hapi-fhir/hapi-tinder-test/pom.xml

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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
7 0 0 mb (#5678) * pom bump to 7.0.0 (#5615) * pom bump to 7.0.0 * add version enum * fixed feb release name --------- Co-authored-by: Long Ma <long@smilecdr.com> * Check index existence on raw SQL creation (#5624) * Add conditional check on index existence before we try again * Add conditional check on index existence before we try again * Changelog * remit * remit * debug statements * 5621 deadlock on caffeine cache when creating a resource with conditional create (#5622) * Modifying the CacheProvider to avoid doing db I/O within the cache miss value supplier callback. * Setting the initial capacity of instantiated caches to the cache max size to avoid resizing during operations. * adding changelog and spotless. * Fixing typo. * Addressing comments from code review. --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * Searching with more than one chained Bundle SearchParameter returns incorrect results (#5614) * Failing test * fix * changelog * Avoiding Exception being thrown on @EventListener invocation (#5628) * replaced EventListener annotation with @PreDestroy * adding changelog --------- Co-authored-by: peartree <etienne.poirier@smilecdr.com> * simple fix (#5630) Co-authored-by: Long Ma <long@smilecdr.com> * Incorrect version of auto versioned reference for conditional update with urn id placeholder (#5625) * Incorrect version from versioned_references.auto_at_paths for conditional update - implementation * Oracle: Ensure migrated database still takes large resource text updates (#5629) * First pass at fix to Oracle HFJ_RES_VER.RES_TEXT_VC migration. * First stab at agreed upon solution. * Fix error with 4001 by removing unnecessary annotation. * Spotless and TODO. * Remove annotation for good and set length to LONG32. * Fix copyright year. * Finalize changelog. * Remove migration changes. Fix unit test. * Fix compile error. * Log output. * Refactor resource history code into new ResourceHistoryCalculator. * Spotless. * Convert record to POJO. * Restore pre-17 switch statement. * Finalize new resource history calculator code and tests. * Spotless. * Remove logging. * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/7_0_0/5633-oracle-hfj-res-ver-clob-migration.yaml Apply code reviewer suggestion Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * Code review feedback. --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> * Fix expansion for `ValueSet` with no concepts based on CodeSystem `urn:ietf:bcp:13` (#5638) * When fetching the mimetype code system, return empty CodeSystem with NOTSUPPORTED content. Update expansion logic to handle this case. Add some test cases. * Minor change to fix test * Rename changelog file * Remove TODOs as they're replaced by reported issue * Revert accidental change added with TODO removal * $expunge operation ignoring ExpungeThreadCount setting in certain cases (#5637) * $expunge operation ignoring ExpungeThreadCount setting in certain cases - implementation * Fix Measure group id null pointer exception (#5620) * Update to new version of clinical reasoning, includes a fix for null pointers on Measure group id * add changelog --------- Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> * Rule evaluation: Allow Bundles with PATCH Parameters (#5641) * Remove parameters clause. * Finalize changelog. Add tests. Finalize implementation. * Undo changes to this test. * Revert all changes to FhirQueryRuleImplTest. Add new RuleImplOpTest. Ensure that proper nested Bundle is created for test and other fixes. * Tweak test. * Use real rule applier in test and remove all mocks. * Prevent batch2 job execution to stop for empty chunk when last job st… (#5635) * Prevent batch2 job execution to stop for empty chunk when last job step is a reduction. Add output to bulk export result even when empty. * Fix test * Unimportant change to force fresh build * Implement review suggestions --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Index review fixes (#5649) * Don't hold locks while adding indices during upgrade. * concurrent indexing is non-transactional in PG. * Fix conditional creates without leading '?' (#5646) * First commit with failing test. * More tests and logs. * More logs * Try new solution for BaseTransactionProcessor.performIdSubstitutionsInMatchUrl(). * Simplify solution. Add more tests. * Changelog. * javadoc * Searching for Bundles with read all Bundles permission returns 403 (#5644) * failing test * another failing test case * fix * changelog * fix bug * spotless * cr * Fix NullPointerException when performing a system bulk export in the presence of PatientIdPartitionInterceptor. (#5660) * Serializing changes for sensitive data (#5655) * Add new senstiive data serializer * Add new senstiive data serializer * Add new senstiive data serializer * Remove dead comments * Change up the test * review comments * wip * Tighten tests and push annotation down * Tighten tests and push annotation down * Changelog * Add test * 7.0.1-SNAPSHOT bump * Error code * Add method used by CDR * add version enum * Fix test * Rel 7 0 CVE (#5663) * Bump json-path * Pin parrson * Bump elastic * Bump spring version * Exclude JDBC * Descendent fix (#5669) * Fix "is-a" ValueSet expansion, add "descendent-of" support * Fixed tests in DSTU3 and R5 * Trigger new build * Revert "Trigger new build" This reverts commit 46c672b338db1f85c4f438344bfa828bfc723a37. * fix default partition setting on resource (#5617) * fix default partition setting on resource * changelog * Handle DEFAULT partition in rule checker. * Fix spotless --------- Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> * pom bump, doc add, version enum add (#5616) Co-authored-by: Long Ma <long@smilecdr.com> * fix default partition setting on resource (#5618) * fix default partition setting on resource * Handle DEFAULT partition in rule checker. Co-authored-by: Ken Stevens <khstevens@gmail.com> * Add setting to make broker not use JacksonMessageConverter (#5611) * Add setting to make broker not use JacksonMessageConverter * Add changelog * Implement suggestions --------- Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Fix version * add changelog, add attribution, remove accidental bring-overs * add changelog, add attribution, remove accidental bring-overs * Finish jira section --------- Co-authored-by: Ole Hedegaard <ohe@trifork.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com> Co-authored-by: longma1 <32119004+longma1@users.noreply.github.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * fix conflict mistake * removed test assert that is no longer true: * version bumpb to 7.1.1 * fix version Enum test --------- Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: Tadgh <garygrantgraham@gmail.com> Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com> Co-authored-by: peartree <etienne.poirier@smilecdr.com> Co-authored-by: Nathan Doef <n.doef@protonmail.com> Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com> Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com> Co-authored-by: Michael Buckley <michaelabuckley@gmail.com> Co-authored-by: Martha Mitran <martha.mitran@smilecdr.com> Co-authored-by: JP <jonathan.i.percival@gmail.com> Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: Ole Hedegaard <ohe@trifork.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: James Agnew <jamesagnew@gmail.com>
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<version>7.1.1-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
</parent>
<artifactId>hapi-tinder-test</artifactId>
<packaging>jar</packaging>
<name>HAPI Tinder Plugin - Test Project</name>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<!-- Because Tinder is a part of the HAPI FHIR build process (it generates a bunch of the actual HAPI structure code), but also uses HAPI FHIR in order to run (e.g. to load ValueSet resources), we keep
the dependencies for the structures a version behind the main library. This is weird, but it works. -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
<version>${project.version}</version>
<exclusions>
<exclusion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>${project.version}</version>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
<version>${project.version}</version>
<exclusions>
<exclusion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r5</artifactId>
<version>${project.version}</version>
</dependency>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-r5</artifactId>
<version>${project.version}</version>
</dependency>
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</dependencies>
<executions>
<execution>
<id>generalstructs</id>
<goals>
<goal>generate-structures</goal>
</goals>
<configuration>
<package>ca.uhn.test.realstructs</package>
<version>dstu2</version>
<baseResourceNames>
<baseResourceName>patient</baseResourceName>
<baseResourceName>valueset</baseResourceName>
<baseResourceName>organization</baseResourceName>
<baseResourceName>device</baseResourceName>
<baseResourceName>location</baseResourceName>
<baseResourceName>practitioner</baseResourceName>
<baseResourceName>list</baseResourceName>
<baseResourceName>auditevent</baseResourceName>
</baseResourceNames>
<buildDatatypes>true</buildDatatypes>
</configuration>
</execution>
<execution>
<id>generic_multi_dstu2</id>
<goals>
<goal>generate-multi-files</goal>
</goals>
<configuration>
<version>dstu2</version>
<generateResources>true</generateResources>
<templateFile>${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory>${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage>ca.uhn.test.generic.multi</targetPackage>
<filenameSuffix>ResourceTest.java</filenameSuffix>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution>
<id>generic_multi_dstu3</id>
<goals>
<goal>generate-multi-files</goal>
</goals>
<configuration>
<version>dstu3</version>
<generateResources>true</generateResources>
<resourceSource>model</resourceSource>
<templateFile>${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory>${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage>ca.uhn.test.generic.multi.dstu3</targetPackage>
<filenameSuffix>ResourceTest.java</filenameSuffix>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution>
<id>generic_multi_r4</id>
<goals>
<goal>generate-multi-files</goal>
</goals>
<configuration>
<version>r4</version>
<generateResources>true</generateResources>
<resourceSource>model</resourceSource>
<templateFile>${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory>${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage>ca.uhn.test.generic.multi.r4</targetPackage>
<filenameSuffix>ResourceTest.java</filenameSuffix>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution>
<id>generic_multi_r5</id>
<goals>
<goal>generate-multi-files</goal>
</goals>
<configuration>
<version>r5</version>
<generateResources>true</generateResources>
<resourceSource>model</resourceSource>
<templateFile>${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory>${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage>ca.uhn.test.generic.multi.r5</targetPackage>
<filenameSuffix>ResourceTest.java</filenameSuffix>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution>
<id>generic_multi_json</id>
<goals>
<goal>generate-multi-files</goal>
</goals>
<configuration>
<version>dstu2</version>
<generateResources>true</generateResources>
<resourceSource>spreadsheet</resourceSource>
<templateFile>${project.basedir}/src/test/resources/templates/resource_map.vm</templateFile>
<velocityPath>${project.basedir}/src/test/resources/macros</velocityPath>
<targetResourceDirectory>${project.build.directory}/generated-resources/tinder</targetResourceDirectory>
<targetFolder>maps</targetFolder>
<filenameSuffix>_Map.json</filenameSuffix>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
<includeResource>bundle</includeResource>
<includeResource>composition</includeResource>
</includeResources>
</configuration>
</execution>
<execution>
<id>generic_single_dstu2</id>
<goals>
<goal>generate-single-file</goal>
</goals>
<configuration>
<version>dstu2</version>
<generateResources>true</generateResources>
<templateFile>${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory>${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage>ca.uhn.test.generic.single</targetPackage>
<packageBase>ca.uhn.test.generic.multi</packageBase>
<targetFile>TestConfigDstu2.java</targetFile>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution>
<id>generic_single_dstu3</id>
<goals>
<goal>generate-single-file</goal>
</goals>
<configuration>
<version>dstu3</version>
<generateResources>true</generateResources>
<resourceSource>model</resourceSource>
<templateFile>${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory>${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage>ca.uhn.test.generic.single</targetPackage>
<packageBase>ca.uhn.test.generic.multi</packageBase>
<targetFile>TestConfigDstu3.java</targetFile>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution>
<id>generic_single_r4</id>
<goals>
<goal>generate-single-file</goal>
</goals>
<configuration>
<version>r4</version>
<generateResources>true</generateResources>
<resourceSource>model</resourceSource>
<templateFile>${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory>${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage>ca.uhn.test.generic.single.r4</targetPackage>
<packageBase>ca.uhn.test.generic.multi.r4</packageBase>
<targetFile>TestConfigR4.java</targetFile>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution>
<id>generic_single_r5</id>
<goals>
<goal>generate-single-file</goal>
</goals>
<configuration>
<version>r5</version>
<generateResources>true</generateResources>
<resourceSource>model</resourceSource>
<templateFile>${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory>${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage>ca.uhn.test.generic.single.r5</targetPackage>
<packageBase>ca.uhn.test.generic.multi.r5</packageBase>
<targetFile>TestConfigR5.java</targetFile>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution>
<id>generic_single_json</id>
<goals>
<goal>generate-single-file</goal>
</goals>
<configuration>
<version>dstu2</version>
<generateDatatypes>true</generateDatatypes>
<templateFile>${project.basedir}/src/test/resources/templates/composite_map.vm</templateFile>
<velocityPath>${project.basedir}/src/test/resources/macros</velocityPath>
<targetResourceDirectory>${project.build.directory}/generated-resources/tinder</targetResourceDirectory>
<targetFolder>maps</targetFolder>
<targetFile>Datatypes_Dstu2.json</targetFile>
<includeResources>
<includeResource>patient</includeResource>
<includeResource>organization</includeResource>
</includeResources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<artifactId>maven-antrun-plugin</artifactId>
<executions>
<execution>
<id>testTinderTask</id>
<phase>generate-sources</phase>
<goals>
<goal>run</goal>
</goals>
<configuration>
<target>
<taskdef name="hapi-tinder" classname="ca.uhn.fhir.tinder.ant.TinderGeneratorTask" classpathref="maven.plugin.classpath" />
<hapi-tinder templateFile="${project.basedir}/src/test/resources/templates/resource_test.vm"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="dstu2" includeResources="patient,organization" />
<hapi-tinder templateFile="${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource="model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.dstu3" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="dstu3" includeResources="patient,organization" />
<hapi-tinder templateFile="${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource="model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.r4" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="r4" includeResources="patient,organization" />
<hapi-tinder templateFile="${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource="model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.r5" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="r5" includeResources="patient,organization" />
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<hapi-tinder templateFile="${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigDstu2.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi"
projectHome="${project.basedir}/.." version="dstu2" includeResources="patient,organization" />
<hapi-tinder templateFile="${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource="model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigDstu3.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.dstu3"
projectHome="${project.basedir}/.." version="dstu3" includeResources="patient,organization" />
<hapi-tinder templateFile="${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource="model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigR4.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.r4"
projectHome="${project.basedir}/.." version="r4" includeResources="patient,organization" />
<hapi-tinder templateFile="${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource="model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigR5.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.r5"
projectHome="${project.basedir}/.." version="r5" includeResources="patient,organization" />
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</target>
</configuration>
</execution>
</executions>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2.1</artifactId>
<version>${project.version}</version>
<exclusions>
<exclusion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r5</artifactId>
<version>${project.version}</version>
</dependency>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-validation-resources-r5</artifactId>
<version>${project.version}</version>
</dependency>
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<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>${project.version}</version>
</dependency>
</dependencies>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<id>add-source</id>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>target/generated-sources/tinder</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
<pluginManagement>
<plugins>
<!--This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
<plugin>
<groupId>org.eclipse.m2e</groupId>
<artifactId>lifecycle-mapping</artifactId>
<version>1.0.0</version>
<configuration>
<lifecycleMappingMetadata>
<pluginExecutions>
<pluginExecution>
<pluginExecutionFilter>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<versionRange>[0.4-SNAPSHOT,)</versionRange>
<goals>
<goal>generate-structures</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<versionRange>[0.4-SNAPSHOT,)</versionRange>
<goals>
<goal>generate-multi-files</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
<pluginExecution>
<pluginExecutionFilter>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<versionRange>[0.4-SNAPSHOT,)</versionRange>
<goals>
<goal>generate-single-file</goal>
</goals>
</pluginExecutionFilter>
<action>
<ignore></ignore>
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<resources>
<resource>
<directory>${basedir}/src/main/resources</directory>
</resource>
<resource>
<directory>${basedir}/target/generated-resources/tinder</directory>
</resource>
</resources>
</build>
Rel 6 0 mb 3 (#3933) * adding version.yaml, updating version in pom.xml * It is possible to write to a resource in a partition the user is not authorized to. (#3397) * fixed * remove sout * add msg.code * fix failed tests * fix equal sign * update msg code * extract method * Fix up code numbers * Clean changelog Co-authored-by: Tadgh <garygrantgraham@gmail.com> * Revert final artifact version * add graphql test (#3585) * added graphql birthdate test * fix variable name * typo * 3506 mdm log enhancement (#3543) * Providing Fixme's to be reworked at a later time. * Adding // FIXME Anna to assist our Austrian friend. * Adding logging test as a first step in addressing issue #2822. * hapifhir#3506 part 2: enhance logging for (un)successful MDM matching hapifhir#3506 part 2: enhance logging for (un)successful MDM matching * Update MdmMatchLinkSvc.java #3506 move "narrowed down" log to different place * #3506 added scores and tests #3506 added scores and tests * #3506 formatting #3506 formatting * #3506 create changelog file #3506 create changelog file * #3506 fix typo #3506 fix typo * #3506 fix part 3, minor formatting #3506 fix part 3, minor formatting * #3506 fix tests #3506 fix tests Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com> Co-authored-by: Anna <anna@MacBook-Pro.local> * mdm matching (#3579) * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e66e4f4dc76de135c1fe108ccbf9e3690c. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com> * begin with failing test * fixed * changelog * add jira tag * Update to 6 1 (#3582) * added changelog folder, upped version * version enum * add a few more unit tests to assert proper NO_MATCH exclusion * revert merge master doh! bad reflexes * revert merge origin master * unrevert revert. ugh what a pain * merge recovery. fix poms. * merge recovery. more reverting * merge recovery. more reverting * merge recovery. more reverting * Revert "merge recovery. fix poms." This reverts commit ae6e0ddb06bdcb424f9c4637eb0a987bc112b115. * more revert revert reversions * more revert revert reversions * pre-review cleanup Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com> Co-authored-by: Mark Iantorno <markiantorno@gmail.com> * Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586) * When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller. * License * Ks 20220508 log colour (#3592) * don't use colours when output is redirected to a file * change log * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594) * Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328 * Update HapiFhirJpaMigrationTasks.java Corrected ordering * Update HapiFhirJpaMigrationTasks.java Moving index status to be last operation * Revert "Update HapiFhirJpaMigrationTasks.java" This reverts commit 37bfd3e66e4f4dc76de135c1fe108ccbf9e3690c. * Moved to bottom Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com> Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com> * 3584 case sensitive string elasticsearch (#3596) * Fix for case-sensitive search with newer elasticsearch * Test and fix ascii normalization too * more test cases * comments * Docs update empi usecase (#3598) * Update diagram for use case 5 * Add new page for database support * Licnese * Mb norm fix (#3604) * Normalize query since wildcard searches aren't normalized in elastic * Handle batch2 job cancellation (#3603) * Handle batch2 job cancellation * Add CANCELLED status * Remove unuseful test Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * Add batch2 interfaces to obtain recent instances (#3601) Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> * changelog folder * Documentation change, added warning log and change log for ticket (#3609) Co-authored-by: Steven Li <steven@smilecdr.com> * fix ne for lastUpdated search param (#3589) * init/wip * add implementation, add tests * add checks and some refactoring * refactor and simplify tests * refactor * get rid of some of the warnings * add changelog * remove my todos * redo ne logic to account for less precise dates * add tests * refactoring * rename to follow convention Co-authored-by: Justin_Dar <justin.dar@smilecdr.com> * Version bump * Add skip of checkstyle to upload * Typo * upping version enum, upping version number, 6.0.1 * Group Bulk Export rules exiting too early. (#3643) * Implementation, test, changelog * Add jira link * adding backport in yaml for 3642 * adding folder for 6.0.1 release * pom changes to publish checkstyle to sonatype * bad version in pom file * Make FulltextSearchSvcImpl optional bean for ValuesetOperationProvider * AUtomcplete error code * updating comment indicating final erorr code * Bump error code * fixing version enum so release docs generate correctly, adding additional changelog for 3650 * 3684 subscription for delivering delete events formatted wrong (#3685) * Fixed issue with delivering delete events Subscriptions * Extracted deliverer class name to a constant, now shared across tests and interceptor class * Added change log and doc changes * moved the constant to a more appropriate place Co-authored-by: Steven Li <steven@smilecdr.com> * Version bump * Add version enum * Version enum and folder * adding release pipeline yml file fo azure * Adding autoclose for sonatype publishing (#3797) * Add impl test and changelog (#3713) * fix up changelog, new version * Version bump * Updating version to: 6.0.4 post release. * reverting 6.0.4 commit * Updating version to: 6.0.4 post release. * removing double entry from preious release * Add support for DSTU3 delete subscrion events, add test * Add changelogP * Add version enum * Remove notnull * Add test for DSTU2 * Updating version to: 6.0.5 post release. * Fix up * wip * Adding solution and changeLog file. * Adding failing test. * fix up * Version bump Co-authored-by: markiantorno <markiantorno@gmail.com> Co-authored-by: katiesmilecdr <88786813+katiesmilecdr@users.noreply.github.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: alackerbauer <33912849+alackerbauer@users.noreply.github.com> Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com> Co-authored-by: Anna <anna@MacBook-Pro.local> Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com> Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com> Co-authored-by: michaelabuckley <michael.buckley@smilecdr.com> Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com> Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com> Co-authored-by: StevenXLi <stevenli_8118@hotmail.com> Co-authored-by: Steven Li <steven@smilecdr.com> Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com> Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
2022-08-29 22:29:02 -04:00
<profiles>
<!-- For releases, we need to generate javadoc and sources JAR -->
<profile>
<id>release</id>
<activation>
<activeByDefault>false</activeByDefault>
<property>
<name>deployToSonatype</name>
</property>
</activation>
<build>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-source-plugin</artifactId>
<version>3.2.1</version>
<executions>
<execution>
<id>attach-sources</id>
<goals>
<goal>jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-javadoc-plugin</artifactId>
<version>3.4.0</version>
<executions>
<execution>
<id>attach-javadoc</id>
<goals>
<goal>jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
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</project>