hapi-fhir/hapi-fhir-jpaserver-cql/pom.xml

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<?xml version="1.0" encoding="UTF-8"?>
<project xmlns="http://maven.apache.org/POM/4.0.0"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.2.0-PRE17-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<artifactId>hapi-fhir-jpaserver-cql</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR JPA Server - Clinical Quality Language</name>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.dstu3</artifactId>
<version>${fhir_core_version}</version>
<scope>compile</scope>
</dependency>
<dependency>
<groupId>org.opencds.cqf.cql</groupId>
<artifactId>evaluator.engine</artifactId>
<version>${cql-evaluator.version}</version>
<exclusions>
<!-- we exclude this because we don't want javax.mail and will use jakarta.mail instead -->
<exclusion>
<groupId>com.sun.mail</groupId>
<artifactId>javax.mail</artifactId>
</exclusion>
Ks 20220916 remove flyway (#4040) * removed flyway, started coding persistence * started wiring up new dao service * replace jpa with sqlbuilder * down to 16 failed tests * remove outOfOrder test. We no longer support validating order. * Removed noFlyway mode. It is no longer a thing. * merge migrator * down to 1 failing test * cleanup * removed unused noflyway cli arguments * cleanup * cleanup * cleanup * cleanup * create MigrationTaskList to replace the List<BaseTask> that gets passed around a lot. This allows us to add a bunch of behaviour to that as a first-order thing * fix test * fix test * improve migration table detection to use the catalogue * Msg.code() * cleanup * save version in same format as flyway * cleanup * add migration result to migration result class * failed migrations stay in the table and don't really affect anything. * change log * docs * ugh Flyway requires lower-case column names * integration test fixes * log * fix oracle issue * lowercase tablenames for postgres. fussy fussy! * Revert "lowercase tablenames for postgres. fussy fussy!" This reverts commit 92c9cb263b90cff2190cc327fab051dc3bb2f83f. * revert to capital table names. surround table name by quotes for Postgres. * added log message before executing find all query * changed log message from info to debug * javadoc * pom cleanup * review feedback * Update hapi-fhir-sql-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/MigrationTaskList.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * review feedback * review feedback. Use prepared statement. * Change installedOn insert from timestamp to date * Change installedOn column type from timestamp to date * bump hapi version * fix poms * fix poms and cdr compile * add exclusions to clean up build Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
2022-10-03 22:40:09 -04:00
<exclusion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-client</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.opencds.cqf.cql</groupId>
<artifactId>engine</artifactId>
<version>${cql-engine.version}</version>
<exclusions>
<exclusion>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
</exclusion>
<exclusion>
<groupId>jakarta.xml.bind</groupId>
<artifactId>jakarta.xml.bind-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>org.opencds.cqf.cql</groupId>
<artifactId>engine.fhir</artifactId>
<version>${cql-engine.version}</version>
<exclusions>
<exclusion>
<groupId>org.slf4j</groupId>
<artifactId>slf4j-log4j12</artifactId>
</exclusion>
Ks 20220916 remove flyway (#4040) * removed flyway, started coding persistence * started wiring up new dao service * replace jpa with sqlbuilder * down to 16 failed tests * remove outOfOrder test. We no longer support validating order. * Removed noFlyway mode. It is no longer a thing. * merge migrator * down to 1 failing test * cleanup * removed unused noflyway cli arguments * cleanup * cleanup * cleanup * cleanup * create MigrationTaskList to replace the List<BaseTask> that gets passed around a lot. This allows us to add a bunch of behaviour to that as a first-order thing * fix test * fix test * improve migration table detection to use the catalogue * Msg.code() * cleanup * save version in same format as flyway * cleanup * add migration result to migration result class * failed migrations stay in the table and don't really affect anything. * change log * docs * ugh Flyway requires lower-case column names * integration test fixes * log * fix oracle issue * lowercase tablenames for postgres. fussy fussy! * Revert "lowercase tablenames for postgres. fussy fussy!" This reverts commit 92c9cb263b90cff2190cc327fab051dc3bb2f83f. * revert to capital table names. surround table name by quotes for Postgres. * added log message before executing find all query * changed log message from info to debug * javadoc * pom cleanup * review feedback * Update hapi-fhir-sql-migrate/src/main/java/ca/uhn/fhir/jpa/migrate/MigrationTaskList.java Co-authored-by: michaelabuckley <michaelabuckley@gmail.com> * review feedback * review feedback. Use prepared statement. * Change installedOn insert from timestamp to date * Change installedOn column type from timestamp to date * bump hapi version * fix poms * fix poms and cdr compile * add exclusions to clean up build Co-authored-by: Ken Stevens <ken@smilecdr.com> Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
2022-10-03 22:40:09 -04:00
<exclusion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-client</artifactId>
</exclusion>
<exclusion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
</exclusion>
<exclusion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>cql-to-elm</artifactId>
<version>${cqframework.version}</version>
<exclusions>
<exclusion>
<groupId>jakarta.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
</exclusion>
<exclusion>
<groupId>jakarta.xml.bind</groupId>
<artifactId>jakarta.xml.bind-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>info.cqframework</groupId>
<artifactId>quick</artifactId>
<version>${cqframework.version}</version>
<exclusions>
<exclusion>
<groupId>jakarta.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
</exclusion>
<exclusion>
<groupId>jakarta.xml.bind</groupId>
<artifactId>jakarta.xml.bind-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>${jaxb_api_version}</version>
<exclusions>
<exclusion>
<groupId>javax.activation</groupId>
<artifactId>javax.activation-api</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.jamesmurty.utils</groupId>
<artifactId>java-xmlbuilder</artifactId>
<version>1.3</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-server</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu3</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r4</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-r5</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-base</artifactId>
<version>${project.version}</version>
<exclusions>
<exclusion>
<groupId>com.sun.activation</groupId>
<artifactId>javax.activation</artifactId>
</exclusion>
</exclusions>
</dependency>
<!-- test -->
<dependency>
<groupId>org.testcontainers</groupId>
<artifactId>junit-jupiter</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.mockito</groupId>
<artifactId>mockito-core</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-test</artifactId>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-test-utilities</artifactId>
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<version>${project.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-storage-test-utilities</artifactId>
<version>${project.version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-test-utilities</artifactId>
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<version>${project.version}</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<plugins>
<plugin>
<groupId>org.basepom.maven</groupId>
<artifactId>duplicate-finder-maven-plugin</artifactId>
<configuration>
<failBuildInCaseOfDifferentContentConflict>false</failBuildInCaseOfDifferentContentConflict>
<failBuildInCaseOfEqualContentConflict>false</failBuildInCaseOfEqualContentConflict>
<failBuildInCaseOfConflict>false</failBuildInCaseOfConflict>
</configuration>
</plugin>
</plugins>
</build>
</project>