2019-12-15 19:11:27 -05:00
<project xmlns= "http://maven.apache.org/POM/4.0.0" xmlns:xsi= "http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation= "http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd" >
<modelVersion > 4.0.0</modelVersion>
<parent >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir</artifactId>
GM1 Mergeback (#5203)
* version bump
* Bump to core release 6.0.22 (#5028)
* Bump to core release 6.0.16
* Bump to core version 6.0.20
* Fix errors thrown as a result of VersionSpecificWorkerContextWrapper
* Bump to core 6.0.22
* Resolve 5126 hfj res ver prov might cause migration error on db that automatically indexes the primary key (#5127)
* dropped old index FK_RESVERPROV_RES_PID on RES_PID column before adding IDX_RESVERPROV_RES_PID
* added changelog
* changed to valid version number
* changed to valid version number, need to be ordered by version number...
* 5123 - Use DEFAULT partition for server-based requests if none specified (#5124)
5123 - Use DEFAULT partition for server-based requests if none specified
* consent remove all suppresses next link in bundle (#5119)
* added FIXME with source of issue
* added FIXME with root cause
* added FIXME with root cause
* Providing solution to the issue and removing fixmes.
* Providing changelog
* auto-formatting.
* Adding new test.
* Adding a new test for standard paging
* let's try this and see if it works...?
* fix tests
* cleanup to trigger a new run
* fixing tests
---------
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
* 5117 MDM Score for No Match Fields Should Not Be Included in Total Score (#5118)
* fix, test, changelog
* fix, test, changelog
---------
Co-authored-by: justindar <justin.dar@smilecdr.com>
* Rename file to force IT mode
* _source search parameter needs to support modifiers (#5095)
_source search parameter needs to support modifiers - added support form :contains, :missing, :above modifiers
* Fix HFQL docs (#5151)
* Expunge operation on codesystem may throw 500 internal error with precondition fail message. (#5156)
* Initial failing test.
* Solution with changelog.
* fixing format.
* Addressing comment from code review.
* fixing failing test.
---------
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
* documentation update (#5154)
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
* Fix hsql jdbc driver deps (#5168)
Avoid non-included classes in jdbc driver dependencies.
* $delete-expunge over 10k resources will now delete all resources (#5144)
* First commit with very rough fix and unit test.
* Refinements to ResourceIdListStep and Batch2DaoSvcImpl. Make LoadIdsStepTest pass. Enhance Batch2DaoSvcImplTest.
* Spotless
* Fix checkstyle errors.
* Fix test failures.
* Minor refactoring. New unit test. Finalize changelist.
* Spotless fix.
* Delete now useless code from unit test.
* Delete more useless code.
* Test pre-commit hook
* More spotless fixes.
* Address most code review feedback.
* Remove use of pageSize parameter and see if this breaks the pipeline.
* Remove use of pageSize parameter and see if this breaks the pipeline.
* Fix the noUrl case by passing an unlimited Pegeable instead. Effectively stop using page size for most databases.
* Deprecate the old method and have it call the new one by default.
* updating documentation (#5170)
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
* _source search parameter modifiers for Subscription matching (#5159)
* _source search parameter modifiers for Subscription matching - test, implementation and changelog
* Removal of meta tags during updates do not trigger subscription (#5181)
* Initial failing test.
* adding solution;
fixing documentation;
* spotless apply
* adding changelog
* modifying current test
---------
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
* Issue 5173 get gateway everything doesnt return all patients (#5174)
* Failing test
* Also set offset and count in base DAO override
* Changelog
* Fix for specific case where count has been set in parameters
* spotless
* Improve checks
---------
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* Do not 500 and continue IG ingestion when different IGs try to save different ValueSets with colliding FHIR IDs (#5175)
* First commit with failing unit test and small tweaks.
* Swallow resource version exceptions from colliding ValueSet OIDs and log a descriptive error instead. Add more detailed unit testing.
* Tweaks to logic and update the changelog. Reverse all changes to TermReadSvcImpl.
* Revert PackageResourceParsingSvc to release branch baseline.
* Accept code reviewer suggestion to change changelog description.
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
---------
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
* Fix link
* Remove target slf4j version
* dont use new API for a bit (#5191)
* Return DropIdGeneratorTask from the Builder to permit clients to mutate the (#5193)
DropIdGeneratorTask.
* Dqm performance bug update and provider loader fix (#5180)
* update tests, move properties, update operation loader
* update wip
* remove test
* fixing tests, adding config
* update config and provider loader
* fix bundles
* fix cache settings on tests
* version bump and change log
* version bump
* fix formatting
* CVE-2022-45868
* wip cve change
* cve h2 add back in
---------
Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com>
* bulkExportReuse with POST and GET (#5161)
* string manipulation
* Code to ensure bulkExportReuse works with POST and GET requests
* Added formatting changes
* Fixed tests that were not working
* Formatting
* Code clean up
* fixing test failures
* fixing test failures
* Removed arrOfParams to now utilize ObjectMapper
* Removing stack trace and adding an exception
* Fixed test issue
* formatting
* formatting
* Resolving code review comments
* Reduce size of subscription max results (#5194)
* Reduce MAX_SUBSCRIPTION_RESULTS to 10000
* Add changelog
* 5037 goldenresource remains when target resource deleted (#5038)
* draft test and fix
* remove unused fields
* remove unused fields
* remove unused fields
* draft test + solution for possible match case
* combine sql statement + more error checking
* add test case for possible duplicate
* add config for autodeleting grs
* refactoring, adding support for mongo, docs
* refactoring + fixing mongo queries
* add changelogs
* fix both way link removal
* clean up test comments
* rename method
* remove unnecessary bean
* merge master/resolve conflicts
* mvn spotless
* address comment
* changes to avoid version bumping
* spotless
* change error code
---------
Co-authored-by: justindar <justin.dar@smilecdr.com>
* dont use new API for a bit (#5190)
* licenses
* wip
* Fix API usage
* wip
* Version bump
---------
Co-authored-by: dotasek <david.otasek@smilecdr.com>
Co-authored-by: TynerGjs <132295567+TynerGjs@users.noreply.github.com>
Co-authored-by: Steve Corbett <137920358+steve-corbett-smilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: justindar <justin.dar@smilecdr.com>
Co-authored-by: volodymyr-korzh <132366313+volodymyr-korzh@users.noreply.github.com>
Co-authored-by: Nathan Doef <n.doef@protonmail.com>
Co-authored-by: Etienne Poirier <33007955+epeartree@users.noreply.github.com>
Co-authored-by: TipzCM <leif.stawnyczy@gmail.com>
Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
Co-authored-by: Luke deGruchy <luke.degruchy@smilecdr.com>
Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: Justin McKelvy <60718638+Capt-Mac@users.noreply.github.com>
Co-authored-by: justin.mckelvy <justin.mckelvy@smilecdr.com>
Co-authored-by: LalithE <132382565+LalithE@users.noreply.github.com>
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<version > 6.9.3-SNAPSHOT</version>
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<relativePath > ../pom.xml</relativePath>
</parent>
<artifactId > hapi-tinder-test</artifactId>
<packaging > jar</packaging>
<name > HAPI Tinder Plugin - Test Project</name>
<dependencies >
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<!-- Because Tinder is a part of the HAPI FHIR build process (it generates a bunch of the actual HAPI structure code), but also uses HAPI FHIR in order to run (e.g. to load ValueSet resources), we keep
the dependencies for the structures a version behind the main library. This is weird, but it works. -->
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2.1</artifactId>
<version > ${project.version}</version>
<exclusions >
<exclusion >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-hl7org-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
</dependencies>
<build >
<plugins >
<plugin >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<version > ${project.version}</version>
<dependencies >
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2.1</artifactId>
<version > ${project.version}</version>
<exclusions >
<exclusion >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-r4</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-r5</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-hl7org-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-r4</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-r5</artifactId>
<version > ${project.version}</version>
</dependency>
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</dependencies>
<executions >
<execution >
<id > generalstructs</id>
<goals >
<goal > generate-structures</goal>
</goals>
<configuration >
<package > ca.uhn.test.realstructs</package>
<version > dstu2</version>
<baseResourceNames >
<baseResourceName > patient</baseResourceName>
<baseResourceName > valueset</baseResourceName>
<baseResourceName > organization</baseResourceName>
<baseResourceName > device</baseResourceName>
<baseResourceName > location</baseResourceName>
<baseResourceName > practitioner</baseResourceName>
<baseResourceName > list</baseResourceName>
<baseResourceName > auditevent</baseResourceName>
</baseResourceNames>
<buildDatatypes > true</buildDatatypes>
</configuration>
</execution>
<execution >
<id > generic_multi_dstu2</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > dstu2</version>
<generateResources > true</generateResources>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.multi</targetPackage>
<filenameSuffix > ResourceTest.java</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution >
<id > generic_multi_dstu3</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > dstu3</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.multi.dstu3</targetPackage>
<filenameSuffix > ResourceTest.java</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
<execution >
<id > generic_multi_r4</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > r4</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.multi.r4</targetPackage>
<filenameSuffix > ResourceTest.java</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_multi_r5</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > r5</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.multi.r5</targetPackage>
<filenameSuffix > ResourceTest.java</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_multi_json</id>
<goals >
<goal > generate-multi-files</goal>
</goals>
<configuration >
<version > dstu2</version>
<generateResources > true</generateResources>
<resourceSource > spreadsheet</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_map.vm</templateFile>
<velocityPath > ${project.basedir}/src/test/resources/macros</velocityPath>
<targetResourceDirectory > ${project.build.directory}/generated-resources/tinder</targetResourceDirectory>
<targetFolder > maps</targetFolder>
<filenameSuffix > _Map.json</filenameSuffix>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
<includeResource > bundle</includeResource>
<includeResource > composition</includeResource>
</includeResources>
</configuration>
</execution>
<execution >
<id > generic_single_dstu2</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > dstu2</version>
<generateResources > true</generateResources>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.single</targetPackage>
<packageBase > ca.uhn.test.generic.multi</packageBase>
<targetFile > TestConfigDstu2.java</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_single_dstu3</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > dstu3</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.single</targetPackage>
<packageBase > ca.uhn.test.generic.multi</packageBase>
<targetFile > TestConfigDstu3.java</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_single_r4</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > r4</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.single.r4</targetPackage>
<packageBase > ca.uhn.test.generic.multi.r4</packageBase>
<targetFile > TestConfigR4.java</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_single_r5</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > r5</version>
<generateResources > true</generateResources>
<resourceSource > model</resourceSource>
<templateFile > ${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm</templateFile>
<targetSourceDirectory > ${project.build.directory}/generated-sources/tinder</targetSourceDirectory>
<targetPackage > ca.uhn.test.generic.single.r5</targetPackage>
<packageBase > ca.uhn.test.generic.multi.r5</packageBase>
<targetFile > TestConfigR5.java</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
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<execution >
<id > generic_single_json</id>
<goals >
<goal > generate-single-file</goal>
</goals>
<configuration >
<version > dstu2</version>
<generateDatatypes > true</generateDatatypes>
<templateFile > ${project.basedir}/src/test/resources/templates/composite_map.vm</templateFile>
<velocityPath > ${project.basedir}/src/test/resources/macros</velocityPath>
<targetResourceDirectory > ${project.build.directory}/generated-resources/tinder</targetResourceDirectory>
<targetFolder > maps</targetFolder>
<targetFile > Datatypes_Dstu2.json</targetFile>
<includeResources >
<includeResource > patient</includeResource>
<includeResource > organization</includeResource>
</includeResources>
</configuration>
</execution>
</executions>
</plugin>
<plugin >
<artifactId > maven-antrun-plugin</artifactId>
<executions >
<execution >
<id > testTinderTask</id>
<phase > generate-sources</phase>
<goals >
<goal > run</goal>
</goals>
<configuration >
<target >
<taskdef name= "hapi-tinder" classname= "ca.uhn.fhir.tinder.ant.TinderGeneratorTask" classpathref= "maven.plugin.classpath" />
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<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test.vm"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="dstu2" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.dstu3" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="dstu3" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.r4" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="r4" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetPackage="ca.uhn.test.ant.multi.r5" filenameSuffix="ResourceTest.java" projectHome="${project.basedir}/.."
version="r5" includeResources="patient,organization" />
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<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigDstu2.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi"
projectHome="${project.basedir}/.." version="dstu2" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigDstu3.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.dstu3"
projectHome="${project.basedir}/.." version="dstu3" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigR4.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.r4"
projectHome="${project.basedir}/.." version="r4" includeResources="patient,organization" />
<hapi-tinder templateFile= "${project.basedir}/src/test/resources/templates/resource_test_beans_java.vm" resourceSource= "model"
generateResources="true" targetSourceDirectory="${project.build.directory}/generated-sources/tinder"
targetFile="TestConfigR5.java" targetPackage="ca.uhn.test.ant.single" packageBase="ca.uhn.test.ant.multi.r5"
projectHome="${project.basedir}/.." version="r5" includeResources="patient,organization" />
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</target>
</configuration>
</execution>
</executions>
<dependencies >
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu2.1</artifactId>
<version > ${project.version}</version>
<exclusions >
<exclusion >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-base</artifactId>
</exclusion>
</exclusions>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-r4</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-r5</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-structures-hl7org-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu2</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-dstu3</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-r4</artifactId>
<version > ${project.version}</version>
</dependency>
<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-fhir-validation-resources-r5</artifactId>
<version > ${project.version}</version>
</dependency>
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<dependency >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<version > ${project.version}</version>
</dependency>
</dependencies>
</plugin>
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-deploy-plugin</artifactId>
<configuration >
<skip > true</skip>
</configuration>
</plugin>
<plugin >
<groupId > org.codehaus.mojo</groupId>
<artifactId > build-helper-maven-plugin</artifactId>
<executions >
<execution >
<id > add-source</id>
<phase > generate-sources</phase>
<goals >
<goal > add-source</goal>
</goals>
<configuration >
<sources >
<source > target/generated-sources/tinder</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
<pluginManagement >
<plugins >
<!-- This plugin's configuration is used to store Eclipse m2e settings only. It has no influence on the Maven build itself. -->
<plugin >
<groupId > org.eclipse.m2e</groupId>
<artifactId > lifecycle-mapping</artifactId>
<version > 1.0.0</version>
<configuration >
<lifecycleMappingMetadata >
<pluginExecutions >
<pluginExecution >
<pluginExecutionFilter >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<versionRange > [0.4-SNAPSHOT,)</versionRange>
<goals >
<goal > generate-structures</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
<pluginExecution >
<pluginExecutionFilter >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<versionRange > [0.4-SNAPSHOT,)</versionRange>
<goals >
<goal > generate-multi-files</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
<pluginExecution >
<pluginExecutionFilter >
<groupId > ca.uhn.hapi.fhir</groupId>
<artifactId > hapi-tinder-plugin</artifactId>
<versionRange > [0.4-SNAPSHOT,)</versionRange>
<goals >
<goal > generate-single-file</goal>
</goals>
</pluginExecutionFilter>
<action >
<ignore > </ignore>
</action>
</pluginExecution>
</pluginExecutions>
</lifecycleMappingMetadata>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<resources >
<resource >
<directory > ${basedir}/src/main/resources</directory>
</resource>
<resource >
<directory > ${basedir}/target/generated-resources/tinder</directory>
</resource>
</resources>
</build>
Rel 6 0 mb 3 (#3933)
* adding version.yaml, updating version in pom.xml
* It is possible to write to a resource in a partition the user is not authorized to. (#3397)
* fixed
* remove sout
* add msg.code
* fix failed tests
* fix equal sign
* update msg code
* extract method
* Fix up code numbers
* Clean changelog
Co-authored-by: Tadgh <garygrantgraham@gmail.com>
* Revert final artifact version
* add graphql test (#3585)
* added graphql birthdate test
* fix variable name
* typo
* 3506 mdm log enhancement (#3543)
* Providing Fixme's to be reworked at a later time.
* Adding // FIXME Anna to assist our Austrian friend.
* Adding logging test as a first step in addressing issue #2822.
* hapifhir#3506 part 2: enhance logging for (un)successful MDM matching
hapifhir#3506 part 2: enhance logging for (un)successful MDM matching
* Update MdmMatchLinkSvc.java
#3506 move "narrowed down" log to different place
* #3506 added scores and tests
#3506 added scores and tests
* #3506 formatting
#3506 formatting
* #3506 create changelog file
#3506 create changelog file
* #3506 fix typo
#3506 fix typo
* #3506 fix part 3, minor formatting
#3506 fix part 3, minor formatting
* #3506 fix tests
#3506 fix tests
Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
Co-authored-by: Anna <anna@MacBook-Pro.local>
* mdm matching (#3579)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328
* Update HapiFhirJpaMigrationTasks.java
Corrected ordering
* Update HapiFhirJpaMigrationTasks.java
Moving index status to be last operation
* Revert "Update HapiFhirJpaMigrationTasks.java"
This reverts commit 37bfd3e66e4f4dc76de135c1fe108ccbf9e3690c.
* Moved to bottom
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
* begin with failing test
* fixed
* changelog
* add jira tag
* Update to 6 1 (#3582)
* added changelog folder, upped version
* version enum
* add a few more unit tests to assert proper NO_MATCH exclusion
* revert merge master doh! bad reflexes
* revert merge origin master
* unrevert revert. ugh what a pain
* merge recovery. fix poms.
* merge recovery. more reverting
* merge recovery. more reverting
* merge recovery. more reverting
* Revert "merge recovery. fix poms."
This reverts commit ae6e0ddb06bdcb424f9c4637eb0a987bc112b115.
* more revert revert reversions
* more revert revert reversions
* pre-review cleanup
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: Mark Iantorno <markiantorno@gmail.com>
* Fix regression of 3411 - _lastUpdated gets clobbered during $reindex job (#3586)
* When chunking for the reindex job, don't clobber the lastUpdated if provided by the caller.
* License
* Ks 20220508 log colour (#3592)
* don't use colours when output is redirected to a file
* change log
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter… (#3551) (#3594)
* Added fix for https://github.com/hapifhir/hapi-fhir-jpaserver-starter/issues/328
* Update HapiFhirJpaMigrationTasks.java
Corrected ordering
* Update HapiFhirJpaMigrationTasks.java
Moving index status to be last operation
* Revert "Update HapiFhirJpaMigrationTasks.java"
This reverts commit 37bfd3e66e4f4dc76de135c1fe108ccbf9e3690c.
* Moved to bottom
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
* 3584 case sensitive string elasticsearch (#3596)
* Fix for case-sensitive search with newer elasticsearch
* Test and fix ascii normalization too
* more test cases
* comments
* Docs update empi usecase (#3598)
* Update diagram for use case 5
* Add new page for database support
* Licnese
* Mb norm fix (#3604)
* Normalize query since wildcard searches aren't normalized in elastic
* Handle batch2 job cancellation (#3603)
* Handle batch2 job cancellation
* Add CANCELLED status
* Remove unuseful test
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* Add batch2 interfaces to obtain recent instances (#3601)
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
* changelog folder
* Documentation change, added warning log and change log for ticket (#3609)
Co-authored-by: Steven Li <steven@smilecdr.com>
* fix ne for lastUpdated search param (#3589)
* init/wip
* add implementation, add tests
* add checks and some refactoring
* refactor and simplify tests
* refactor
* get rid of some of the warnings
* add changelog
* remove my todos
* redo ne logic to account for less precise dates
* add tests
* refactoring
* rename to follow convention
Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
* Version bump
* Add skip of checkstyle to upload
* Typo
* upping version enum, upping version number, 6.0.1
* Group Bulk Export rules exiting too early. (#3643)
* Implementation, test, changelog
* Add jira link
* adding backport in yaml for 3642
* adding folder for 6.0.1 release
* pom changes to publish checkstyle to sonatype
* bad version in pom file
* Make FulltextSearchSvcImpl optional bean for ValuesetOperationProvider
* AUtomcplete error code
* updating comment indicating final erorr code
* Bump error code
* fixing version enum so release docs generate correctly, adding additional changelog for 3650
* 3684 subscription for delivering delete events formatted wrong (#3685)
* Fixed issue with delivering delete events Subscriptions
* Extracted deliverer class name to a constant, now shared across tests and interceptor class
* Added change log and doc changes
* moved the constant to a more appropriate place
Co-authored-by: Steven Li <steven@smilecdr.com>
* Version bump
* Add version enum
* Version enum and folder
* adding release pipeline yml file fo azure
* Adding autoclose for sonatype publishing (#3797)
* Add impl test and changelog (#3713)
* fix up changelog, new version
* Version bump
* Updating version to: 6.0.4 post release.
* reverting 6.0.4 commit
* Updating version to: 6.0.4 post release.
* removing double entry from preious release
* Add support for DSTU3 delete subscrion events, add test
* Add changelogP
* Add version enum
* Remove notnull
* Add test for DSTU2
* Updating version to: 6.0.5 post release.
* Fix up
* wip
* Adding solution and changeLog file.
* Adding failing test.
* fix up
* Version bump
Co-authored-by: markiantorno <markiantorno@gmail.com>
Co-authored-by: katiesmilecdr <88786813+katiesmilecdr@users.noreply.github.com>
Co-authored-by: Ken Stevens <khstevens@gmail.com>
Co-authored-by: alackerbauer <33912849+alackerbauer@users.noreply.github.com>
Co-authored-by: Etienne Poirier <etienne.poirier@smilecdr.com>
Co-authored-by: Anna <anna@MacBook-Pro.local>
Co-authored-by: Jens Kristian Villadsen <jenskristianvilladsen@gmail.com>
Co-authored-by: Jens Kristian Villadsen <jvi@trifork.com>
Co-authored-by: michaelabuckley <michael.buckley@smilecdr.com>
Co-authored-by: jmarchionatto <60409882+jmarchionatto@users.noreply.github.com>
Co-authored-by: juan.marchionatto <juan.marchionatto@smilecdr.com>
Co-authored-by: StevenXLi <stevenli_8118@hotmail.com>
Co-authored-by: Steven Li <steven@smilecdr.com>
Co-authored-by: jdar8 <69840459+jdar8@users.noreply.github.com>
Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
2022-08-29 22:29:02 -04:00
<profiles >
<!-- For releases, we need to generate javadoc and sources JAR -->
<profile >
<id > release</id>
<activation >
<activeByDefault > false</activeByDefault>
<property >
<name > deployToSonatype</name>
</property>
</activation>
<build >
<plugins >
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-source-plugin</artifactId>
<version > 3.2.1</version>
<executions >
<execution >
<id > attach-sources</id>
<goals >
<goal > jar-no-fork</goal>
</goals>
</execution>
</executions>
</plugin>
<plugin >
<groupId > org.apache.maven.plugins</groupId>
<artifactId > maven-javadoc-plugin</artifactId>
<version > 3.4.0</version>
<executions >
<execution >
<id > attach-javadoc</id>
<goals >
<goal > jar</goal>
</goals>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles>
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</project>
