honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity

Migrate constant

This commit is contained in:
Tadgh 2021-03-29 11:07:23 -04:00
parent e8f49f2fba
commit 002d3fcf3c
3 changed files with 11 additions and 10 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

5
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/HapiExtensions.java
View File

@ -111,6 +111,11 @@ public class HapiExtensions {
*/ */
public static final String EXT_RESOURCE_PLACEHOLDER = "http://hapifhir.io/fhir/StructureDefinition/resource-placeholder"; public static final String EXT_RESOURCE_PLACEHOLDER = "http://hapifhir.io/fhir/StructureDefinition/resource-placeholder";
/**
* URL for extension in a Group Bulk Export which identifies the golden patient of a given exported resource.
*/
public static final String ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL = "https://hapifhir.org/associated-patient-golden-resource/";
/** /**
* Non instantiable * Non instantiable
*/ */

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/batch/processors/GoldenResourceAnnotatingProcessor.java
View File

@ -27,6 +27,7 @@ import ca.uhn.fhir.jpa.batch.log.Logs;
import ca.uhn.fhir.jpa.bulk.job.BulkExportJobConfig; import ca.uhn.fhir.jpa.bulk.job.BulkExportJobConfig;
import ca.uhn.fhir.jpa.dao.mdm.MdmExpansionCacheSvc; import ca.uhn.fhir.jpa.dao.mdm.MdmExpansionCacheSvc;
import ca.uhn.fhir.util.ExtensionUtil; import ca.uhn.fhir.util.ExtensionUtil;
import ca.uhn.fhir.util.HapiExtensions;
import ca.uhn.fhir.util.SearchParameterUtil; import ca.uhn.fhir.util.SearchParameterUtil;
import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.StringUtils;
import org.hl7.fhir.instance.model.api.IBaseExtension; import org.hl7.fhir.instance.model.api.IBaseExtension;
@ -46,7 +47,6 @@ import java.util.Optional;
*/ */
public class GoldenResourceAnnotatingProcessor implements ItemProcessor<List<IBaseResource>, List<IBaseResource>> { public class GoldenResourceAnnotatingProcessor implements ItemProcessor<List<IBaseResource>, List<IBaseResource>> {
private static final Logger ourLog = Logs.getBatchTroubleshootingLog(); private static final Logger ourLog = Logs.getBatchTroubleshootingLog();
public static final String ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL = "https://hapifhir.org/associated-patient-golden-resource/";
@Value("#{stepExecutionContext['resourceType']}") @Value("#{stepExecutionContext['resourceType']}")
private String myResourceType; private String myResourceType;
@ -114,7 +114,7 @@ public class GoldenResourceAnnotatingProcessor implements ItemProcessor<List<IBa
private void addGoldenResourceExtension(IBaseResource iBaseResource, String sourceResourceId) { private void addGoldenResourceExtension(IBaseResource iBaseResource, String sourceResourceId) {
String goldenResourceId = myMdmExpansionCacheSvc.getGoldenResourceId(sourceResourceId); String goldenResourceId = myMdmExpansionCacheSvc.getGoldenResourceId(sourceResourceId);
IBaseExtension<?, ?> extension = ExtensionUtil.getOrCreateExtension(iBaseResource, ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL); IBaseExtension<?, ?> extension = ExtensionUtil.getOrCreateExtension(iBaseResource, HapiExtensions.ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL);
if (!StringUtils.isBlank(goldenResourceId)) { if (!StringUtils.isBlank(goldenResourceId)) {
ExtensionUtil.setExtension(myContext, extension, "reference", prefixPatient(goldenResourceId)); ExtensionUtil.setExtension(myContext, extension, "reference", prefixPatient(goldenResourceId));
} else { } else {

12
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/bulk/BulkDataExportSvcImplR4Test.java
View File

@ -6,7 +6,6 @@ import ca.uhn.fhir.jpa.api.config.DaoConfig;
import ca.uhn.fhir.jpa.api.model.DaoMethodOutcome; import ca.uhn.fhir.jpa.api.model.DaoMethodOutcome;
import ca.uhn.fhir.jpa.batch.BatchJobsConfig; import ca.uhn.fhir.jpa.batch.BatchJobsConfig;
import ca.uhn.fhir.jpa.batch.api.IBatchJobSubmitter; import ca.uhn.fhir.jpa.batch.api.IBatchJobSubmitter;
import ca.uhn.fhir.jpa.batch.processors.GoldenResourceAnnotatingProcessor;
import ca.uhn.fhir.jpa.bulk.api.BulkDataExportOptions; import ca.uhn.fhir.jpa.bulk.api.BulkDataExportOptions;
import ca.uhn.fhir.jpa.bulk.api.IBulkDataExportSvc; import ca.uhn.fhir.jpa.bulk.api.IBulkDataExportSvc;
import ca.uhn.fhir.jpa.bulk.job.BulkExportJobParametersBuilder; import ca.uhn.fhir.jpa.bulk.job.BulkExportJobParametersBuilder;
@ -20,12 +19,11 @@ import ca.uhn.fhir.jpa.entity.BulkExportCollectionEntity;
import ca.uhn.fhir.jpa.entity.BulkExportCollectionFileEntity; import ca.uhn.fhir.jpa.entity.BulkExportCollectionFileEntity;
import ca.uhn.fhir.jpa.entity.BulkExportJobEntity; import ca.uhn.fhir.jpa.entity.BulkExportJobEntity;
import ca.uhn.fhir.jpa.entity.MdmLink; import ca.uhn.fhir.jpa.entity.MdmLink;
import ca.uhn.fhir.jpa.model.util.JpaConstants;
import ca.uhn.fhir.mdm.api.MdmLinkSourceEnum; import ca.uhn.fhir.mdm.api.MdmLinkSourceEnum;
import ca.uhn.fhir.mdm.api.MdmMatchResultEnum; import ca.uhn.fhir.mdm.api.MdmMatchResultEnum;
import ca.uhn.fhir.rest.api.Constants; import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException; import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.util.HapiExtensions;
import ca.uhn.fhir.util.UrlUtil; import ca.uhn.fhir.util.UrlUtil;
import com.google.common.base.Charsets; import com.google.common.base.Charsets;
import com.google.common.collect.Sets; import com.google.common.collect.Sets;
@ -40,7 +38,6 @@ import org.hl7.fhir.r4.model.Group;
import org.hl7.fhir.r4.model.Immunization; import org.hl7.fhir.r4.model.Immunization;
import org.hl7.fhir.r4.model.InstantType; import org.hl7.fhir.r4.model.InstantType;
import org.hl7.fhir.r4.model.Observation; import org.hl7.fhir.r4.model.Observation;
import org.hl7.fhir.r4.model.Parameters;
import org.hl7.fhir.r4.model.Patient; import org.hl7.fhir.r4.model.Patient;
import org.hl7.fhir.r4.model.Reference; import org.hl7.fhir.r4.model.Reference;
import org.junit.jupiter.api.Test; import org.junit.jupiter.api.Test;
@ -56,7 +53,6 @@ import org.springframework.batch.core.explore.JobExplorer;
import org.springframework.beans.factory.annotation.Autowired; import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.annotation.Qualifier; import org.springframework.beans.factory.annotation.Qualifier;
import java.io.IOException;
import java.util.Arrays; import java.util.Arrays;
import java.util.Collection; import java.util.Collection;
import java.util.Date; import java.util.Date;
@ -668,15 +664,15 @@ public class BulkDataExportSvcImplR4Test extends BaseJpaR4Test {
String nextContents = getBinaryContents(jobInfo, 0); String nextContents = getBinaryContents(jobInfo, 0);
assertThat(jobInfo.getFiles().get(0).getResourceType(), is(equalTo("Immunization"))); assertThat(jobInfo.getFiles().get(0).getResourceType(), is(equalTo("Immunization")));
assertThat(nextContents, is(containsString(GoldenResourceAnnotatingProcessor.ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL))); assertThat(nextContents, is(containsString(HapiExtensions.ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL)));
nextContents = getBinaryContents(jobInfo, 1); nextContents = getBinaryContents(jobInfo, 1);
assertThat(jobInfo.getFiles().get(1).getResourceType(), is(equalTo("Observation"))); assertThat(jobInfo.getFiles().get(1).getResourceType(), is(equalTo("Observation")));
assertThat(nextContents, is(containsString(GoldenResourceAnnotatingProcessor.ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL))); assertThat(nextContents, is(containsString(HapiExtensions.ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL)));
nextContents = getBinaryContents(jobInfo, 2); nextContents = getBinaryContents(jobInfo, 2);
assertThat(jobInfo.getFiles().get(2).getResourceType(), is(equalTo("Patient"))); assertThat(jobInfo.getFiles().get(2).getResourceType(), is(equalTo("Patient")));
assertThat(nextContents, is(containsString(GoldenResourceAnnotatingProcessor.ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL))); assertThat(nextContents, is(containsString(HapiExtensions.ASSOCIATED_GOLDEN_RESOURCE_EXTENSION_URL)));
} }
@Test @Test