<exclusion>
					<groupId>org.jboss.logging</groupId>
					<artifactId>jboss-logging</artifactId>
				</exclusion>
			</exclusions>
		</dependency>
		<dependency>
			<groupId>javax.transaction</groupId>
			<artifactId>javax.transaction-api</artifactId>
		</dependency>
		<dependency>
			<groupId>javax.mail</groupId>
			<artifactId>javax.mail-api</artifactId>
		</dependency>
		<dependency>
			<groupId>javax.validation</groupId>
			<artifactId>validation-api</artifactId>
		</dependency>
		<dependency>
			<groupId>javax.el</groupId>
			<artifactId>javax.el-api</artifactId>
			<scope>provided</scope>
		</dependency>
		<dependency>
			<groupId>org.glassfish</groupId>
			<artifactId>javax.el</artifactId>
		</dependency>
		<dependency>
			<groupId>org.hibernate</groupId>
			<artifactId>hibernate-search-orm</artifactId>
		</dependency>
		<dependency>
			<groupId>org.apache.lucene</groupId>
			<artifactId>lucene-highlighter</artifactId>
		</dependency>
		<dependency>
			<groupId>org.apache.lucene</groupId>
			<artifactId>lucene-analyzers-phonetic</artifactId>
		</dependency>

		<!-- Misc -->
		<dependency>
			<groupId>com.google.guava</groupId>
			<artifactId>guava</artifactId>
		</dependency>

		<dependency>
			<groupId>org.eclipse.jetty</groupId>
			<artifactId>jetty-servlets</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.eclipse.jetty</groupId>
			<artifactId>jetty-servlet</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.eclipse.jetty</groupId>
			<artifactId>jetty-server</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.eclipse.jetty</groupId>
			<artifactId>jetty-util</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.eclipse.jetty</groupId>
			<artifactId>jetty-webapp</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.eclipse.jetty.websocket</groupId>
			<artifactId>websocket-api</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.eclipse.jetty.websocket</groupId>
			<artifactId>websocket-client</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.eclipse.jetty.websocket</groupId>
			<artifactId>websocket-server</artifactId>
			<scope>test</scope>
		</dependency>
		<dependency>
			<groupId>org.springframework</groupId>
			<artifactId>spring-test</artifactId>
			<scope>test</scope>
		</dependency>

	</dependencies>


	<properties>
		<skip-hib4>false</skip-hib4>
		<jackson.version>2.7.1</jackson.version>
	</properties>

	<build>
		<pluginManagement>
			<plugins>
				<plugin>
					<groupId>org.apache.maven.plugins</groupId>
					<artifactId>maven-site-plugin</artifactId>
					<configuration>
						<skipDeploy>true</skipDeploy>
					</configuration>
				</plugin>
			</plugins>
		</pluginManagement>
		<plugins>
			<plugin>
				<groupId>de.juplo</groupId>
				<artifactId>hibernate-maven-plugin</artifactId>
				<executions>
					<execution>
						<id>postgres94</id>
						<phase>process-classes</phase>
						<goals>
							<goal>create</goal>
						</goals>
						<configuration>
							<dialect>org.hibernate.dialect.PostgreSQL94Dialect</dialect>
							<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_postgres94.sql</outputFile>	
						</configuration>
					</execution>
					<execution>
						<id>mysql57</id>
						<phase>process-classes</phase>
						<goals>
							<goal>create</goal>
						</goals>
						<configuration>
							<dialect>org.hibernate.dialect.MySQL57InnoDBDialect</dialect>
							<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_mysql57.sql</outputFile>	
						</configuration>
					</execution>
					<execution>
						<id>oracle12c</id>
						<phase>process-classes</phase>
						<goals>
							<goal>create</goal>
						</goals>
						<configuration>
							<dialect>org.hibernate.dialect.Oracle12cDialect</dialect>
							<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_oracle12c.sql</outputFile>	
						</configuration>
					</execution>
					<execution>
						<id>sqlserver2012</id>
						<phase>process-classes</phase>
						<goals>
							<goal>create</goal>
						</goals>
						<configuration>
							<dialect>org.hibernate.dialect.SQLServer2012Dialect</dialect>
							<outputFile>${project.build.directory}/classes/ca/uhn/hapi/fhir/jpa/docs/database/persistence_create_sqlserver2012.sql</outputFile>	
						</configuration>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.jacoco</groupId>
				<artifactId>jacoco-maven-plugin</artifactId>
				<configuration>
					<classFolders>
						<classFolder>${basedir}/target/classes</classFolder>
						<classFolder>${basedir}../hapi-fhir-base/target/classes</classFolder>
					</classFolders>
					<sourceFolders>
						<sourceFolder>${basedir}/src/main/java</sourceFolder>
						<sourceFolder>${basedir}/../hapi-fhir-base/src/main/java</sourceFolder>
					</sourceFolders>
					<dumpOnExit>true</dumpOnExit>
				</configuration>
				<executions>
					<execution>
						<id>default-prepare-agent</id>
						<goals>
							<goal>prepare-agent</goal>
						</goals>
					</execution>
				</executions>
			</plugin>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-surefire-plugin</artifactId>
				<configuration>
					<runOrder>alphabetical</runOrder>
					<argLine>${argLine} -Dfile.encoding=UTF-8 -Xmx1024m</argLine>
					<forkCount>0.6C</forkCount>
				</configuration>
			</plugin>
			<plugin>
				<groupId>ca.uhn.hapi.fhir</groupId>
				<artifactId>hapi-tinder-plugin</artifactId>
				<version>${project.version}</version>
				<executions>
					<!-- 
					<execution>
						<id>build_dstu1</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>dstu</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.dstu</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu1.xml</targetResourceSpringBeansFile>
							<baseResourceNames></baseResourceNames>
						</configuration>
					</execution>
					-->
					<execution>
						<id>build_dstu2</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>dstu2</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.dstu2</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu2.xml</targetResourceSpringBeansFile>
							<baseResourceNames></baseResourceNames>
							<excludeResourceNames>
								<!-- <excludeResourceName>OperationDefinition</excludeResourceName> <excludeResourceName>OperationOutcome</excludeResourceName> -->
							</excludeResourceNames>
						</configuration>
					</execution>
					<execution>
						<id>build_dstu3</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>dstu3</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.dstu3</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-dstu3.xml</targetResourceSpringBeansFile>
							<baseResourceNames></baseResourceNames>
							<excludeResourceNames>
							</excludeResourceNames>
						</configuration>
					</execution>
					<execution>
						<id>build_r4</id>
						<goals>
							<goal>generate-jparest-server</goal>
						</goals>
						<configuration>
							<version>r4</version>
							<configPackageBase>ca.uhn.fhir.jpa.config</configPackageBase>
							<packageBase>ca.uhn.fhir.jpa.rp.r4</packageBase>
							<targetResourceSpringBeansFile>hapi-fhir-server-resourceproviders-r4.xml</targetResourceSpringBeansFile>
							<baseResourceNames></baseResourceNames>
							<excludeResourceNames>
							</excludeResourceNames>
						</configuration>
					</execution>
				</executions>

				<dependencies>
					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-structures-dstu2</artifactId>
						<version>${project.version}</version>
					</dependency>
					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-structures-dstu3</artifactId>
						<version>${project.version}</version>
					</dependency>
					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-structures-r4</artifactId>
						<version>${project.version}</version>
					</dependency>

					<dependency>
						<groupId>ca.uhn.hapi.fhir</groupId>
						<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
						<version>${project.version}</version>
					</dependency>
				</dependencies>
			</plugin>
			<plugin>
				<groupId>org.codehaus.mojo</groupId>
				<artifactId>build-helper-maven-plugin</artifactId>
				<executions>
					<execution>
						<id>add-source</id>
						<phase>generate-sources</phase>
						<goals>
							<goal>add-source</goal>
						</goals>
						<configuration>
							<sources>
								<source>target/generated-sources/tinder</source>
							</sources>
						</configuration>
					</execution>
				</executions>
			</plugin>
		</plugins>
		<resources>
			<resource>
				<directory>${basedir}/src/main/resources</directory>
			</resource>
			<resource>
				<directory>${basedir}/target/generated-resources/tinder</directory>
			</resource>
		</resources>
	</build>

	<reporting>
		<plugins>
			<plugin>
				<groupId>org.apache.maven.plugins</groupId>
				<artifactId>maven-jxr-plugin</artifactId>
			</plugin>
		</plugins>
	</reporting>

	<profiles>
		<profile>
			<id>JENKINS</id>
			<properties>
				<skip-hib4>true</skip-hib4>
			</properties>
		</profile>
		<profile>
			<id>NOPARALLEL</id>
			<build>
				<plugins>
					<plugin>
						<groupId>org.apache.maven.plugins</groupId>
						<artifactId>maven-surefire-plugin</artifactId>
						<configuration>
							<forkCount>1</forkCount>
							<excludes>
								<exclude>**/stresstest/*</exclude>
							</excludes>
						</configuration>
					</plugin>
				</plugins>
			</build>
		</profile>
		<profile>
			<id>MINPARALLEL</id>
			<build>
				<plugins>
					<plugin>
						<groupId>org.apache.maven.plugins</groupId>
						<artifactId>maven-surefire-plugin</artifactId>
						<configuration>
							<forkCount>2</forkCount>
							<reuseForks>true</reuseForks>
							<excludes>
								<exclude>**/stresstest/*</exclude>
							</excludes>
						</configuration>
					</plugin>
				</plugins>
			</build>
		</profile>
</profiles>

</project>