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Start working on JPA subscriptions

This commit is contained in:
jamesagnew 2015-09-21 09:08:19 -04:00
parent 8fee057de3
commit 04c2cce13f
29 changed files with 988 additions and 287 deletions
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90
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/UrlUtil.java
View File

@ -6,6 +6,9 @@ import java.net.URL;
import java.net.URLDecoder; import java.net.URLDecoder;
import java.net.URLEncoder; import java.net.URLEncoder;
import ca.uhn.fhir.rest.server.Constants;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
/* /*
* #%L * #%L
* HAPI FHIR - Core Library * HAPI FHIR - Core Library
@ -159,4 +162,91 @@ public class UrlUtil {
} }
} }
//@formatter:off
/**
* Parse a URL in one of the following forms:
* <ul>
* <li>[Resource Type]?[Search Params]
* <li>[Resource Type]/[Resource ID]
* <li>[Resource Type]/[Resource ID]/_history/[Version ID]
* </ul>
*/
//@formatter:on
public static UrlParts parseUrl(String theUrl) {
UrlParts retVal = new UrlParts();
int nextStart = 0;
boolean nextIsHistory = false;
for (int idx = 0; idx < theUrl.length(); idx++) {
char nextChar = theUrl.charAt(idx);
boolean atEnd = (idx + 1) == theUrl.length();
if (nextChar == '?' || nextChar == '/' || atEnd) {
int endIdx = atEnd ? idx + 1 : idx;
String nextSubstring = theUrl.substring(nextStart, endIdx);
if (retVal.getResourceType() == null) {
retVal.setResourceType(nextSubstring);
} else if (retVal.getResourceId() == null) {
retVal.setResourceId(nextSubstring);
} else if (nextIsHistory) {
retVal.setVersionId(nextSubstring);
} else {
if (nextSubstring.equals(Constants.URL_TOKEN_HISTORY)) {
nextIsHistory = true;
} else {
throw new InvalidRequestException("Invalid FHIR resource URL: " + theUrl);
}
}
if (nextChar == '?') {
if (theUrl.length() > idx + 1) {
retVal.setParams(theUrl.substring(idx + 1, theUrl.length()));
}
break;
}
nextStart = idx + 1;
}
}
return retVal;
}
public static class UrlParts {
private String myParams;
private String myResourceId;
private String myResourceType;
private String myVersionId;
public String getParams() {
return myParams;
}
public String getResourceId() {
return myResourceId;
}
public String getResourceType() {
return myResourceType;
}
public String getVersionId() {
return myVersionId;
}
public void setParams(String theParams) {
myParams = theParams;
}
public void setResourceId(String theResourceId) {
myResourceId = theResourceId;
}
public void setResourceType(String theResourceType) {
myResourceType = theResourceType;
}
public void setVersionId(String theVersionId) {
myVersionId = theVersionId;
}
}
} }

139
hapi-fhir-jpaserver-base/pom.xml
View File

@ -284,72 +284,6 @@
<runOrder>alphabetical</runOrder> <runOrder>alphabetical</runOrder>
</configuration> </configuration>
</plugin> </plugin>
<plugin>
<groupId>de.juplo</groupId>
<artifactId>hibernate4-maven-plugin</artifactId>
<configuration>
<force>true</force>
<target>SCRIPT</target>
<skip>${skip-hib4}</skip>
</configuration>
<!--
This needs to be uncommented in order for this plugin to work with
Hibernate 4.3+ (as of hibernate4-maven-plugin version 1.0.5)
<dependencies>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>${hibernate_version}</version>
</dependency>
</dependencies>
-->
<executions>
<execution>
<id>o10g</id>
<goals>
<goal>export</goal>
</goals>
<phase>test</phase>
<configuration>
<hibernateDialect>org.hibernate.dialect.Oracle10gDialect</hibernateDialect>
<outputFile>${project.build.directory}/schema_oracle_10g.sql</outputFile>
</configuration>
</execution>
<execution>
<id>derby</id>
<goals>
<goal>export</goal>
</goals>
<phase>test</phase>
<configuration>
<hibernateDialect>org.hibernate.dialect.DerbyTenSevenDialect</hibernateDialect>
<outputFile>${project.build.directory}/schema_derby.sql</outputFile>
</configuration>
</execution>
<execution>
<id>hsql</id>
<goals>
<goal>export</goal>
</goals>
<phase>test</phase>
<configuration>
<hibernateDialect>org.hibernate.dialect.HSQLDialect</hibernateDialect>
<outputFile>${project.build.directory}/schema_hsql.sql</outputFile>
</configuration>
</execution>
<execution>
<id>mysql5</id>
<goals>
<goal>export</goal>
</goals>
<phase>test</phase>
<configuration>
<hibernateDialect>org.hibernate.dialect.MySQL5Dialect</hibernateDialect>
<outputFile>${project.build.directory}/schema_mysql_5.sql</outputFile>
</configuration>
</execution>
</executions>
</plugin>
<plugin> <plugin>
<groupId>ca.uhn.hapi.fhir</groupId> <groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId> <artifactId>hapi-tinder-plugin</artifactId>
@ -427,6 +361,79 @@
<skip-hib4>true</skip-hib4> <skip-hib4>true</skip-hib4>
</properties> </properties>
</profile> </profile>
<profile>
<id>DIST</id>
<build>
<plugins>
<plugin>
<groupId>de.juplo</groupId>
<artifactId>hibernate4-maven-plugin</artifactId>
<configuration>
<force>true</force>
<target>SCRIPT</target>
<skip>${skip-hib4}</skip>
</configuration>
<!--
This needs to be uncommented in order for this plugin to work with
Hibernate 4.3+ (as of hibernate4-maven-plugin version 1.0.5)
<dependencies>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>${hibernate_version}</version>
</dependency>
</dependencies>
-->
<executions>
<execution>
<id>o10g</id>
<goals>
<goal>export</goal>
</goals>
<phase>test</phase>
<configuration>
<hibernateDialect>org.hibernate.dialect.Oracle10gDialect</hibernateDialect>
<outputFile>${project.build.directory}/schema_oracle_10g.sql</outputFile>
</configuration>
</execution>
<execution>
<id>derby</id>
<goals>
<goal>export</goal>
</goals>
<phase>test</phase>
<configuration>
<hibernateDialect>org.hibernate.dialect.DerbyTenSevenDialect</hibernateDialect>
<outputFile>${project.build.directory}/schema_derby.sql</outputFile>
</configuration>
</execution>
<execution>
<id>hsql</id>
<goals>
<goal>export</goal>
</goals>
<phase>test</phase>
<configuration>
<hibernateDialect>org.hibernate.dialect.HSQLDialect</hibernateDialect>
<outputFile>${project.build.directory}/schema_hsql.sql</outputFile>
</configuration>
</execution>
<execution>
<id>mysql5</id>
<goals>
<goal>export</goal>
</goals>
<phase>test</phase>
<configuration>
<hibernateDialect>org.hibernate.dialect.MySQL5Dialect</hibernateDialect>
<outputFile>${project.build.directory}/schema_mysql_5.sql</outputFile>
</configuration>
</execution>
</executions>
</plugin>
</plugins>
</build>
</profile>
</profiles> </profiles>
</project> </project>

97
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirDao.java
View File

@ -87,6 +87,7 @@ import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamUri;
import ca.uhn.fhir.jpa.entity.ResourceLink; import ca.uhn.fhir.jpa.entity.ResourceLink;
import ca.uhn.fhir.jpa.entity.ResourceTable; import ca.uhn.fhir.jpa.entity.ResourceTable;
import ca.uhn.fhir.jpa.entity.ResourceTag; import ca.uhn.fhir.jpa.entity.ResourceTag;
import ca.uhn.fhir.jpa.entity.SubscriptionCandidateResource;
import ca.uhn.fhir.jpa.entity.TagDefinition; import ca.uhn.fhir.jpa.entity.TagDefinition;
import ca.uhn.fhir.jpa.entity.TagTypeEnum; import ca.uhn.fhir.jpa.entity.TagTypeEnum;
import ca.uhn.fhir.jpa.util.StopWatch; import ca.uhn.fhir.jpa.util.StopWatch;
@ -520,7 +521,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
} }
throw e; throw e;
} }
IResource resource = (IResource) toResource(type.getImplementingClass(), next); IResource resource = (IResource) toResource(type.getImplementingClass(), next, true);
retVal.add(resource); retVal.add(resource);
} }
return retVal; return retVal;
@ -558,12 +559,6 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
} }
protected void populateResourceIntoEntity(IResource theResource, ResourceTable theEntity) { protected void populateResourceIntoEntity(IResource theResource, ResourceTable theEntity) {
if (theEntity.getPublished().isEmpty()) {
theEntity.setPublished(new Date());
}
theEntity.setUpdated(new Date());
theEntity.setResourceType(toResourceName(theResource)); theEntity.setResourceType(toResourceName(theResource));
List<BaseResourceReferenceDt> refs = myContext.newTerser().getAllPopulatedChildElementsOfType(theResource, BaseResourceReferenceDt.class); List<BaseResourceReferenceDt> refs = myContext.newTerser().getAllPopulatedChildElementsOfType(theResource, BaseResourceReferenceDt.class);
@ -936,13 +931,13 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
return retVal; return retVal;
} }
protected IBaseResource toResource(BaseHasResource theEntity) { protected IBaseResource toResource(BaseHasResource theEntity, boolean theForHistoryOperation) {
RuntimeResourceDefinition type = myContext.getResourceDefinition(theEntity.getResourceType()); RuntimeResourceDefinition type = myContext.getResourceDefinition(theEntity.getResourceType());
return toResource(type.getImplementingClass(), theEntity); return toResource(type.getImplementingClass(), theEntity, theForHistoryOperation);
} }
@SuppressWarnings("unchecked") @SuppressWarnings("unchecked")
protected <R extends IBaseResource> R toResource(Class<R> theResourceType, BaseHasResource theEntity) { protected <R extends IBaseResource> R toResource(Class<R> theResourceType, BaseHasResource theEntity, boolean theForHistoryOperation) {
String resourceText = null; String resourceText = null;
switch (theEntity.getEncoding()) { switch (theEntity.getEncoding()) {
case JSON: case JSON:
@ -983,7 +978,21 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
res = (IResource) myContext.getResourceDefinition(theResourceType).newInstance(); res = (IResource) myContext.getResourceDefinition(theResourceType).newInstance();
retVal = (R) res; retVal = (R) res;
ResourceMetadataKeyEnum.DELETED_AT.put(res, new InstantDt(theEntity.getDeleted())); ResourceMetadataKeyEnum.DELETED_AT.put(res, new InstantDt(theEntity.getDeleted()));
ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.put(res, BundleEntryTransactionMethodEnum.DELETE); if (theForHistoryOperation) {
ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.put(res, BundleEntryTransactionMethodEnum.DELETE);
}
} else if (theForHistoryOperation) {
/*
* If the create and update times match, this was when the resource was created
* so we should mark it as a POST. Otherwise, it's a PUT.
*/
Date published = theEntity.getPublished().getValue();
Date updated = theEntity.getUpdated().getValue();
if (published.equals(updated)) {
ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.put(res, BundleEntryTransactionMethodEnum.POST);
} else {
ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.put(res, BundleEntryTransactionMethodEnum.PUT);
}
} }
res.setId(theEntity.getIdDt()); res.setId(theEntity.getIdDt());
@ -1063,25 +1072,28 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
} }
} }
protected ResourceTable updateEntity(final IResource theResource, ResourceTable entity, boolean theUpdateHistory, Date theDeletedTimestampOrNull) { protected ResourceTable updateEntity(final IResource theResource, ResourceTable entity, boolean theUpdateHistory, Date theDeletedTimestampOrNull, Date theUpdateTime) {
return updateEntity(theResource, entity, theUpdateHistory, theDeletedTimestampOrNull, true, true); return updateEntity(theResource, entity, theUpdateHistory, theDeletedTimestampOrNull, true, true, theUpdateTime);
} }
@SuppressWarnings("unchecked") @SuppressWarnings("unchecked")
protected ResourceTable updateEntity(final IResource theResource, ResourceTable theEntity, boolean theUpdateHistory, Date theDeletedTimestampOrNull, boolean thePerformIndexing, boolean theUpdateVersion) { protected ResourceTable updateEntity(final IResource theResource, ResourceTable theEntity, boolean theUpdateHistory, Date theDeletedTimestampOrNull, boolean thePerformIndexing, boolean theUpdateVersion, Date theUpdateTime) {
if (theEntity.getPublished() == null) {
theEntity.setPublished(new Date());
}
/*
* This should be the very first thing..
*/
if (theResource != null) { if (theResource != null) {
validateResourceForStorage((T) theResource); validateResourceForStorage((T) theResource, theEntity);
String resourceType = myContext.getResourceDefinition(theResource).getName(); String resourceType = myContext.getResourceDefinition(theResource).getName();
if (isNotBlank(theEntity.getResourceType()) && !theEntity.getResourceType().equals(resourceType)) { if (isNotBlank(theEntity.getResourceType()) && !theEntity.getResourceType().equals(resourceType)) {
throw new UnprocessableEntityException("Existing resource ID[" + theEntity.getIdDt().toUnqualifiedVersionless() + "] is of type[" + theEntity.getResourceType() + "] - Cannot update with [" + resourceType + "]"); throw new UnprocessableEntityException("Existing resource ID[" + theEntity.getIdDt().toUnqualifiedVersionless() + "] is of type[" + theEntity.getResourceType() + "] - Cannot update with [" + resourceType + "]");
} }
} }
if (theEntity.getPublished() == null) {
theEntity.setPublished(theUpdateTime);
}
if (theUpdateHistory) { if (theUpdateHistory) {
final ResourceHistoryTable historyEntry = theEntity.toHistory(); final ResourceHistoryTable historyEntry = theEntity.toHistory();
myEntityManager.persist(historyEntry); myEntityManager.persist(historyEntry);
@ -1159,7 +1171,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
links = extractResourceLinks(theEntity, theResource); links = extractResourceLinks(theEntity, theResource);
populateResourceIntoEntity(theResource, theEntity); populateResourceIntoEntity(theResource, theEntity);
theEntity.setUpdated(new Date()); theEntity.setUpdated(theUpdateTime);
theEntity.setLanguage(theResource.getLanguage().getValue()); theEntity.setLanguage(theResource.getLanguage().getValue());
theEntity.setParamsString(stringParams); theEntity.setParamsString(stringParams);
theEntity.setParamsStringPopulated(stringParams.isEmpty() == false); theEntity.setParamsStringPopulated(stringParams.isEmpty() == false);
@ -1182,7 +1194,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
} else { } else {
populateResourceIntoEntity(theResource, theEntity); populateResourceIntoEntity(theResource, theEntity);
theEntity.setUpdated(new Date()); theEntity.setUpdated(theUpdateTime);
theEntity.setLanguage(theResource.getLanguage().getValue()); theEntity.setLanguage(theResource.getLanguage().getValue());
theEntity.setIndexStatus(null); theEntity.setIndexStatus(null);
@ -1197,8 +1209,24 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
myEntityManager.persist(theEntity.getForcedId()); myEntityManager.persist(theEntity.getForcedId());
} }
postPersist(theEntity, (T) theResource);
} else { } else {
theEntity = myEntityManager.merge(theEntity); theEntity = myEntityManager.merge(theEntity);
postUpdate(theEntity, (T) theResource);
}
/*
* When subscription is enabled, for each resource we store we also
* store a subscription candidate. These are examined by the subscription
* module and then deleted.
*/
if (myConfig.isSubscriptionEnabled() && thePerformIndexing) {
SubscriptionCandidateResource candidate = new SubscriptionCandidateResource();
candidate.setResource(theEntity);
candidate.setResourceVersion(theEntity.getVersion());
myEntityManager.persist(candidate);
} }
if (thePerformIndexing) { if (thePerformIndexing) {
@ -1289,6 +1317,30 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
return theEntity; return theEntity;
} }
/**
* Subclasses may override to provide behaviour. Called when a resource has been inserved into the database for the
* first time.
*
* @param theEntity
* The resource
* @param theResource The resource being persisted
*/
protected void postUpdate(ResourceTable theEntity, T theResource) {
// nothing
}
/**
* Subclasses may override to provide behaviour. Called when a resource has been inserved into the database for the
* first time.
*
* @param theEntity
* The resource
* @param theResource The resource being persisted
*/
protected void postPersist(ResourceTable theEntity, T theResource) {
// nothing
}
/** /**
* This method is invoked immediately before storing a new resource, or an update to an existing resource to allow * This method is invoked immediately before storing a new resource, or an update to an existing resource to allow
* the DAO to ensure that it is valid for persistence. By default, checks for the "subsetted" tag and rejects * the DAO to ensure that it is valid for persistence. By default, checks for the "subsetted" tag and rejects
@ -1296,8 +1348,9 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
* *
* @param theResource * @param theResource
* The resource that is about to be persisted * The resource that is about to be persisted
* @param theEntityToSave TODO
*/ */
protected void validateResourceForStorage(T theResource) { protected void validateResourceForStorage(T theResource, ResourceTable theEntityToSave) {
IResource res = (IResource) theResource; IResource res = (IResource) theResource;
TagList tagList = ResourceMetadataKeyEnum.TAG_LIST.get(res); TagList tagList = ResourceMetadataKeyEnum.TAG_LIST.get(res);
if (tagList != null) { if (tagList != null) {

30
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDao.java
View File

@ -142,7 +142,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(BaseHapiFhirResourceDao.class); private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(BaseHapiFhirResourceDao.class);
@PersistenceContext(type = PersistenceContextType.TRANSACTION) @PersistenceContext(type = PersistenceContextType.TRANSACTION)
private EntityManager myEntityManager; protected EntityManager myEntityManager;
@Autowired @Autowired
private PlatformTransactionManager myPlatformTransactionManager; private PlatformTransactionManager myPlatformTransactionManager;
@ -1004,7 +1004,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
} }
} }
return doCreate(theResource, theIfNoneExist, thePerformIndexing); return doCreate(theResource, theIfNoneExist, thePerformIndexing, new Date());
} }
private Predicate createCompositeParamPart(CriteriaBuilder builder, Root<ResourceTable> from, RuntimeSearchParam left, IQueryParameterType leftValue) { private Predicate createCompositeParamPart(CriteriaBuilder builder, Root<ResourceTable> from, RuntimeSearchParam left, IQueryParameterType leftValue) {
@ -1268,7 +1268,8 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
ActionRequestDetails requestDetails = new ActionRequestDetails(theId, theId.getResourceType()); ActionRequestDetails requestDetails = new ActionRequestDetails(theId, theId.getResourceType());
notifyInterceptors(RestOperationTypeEnum.DELETE, requestDetails); notifyInterceptors(RestOperationTypeEnum.DELETE, requestDetails);
ResourceTable savedEntity = updateEntity(null, entity, true, new Date()); Date updateTime = new Date();
ResourceTable savedEntity = updateEntity(null, entity, true, updateTime, updateTime);
notifyWriteCompleted(); notifyWriteCompleted();
@ -1298,14 +1299,15 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
notifyInterceptors(RestOperationTypeEnum.DELETE, requestDetails); notifyInterceptors(RestOperationTypeEnum.DELETE, requestDetails);
// Perform delete // Perform delete
ResourceTable savedEntity = updateEntity(null, entity, true, new Date()); Date updateTime = new Date();
ResourceTable savedEntity = updateEntity(null, entity, true, updateTime, updateTime);
notifyWriteCompleted(); notifyWriteCompleted();
ourLog.info("Processed delete on {} in {}ms", theUrl, w.getMillisAndRestart()); ourLog.info("Processed delete on {} in {}ms", theUrl, w.getMillisAndRestart());
return toMethodOutcome(savedEntity, null); return toMethodOutcome(savedEntity, null);
} }
private DaoMethodOutcome doCreate(T theResource, String theIfNoneExist, boolean thePerformIndexing) { private DaoMethodOutcome doCreate(T theResource, String theIfNoneExist, boolean thePerformIndexing, Date theUpdateTime) {
StopWatch w = new StopWatch(); StopWatch w = new StopWatch();
preProcessResourceForStorage(theResource); preProcessResourceForStorage(theResource);
@ -1346,7 +1348,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
ActionRequestDetails requestDetails = new ActionRequestDetails(theResource.getId(), toResourceName(theResource), theResource); ActionRequestDetails requestDetails = new ActionRequestDetails(theResource.getId(), toResourceName(theResource), theResource);
notifyInterceptors(RestOperationTypeEnum.CREATE, requestDetails); notifyInterceptors(RestOperationTypeEnum.CREATE, requestDetails);
updateEntity(theResource, entity, false, null, thePerformIndexing, true); updateEntity(theResource, entity, false, null, thePerformIndexing, true, theUpdateTime);
DaoMethodOutcome outcome = toMethodOutcome(entity, theResource).setCreated(true); DaoMethodOutcome outcome = toMethodOutcome(entity, theResource).setCreated(true);
@ -1419,7 +1421,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
try { try {
BaseHasResource entity = readEntity(theId.toVersionless(), false); BaseHasResource entity = readEntity(theId.toVersionless(), false);
validateResourceType(entity); validateResourceType(entity);
currentTmp = toResource(myResourceType, entity); currentTmp = toResource(myResourceType, entity, true);
if (ResourceMetadataKeyEnum.UPDATED.get(currentTmp).after(end.getValue())) { if (ResourceMetadataKeyEnum.UPDATED.get(currentTmp).after(end.getValue())) {
currentTmp = null; currentTmp = null;
} }
@ -1496,7 +1498,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
if (retVal.size() == maxResults) { if (retVal.size() == maxResults) {
break; break;
} }
retVal.add(toResource(myResourceType, next)); retVal.add(toResource(myResourceType, next, true));
} }
return retVal; return retVal;
@ -1527,7 +1529,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
return retVal; return retVal;
} }
private void loadResourcesByPid(Collection<Long> theIncludePids, List<IBaseResource> theResourceListToPopulate, Set<Long> theRevIncludedPids) { private void loadResourcesByPid(Collection<Long> theIncludePids, List<IBaseResource> theResourceListToPopulate, Set<Long> theRevIncludedPids, boolean theForHistoryOperation) {
if (theIncludePids.isEmpty()) { if (theIncludePids.isEmpty()) {
return; return;
} }
@ -1546,7 +1548,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
for (ResourceTable next : q.getResultList()) { for (ResourceTable next : q.getResultList()) {
Class<? extends IBaseResource> resourceType = getContext().getResourceDefinition(next.getResourceType()).getImplementingClass(); Class<? extends IBaseResource> resourceType = getContext().getResourceDefinition(next.getResourceType()).getImplementingClass();
IResource resource = (IResource) toResource(resourceType, next); IResource resource = (IResource) toResource(resourceType, next, theForHistoryOperation);
Integer index = position.get(next.getId()); Integer index = position.get(next.getId());
if (index == null) { if (index == null) {
ourLog.warn("Got back unexpected resource PID {}", next.getId()); ourLog.warn("Got back unexpected resource PID {}", next.getId());
@ -1827,7 +1829,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
BaseHasResource entity = readEntity(theId); BaseHasResource entity = readEntity(theId);
validateResourceType(entity); validateResourceType(entity);
T retVal = toResource(myResourceType, entity); T retVal = toResource(myResourceType, entity, false);
InstantDt deleted = ResourceMetadataKeyEnum.DELETED_AT.get(retVal); InstantDt deleted = ResourceMetadataKeyEnum.DELETED_AT.get(retVal);
if (deleted != null && !deleted.isEmpty()) { if (deleted != null && !deleted.isEmpty()) {
@ -2065,7 +2067,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
// Execute the query and make sure we return distinct results // Execute the query and make sure we return distinct results
List<IBaseResource> retVal = new ArrayList<IBaseResource>(); List<IBaseResource> retVal = new ArrayList<IBaseResource>();
loadResourcesByPid(pidsSubList, retVal, revIncludedPids); loadResourcesByPid(pidsSubList, retVal, revIncludedPids, false);
return retVal; return retVal;
} }
@ -2381,7 +2383,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
if (resourceId.isIdPartValidLong()) { if (resourceId.isIdPartValidLong()) {
throw new InvalidRequestException(getContext().getLocalizer().getMessage(BaseHapiFhirResourceDao.class, "failedToCreateWithClientAssignedNumericId", theResource.getId().getIdPart())); throw new InvalidRequestException(getContext().getLocalizer().getMessage(BaseHapiFhirResourceDao.class, "failedToCreateWithClientAssignedNumericId", theResource.getId().getIdPart()));
} }
return doCreate(theResource, null, thePerformIndexing); return doCreate(theResource, null, thePerformIndexing, new Date());
} }
} }
@ -2398,7 +2400,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
notifyInterceptors(RestOperationTypeEnum.UPDATE, requestDetails); notifyInterceptors(RestOperationTypeEnum.UPDATE, requestDetails);
// Perform update // Perform update
ResourceTable savedEntity = updateEntity(theResource, entity, true, null, thePerformIndexing, true); ResourceTable savedEntity = updateEntity(theResource, entity, true, null, thePerformIndexing, true, new Date());
notifyWriteCompleted(); notifyWriteCompleted();

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirSystemDao.java
View File

@ -101,7 +101,7 @@ public abstract class BaseHapiFhirSystemDao<T> extends BaseHapiFhirDao<IBaseReso
for (ResourceTable resourceTable : resources) { for (ResourceTable resourceTable : resources) {
final IBaseResource resource; final IBaseResource resource;
try { try {
resource = toResource(resourceTable); resource = toResource(resourceTable, false);
} catch (DataFormatException e) { } catch (DataFormatException e) {
ourLog.warn("Failure parsing resource: {}", e.toString()); ourLog.warn("Failure parsing resource: {}", e.toString());
throw new UnprocessableEntityException(Long.toString(resourceTable.getId())); throw new UnprocessableEntityException(Long.toString(resourceTable.getId()));

43
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/DaoConfig.java
View File

@ -35,6 +35,7 @@ public class DaoConfig {
private int myIncludeLimit = 2000; private int myIncludeLimit = 2000;
private List<IServerInterceptor> myInterceptors; private List<IServerInterceptor> myInterceptors;
private ResourceEncodingEnum myResourceEncoding = ResourceEncodingEnum.JSONC; private ResourceEncodingEnum myResourceEncoding = ResourceEncodingEnum.JSONC;
private boolean mySubscriptionEnabled;
/** /**
* See {@link #setIncludeLimit(int)} * See {@link #setIncludeLimit(int)}
@ -64,6 +65,13 @@ public class DaoConfig {
return myResourceEncoding; return myResourceEncoding;
} }
/**
* See {@link #setSubscriptionEnabled(boolean)}
*/
public boolean isSubscriptionEnabled() {
return mySubscriptionEnabled;
}
public void setHardSearchLimit(int theHardSearchLimit) { public void setHardSearchLimit(int theHardSearchLimit) {
myHardSearchLimit = theHardSearchLimit; myHardSearchLimit = theHardSearchLimit;
} }
@ -90,12 +98,12 @@ public class DaoConfig {
* ID). * ID).
* </p> * </p>
*/ */
public void setInterceptors(List<IServerInterceptor> theInterceptors) { public void setInterceptors(IServerInterceptor... theInterceptor) {
myInterceptors = theInterceptors; if (theInterceptor == null || theInterceptor.length==0){
} setInterceptors(new ArrayList<IServerInterceptor>());
} else {
public void setResourceEncoding(ResourceEncodingEnum theResourceEncoding) { setInterceptors(Arrays.asList(theInterceptor));
myResourceEncoding = theResourceEncoding; }
} }
/** /**
@ -107,12 +115,23 @@ public class DaoConfig {
* ID). * ID).
* </p> * </p>
*/ */
public void setInterceptors(IServerInterceptor... theInterceptor) { public void setInterceptors(List<IServerInterceptor> theInterceptors) {
if (theInterceptor == null || theInterceptor.length==0){ myInterceptors = theInterceptors;
setInterceptors(new ArrayList<IServerInterceptor>()); }
} else {
setInterceptors(Arrays.asList(theInterceptor)); public void setResourceEncoding(ResourceEncodingEnum theResourceEncoding) {
} myResourceEncoding = theResourceEncoding;
}
/**
* Does this server support subscription? If set to true, the server
* will enable the subscription monitoring mode, which adds a bit of
* overhead. Note that if this is enabled, you must also include
* Spring task scanning to your XML config for the scheduled tasks
* used by the subscription module.
*/
public void setSubscriptionEnabled(boolean theSubscriptionEnabled) {
mySubscriptionEnabled = theSubscriptionEnabled;
} }
} }

5
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoQuestionnaireResponseDstu2.java
View File

@ -27,6 +27,7 @@ import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType; import org.hl7.fhir.instance.model.api.IIdType;
import ca.uhn.fhir.context.FhirContext; import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.entity.ResourceTable;
import ca.uhn.fhir.model.dstu2.resource.OperationOutcome; import ca.uhn.fhir.model.dstu2.resource.OperationOutcome;
import ca.uhn.fhir.model.dstu2.resource.Questionnaire; import ca.uhn.fhir.model.dstu2.resource.Questionnaire;
import ca.uhn.fhir.model.dstu2.resource.QuestionnaireResponse; import ca.uhn.fhir.model.dstu2.resource.QuestionnaireResponse;
@ -58,8 +59,8 @@ public class FhirResourceDaoQuestionnaireResponseDstu2 extends FhirResourceDaoDs
} }
@Override @Override
protected void validateResourceForStorage(QuestionnaireResponse theResource) { protected void validateResourceForStorage(QuestionnaireResponse theResource, ResourceTable theEntityToSave) {
super.validateResourceForStorage(theResource); super.validateResourceForStorage(theResource, theEntityToSave);
if (!myValidateResponses) { if (!myValidateResponses) {
return; return;
} }

195
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoSubscriptionDstu2.java Normal file
View File

@ -0,0 +1,195 @@
package ca.uhn.fhir.jpa.dao;
import static org.apache.commons.lang3.StringUtils.isBlank;
import java.util.Date;
import java.util.List;
import java.util.Set;
import javax.persistence.Query;
import javax.persistence.TypedQuery;
import org.apache.commons.lang3.Validate;
import org.apache.commons.lang3.time.DateUtils;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.springframework.scheduling.annotation.Scheduled;
import org.springframework.transaction.annotation.Propagation;
import org.springframework.transaction.annotation.Transactional;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.jpa.entity.ResourceTable;
import ca.uhn.fhir.jpa.entity.SubscriptionTable;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
import ca.uhn.fhir.model.dstu2.resource.Subscription;
import ca.uhn.fhir.model.dstu2.valueset.SubscriptionStatusEnum;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.rest.server.Constants;
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
import ca.uhn.fhir.util.UrlUtil;
import ca.uhn.fhir.util.UrlUtil.UrlParts;
public class FhirResourceDaoSubscriptionDstu2 extends FhirResourceDaoDstu2<Subscription>implements IFhirResourceDaoSubscription<Subscription> {
private static final ResourceMetadataKeyEnum<Object> ALLOW_STATUS_CHANGE = new ResourceMetadataKeyEnum<Object>(FhirResourceDaoSubscriptionDstu2.class.getName() + "_ALLOW_STATUS_CHANGE") {
private static final long serialVersionUID = 1;
@Override
public Object get(IResource theResource) {
throw new UnsupportedOperationException();
}
@Override
public void put(IResource theResource, Object theObject) {
throw new UnsupportedOperationException();
}
};
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoSubscriptionDstu2.class);
private void createSubscriptionTable(ResourceTable theEntity, Subscription theSubscription) {
SubscriptionTable subscriptionEntity = new SubscriptionTable();
subscriptionEntity.setSubscriptionResource(theEntity);
subscriptionEntity.setNextCheck(theEntity.getPublished().getValue());
subscriptionEntity.setNextCheckSince(theEntity.getPublished().getValue());
subscriptionEntity.setStatus(theSubscription.getStatusElement().getValueAsEnum());
myEntityManager.persist(subscriptionEntity);
}
@Override
public SubscriptionTable getSubscriptionByResourceId(long theSubscriptionResourceId) {
TypedQuery<SubscriptionTable> q = myEntityManager.createNamedQuery("Q_HFJ_SUBSCRIPTION_GET_BY_RES", SubscriptionTable.class);
q.setParameter("res_id", theSubscriptionResourceId);
return q.getSingleResult();
}
@Scheduled(fixedDelay = 10 * DateUtils.MILLIS_PER_SECOND)
@Transactional(propagation = Propagation.NOT_SUPPORTED)
@Override
public void pollForNewUndeliveredResources() {
if (getConfig().isSubscriptionEnabled() == false) {
return;
}
ourLog.trace("Beginning pollForNewUndeliveredResources()");
TypedQuery<SubscriptionTable> q = myEntityManager.createNamedQuery("Q_HFJ_SUBSCRIPTION_NEXT_CHECK", SubscriptionTable.class);
q.setParameter("next_check", new Date());
q.setParameter("status", SubscriptionStatusEnum.ACTIVE);
List<SubscriptionTable> subscriptions = q.getResultList();
}
@Override
protected void postPersist(ResourceTable theEntity, Subscription theSubscription) {
super.postPersist(theEntity, theSubscription);
createSubscriptionTable(theEntity, theSubscription);
}
@Override
public void setSubscriptionStatus(Long theResourceId, SubscriptionStatusEnum theStatus) {
Validate.notNull(theResourceId);
Validate.notNull(theStatus);
ResourceTable existing = readEntityLatestVersion(new IdDt("Subscription", theResourceId));
Subscription existingRes = toResource(Subscription.class, existing, false);
existingRes.getResourceMetadata().put(ALLOW_STATUS_CHANGE, new Object());
existingRes.setStatus(theStatus);
update(existingRes);
}
@Override
protected ResourceTable updateEntity(IResource theResource, ResourceTable theEntity, boolean theUpdateHistory, Date theDeletedTimestampOrNull, boolean thePerformIndexing, boolean theUpdateVersion, Date theUpdateTime) {
ResourceTable retVal = super.updateEntity(theResource, theEntity, theUpdateHistory, theDeletedTimestampOrNull, thePerformIndexing, theUpdateVersion, theUpdateTime);
Subscription resource = (Subscription) theResource;
Long resourceId = theEntity.getId();
if (theDeletedTimestampOrNull != null) {
Query q = myEntityManager.createNamedQuery("Q_HFJ_SUBSCRIPTION_DELETE");
q.setParameter("res_id", resourceId);
q.executeUpdate();
} else {
Query q = myEntityManager.createNamedQuery("Q_HFJ_SUBSCRIPTION_SET_STATUS");
q.setParameter("res_id", resourceId);
q.setParameter("status", resource.getStatusElement().getValueAsEnum());
if (q.executeUpdate() > 0) {
ourLog.info("Updated subscription status for subscription {} to {}", resourceId, resource.getStatusElement().getValueAsEnum());
} else {
createSubscriptionTable(retVal, resource);
}
}
return retVal;
}
@Override
protected void validateResourceForStorage(Subscription theResource, ResourceTable theEntityToSave) {
super.validateResourceForStorage(theResource, theEntityToSave);
String query = theResource.getCriteria();
if (isBlank(query)) {
throw new UnprocessableEntityException("Subscription.criteria must be populated");
}
int sep = query.indexOf('?');
if (sep <= 1) {
throw new UnprocessableEntityException("Subscription.criteria must be in the form \"{Resource Type}?[params]\"");
}
String resType = query.substring(0, sep);
if (resType.contains("/")) {
throw new UnprocessableEntityException("Subscription.criteria must be in the form \"{Resource Type}?[params]\"");
}
RuntimeResourceDefinition resDef;
try {
resDef = getContext().getResourceDefinition(resType);
} catch (DataFormatException e) {
throw new UnprocessableEntityException("Subscription.criteria contains invalid/unsupported resource type: " + resType);
}
IFhirResourceDao<? extends IBaseResource> dao = getDao(resDef.getImplementingClass());
if (dao == null) {
throw new UnprocessableEntityException("Subscription.criteria contains invalid/unsupported resource type: " + resDef);
}
// SearchParameterMap parsedUrl = translateMatchUrl(query, resDef);
if (theResource.getChannel().getType() == null) {
throw new UnprocessableEntityException("Subscription.channel.type must be populated on this server");
}
SubscriptionStatusEnum status = theResource.getStatusElement().getValueAsEnum();
Subscription existing = theEntityToSave.getEncoding() != null ? toResource(Subscription.class, theEntityToSave, false) : null;
if (status == null) {
// if (existing != null) {
// status = existing.getStatusElement().getValueAsEnum();
// theResource.setStatus(status);
// } else {
status = SubscriptionStatusEnum.REQUESTED;
theResource.setStatus(status);
// }
} else {
SubscriptionStatusEnum existingStatus = existing.getStatusElement().getValueAsEnum();
if (existingStatus != status) {
if (!theResource.getResourceMetadata().containsKey(ALLOW_STATUS_CHANGE)) {
throw new UnprocessableEntityException("Subscription.status can not be changed from " + existingStatus + " to " + status);
}
}
}
if (theEntityToSave.getId() == null) {
if (status != SubscriptionStatusEnum.REQUESTED) {
throw new UnprocessableEntityException("Subscription.status must be " + SubscriptionStatusEnum.REQUESTED.getCode() + " on a newly created subscription");
}
}
}
}

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoValueSetDstu2.java
View File

@ -60,7 +60,7 @@ public class FhirResourceDaoValueSetDstu2 extends FhirResourceDaoDstu2<ValueSet>
if (sourceEntity == null) { if (sourceEntity == null) {
throw new ResourceNotFoundException(theId); throw new ResourceNotFoundException(theId);
} }
ValueSet source = (ValueSet) toResource(sourceEntity); ValueSet source = (ValueSet) toResource(sourceEntity, false);
/* /*
* Add composed concepts * Add composed concepts

9
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirSystemDaoDstu1.java
View File

@ -104,6 +104,7 @@ public class FhirSystemDaoDstu1 extends BaseHapiFhirSystemDao<List<IResource>> {
OperationOutcome oo = new OperationOutcome(); OperationOutcome oo = new OperationOutcome();
retVal.add(oo); retVal.add(oo);
Date updateTime = new Date();
for (int resourceIdx = 0; resourceIdx < theResources.size(); resourceIdx++) { for (int resourceIdx = 0; resourceIdx < theResources.size(); resourceIdx++) {
IResource nextResource = theResources.get(resourceIdx); IResource nextResource = theResources.get(resourceIdx);
@ -160,6 +161,8 @@ public class FhirSystemDaoDstu1 extends BaseHapiFhirSystemDao<List<IResource>> {
if (entity == null) { if (entity == null) {
nextResouceOperationOut = BundleEntryTransactionMethodEnum.POST; nextResouceOperationOut = BundleEntryTransactionMethodEnum.POST;
entity = toEntity(nextResource); entity = toEntity(nextResource);
entity.setUpdated(updateTime);
entity.setPublished(updateTime);
if (nextId.isEmpty() == false && "cid:".equals(nextId.getBaseUrl())) { if (nextId.isEmpty() == false && "cid:".equals(nextId.getBaseUrl())) {
ourLog.debug("Resource in transaction has ID[{}], will replace with server assigned ID", nextId.getIdPart()); ourLog.debug("Resource in transaction has ID[{}], will replace with server assigned ID", nextId.getIdPart());
} else if (nextResouceOperationIn == BundleEntryTransactionMethodEnum.POST) { } else if (nextResouceOperationIn == BundleEntryTransactionMethodEnum.POST) {
@ -170,7 +173,7 @@ public class FhirSystemDaoDstu1 extends BaseHapiFhirSystemDao<List<IResource>> {
if (candidateMatches.size() == 1) { if (candidateMatches.size() == 1) {
ourLog.debug("Resource with match URL [{}] already exists, will be NOOP", matchUrl); ourLog.debug("Resource with match URL [{}] already exists, will be NOOP", matchUrl);
BaseHasResource existingEntity = loadFirstEntityFromCandidateMatches(candidateMatches); BaseHasResource existingEntity = loadFirstEntityFromCandidateMatches(candidateMatches);
IResource existing = (IResource) toResource(existingEntity); IResource existing = (IResource) toResource(existingEntity, false);
persistedResources.add(null); persistedResources.add(null);
retVal.add(existing); retVal.add(existing);
continue; continue;
@ -262,11 +265,11 @@ public class FhirSystemDaoDstu1 extends BaseHapiFhirSystemDao<List<IResource>> {
InstantDt deletedInstantOrNull = ResourceMetadataKeyEnum.DELETED_AT.get(resource); InstantDt deletedInstantOrNull = ResourceMetadataKeyEnum.DELETED_AT.get(resource);
Date deletedTimestampOrNull = deletedInstantOrNull != null ? deletedInstantOrNull.getValue() : null; Date deletedTimestampOrNull = deletedInstantOrNull != null ? deletedInstantOrNull.getValue() : null;
if (deletedInstantOrNull == null && ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get(resource) == BundleEntryTransactionMethodEnum.DELETE) { if (deletedInstantOrNull == null && ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get(resource) == BundleEntryTransactionMethodEnum.DELETE) {
deletedTimestampOrNull = new Date(); deletedTimestampOrNull = updateTime;
ResourceMetadataKeyEnum.DELETED_AT.put(resource, new InstantDt(deletedTimestampOrNull)); ResourceMetadataKeyEnum.DELETED_AT.put(resource, new InstantDt(deletedTimestampOrNull));
} }
updateEntity(resource, table, table.getId() != null, deletedTimestampOrNull); updateEntity(resource, table, table.getId() != null, deletedTimestampOrNull, updateTime);
} }
long delay = System.currentTimeMillis() - start; long delay = System.currentTimeMillis() - start;

189
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirSystemDaoDstu2.java
View File

@ -19,7 +19,9 @@ package ca.uhn.fhir.jpa.dao;
* limitations under the License. * limitations under the License.
* #L% * #L%
*/ */
import static org.apache.commons.lang3.StringUtils.*; import static org.apache.commons.lang3.StringUtils.defaultString;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import java.util.Date; import java.util.Date;
import java.util.HashMap; import java.util.HashMap;
@ -64,6 +66,8 @@ import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException; import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor.ActionRequestDetails; import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor.ActionRequestDetails;
import ca.uhn.fhir.util.FhirTerser; import ca.uhn.fhir.util.FhirTerser;
import ca.uhn.fhir.util.UrlUtil;
import ca.uhn.fhir.util.UrlUtil.UrlParts;
public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> { public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirSystemDaoDstu2.class); private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirSystemDaoDstu2.class);
@ -92,8 +96,8 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
resp.addEntry().setResource(ooResp); resp.addEntry().setResource(ooResp);
/* /*
* For batch, we handle each entry as a mini-transaction in its own * For batch, we handle each entry as a mini-transaction in its own database transaction so that if one fails, it
* database transaction so that if one fails, it doesn't prevent others * doesn't prevent others
*/ */
for (final Entry nextRequestEntry : theRequest.getEntry()) { for (final Entry nextRequestEntry : theRequest.getEntry()) {
@ -118,8 +122,8 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
Entry subResponseEntry = nextResponseBundle.getEntry().get(0); Entry subResponseEntry = nextResponseBundle.getEntry().get(0);
resp.addEntry(subResponseEntry); resp.addEntry(subResponseEntry);
/* /*
* If the individual entry didn't have a resource in its response, bring the * If the individual entry didn't have a resource in its response, bring the sub-transaction's
* sub-transaction's OperationOutcome across so the client can see it * OperationOutcome across so the client can see it
*/ */
if (subResponseEntry.getResource() == null) { if (subResponseEntry.getResource() == null) {
subResponseEntry.setResource(nextResponseBundle.getEntry().get(0).getResource()); subResponseEntry.setResource(nextResponseBundle.getEntry().get(0).getResource());
@ -167,75 +171,6 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
return retVal; return retVal;
} }
private UrlParts parseUrl(String theAction, String theUrl) {
UrlParts retVal = new UrlParts();
//@formatter:off
/*
* We assume that the URL passed in is in one of the following forms:
* [Resource Type]?[Search Params]
* [Resource Type]/[Resource ID]
* [Resource Type]/[Resource ID]/_history/[Version ID]
*/
//@formatter:on
int nextStart = 0;
boolean nextIsHistory = false;
for (int idx = 0; idx < theUrl.length(); idx++) {
char nextChar = theUrl.charAt(idx);
boolean atEnd = (idx + 1) == theUrl.length();
if (nextChar == '?' || nextChar == '/' || atEnd) {
int endIdx = atEnd ? idx + 1 : idx;
String nextSubstring = theUrl.substring(nextStart, endIdx);
if (retVal.getResourceType() == null) {
retVal.setResourceType(nextSubstring);
} else if (retVal.getResourceId() == null) {
retVal.setResourceId(nextSubstring);
} else if (nextIsHistory) {
retVal.setVersionId(nextSubstring);
} else {
if (nextSubstring.equals(Constants.URL_TOKEN_HISTORY)) {
nextIsHistory = true;
} else {
String msg = getContext().getLocalizer().getMessage(BaseHapiFhirSystemDao.class, "transactionInvalidUrl", theAction, theUrl);
throw new InvalidRequestException(msg);
}
}
if (nextChar == '?') {
if (theUrl.length() > idx + 1) {
retVal.setParams(theUrl.substring(idx + 1, theUrl.length()));
}
break;
}
nextStart = idx + 1;
}
}
RuntimeResourceDefinition resType;
try {
resType = getContext().getResourceDefinition(retVal.getResourceType());
} catch (DataFormatException e) {
String msg = getContext().getLocalizer().getMessage(BaseHapiFhirSystemDao.class, "transactionInvalidUrl", theAction, theUrl);
throw new InvalidRequestException(msg);
}
IFhirResourceDao<? extends IBaseResource> dao = null;
if (resType != null) {
dao = getDao(resType.getImplementingClass());
}
if (dao == null) {
String msg = getContext().getLocalizer().getMessage(BaseHapiFhirSystemDao.class, "transactionInvalidUrl", theAction, theUrl);
throw new InvalidRequestException(msg);
}
retVal.setDao(dao);
if (retVal.getResourceId() == null && retVal.getParams() == null) {
String msg = getContext().getLocalizer().getMessage(BaseHapiFhirSystemDao.class, "transactionInvalidUrl", theAction, theUrl);
throw new InvalidRequestException(msg);
}
return retVal;
}
@Transactional(propagation = Propagation.REQUIRED) @Transactional(propagation = Propagation.REQUIRED)
@Override @Override
public Bundle transaction(Bundle theRequest) { public Bundle transaction(Bundle theRequest) {
@ -265,6 +200,7 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
ourLog.info("Beginning {} with {} resources", theActionName, theRequest.getEntry().size()); ourLog.info("Beginning {} with {} resources", theActionName, theRequest.getEntry().size());
long start = System.currentTimeMillis(); long start = System.currentTimeMillis();
Date updateTime = new Date();
Set<IdDt> allIds = new LinkedHashSet<IdDt>(); Set<IdDt> allIds = new LinkedHashSet<IdDt>();
Map<IdDt, IdDt> idSubstitutions = new HashMap<IdDt, IdDt>(); Map<IdDt, IdDt> idSubstitutions = new HashMap<IdDt, IdDt>();
@ -330,11 +266,12 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
// DELETE // DELETE
Entry newEntry = response.addEntry(); Entry newEntry = response.addEntry();
String url = extractTransactionUrlOrThrowException(nextEntry, verb); String url = extractTransactionUrlOrThrowException(nextEntry, verb);
UrlParts parts = parseUrl(verb.getCode(), url); UrlParts parts = UrlUtil.parseUrl(url);
ca.uhn.fhir.jpa.dao.IFhirResourceDao<? extends IBaseResource> dao = toDao(parts, verb.getCode(), url);
if (parts.getResourceId() != null) { if (parts.getResourceId() != null) {
parts.getDao().delete(new IdDt(parts.getResourceType(), parts.getResourceId())); dao.delete(new IdDt(parts.getResourceType(), parts.getResourceId()));
} else { } else {
parts.getDao().deleteByUrl(parts.getResourceType() + '?' + parts.getParams()); dao.deleteByUrl(parts.getResourceType() + '?' + parts.getParams());
} }
newEntry.getResponse().setStatus(toStatusString(Constants.STATUS_HTTP_204_NO_CONTENT)); newEntry.getResponse().setStatus(toStatusString(Constants.STATUS_HTTP_204_NO_CONTENT));
@ -350,7 +287,7 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
String url = extractTransactionUrlOrThrowException(nextEntry, verb); String url = extractTransactionUrlOrThrowException(nextEntry, verb);
UrlParts parts = parseUrl(verb.getCode(), url); UrlParts parts = UrlUtil.parseUrl(url);
if (isNotBlank(parts.getResourceId())) { if (isNotBlank(parts.getResourceId())) {
res.setId(new IdDt(parts.getResourceType(), parts.getResourceId())); res.setId(new IdDt(parts.getResourceType(), parts.getResourceId()));
outcome = resourceDao.update(res, null, false); outcome = resourceDao.update(res, null, false);
@ -365,10 +302,10 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
case GET: { case GET: {
// SEARCH/READ/VREAD // SEARCH/READ/VREAD
String url = extractTransactionUrlOrThrowException(nextEntry, verb); String url = extractTransactionUrlOrThrowException(nextEntry, verb);
UrlParts parts = parseUrl(verb.getCode(), url); UrlParts parts = UrlUtil.parseUrl(url);
@SuppressWarnings("rawtypes") @SuppressWarnings("rawtypes")
IFhirResourceDao resourceDao = parts.getDao(); IFhirResourceDao dao = toDao(parts, verb.getCode(), url);
String ifNoneMatch = nextEntry.getRequest().getIfNoneMatch(); String ifNoneMatch = nextEntry.getRequest().getIfNoneMatch();
if (isNotBlank(ifNoneMatch)) { if (isNotBlank(ifNoneMatch)) {
@ -382,9 +319,9 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
if (isNotBlank(ifNoneMatch)) { if (isNotBlank(ifNoneMatch)) {
throw new InvalidRequestException("Unable to perform vread on '" + url + "' with ifNoneMatch also set. Do not include a version in the URL to perform a conditional read."); throw new InvalidRequestException("Unable to perform vread on '" + url + "' with ifNoneMatch also set. Do not include a version in the URL to perform a conditional read.");
} }
found = (IResource) resourceDao.read(new IdDt(parts.getResourceType(), parts.getResourceId(), parts.getVersionId())); found = (IResource) dao.read(new IdDt(parts.getResourceType(), parts.getResourceId(), parts.getVersionId()));
} else { } else {
found = (IResource) resourceDao.read(new IdDt(parts.getResourceType(), parts.getResourceId())); found = (IResource) dao.read(new IdDt(parts.getResourceType(), parts.getResourceId()));
if (isNotBlank(ifNoneMatch) && ifNoneMatch.equals(found.getId().getVersionIdPart())) { if (isNotBlank(ifNoneMatch) && ifNoneMatch.equals(found.getId().getVersionIdPart())) {
notChanged = true; notChanged = true;
} }
@ -402,9 +339,9 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
resp.setStatus(toStatusString(Constants.STATUS_HTTP_304_NOT_MODIFIED)); resp.setStatus(toStatusString(Constants.STATUS_HTTP_304_NOT_MODIFIED));
} }
} else if (parts.getParams() != null) { } else if (parts.getParams() != null) {
RuntimeResourceDefinition def = getContext().getResourceDefinition(parts.getDao().getResourceType()); RuntimeResourceDefinition def = getContext().getResourceDefinition(dao.getResourceType());
SearchParameterMap params = translateMatchUrl(url, def); SearchParameterMap params = translateMatchUrl(url, def);
IBundleProvider bundle = parts.getDao().search(params); IBundleProvider bundle = dao.search(params);
Bundle searchBundle = new Bundle(); Bundle searchBundle = new Bundle();
searchBundle.setTotal(bundle.size()); searchBundle.setTotal(bundle.size());
@ -453,7 +390,7 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
InstantDt deletedInstantOrNull = ResourceMetadataKeyEnum.DELETED_AT.get(nextResource); InstantDt deletedInstantOrNull = ResourceMetadataKeyEnum.DELETED_AT.get(nextResource);
Date deletedTimestampOrNull = deletedInstantOrNull != null ? deletedInstantOrNull.getValue() : null; Date deletedTimestampOrNull = deletedInstantOrNull != null ? deletedInstantOrNull.getValue() : null;
updateEntity(nextResource, nextOutcome.getEntity(), false, deletedTimestampOrNull, true, false); updateEntity(nextResource, nextOutcome.getEntity(), false, deletedTimestampOrNull, true, false, updateTime);
} }
myEntityManager.flush(); myEntityManager.flush();
@ -468,8 +405,7 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
IFhirResourceDao<?> resourceDao = getDao(nextEntry.getResource().getClass()); IFhirResourceDao<?> resourceDao = getDao(nextEntry.getResource().getClass());
Set<Long> val = resourceDao.processMatchUrl(matchUrl); Set<Long> val = resourceDao.processMatchUrl(matchUrl);
if (val.size() > 1) { if (val.size() > 1) {
throw new InvalidRequestException( throw new InvalidRequestException("Unable to process " + theActionName + " - Request would cause multiple resources to match URL: \"" + matchUrl + "\". Does transaction request contain duplicates?");
"Unable to process " + theActionName + " - Request would cause multiple resources to match URL: \"" + matchUrl + "\". Does transaction request contain duplicates?");
} }
} }
} }
@ -495,6 +431,31 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
return response; return response;
} }
private ca.uhn.fhir.jpa.dao.IFhirResourceDao<? extends IBaseResource> toDao(UrlParts theParts, String theVerb, String theUrl) {
RuntimeResourceDefinition resType;
try {
resType = getContext().getResourceDefinition(theParts.getResourceType());
} catch (DataFormatException e) {
String msg = getContext().getLocalizer().getMessage(BaseHapiFhirSystemDao.class, "transactionInvalidUrl", theVerb, theUrl);
throw new InvalidRequestException(msg);
}
IFhirResourceDao<? extends IBaseResource> dao = null;
if (resType != null) {
dao = getDao(resType.getImplementingClass());
}
if (dao == null) {
String msg = getContext().getLocalizer().getMessage(BaseHapiFhirSystemDao.class, "transactionInvalidUrl", theVerb, theUrl);
throw new InvalidRequestException(msg);
}
if (theParts.getResourceId() == null && theParts.getParams() == null) {
String msg = getContext().getLocalizer().getMessage(BaseHapiFhirSystemDao.class, "transactionInvalidUrl", theVerb, theUrl);
throw new InvalidRequestException(msg);
}
return dao;
}
private IFhirResourceDao<?> getDaoOrThrowException(Class<? extends IResource> theClass) { private IFhirResourceDao<?> getDaoOrThrowException(Class<? extends IResource> theClass) {
IFhirResourceDao<? extends IResource> retVal = getDao(theClass); IFhirResourceDao<? extends IResource> retVal = getDao(theClass);
if (retVal == null) { if (retVal == null) {
@ -503,15 +464,15 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
return retVal; return retVal;
} }
private static void handleTransactionCreateOrUpdateOutcome(Map<IdDt, IdDt> idSubstitutions, Map<IdDt, DaoMethodOutcome> idToPersistedOutcome, IdDt nextResourceId, DaoMethodOutcome outcome, private static void handleTransactionCreateOrUpdateOutcome(Map<IdDt, IdDt> idSubstitutions, Map<IdDt, DaoMethodOutcome> idToPersistedOutcome, IdDt nextResourceId, DaoMethodOutcome outcome, Entry newEntry, String theResourceType, IResource theRes) {
Entry newEntry, String theResourceType, IResource theRes) {
IdDt newId = (IdDt) outcome.getId().toUnqualifiedVersionless(); IdDt newId = (IdDt) outcome.getId().toUnqualifiedVersionless();
IdDt resourceId = isPlaceholder(nextResourceId) ? nextResourceId : nextResourceId.toUnqualifiedVersionless(); IdDt resourceId = isPlaceholder(nextResourceId) ? nextResourceId : nextResourceId.toUnqualifiedVersionless();
if (newId.equals(resourceId) == false) { if (newId.equals(resourceId) == false) {
idSubstitutions.put(resourceId, newId); idSubstitutions.put(resourceId, newId);
if (isPlaceholder(resourceId)) { if (isPlaceholder(resourceId)) {
/* /*
* The correct way for substitution IDs to be is to be with no resource type, but we'll accept the qualified kind too just to be lenient. * The correct way for substitution IDs to be is to be with no resource type, but we'll accept the qualified
* kind too just to be lenient.
*/ */
idSubstitutions.put(new IdDt(theResourceType + '/' + resourceId.getValue()), newId); idSubstitutions.put(new IdDt(theResourceType + '/' + resourceId.getValue()), newId);
} }
@ -538,52 +499,4 @@ public class FhirSystemDaoDstu2 extends BaseHapiFhirSystemDao<Bundle> {
return Integer.toString(theStatusCode) + " " + defaultString(Constants.HTTP_STATUS_NAMES.get(theStatusCode)); return Integer.toString(theStatusCode) + " " + defaultString(Constants.HTTP_STATUS_NAMES.get(theStatusCode));
} }
private static class UrlParts {
private IFhirResourceDao<? extends IBaseResource> myDao;
private String myParams;
private String myResourceId;
private String myResourceType;
private String myVersionId;
public IFhirResourceDao<? extends IBaseResource> getDao() {
return myDao;
}
public String getParams() {
return myParams;
}
public String getResourceId() {
return myResourceId;
}
public String getResourceType() {
return myResourceType;
}
public String getVersionId() {
return myVersionId;
}
public void setDao(IFhirResourceDao<? extends IBaseResource> theDao) {
myDao = theDao;
}
public void setParams(String theParams) {
myParams = theParams;
}
public void setResourceId(String theResourceId) {
myResourceId = theResourceId;
}
public void setResourceType(String theResourceType) {
myResourceType = theResourceType;
}
public void setVersionId(String theVersionId) {
myVersionId = theVersionId;
}
}
} }

36
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/IFhirResourceDaoSubscription.java Normal file
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@ -0,0 +1,36 @@
package ca.uhn.fhir.jpa.dao;
/*
* #%L
* HAPI FHIR JPA Server
* %%
* Copyright (C) 2014 - 2015 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import org.hl7.fhir.instance.model.api.IBaseResource;
import ca.uhn.fhir.jpa.entity.SubscriptionTable;
import ca.uhn.fhir.model.dstu2.valueset.SubscriptionStatusEnum;
public interface IFhirResourceDaoSubscription<T extends IBaseResource> extends IFhirResourceDao<T> {
void pollForNewUndeliveredResources();
void setSubscriptionStatus(Long theResourceId, SubscriptionStatusEnum theStatus);
SubscriptionTable getSubscriptionByResourceId(long theSubscriptionResourceId);
}

6
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/BaseHasResource.java
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@ -98,7 +98,11 @@ public abstract class BaseHasResource {
public abstract IdDt getIdDt(); public abstract IdDt getIdDt();
public InstantDt getPublished() { public InstantDt getPublished() {
return new InstantDt(myPublished); if (myPublished != null) {
return new InstantDt(myPublished);
} else {
return null;
}
} }
public byte[] getResource() { public byte[] getResource() {

47
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/SubscriptionCandidateResource.java Normal file
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@ -0,0 +1,47 @@
package ca.uhn.fhir.jpa.entity;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.FetchType;
import javax.persistence.GeneratedValue;
import javax.persistence.GenerationType;
import javax.persistence.Id;
import javax.persistence.JoinColumn;
import javax.persistence.ManyToOne;
import javax.persistence.SequenceGenerator;
import javax.persistence.Table;
@Entity
@Table(name = "HFJ_SUBSCRIPTION_CAND_RES")
public class SubscriptionCandidateResource {
@Id
@GeneratedValue(strategy = GenerationType.SEQUENCE)
@SequenceGenerator(name = "SEQ_SUBSCRIPTION_CAND_ID", sequenceName = "SEQ_SUBSCRIPTION_CAND_ID")
@Column(name = "PID", insertable = false, updatable = false)
private Long myId;
@ManyToOne(fetch = FetchType.EAGER)
@JoinColumn(name = "RES_ID", referencedColumnName = "RES_ID")
private ResourceTable myResource;
@Column(name = "RES_VERSION", nullable = false)
private long myResourceVersion;
public ResourceTable getResource() {
return myResource;
}
public long getResourceVersion() {
return myResourceVersion;
}
public void setResource(ResourceTable theResource) {
myResource = theResource;
}
public void setResourceVersion(long theResourceVersion) {
myResourceVersion = theResourceVersion;
}
}

29
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/SubscriptionFlaggedResource.java Normal file
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@ -0,0 +1,29 @@
package ca.uhn.fhir.jpa.entity;
import java.util.Date;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.GeneratedValue;
import javax.persistence.GenerationType;
import javax.persistence.Id;
import javax.persistence.SequenceGenerator;
import javax.persistence.Table;
import javax.persistence.Temporal;
import javax.persistence.TemporalType;
@Entity
@Table(name = "HFJ_SUBSCRIPTION_FLAG_RES")
public class SubscriptionFlaggedResource {
@Id
@GeneratedValue(strategy = GenerationType.SEQUENCE)
@SequenceGenerator(name = "SEQ_SUBSCRIPTION_FLAG_ID", sequenceName = "SEQ_SUBSCRIPTION_FLAG_ID")
@Column(name = "PID", insertable = false, updatable = false)
private Long myId;
@Temporal(TemporalType.TIMESTAMP)
@Column(name = "CREATED", nullable = false)
private Date myCreated;
}

112
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/SubscriptionTable.java Normal file
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@ -0,0 +1,112 @@
package ca.uhn.fhir.jpa.entity;
import java.util.Date;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.EnumType;
import javax.persistence.Enumerated;
import javax.persistence.ForeignKey;
import javax.persistence.GeneratedValue;
import javax.persistence.GenerationType;
import javax.persistence.Id;
import javax.persistence.JoinColumn;
import javax.persistence.NamedQueries;
import javax.persistence.NamedQuery;
import javax.persistence.OneToOne;
import javax.persistence.SequenceGenerator;
import javax.persistence.Table;
import javax.persistence.Temporal;
import javax.persistence.TemporalType;
import javax.persistence.UniqueConstraint;
import ca.uhn.fhir.model.dstu2.valueset.SubscriptionStatusEnum;
//@formatter:off
@Entity
@Table(name = "HFJ_SUBSCRIPTION", uniqueConstraints= {
@UniqueConstraint(name="IDX_SUBS_RESID", columnNames= { "RES_ID" }),
@UniqueConstraint(name="IDX_SUBS_NEXTCHECK", columnNames= { "SUBSCRIPTION_STATUS", "NEXT_CHECK" })
})
@NamedQueries({
@NamedQuery(name="Q_HFJ_SUBSCRIPTION_SET_STATUS", query="UPDATE SubscriptionTable t SET t.myStatus = :status WHERE t.myResId = :res_id"),
@NamedQuery(name="Q_HFJ_SUBSCRIPTION_NEXT_CHECK", query="SELECT t FROM SubscriptionTable t WHERE t.myStatus = :status AND t.myNextCheck <= :next_check"),
@NamedQuery(name="Q_HFJ_SUBSCRIPTION_GET_BY_RES", query="SELECT t FROM SubscriptionTable t WHERE t.myResId = :res_id"),
@NamedQuery(name="Q_HFJ_SUBSCRIPTION_DELETE", query="DELETE FROM SubscriptionTable t WHERE t.myResId = :res_id"),
})
//@formatter:on
public class SubscriptionTable {
@Column(name = "CHECK_INTERVAL", nullable = false)
private long myCheckInterval;
@Id
@GeneratedValue(strategy = GenerationType.SEQUENCE)
@SequenceGenerator(name = "SEQ_SUBSCRIPTION_ID", sequenceName = "SEQ_SUBSCRIPTION_ID")
@Column(name = "PID", insertable = false, updatable = false)
private Long myId;
@Temporal(TemporalType.TIMESTAMP)
@Column(name = "NEXT_CHECK", nullable = false)
private Date myNextCheck;
@Temporal(TemporalType.TIMESTAMP)
@Column(name = "NEXT_CHECK_SINCE", nullable = false)
private Date myNextCheckSince;
@Column(name = "RES_ID", insertable = false, updatable = false)
private Long myResId;
@Column(name = "SUBSCRIPTION_STATUS", nullable = false, length = 20)
@Enumerated(EnumType.STRING)
private SubscriptionStatusEnum myStatus;
@OneToOne()
@JoinColumn(name = "RES_ID", insertable = true, updatable = false, referencedColumnName = "RES_ID", foreignKey = @ForeignKey(name = "FK_SUBSCRIPTION_RESOURCE_ID") )
private ResourceTable mySubscriptionResource;
public long getCheckInterval() {
return myCheckInterval;
}
public Long getId() {
return myId;
}
public Date getNextCheck() {
return myNextCheck;
}
public Date getNextCheckSince() {
return myNextCheckSince;
}
public SubscriptionStatusEnum getStatus() {
return myStatus;
}
public ResourceTable getSubscriptionResource() {
return mySubscriptionResource;
}
public void setCheckInterval(long theCheckInterval) {
myCheckInterval = theCheckInterval;
}
public void setNextCheck(Date theNextCheck) {
myNextCheck = theNextCheck;
}
public void setNextCheckSince(Date theNextCheckSince) {
myNextCheckSince = theNextCheckSince;
}
public void setStatus(SubscriptionStatusEnum theStatus) {
myStatus = theStatus;
}
public void setSubscriptionResource(ResourceTable theSubscriptionResource) {
mySubscriptionResource = theSubscriptionResource;
}
}

25
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/BaseJpaDstu2Test.java
View File

@ -17,7 +17,6 @@ import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.beans.factory.annotation.Qualifier; import org.springframework.beans.factory.annotation.Qualifier;
import org.springframework.test.context.ContextConfiguration; import org.springframework.test.context.ContextConfiguration;
import org.springframework.test.context.junit4.SpringJUnit4ClassRunner; import org.springframework.test.context.junit4.SpringJUnit4ClassRunner;
import org.springframework.test.context.transaction.TransactionConfiguration;
import org.springframework.transaction.PlatformTransactionManager; import org.springframework.transaction.PlatformTransactionManager;
import org.springframework.transaction.TransactionStatus; import org.springframework.transaction.TransactionStatus;
import org.springframework.transaction.annotation.Transactional; import org.springframework.transaction.annotation.Transactional;
@ -38,6 +37,9 @@ import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamUri;
import ca.uhn.fhir.jpa.entity.ResourceLink; import ca.uhn.fhir.jpa.entity.ResourceLink;
import ca.uhn.fhir.jpa.entity.ResourceTable; import ca.uhn.fhir.jpa.entity.ResourceTable;
import ca.uhn.fhir.jpa.entity.ResourceTag; import ca.uhn.fhir.jpa.entity.ResourceTag;
import ca.uhn.fhir.jpa.entity.SubscriptionCandidateResource;
import ca.uhn.fhir.jpa.entity.SubscriptionFlaggedResource;
import ca.uhn.fhir.jpa.entity.SubscriptionTable;
import ca.uhn.fhir.jpa.entity.TagDefinition; import ca.uhn.fhir.jpa.entity.TagDefinition;
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu2; import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu2;
import ca.uhn.fhir.model.dstu2.resource.Bundle; import ca.uhn.fhir.model.dstu2.resource.Bundle;
@ -55,6 +57,7 @@ import ca.uhn.fhir.model.dstu2.resource.Practitioner;
import ca.uhn.fhir.model.dstu2.resource.Questionnaire; import ca.uhn.fhir.model.dstu2.resource.Questionnaire;
import ca.uhn.fhir.model.dstu2.resource.QuestionnaireResponse; import ca.uhn.fhir.model.dstu2.resource.QuestionnaireResponse;
import ca.uhn.fhir.model.dstu2.resource.StructureDefinition; import ca.uhn.fhir.model.dstu2.resource.StructureDefinition;
import ca.uhn.fhir.model.dstu2.resource.Subscription;
import ca.uhn.fhir.model.dstu2.resource.Substance; import ca.uhn.fhir.model.dstu2.resource.Substance;
import ca.uhn.fhir.model.dstu2.resource.ValueSet; import ca.uhn.fhir.model.dstu2.resource.ValueSet;
import ca.uhn.fhir.parser.IParser; import ca.uhn.fhir.parser.IParser;
@ -66,7 +69,6 @@ import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
@ContextConfiguration(locations={ @ContextConfiguration(locations={
"classpath:hapi-fhir-server-resourceproviders-dstu2.xml", "classpath:hapi-fhir-server-resourceproviders-dstu2.xml",
"classpath:fhir-jpabase-spring-test-config.xml"}) "classpath:fhir-jpabase-spring-test-config.xml"})
@TransactionConfiguration(defaultRollback=false)
//@formatter:on //@formatter:on
public abstract class BaseJpaDstu2Test extends BaseJpaTest { public abstract class BaseJpaDstu2Test extends BaseJpaTest {
@ -74,9 +76,6 @@ public abstract class BaseJpaDstu2Test extends BaseJpaTest {
@Qualifier("myConceptMapDaoDstu2") @Qualifier("myConceptMapDaoDstu2")
protected IFhirResourceDao<ConceptMap> myConceptMapDao; protected IFhirResourceDao<ConceptMap> myConceptMapDao;
@Autowired @Autowired
@Qualifier("mySubstanceDaoDstu2")
protected IFhirResourceDao<Substance> mySubstanceDao;
@Autowired
protected DaoConfig myDaoConfig; protected DaoConfig myDaoConfig;
@Autowired @Autowired
@Qualifier("myDeviceDaoDstu2") @Qualifier("myDeviceDaoDstu2")
@ -126,6 +125,12 @@ public abstract class BaseJpaDstu2Test extends BaseJpaTest {
@Qualifier("myStructureDefinitionDaoDstu2") @Qualifier("myStructureDefinitionDaoDstu2")
protected IFhirResourceDao<StructureDefinition> myStructureDefinitionDao; protected IFhirResourceDao<StructureDefinition> myStructureDefinitionDao;
@Autowired @Autowired
@Qualifier("mySubscriptionDaoDstu2")
protected IFhirResourceDaoSubscription<Subscription> mySubscriptionDao;
@Autowired
@Qualifier("mySubstanceDaoDstu2")
protected IFhirResourceDao<Substance> mySubstanceDao;
@Autowired
@Qualifier("mySystemDaoDstu2") @Qualifier("mySystemDaoDstu2")
protected IFhirSystemDao<Bundle> mySystemDao; protected IFhirSystemDao<Bundle> mySystemDao;
@Autowired @Autowired
@ -160,6 +165,13 @@ public abstract class BaseJpaDstu2Test extends BaseJpaTest {
return newJsonParser.parseResource(type, string); return newJsonParser.parseResource(type, string);
} }
public TransactionTemplate newTxTemplate() {
TransactionTemplate retVal = new TransactionTemplate(myTxManager);
retVal.setPropagationBehavior(TransactionTemplate.PROPAGATION_REQUIRES_NEW);
retVal.afterPropertiesSet();
return retVal;
}
public static void purgeDatabase(final EntityManager entityManager, PlatformTransactionManager theTxManager) { public static void purgeDatabase(final EntityManager entityManager, PlatformTransactionManager theTxManager) {
TransactionTemplate txTemplate = new TransactionTemplate(theTxManager); TransactionTemplate txTemplate = new TransactionTemplate(theTxManager);
txTemplate.setPropagationBehavior(TransactionTemplate.PROPAGATION_REQUIRED); txTemplate.setPropagationBehavior(TransactionTemplate.PROPAGATION_REQUIRED);
@ -174,6 +186,8 @@ public abstract class BaseJpaDstu2Test extends BaseJpaTest {
txTemplate.execute(new TransactionCallback<Void>() { txTemplate.execute(new TransactionCallback<Void>() {
@Override @Override
public Void doInTransaction(TransactionStatus theStatus) { public Void doInTransaction(TransactionStatus theStatus) {
entityManager.createQuery("DELETE from " + SubscriptionCandidateResource.class.getSimpleName() + " d").executeUpdate();
entityManager.createQuery("DELETE from " + SubscriptionFlaggedResource.class.getSimpleName() + " d").executeUpdate();
entityManager.createQuery("DELETE from " + ForcedId.class.getSimpleName() + " d").executeUpdate(); entityManager.createQuery("DELETE from " + ForcedId.class.getSimpleName() + " d").executeUpdate();
entityManager.createQuery("DELETE from " + ResourceIndexedSearchParamDate.class.getSimpleName() + " d").executeUpdate(); entityManager.createQuery("DELETE from " + ResourceIndexedSearchParamDate.class.getSimpleName() + " d").executeUpdate();
entityManager.createQuery("DELETE from " + ResourceIndexedSearchParamNumber.class.getSimpleName() + " d").executeUpdate(); entityManager.createQuery("DELETE from " + ResourceIndexedSearchParamNumber.class.getSimpleName() + " d").executeUpdate();
@ -189,6 +203,7 @@ public abstract class BaseJpaDstu2Test extends BaseJpaTest {
txTemplate.execute(new TransactionCallback<Void>() { txTemplate.execute(new TransactionCallback<Void>() {
@Override @Override
public Void doInTransaction(TransactionStatus theStatus) { public Void doInTransaction(TransactionStatus theStatus) {
entityManager.createQuery("DELETE from " + SubscriptionTable.class.getSimpleName() + " d").executeUpdate();
entityManager.createQuery("DELETE from " + ResourceHistoryTag.class.getSimpleName() + " d").executeUpdate(); entityManager.createQuery("DELETE from " + ResourceHistoryTag.class.getSimpleName() + " d").executeUpdate();
entityManager.createQuery("DELETE from " + ResourceTag.class.getSimpleName() + " d").executeUpdate(); entityManager.createQuery("DELETE from " + ResourceTag.class.getSimpleName() + " d").executeUpdate();
entityManager.createQuery("DELETE from " + TagDefinition.class.getSimpleName() + " d").executeUpdate(); entityManager.createQuery("DELETE from " + TagDefinition.class.getSimpleName() + " d").executeUpdate();

156
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoDstu2SubscriptionTest.java Normal file
View File

@ -0,0 +1,156 @@
package ca.uhn.fhir.jpa.dao;
import static org.hamcrest.Matchers.containsString;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertFalse;
import static org.junit.Assert.assertNotNull;
import static org.junit.Assert.assertNull;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.assertTrue;
import static org.junit.Assert.fail;
import java.util.Set;
import javax.persistence.TypedQuery;
import org.hl7.fhir.instance.model.api.IIdType;
import org.junit.Before;
import org.junit.Test;
import org.springframework.transaction.TransactionStatus;
import org.springframework.transaction.support.TransactionCallback;
import ca.uhn.fhir.jpa.entity.SubscriptionTable;
import ca.uhn.fhir.model.dstu2.resource.Observation;
import ca.uhn.fhir.model.dstu2.resource.Patient;
import ca.uhn.fhir.model.dstu2.resource.Subscription;
import ca.uhn.fhir.model.dstu2.valueset.ObservationStatusEnum;
import ca.uhn.fhir.model.dstu2.valueset.SubscriptionChannelTypeEnum;
import ca.uhn.fhir.model.dstu2.valueset.SubscriptionStatusEnum;
import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
public class FhirResourceDaoDstu2SubscriptionTest extends BaseJpaDstu2Test {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoDstu2SubscriptionTest.class);
@Test
public void testCreateSubscriptionInvalidCriteria() {
Subscription subs = new Subscription();
subs.setCriteria("Observation");
try {
mySubscriptionDao.create(subs);
fail();
} catch (UnprocessableEntityException e) {
assertThat(e.getMessage(), containsString("Subscription.criteria must be in the form \"{Resource Type}?[params]\""));
}
subs = new Subscription();
subs.setCriteria("http://foo.com/Observation?AAA=BBB");
try {
mySubscriptionDao.create(subs);
fail();
} catch (UnprocessableEntityException e) {
assertThat(e.getMessage(), containsString("Subscription.criteria must be in the form \"{Resource Type}?[params]\""));
}
subs = new Subscription();
subs.setCriteria("ObservationZZZZ?a=b");
try {
mySubscriptionDao.create(subs);
fail();
} catch (UnprocessableEntityException e) {
assertThat(e.getMessage(), containsString("Subscription.criteria contains invalid/unsupported resource type: ObservationZZZZ"));
}
subs = new Subscription();
subs.setCriteria("Observation?identifier=123");
try {
mySubscriptionDao.create(subs);
fail();
} catch (UnprocessableEntityException e) {
assertThat(e.getMessage(), containsString("Subscription.channel.type must be populated on this server"));
}
subs = new Subscription();
subs.setCriteria("Observation?identifier=123");
subs.getChannel().setType(SubscriptionChannelTypeEnum.WEBSOCKET);
assertTrue(mySubscriptionDao.create(subs).getId().hasIdPart());
}
@Before
public void beforeEnableSubscription() {
myDaoConfig.setSubscriptionEnabled(true);
}
@Test
public void testSubscriptionResourcesAppear() {
String methodName = "testSubscriptionResourcesAppear";
Patient p = new Patient();
p.addName().addFamily(methodName);
IIdType pId = myPatientDao.create(p).getId().toUnqualifiedVersionless();
Observation obs = new Observation();
obs.getSubject().setReference(pId);
obs.setStatus(ObservationStatusEnum.FINAL);
IIdType beforeId = myObservationDao.create(obs).getId().toUnqualifiedVersionless();
Subscription subs = new Subscription();
subs.getChannel().setType(SubscriptionChannelTypeEnum.WEBSOCKET);
subs.setCriteria("Observation?subject=Patient/123");
IIdType id = mySubscriptionDao.create(subs).getId().toUnqualifiedVersionless();
obs = new Observation();
obs.getSubject().setReference(pId);
obs.setStatus(ObservationStatusEnum.FINAL);
IIdType afterId1 = myObservationDao.create(obs).getId().toUnqualifiedVersionless();
obs = new Observation();
obs.getSubject().setReference(pId);
obs.setStatus(ObservationStatusEnum.FINAL);
IIdType afterId2 = myObservationDao.create(obs).getId().toUnqualifiedVersionless();
mySubscriptionDao.pollForNewUndeliveredResources();
}
@Test
public void testCreateSubscription() {
Subscription subs = new Subscription();
subs.setCriteria("Observation?subject=Patient/123");
subs.getChannel().setType(SubscriptionChannelTypeEnum.WEBSOCKET);
IIdType id = mySubscriptionDao.create(subs).getId().toUnqualifiedVersionless();
TypedQuery<SubscriptionTable> q = myEntityManager.createQuery("SELECT t from SubscriptionTable t WHERE t.mySubscriptionResource.myId = :id", SubscriptionTable.class);
q.setParameter("id", id.getIdPartAsLong());
final SubscriptionTable table = q.getSingleResult();
assertNotNull(table);
assertNotNull(table.getNextCheck());
assertEquals(table.getNextCheck(), table.getSubscriptionResource().getPublished().getValue());
assertEquals(SubscriptionStatusEnum.REQUESTED, myEntityManager.find(SubscriptionTable.class, table.getId()).getStatus());
assertEquals(SubscriptionStatusEnum.REQUESTED, mySubscriptionDao.read(id).getStatusElement().getValueAsEnum());
mySubscriptionDao.setSubscriptionStatus(id.getIdPartAsLong(), SubscriptionStatusEnum.ACTIVE);
assertEquals(SubscriptionStatusEnum.ACTIVE, myEntityManager.find(SubscriptionTable.class, table.getId()).getStatus());
assertEquals(SubscriptionStatusEnum.ACTIVE, mySubscriptionDao.read(id).getStatusElement().getValueAsEnum());
mySubscriptionDao.delete(id);
assertNull(myEntityManager.find(SubscriptionTable.class, table.getId()));
/*
* Re-create again
*/
subs = new Subscription();
subs.setCriteria("Observation?subject=Patient/123");
subs.getChannel().setType(SubscriptionChannelTypeEnum.WEBSOCKET);
subs.setId(id);
mySubscriptionDao.update(subs);
assertEquals(SubscriptionStatusEnum.REQUESTED, myEntityManager.createQuery("SELECT t FROM SubscriptionTable t WHERE t.myResId = " + id.getIdPart(), SubscriptionTable.class).getSingleResult().getStatus());
assertEquals(SubscriptionStatusEnum.REQUESTED, mySubscriptionDao.read(id).getStatusElement().getValueAsEnum());
}
}

6
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoDstu2Test.java
View File

@ -77,6 +77,7 @@ import ca.uhn.fhir.model.primitive.InstantDt;
import ca.uhn.fhir.model.primitive.StringDt; import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.model.primitive.UriDt; import ca.uhn.fhir.model.primitive.UriDt;
import ca.uhn.fhir.model.valueset.BundleEntrySearchModeEnum; import ca.uhn.fhir.model.valueset.BundleEntrySearchModeEnum;
import ca.uhn.fhir.model.valueset.BundleEntryTransactionMethodEnum;
import ca.uhn.fhir.rest.api.MethodOutcome; import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.api.RestOperationTypeEnum; import ca.uhn.fhir.rest.api.RestOperationTypeEnum;
import ca.uhn.fhir.rest.api.SortOrderEnum; import ca.uhn.fhir.rest.api.SortOrderEnum;
@ -966,8 +967,13 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
assertEquals(id.withVersion("1"), entries.get(2).getIdElement()); assertEquals(id.withVersion("1"), entries.get(2).getIdElement());
assertNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(0))); assertNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(0)));
assertEquals(BundleEntryTransactionMethodEnum.PUT, ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get((IResource) entries.get(0)));
assertNotNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(1))); assertNotNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(1)));
assertEquals(BundleEntryTransactionMethodEnum.DELETE, ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get((IResource) entries.get(1)));
assertNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(2))); assertNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(2)));
assertEquals(BundleEntryTransactionMethodEnum.POST, ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get((IResource) entries.get(2)));
} }
@Test @Test

3
hapi-fhir-jpaserver-base/src/test/resources/META-INF/persistence.xml
View File

@ -21,6 +21,9 @@
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamCoords</class> <class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamCoords</class>
<class>ca.uhn.fhir.jpa.entity.ResourceLink</class> <class>ca.uhn.fhir.jpa.entity.ResourceLink</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTag</class> <class>ca.uhn.fhir.jpa.entity.ResourceTag</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionTable</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionCandidateResource</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionFlaggedResource</class>
<class>ca.uhn.fhir.jpa.entity.TagDefinition</class> <class>ca.uhn.fhir.jpa.entity.TagDefinition</class>
<exclude-unlisted-classes>false</exclude-unlisted-classes> <exclude-unlisted-classes>false</exclude-unlisted-classes>

3
hapi-fhir-jpaserver-example/src/main/resources/META-INF/fhirtest_persistence.xml
View File

@ -20,6 +20,9 @@
<class>ca.uhn.fhir.jpa.entity.ResourceLink</class> <class>ca.uhn.fhir.jpa.entity.ResourceLink</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTable</class> <class>ca.uhn.fhir.jpa.entity.ResourceTable</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTag</class> <class>ca.uhn.fhir.jpa.entity.ResourceTag</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionTable</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionCandidateResource</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionFlaggedResource</class>
<class>ca.uhn.fhir.jpa.entity.TagDefinition</class> <class>ca.uhn.fhir.jpa.entity.TagDefinition</class>
<exclude-unlisted-classes>true</exclude-unlisted-classes> <exclude-unlisted-classes>true</exclude-unlisted-classes>

2
hapi-fhir-jpaserver-example/src/main/webapp/WEB-INF/hapi-fhir-server-database-config.xml
View File

@ -21,7 +21,7 @@
and other properties supported by BasicDataSource. and other properties supported by BasicDataSource.
--> -->
<bean id="myPersistenceDataSource" class="org.apache.commons.dbcp2.BasicDataSource" destroy-method="close"> <bean id="myPersistenceDataSource" class="org.apache.commons.dbcp2.BasicDataSource" destroy-method="close">
<property name="url" value="jdbc:derby:directory:jpaserver_derby_files;create=true" /> <property name="url" value="jdbc:derby:directory:target/jpaserver_derby_files;create=true" />
<property name="driverClassName" value="org.apache.derby.jdbc.EmbeddedDriver"></property> <property name="driverClassName" value="org.apache.derby.jdbc.EmbeddedDriver"></property>
<property name="username" value=""/> <property name="username" value=""/>
<property name="password" value=""/> <property name="password" value=""/>

3
hapi-fhir-jpaserver-uhnfhirtest/src/main/resources/META-INF/fhirtest_persistence.xml
View File

@ -20,6 +20,9 @@
<class>ca.uhn.fhir.jpa.entity.ResourceLink</class> <class>ca.uhn.fhir.jpa.entity.ResourceLink</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTable</class> <class>ca.uhn.fhir.jpa.entity.ResourceTable</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTag</class> <class>ca.uhn.fhir.jpa.entity.ResourceTag</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionTable</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionCandidateResource</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionFlaggedResource</class>
<class>ca.uhn.fhir.jpa.entity.TagDefinition</class> <class>ca.uhn.fhir.jpa.entity.TagDefinition</class>
<exclude-unlisted-classes>true</exclude-unlisted-classes> <exclude-unlisted-classes>true</exclude-unlisted-classes>

3
hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/fhir_jpatest_persistence.xml
View File

@ -16,6 +16,9 @@
<class>ca.uhn.fhir.jpa.entity.ResourceLink</class> <class>ca.uhn.fhir.jpa.entity.ResourceLink</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTable</class> <class>ca.uhn.fhir.jpa.entity.ResourceTable</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTag</class> <class>ca.uhn.fhir.jpa.entity.ResourceTag</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionTable</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionCandidateResource</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionFlaggedResource</class>
<exclude-unlisted-classes>true</exclude-unlisted-classes> <exclude-unlisted-classes>true</exclude-unlisted-classes>
<properties> <properties>

11
hapi-fhir-testpage-overlay/pom.xml
View File

@ -104,12 +104,10 @@
<dependency> <dependency>
<groupId>org.springframework</groupId> <groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId> <artifactId>spring-webmvc</artifactId>
<version>${spring_version}</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.springframework</groupId> <groupId>org.springframework</groupId>
<artifactId>spring-context</artifactId> <artifactId>spring-context</artifactId>
<version>${spring_version}</version>
<exclusions> <exclusions>
<exclusion> <exclusion>
<artifactId>xml-apis</artifactId> <artifactId>xml-apis</artifactId>
@ -120,53 +118,44 @@
<dependency> <dependency>
<groupId>org.springframework</groupId> <groupId>org.springframework</groupId>
<artifactId>spring-beans</artifactId> <artifactId>spring-beans</artifactId>
<version>${spring_version}</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.springframework</groupId> <groupId>org.springframework</groupId>
<artifactId>spring-tx</artifactId> <artifactId>spring-tx</artifactId>
<version>${spring_version}</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.springframework</groupId> <groupId>org.springframework</groupId>
<artifactId>spring-context-support</artifactId> <artifactId>spring-context-support</artifactId>
<version>${spring_version}</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.springframework</groupId> <groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId> <artifactId>spring-web</artifactId>
<version>${spring_version}</version>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.eclipse.jetty</groupId> <groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId> <artifactId>jetty-servlets</artifactId>
<version>${jetty_version}</version>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.eclipse.jetty</groupId> <groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-webapp</artifactId> <artifactId>jetty-webapp</artifactId>
<version>${jetty_version}</version>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.eclipse.jetty</groupId> <groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId> <artifactId>jetty-server</artifactId>
<version>${jetty_version}</version>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.eclipse.jetty</groupId> <groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId> <artifactId>jetty-servlet</artifactId>
<version>${jetty_version}</version>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>
<dependency> <dependency>
<groupId>org.eclipse.jetty</groupId> <groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId> <artifactId>jetty-util</artifactId>
<version>${jetty_version}</version>
<scope>test</scope> <scope>test</scope>
</dependency> </dependency>
</dependencies> </dependencies>

3
hapi-fhir-testpage-overlay/src/test/resources/META-INF/persistence.xml
View File

@ -21,6 +21,9 @@
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamCoords</class> <class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamCoords</class>
<class>ca.uhn.fhir.jpa.entity.ResourceLink</class> <class>ca.uhn.fhir.jpa.entity.ResourceLink</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTag</class> <class>ca.uhn.fhir.jpa.entity.ResourceTag</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionTable</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionCandidateResource</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionFlaggedResource</class>
<class>ca.uhn.fhir.jpa.entity.TagDefinition</class> <class>ca.uhn.fhir.jpa.entity.TagDefinition</class>
<exclude-unlisted-classes>false</exclude-unlisted-classes> <exclude-unlisted-classes>false</exclude-unlisted-classes>

2
hapi-tinder-plugin/src/main/resources/vm/jpa_spring_beans.vm
View File

@ -33,7 +33,7 @@
#foreach ( $res in $resources ) #foreach ( $res in $resources )
<bean id="my${res.name}Dao${versionCapitalized}" <bean id="my${res.name}Dao${versionCapitalized}"
## Some resource types have customized DAOs for resource specific functionality ## Some resource types have customized DAOs for resource specific functionality
#if ( ${versionCapitalized} == 'Dstu2' && ( ${res.name} == 'Bundle' || ${res.name} == 'QuestionnaireResponse' || ${res.name} == 'ValueSet')) #if ( ${versionCapitalized} == 'Dstu2' && ( ${res.name} == 'Bundle' || ${res.name} == 'Subscription' || ${res.name} == 'QuestionnaireResponse' || ${res.name} == 'ValueSet'))
class="ca.uhn.fhir.jpa.dao.FhirResourceDao${res.name}${versionCapitalized}"> class="ca.uhn.fhir.jpa.dao.FhirResourceDao${res.name}${versionCapitalized}">
#else #else
class="ca.uhn.fhir.jpa.dao.FhirResourceDao${versionCapitalized}"> class="ca.uhn.fhir.jpa.dao.FhirResourceDao${versionCapitalized}">

5
pom.xml
View File

@ -523,6 +523,11 @@
<artifactId>spring-web</artifactId> <artifactId>spring-web</artifactId>
<version>${spring_version}</version> <version>${spring_version}</version>
</dependency> </dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>${spring_version}</version>
</dependency>
<dependency> <dependency>
<groupId>org.thymeleaf</groupId> <groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId> <artifactId>thymeleaf</artifactId>

4
src/changes/changes.xml
View File

@ -26,6 +26,10 @@
JPA server did not correctly index search parameters of type "reference" where the JPA server did not correctly index search parameters of type "reference" where the
path had multiple entries (i.e. "Resource.path1 | Resource.path2") path had multiple entries (i.e. "Resource.path1 | Resource.path2")
</action> </action>
<action type="fix">
JPA server _history operations (server, type, instance) not correctly set the
Bundle.entry.request.method to POST or PUT for create and updates of the resource.
</action>
</release> </release>
<release version="1.2" date="2015-09-18"> <release version="1.2" date="2015-09-18">
<action type="add"> <action type="add">