begin with failing test
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Ken Stevens
parent
cbbba75d9a
commit
054f7e6678
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package ca.uhn.fhir.jpa.provider.r4;
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import ca.uhn.fhir.jpa.api.config.JpaStorageSettings;
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import ca.uhn.fhir.jpa.provider.BaseResourceProviderR4Test;
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import ca.uhn.fhir.parser.StrictErrorHandler;
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import ca.uhn.fhir.rest.api.Constants;
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import ca.uhn.fhir.rest.api.EncodingEnum;
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import ca.uhn.fhir.rest.api.server.SystemRequestDetails;
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import ca.uhn.fhir.rest.client.api.IGenericClient;
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import ca.uhn.fhir.util.BundleUtil;
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import com.google.common.base.Charsets;
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import org.apache.commons.io.IOUtils;
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import org.apache.http.client.methods.CloseableHttpResponse;
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import org.apache.http.client.methods.HttpGet;
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import org.apache.http.client.methods.HttpPut;
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import org.hl7.fhir.r4.model.Bundle;
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import org.hl7.fhir.r4.model.Bundle.BundleEntryComponent;
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import org.hl7.fhir.r4.model.Encounter;
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import org.hl7.fhir.r4.model.Encounter.EncounterStatus;
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import org.hl7.fhir.r4.model.Observation;
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import org.hl7.fhir.r4.model.Observation.ObservationStatus;
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import org.hl7.fhir.r4.model.Organization;
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import org.hl7.fhir.r4.model.Parameters;
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import org.hl7.fhir.r4.model.Patient;
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import org.hl7.fhir.r4.model.Reference;
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import org.hl7.fhir.r4.model.StringType;
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import org.hl7.fhir.r4.model.Task;
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import org.junit.jupiter.api.AfterEach;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Test;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Set;
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import java.util.TreeSet;
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import static ca.uhn.fhir.rest.server.provider.ProviderConstants.OPERATION_MERGE;
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import static ca.uhn.fhir.rest.server.provider.ProviderConstants.OPERATION_MERGE_SOURCE_PATIENT_IDENTIFIER;
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import static ca.uhn.fhir.rest.server.provider.ProviderConstants.OPERATION_MERGE_TARGET_PATIENT;
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import static ca.uhn.fhir.rest.server.provider.ProviderConstants.OPERATION_MERGE_TARGET_PATIENT_IDENTIFIER;
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import static org.assertj.core.api.Assertions.assertThat;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import static org.junit.jupiter.api.Assertions.assertNotNull;
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import static org.junit.jupiter.api.Assertions.assertNull;
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public class PatientMergeR4Test extends BaseResourceProviderR4Test {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(PatientMergeR4Test.class);
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private String orgId;
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private String sourcePatId;
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private String taskId;
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private String encId1;
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private String encId2;
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private ArrayList<String> myObsIds;
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private String targetPatId;
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private String targetEnc1;
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@BeforeEach
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public void beforeDisableResultReuse() {
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myStorageSettings.setReuseCachedSearchResultsForMillis(null);
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}
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@Override
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@AfterEach
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public void after() throws Exception {
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super.after();
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myStorageSettings.setReuseCachedSearchResultsForMillis(new JpaStorageSettings().getReuseCachedSearchResultsForMillis());
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}
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@Override
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@BeforeEach
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public void before() throws Exception {
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super.before();
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myFhirContext.setParserErrorHandler(new StrictErrorHandler());
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myStorageSettings.setAllowMultipleDelete(true);
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Organization org = new Organization();
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org.setName("an org");
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orgId = myClient.create().resource(org).execute().getId().toUnqualifiedVersionless().getValue();
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ourLog.info("OrgId: {}", orgId);
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Patient patient = new Patient();
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patient.getManagingOrganization().setReference(orgId);
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sourcePatId = myClient.create().resource(patient).execute().getId().toUnqualifiedVersionless().getValue();
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Patient patient2 = new Patient();
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patient2.getManagingOrganization().setReference(orgId);
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targetPatId = myClient.create().resource(patient2).execute().getId().toUnqualifiedVersionless().getValue();
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Encounter enc1 = new Encounter();
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enc1.setStatus(EncounterStatus.CANCELLED);
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enc1.getSubject().setReference(sourcePatId);
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enc1.getServiceProvider().setReference(orgId);
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encId1 = myClient.create().resource(enc1).execute().getId().toUnqualifiedVersionless().getValue();
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Encounter enc2 = new Encounter();
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enc2.setStatus(EncounterStatus.ARRIVED);
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enc2.getSubject().setReference(sourcePatId);
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enc2.getServiceProvider().setReference(orgId);
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encId2 = myClient.create().resource(enc2).execute().getId().toUnqualifiedVersionless().getValue();
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Task task = new Task();
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task.setStatus(Task.TaskStatus.COMPLETED);
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task.getOwner().setReference(sourcePatId);
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taskId = myClient.create().resource(task).execute().getId().toUnqualifiedVersionless().getValue();
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Encounter targetEnc1 = new Encounter();
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targetEnc1.setStatus(EncounterStatus.ARRIVED);
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targetEnc1.getSubject().setReference(targetPatId);
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targetEnc1.getServiceProvider().setReference(orgId);
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this.targetEnc1 = myClient.create().resource(targetEnc1).execute().getId().toUnqualifiedVersionless().getValue();
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myObsIds = new ArrayList<>();
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for (int i = 0; i < 20; i++) {
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Observation obs = new Observation();
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obs.getSubject().setReference(sourcePatId);
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obs.setStatus(ObservationStatus.FINAL);
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String obsId = myClient.create().resource(obs).execute().getId().toUnqualifiedVersionless().getValue();
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myObsIds.add(obsId);
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}
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}
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@Test
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public void testMerge() throws Exception {
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Parameters inParams = new Parameters();
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inParams.addParameter().setName(OPERATION_MERGE_SOURCE_PATIENT_IDENTIFIER).setValue(new Reference(sourcePatId));
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inParams.addParameter().setName(OPERATION_MERGE_TARGET_PATIENT_IDENTIFIER).setValue(new Reference(targetPatId));
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IGenericClient client = myFhirContext.newRestfulGenericClient(myServerBase);
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Parameters outParams = client.operation()
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.onType("Patient")
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.named(OPERATION_MERGE)
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.withParameters(inParams)
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.returnResourceType(Parameters.class)
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.execute();
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// FIXME KHS validate outParams
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Bundle bundle = fetchBundle(myServerBase + "/" + targetPatId + "/$everything?_format=json&_count=100", EncodingEnum.JSON);
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assertNull(bundle.getLink("next"));
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Set<String> actual = new TreeSet<>();
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for (BundleEntryComponent nextEntry : bundle.getEntry()) {
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actual.add(nextEntry.getResource().getIdElement().toUnqualifiedVersionless().getValue());
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}
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ourLog.info("Found IDs: {}", actual);
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assertThat(actual).doesNotContain(sourcePatId);
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assertThat(actual).contains(encId1);
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assertThat(actual).contains(encId2);
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assertThat(actual).contains(orgId);
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assertThat(actual).contains(taskId);
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assertThat(actual).contains(myObsIds.toArray(new String[0]));
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assertThat(actual).contains(targetPatId);
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assertThat(actual).contains(targetEnc1);
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}
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// FIXME KHS look at PatientEverythingR4Test for ideas for other tests
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private Bundle fetchBundle(String theUrl, EncodingEnum theEncoding) throws IOException {
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Bundle bundle;
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HttpGet get = new HttpGet(theUrl);
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CloseableHttpResponse resp = ourHttpClient.execute(get);
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try {
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assertEquals(theEncoding.getResourceContentTypeNonLegacy(), resp.getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue().replaceAll(";.*", ""));
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bundle = theEncoding.newParser(myFhirContext).parseResource(Bundle.class, IOUtils.toString(resp.getEntity().getContent(), Charsets.UTF_8));
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} finally {
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IOUtils.closeQuietly(resp);
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}
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return bundle;
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}
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}
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@ -243,4 +243,18 @@ public class ProviderConstants {
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* Operation name for the "$export" operation
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*/
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public static final String OPERATION_EXPORT = "$export";
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/**
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* Operation name for the Resource "$merge" operation
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* Hapi-fhir use is based on https://www.hl7.org/fhir/patient-operation-merge.html
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*/
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public static final String OPERATION_MERGE = "$merge";
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/**
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* Patient $merge operation parameters
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*/
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public static final String OPERATION_MERGE_SOURCE_PATIENT = "source-patient";
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public static final String OPERATION_MERGE_SOURCE_PATIENT_IDENTIFIER = "source-patient-identifier";
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public static final String OPERATION_MERGE_TARGET_PATIENT = "target-patient";
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public static final String OPERATION_MERGE_TARGET_PATIENT_IDENTIFIER = "target-patient-identifier";
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public static final String OPERATION_MERGE_RESULT_PATIENT = "result-patient";
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public static final String OPERATION_MERGE_PREVIEW = "preview";
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}
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