Fix _has parameter (#1525)

* Fix _has parameter

* Bug fixes

* Add a comment

* Test fixes
This commit is contained in:
James Agnew 2019-10-03 21:19:31 -04:00 committed by GitHub
parent 836fac9a30
commit 069db501ee
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13 changed files with 313 additions and 64 deletions

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@ -40,7 +40,7 @@ public interface IQueryParameterAnd<T extends IQueryParameterOr<?>> extends Seri
* @param theContext TODO * @param theContext TODO
* @param theParamName TODO * @param theParamName TODO
*/ */
public void setValuesAsQueryTokens(FhirContext theContext, String theParamName, List<QualifiedParamList> theParameters) throws InvalidRequestException; void setValuesAsQueryTokens(FhirContext theContext, String theParamName, List<QualifiedParamList> theParameters) throws InvalidRequestException;
/** /**
* *
@ -50,7 +50,7 @@ public interface IQueryParameterAnd<T extends IQueryParameterOr<?>> extends Seri
* for information on the <b>token</b> format * for information on the <b>token</b> format
* </p> * </p>
*/ */
public List<T> getValuesAsQueryTokens(); List<T> getValuesAsQueryTokens();
} }

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@ -95,6 +95,7 @@ import java.util.*;
import java.util.Map.Entry; import java.util.Map.Entry;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import static org.apache.commons.lang3.ObjectUtils.defaultIfNull;
import static org.apache.commons.lang3.StringUtils.*; import static org.apache.commons.lang3.StringUtils.*;
/** /**
@ -242,7 +243,7 @@ public class SearchBuilder implements ISearchBuilder {
paramReference = next.getReferenceFieldName(); paramReference = next.getReferenceFieldName();
parameterName = next.getParameterName(); parameterName = next.getParameterName();
paramName = parameterName.replaceAll("\\..*", ""); paramName = parameterName.replaceAll("\\..*", "");
parameters.add(QualifiedParamList.singleton(paramName, next.getValueAsQueryToken(myContext))); parameters.add(QualifiedParamList.singleton(null, next.getValueAsQueryToken(myContext)));
} }
if (paramName == null) { if (paramName == null) {
@ -364,7 +365,7 @@ public class SearchBuilder implements ISearchBuilder {
} }
final Expression<BigDecimal> fromObj = join.get("myValue"); final Expression<BigDecimal> fromObj = join.get("myValue");
ParamPrefixEnum prefix = ObjectUtils.defaultIfNull(param.getPrefix(), ParamPrefixEnum.EQUAL); ParamPrefixEnum prefix = defaultIfNull(param.getPrefix(), ParamPrefixEnum.EQUAL);
if (operation == SearchFilterParser.CompareOperation.ne) { if (operation == SearchFilterParser.CompareOperation.ne) {
prefix = ParamPrefixEnum.NOT_EQUAL; prefix = ParamPrefixEnum.NOT_EQUAL;
} else if (operation == SearchFilterParser.CompareOperation.lt) { } else if (operation == SearchFilterParser.CompareOperation.lt) {
@ -772,15 +773,31 @@ public class SearchBuilder implements ISearchBuilder {
return chainValue; return chainValue;
} }
private Predicate addPredicateResourceId(List<List<IQueryParameterType>> theValues, RequestDetails theRequest) { private Predicate addPredicateResourceId(String theResourceName, List<List<IQueryParameterType>> theValues, RequestDetails theRequest) {
return addPredicateResourceId(theValues, return addPredicateResourceId(theValues, theResourceName, null, theRequest);
null, theRequest);
} }
private Predicate addPredicateResourceId(List<List<IQueryParameterType>> theValues, private Predicate addPredicateResourceId(List<List<IQueryParameterType>> theValues, String theResourceName, SearchFilterParser.CompareOperation theOperation, RequestDetails theRequest) {
SearchFilterParser.CompareOperation operation, RequestDetails theRequest) {
Predicate nextPredicate = createPredicateResourceId(myResourceTableRoot, theResourceName, theValues, theOperation, theRequest);
if (nextPredicate != null) {
myPredicates.add(nextPredicate);
return nextPredicate;
}
return null;
}
@org.jetbrains.annotations.Nullable
private Predicate createPredicateResourceId(Root<ResourceTable> theRoot, String theResourceName, List<List<IQueryParameterType>> theValues, SearchFilterParser.CompareOperation theOperation, RequestDetails theRequest) {
Predicate nextPredicate = null;
Set<Long> allOrPids = null;
for (List<? extends IQueryParameterType> nextValue : theValues) { for (List<? extends IQueryParameterType> nextValue : theValues) {
Set<Long> orPids = new HashSet<>(); Set<Long> orPids = new HashSet<>();
boolean haveValue = false;
for (IQueryParameterType next : nextValue) { for (IQueryParameterType next : nextValue) {
String value = next.getValueAsQueryToken(myContext); String value = next.getValueAsQueryToken(myContext);
if (value != null && value.startsWith("|")) { if (value != null && value.startsWith("|")) {
@ -789,8 +806,9 @@ public class SearchBuilder implements ISearchBuilder {
IdType valueAsId = new IdType(value); IdType valueAsId = new IdType(value);
if (isNotBlank(value)) { if (isNotBlank(value)) {
haveValue = true;
try { try {
Long pid = myIdHelperService.translateForcedIdToPid(myResourceName, valueAsId.getIdPart(), theRequest); Long pid = myIdHelperService.translateForcedIdToPid(theResourceName, valueAsId.getIdPart(), theRequest);
orPids.add(pid); orPids.add(pid);
} catch (ResourceNotFoundException e) { } catch (ResourceNotFoundException e) {
// This is not an error in a search, it just results in no matchesFhirResourceDaoR4InterceptorTest // This is not an error in a search, it just results in no matchesFhirResourceDaoR4InterceptorTest
@ -798,30 +816,39 @@ public class SearchBuilder implements ISearchBuilder {
} }
} }
} }
if (haveValue) {
Predicate nextPredicate = null; if (allOrPids == null) {
if (orPids.size() > 0) { allOrPids = orPids;
if ((operation == null) ||
(operation == SearchFilterParser.CompareOperation.eq)) {
nextPredicate = myResourceTableRoot.get("myId").as(Long.class).in(orPids);
} else if (operation == SearchFilterParser.CompareOperation.ne) {
nextPredicate = myResourceTableRoot.get("myId").as(Long.class).in(orPids).not();
} else { } else {
throw new InvalidRequestException("Unsupported operator specified in resource ID query, only \"eq\" and \"ne\" are supported"); allOrPids.retainAll(orPids);
} }
myPredicates.add(nextPredicate);
} else { }
}
if (allOrPids != null && allOrPids.isEmpty()) {
// This will never match // This will never match
nextPredicate = myBuilder.equal(myResourceTableRoot.get("myId").as(Long.class), -1); nextPredicate = myBuilder.equal(theRoot.get("myId").as(Long.class), -1);
myPredicates.add(nextPredicate);
} else if (allOrPids != null) {
SearchFilterParser.CompareOperation operation = defaultIfNull(theOperation, SearchFilterParser.CompareOperation.eq);
assert operation == null || operation == SearchFilterParser.CompareOperation.eq || operation == SearchFilterParser.CompareOperation.ne;
switch (operation) {
default:
case eq:
nextPredicate = theRoot.get("myId").as(Long.class).in(allOrPids);
break;
case ne:
nextPredicate = theRoot.get("myId").as(Long.class).in(allOrPids).not();
break;
}
} }
if (operation != null) {
return nextPredicate; return nextPredicate;
} }
}
return null;
}
private Predicate addPredicateSource(List<? extends IQueryParameterType> theList, SearchFilterParser.CompareOperation theOperation, RequestDetails theRequest) { private Predicate addPredicateSource(List<? extends IQueryParameterType> theList, SearchFilterParser.CompareOperation theOperation, RequestDetails theRequest) {
@ -1582,7 +1609,7 @@ public class SearchBuilder implements ISearchBuilder {
code = theBuilder.equal(theFrom.get("myUnits"), unitsValue); code = theBuilder.equal(theFrom.get("myUnits"), unitsValue);
} }
cmpValue = ObjectUtils.defaultIfNull(cmpValue, ParamPrefixEnum.EQUAL); cmpValue = defaultIfNull(cmpValue, ParamPrefixEnum.EQUAL);
final Expression<BigDecimal> path = theFrom.get("myValue"); final Expression<BigDecimal> path = theFrom.get("myValue");
String invalidMessageName = "invalidQuantityPrefix"; String invalidMessageName = "invalidQuantityPrefix";
@ -1614,7 +1641,7 @@ public class SearchBuilder implements ISearchBuilder {
hashPredicate = myBuilder.equal(theFrom.get("myHashIdentity"), hash); hashPredicate = myBuilder.equal(theFrom.get("myHashIdentity"), hash);
} }
cmpValue = ObjectUtils.defaultIfNull(cmpValue, ParamPrefixEnum.EQUAL); cmpValue = defaultIfNull(cmpValue, ParamPrefixEnum.EQUAL);
final Expression<BigDecimal> path = theFrom.get("myValue"); final Expression<BigDecimal> path = theFrom.get("myValue");
String invalidMessageName = "invalidQuantityPrefix"; String invalidMessageName = "invalidQuantityPrefix";
@ -2709,8 +2736,7 @@ public class SearchBuilder implements ISearchBuilder {
null, null,
null, null,
theFilter.getValue()); theFilter.getValue());
return addPredicateResourceId(Collections.singletonList(Collections.singletonList(param)), return addPredicateResourceId(Collections.singletonList(Collections.singletonList(param)), myResourceName, theFilter.getOperation(), theRequest);
theFilter.getOperation(), theRequest);
} else { } else {
throw new InvalidRequestException("Unexpected search parameter type encountered, expected token type for _id search"); throw new InvalidRequestException("Unexpected search parameter type encountered, expected token type for _id search");
} }
@ -2833,7 +2859,7 @@ public class SearchBuilder implements ISearchBuilder {
if (theParamName.equals(IAnyResource.SP_RES_ID)) { if (theParamName.equals(IAnyResource.SP_RES_ID)) {
addPredicateResourceId(theAndOrParams, theRequest); addPredicateResourceId(theResourceName, theAndOrParams, theRequest);
} else if (theParamName.equals(IAnyResource.SP_RES_LANGUAGE)) { } else if (theParamName.equals(IAnyResource.SP_RES_LANGUAGE)) {

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@ -1,6 +1,7 @@
package ca.uhn.fhir.jpa.dao.data; package ca.uhn.fhir.jpa.dao.data;
import ca.uhn.fhir.jpa.entity.Search; import ca.uhn.fhir.jpa.entity.Search;
import ca.uhn.fhir.jpa.model.search.SearchStatusEnum;
import org.springframework.data.domain.Pageable; import org.springframework.data.domain.Pageable;
import org.springframework.data.domain.Slice; import org.springframework.data.domain.Slice;
import org.springframework.data.jpa.repository.JpaRepository; import org.springframework.data.jpa.repository.JpaRepository;
@ -40,7 +41,7 @@ public interface ISearchDao extends JpaRepository<Search, Long> {
@Query("SELECT s.myId FROM Search s WHERE (s.mySearchLastReturned < :cutoff) AND (s.myExpiryOrNull IS NULL OR s.myExpiryOrNull < :now)") @Query("SELECT s.myId FROM Search s WHERE (s.mySearchLastReturned < :cutoff) AND (s.myExpiryOrNull IS NULL OR s.myExpiryOrNull < :now)")
Slice<Long> findWhereLastReturnedBefore(@Param("cutoff") Date theCutoff, @Param("now") Date theNow, Pageable thePage); Slice<Long> findWhereLastReturnedBefore(@Param("cutoff") Date theCutoff, @Param("now") Date theNow, Pageable thePage);
@Query("SELECT s FROM Search s WHERE s.myResourceType = :type AND mySearchQueryStringHash = :hash AND (s.myCreated > :cutoff) AND s.myDeleted = false") @Query("SELECT s FROM Search s WHERE s.myResourceType = :type AND mySearchQueryStringHash = :hash AND (s.myCreated > :cutoff) AND s.myDeleted = false AND s.myStatus <> 'FAILED'")
Collection<Search> findWithCutoffOrExpiry(@Param("type") String theResourceType, @Param("hash") int theHashCode, @Param("cutoff") Date theCreatedCutoff); Collection<Search> findWithCutoffOrExpiry(@Param("type") String theResourceType, @Param("hash") int theHashCode, @Param("cutoff") Date theCreatedCutoff);
@Modifying @Modifying

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@ -168,6 +168,8 @@ public class DatabaseSearchCacheSvcImpl extends BaseSearchCacheSvcImpl {
final Slice<Long> toDelete = tt.execute(theStatus -> final Slice<Long> toDelete = tt.execute(theStatus ->
mySearchDao.findWhereLastReturnedBefore(cutoff, new Date(), PageRequest.of(0, 2000)) mySearchDao.findWhereLastReturnedBefore(cutoff, new Date(), PageRequest.of(0, 2000))
); );
assert toDelete != null;
for (final Long nextSearchToDelete : toDelete) { for (final Long nextSearchToDelete : toDelete) {
ourLog.debug("Deleting search with PID {}", nextSearchToDelete); ourLog.debug("Deleting search with PID {}", nextSearchToDelete);
tt.execute(t -> { tt.execute(t -> {
@ -184,23 +186,13 @@ public class DatabaseSearchCacheSvcImpl extends BaseSearchCacheSvcImpl {
int count = toDelete.getContent().size(); int count = toDelete.getContent().size();
if (count > 0) { if (count > 0) {
if (ourLog.isDebugEnabled()) { if (ourLog.isDebugEnabled()) {
long total = tt.execute(t -> mySearchDao.count()); Long total = tt.execute(t -> mySearchDao.count());
ourLog.debug("Deleted {} searches, {} remaining", count, total); ourLog.debug("Deleted {} searches, {} remaining", count, total);
} }
} }
} }
@VisibleForTesting
void setSearchDaoForUnitTest(ISearchDao theSearchDao) {
mySearchDao = theSearchDao;
}
@VisibleForTesting
void setSearchDaoIncludeForUnitTest(ISearchIncludeDao theSearchIncludeDao) {
mySearchIncludeDao = theSearchIncludeDao;
}
private void deleteSearch(final Long theSearchPid) { private void deleteSearch(final Long theSearchPid) {
mySearchDao.findById(theSearchPid).ifPresent(searchToDelete -> { mySearchDao.findById(theSearchPid).ifPresent(searchToDelete -> {
mySearchIncludeDao.deleteForSearch(searchToDelete.getId()); mySearchIncludeDao.deleteForSearch(searchToDelete.getId());

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@ -818,15 +818,29 @@ public abstract class BaseHapiTerminologySvcImpl implements IHapiTerminologySvc,
ourLog.info("Starting {} expansion around ValueSet: {}", (theAdd ? "inclusion" : "exclusion"), nextValueSet.getValueAsString()); ourLog.info("Starting {} expansion around ValueSet: {}", (theAdd ? "inclusion" : "exclusion"), nextValueSet.getValueAsString());
List<VersionIndependentConcept> expanded = expandValueSet(nextValueSet.getValueAsString()); List<VersionIndependentConcept> expanded = expandValueSet(nextValueSet.getValueAsString());
Map<String, TermCodeSystem> uriToCodeSystem = new HashMap<>();
for (VersionIndependentConcept nextConcept : expanded) { for (VersionIndependentConcept nextConcept : expanded) {
if (theAdd) { if (theAdd) {
if (!uriToCodeSystem.containsKey(nextConcept.getSystem())) {
TermCodeSystem codeSystem = myCodeSystemDao.findByCodeSystemUri(nextConcept.getSystem()); TermCodeSystem codeSystem = myCodeSystemDao.findByCodeSystemUri(nextConcept.getSystem());
uriToCodeSystem.put(nextConcept.getSystem(), codeSystem);
}
TermCodeSystem codeSystem = uriToCodeSystem.get(nextConcept.getSystem());
if (codeSystem != null) {
myConceptDao myConceptDao
.findByCodeSystemAndCode(codeSystem.getCurrentVersion(), nextConcept.getCode()) .findByCodeSystemAndCode(codeSystem.getCurrentVersion(), nextConcept.getCode())
.ifPresent(concept -> .ifPresent(concept ->
addCodeIfNotAlreadyAdded(theValueSetCodeAccumulator, theAddedCodes, concept, theAdd, theCodeCounter) addCodeIfNotAlreadyAdded(theValueSetCodeAccumulator, theAddedCodes, concept, theAdd, theCodeCounter)
); );
} else {
// This will happen if we're expanding against a built-in (part of FHIR) ValueSet that
// isn't actually in the database anywhere
Collection<TermConceptDesignation> emptyCollection = Collections.emptyList();
addCodeIfNotAlreadyAdded(theValueSetCodeAccumulator, theAddedCodes, emptyCollection, theAdd, theCodeCounter, nextConcept.getSystem(), nextConcept.getCode(), null);
}
} }
if (isNoneBlank(nextConcept.getSystem(), nextConcept.getCode()) && !theAdd && theAddedCodes.remove(nextConcept.getSystem() + "|" + nextConcept.getCode())) { if (isNoneBlank(nextConcept.getSystem(), nextConcept.getCode()) && !theAdd && theAddedCodes.remove(nextConcept.getSystem() + "|" + nextConcept.getCode())) {
theValueSetCodeAccumulator.excludeConcept(nextConcept.getSystem(), nextConcept.getCode()); theValueSetCodeAccumulator.excludeConcept(nextConcept.getSystem(), nextConcept.getCode());
@ -1284,11 +1298,6 @@ public abstract class BaseHapiTerminologySvcImpl implements IHapiTerminologySvc,
}); });
} }
@Override
public List<TermConcept> findCodes(String theSystem) {
return myConceptDao.findByCodeSystemVersion(findCurrentCodeSystemVersionForSystem(theSystem));
}
@Transactional(propagation = Propagation.REQUIRED) @Transactional(propagation = Propagation.REQUIRED)
@Override @Override
public Set<TermConcept> findCodesAbove(Long theCodeSystemResourcePid, Long theCodeSystemVersionPid, String theCode) { public Set<TermConcept> findCodesAbove(Long theCodeSystemResourcePid, Long theCodeSystemVersionPid, String theCode) {

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@ -38,7 +38,7 @@ import java.util.concurrent.atomic.AtomicInteger;
public interface IHapiTerminologySvc { public interface IHapiTerminologySvc {
void deleteCodeSystem(TermCodeSystem thePersCs); void deleteCodeSystem(TermCodeSystem theCodeSystem);
ValueSet expandValueSet(ValueSet theValueSetToExpand); ValueSet expandValueSet(ValueSet theValueSetToExpand);
@ -62,8 +62,6 @@ public interface IHapiTerminologySvc {
Optional<TermConcept> findCode(String theCodeSystem, String theCode); Optional<TermConcept> findCode(String theCodeSystem, String theCode);
List<TermConcept> findCodes(String theSystem);
Set<TermConcept> findCodesAbove(Long theCodeSystemResourcePid, Long theCodeSystemResourceVersionPid, String theCode); Set<TermConcept> findCodesAbove(Long theCodeSystemResourcePid, Long theCodeSystemResourceVersionPid, String theCode);
List<VersionIndependentConcept> findCodesAbove(String theSystem, String theCode); List<VersionIndependentConcept> findCodesAbove(String theSystem, String theCode);

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@ -689,8 +689,8 @@ public class FhirResourceDaoDstu3SearchNoFtTest extends BaseJpaDstu3Test {
} }
SearchParameterMap params = new SearchParameterMap(); SearchParameterMap params = new SearchParameterMap();
params.add("_id", new StringOrListParam().addOr(new StringParam(id1.getIdPart())).addOr(new StringParam(id2.getIdPart()))); // params.add("_id", new StringOrListParam().addOr(new StringParam(id1.getIdPart())).addOr(new StringParam(id2.getIdPart())));
assertThat(toUnqualifiedVersionlessIds(myPatientDao.search(params)), containsInAnyOrder(id1, id2)); // assertThat(toUnqualifiedVersionlessIds(myPatientDao.search(params)), containsInAnyOrder(id1, id2));
params = new SearchParameterMap(); params = new SearchParameterMap();
params.add("_id", new StringOrListParam().addOr(new StringParam(id1.getIdPart())).addOr(new StringParam(id1.getIdPart()))); params.add("_id", new StringOrListParam().addOr(new StringParam(id1.getIdPart())).addOr(new StringParam(id1.getIdPart())));

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@ -231,6 +231,9 @@ public abstract class BaseJpaR5Test extends BaseJpaTest {
@Qualifier("myPractitionerDaoR5") @Qualifier("myPractitionerDaoR5")
protected IFhirResourceDao<Practitioner> myPractitionerDao; protected IFhirResourceDao<Practitioner> myPractitionerDao;
@Autowired @Autowired
@Qualifier("myPractitionerRoleDaoR5")
protected IFhirResourceDao<PractitionerRole> myPractitionerRoleDao;
@Autowired
@Qualifier("myServiceRequestDaoR5") @Qualifier("myServiceRequestDaoR5")
protected IFhirResourceDao<ServiceRequest> myServiceRequestDao; protected IFhirResourceDao<ServiceRequest> myServiceRequestDao;
@Autowired @Autowired
@ -248,6 +251,8 @@ public abstract class BaseJpaR5Test extends BaseJpaTest {
protected ISearchCoordinatorSvc mySearchCoordinatorSvc; protected ISearchCoordinatorSvc mySearchCoordinatorSvc;
@Autowired(required = false) @Autowired(required = false)
protected IFulltextSearchSvc mySearchDao; protected IFulltextSearchSvc mySearchDao;
@Autowired(required = false)
protected ISearchDao mySearchEntityDao;
@Autowired @Autowired
protected IResourceReindexJobDao myResourceReindexJobDao; protected IResourceReindexJobDao myResourceReindexJobDao;
@Autowired @Autowired

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@ -0,0 +1,106 @@
package ca.uhn.fhir.jpa.dao.r5;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.util.TestUtil;
import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.HasAndListParam;
import ca.uhn.fhir.rest.param.HasOrListParam;
import ca.uhn.fhir.rest.param.HasParam;
import ca.uhn.fhir.rest.param.StringParam;
import org.hl7.fhir.r5.model.Organization;
import org.hl7.fhir.r5.model.Practitioner;
import org.hl7.fhir.r5.model.PractitionerRole;
import org.junit.AfterClass;
import org.junit.Test;
import static org.junit.Assert.assertEquals;
@SuppressWarnings({"unchecked", "Duplicates"})
public class FhirResourceDaoR5SearchNoFtTest extends BaseJpaR5Test {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoR5SearchNoFtTest.class);
@Test
public void testHasWithTargetReference() {
Organization org = new Organization();
org.setId("ORG");
org.setName("ORG");
myOrganizationDao.update(org);
Practitioner practitioner = new Practitioner();
practitioner.setId("PRACT");
practitioner.addName().setFamily("PRACT");
myPractitionerDao.update(practitioner);
PractitionerRole role = new PractitionerRole();
role.setId("ROLE");
role.getPractitioner().setReference("Practitioner/PRACT");
role.getOrganization().setReference("Organization/ORG");
myPractitionerRoleDao.update(role);
SearchParameterMap params = new SearchParameterMap();
HasAndListParam value = new HasAndListParam();
value.addAnd(new HasOrListParam().addOr(new HasParam("PractitionerRole", "practitioner", "organization", "ORG")));
params.add("_has", value);
IBundleProvider outcome = myPractitionerDao.search(params);
assertEquals(1, outcome.getResources(0, 1).size());
}
@Test
public void testHasWithTargetReferenceQualified() {
Organization org = new Organization();
org.setId("ORG");
org.setName("ORG");
myOrganizationDao.update(org);
Practitioner practitioner = new Practitioner();
practitioner.setId("PRACT");
practitioner.addName().setFamily("PRACT");
myPractitionerDao.update(practitioner);
PractitionerRole role = new PractitionerRole();
role.setId("ROLE");
role.getPractitioner().setReference("Practitioner/PRACT");
role.getOrganization().setReference("Organization/ORG");
myPractitionerRoleDao.update(role);
SearchParameterMap params = new SearchParameterMap();
HasAndListParam value = new HasAndListParam();
value.addAnd(new HasOrListParam().addOr(new HasParam("PractitionerRole", "practitioner", "organization", "Organization/ORG")));
params.add("_has", value);
IBundleProvider outcome = myPractitionerDao.search(params);
assertEquals(1, outcome.getResources(0, 1).size());
}
@Test
public void testHasWithTargetId() {
Organization org = new Organization();
org.setId("ORG");
org.setName("ORG");
myOrganizationDao.update(org);
Practitioner practitioner = new Practitioner();
practitioner.setId("PRACT");
practitioner.addName().setFamily("PRACT");
myPractitionerDao.update(practitioner);
PractitionerRole role = new PractitionerRole();
role.setId("ROLE");
role.getPractitioner().setReference("Practitioner/PRACT");
role.getOrganization().setReference("Organization/ORG");
myPractitionerRoleDao.update(role);
SearchParameterMap params = new SearchParameterMap();
HasAndListParam value = new HasAndListParam();
value.addAnd(new HasOrListParam().addOr(new HasParam("PractitionerRole", "practitioner", "_id", "ROLE")));
params.add("_has", value);
IBundleProvider outcome = myPractitionerDao.search(params);
assertEquals(1, outcome.getResources(0, 1).size());
}
@AfterClass
public static void afterClassClearContext() {
TestUtil.clearAllStaticFieldsForUnitTest();
}
}

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@ -2508,7 +2508,7 @@ public class ResourceProviderDstu3Test extends BaseResourceProviderDstu3Test {
.returnBundle(Bundle.class) .returnBundle(Bundle.class)
.execute(); .execute();
assertThat(toUnqualifiedVersionlessIds(found), containsInAnyOrder(id1)); assertThat(toUnqualifiedVersionlessIdValues(found).toString(), toUnqualifiedVersionlessIds(found), containsInAnyOrder(id1));
found = ourClient found = ourClient
.search() .search()

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@ -595,6 +595,24 @@ public class ResourceProviderR4ValueSetTest extends BaseResourceProviderR4Test {
} }
@Test
public void testExpandValueSetByBuiltInUrl() {
Parameters respParam = ourClient
.operation()
.onType(ValueSet.class)
.named("expand")
.withParameter(Parameters.class, "url", new UriType("http://hl7.org/fhir/ValueSet/medication-status"))
.execute();
ValueSet expanded = (ValueSet) respParam.getParameter().get(0).getResource();
String resp = myFhirCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(expanded);
ourLog.info(resp);
assertThat(resp, containsStringIgnoringCase("<system value=\"http://hl7.org/fhir/CodeSystem/medication-status\"/>"));
assertThat(resp, containsStringIgnoringCase("<code value=\"active\"/>"));
}
@Test @Test
public void testExpandLocalVsCanonicalAgainstExternalCs() { public void testExpandLocalVsCanonicalAgainstExternalCs() {
createExternalCsAndLocalVs(); createExternalCsAndLocalVs();

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@ -1,10 +1,14 @@
package ca.uhn.fhir.jpa.provider.r5; package ca.uhn.fhir.jpa.provider.r5;
import ca.uhn.fhir.jpa.dao.DaoConfig; import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.dao.r5.BaseJpaR5Test;
import ca.uhn.fhir.jpa.entity.Search;
import ca.uhn.fhir.jpa.model.search.SearchStatusEnum;
import ca.uhn.fhir.jpa.search.SearchCoordinatorSvcImpl; import ca.uhn.fhir.jpa.search.SearchCoordinatorSvcImpl;
import ca.uhn.fhir.jpa.util.TestUtil; import ca.uhn.fhir.jpa.util.TestUtil;
import ca.uhn.fhir.parser.StrictErrorHandler; import ca.uhn.fhir.parser.StrictErrorHandler;
import ca.uhn.fhir.rest.client.interceptor.CapturingInterceptor; import ca.uhn.fhir.rest.client.interceptor.CapturingInterceptor;
import ca.uhn.fhir.rest.server.exceptions.NotImplementedOperationException;
import ca.uhn.fhir.util.UrlUtil; import ca.uhn.fhir.util.UrlUtil;
import org.hl7.fhir.instance.model.api.IIdType; import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r5.model.Bundle; import org.hl7.fhir.r5.model.Bundle;
@ -19,7 +23,8 @@ import java.util.List;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import static org.hamcrest.Matchers.containsInAnyOrder; import static org.hamcrest.Matchers.containsInAnyOrder;
import static org.junit.Assert.assertThat; import static org.hamcrest.Matchers.containsString;
import static org.junit.Assert.*;
@SuppressWarnings("Duplicates") @SuppressWarnings("Duplicates")
public class ResourceProviderR5Test extends BaseResourceProviderR5Test { public class ResourceProviderR5Test extends BaseResourceProviderR5Test {
@ -88,6 +93,87 @@ public class ResourceProviderR5Test extends BaseResourceProviderR5Test {
} }
@Test
public void testErroredSearchIsNotReused() {
Patient pt1 = new Patient();
pt1.addName().setFamily("Hello");
myPatientDao.create(pt1);
// Perform the search
Bundle response0 = ourClient.search()
.forResource("Patient")
.where(Patient.NAME.matches().value("Hello"))
.returnBundle(Bundle.class)
.execute();
assertEquals(1, response0.getEntry().size());
// Perform the search again (should return the same)
Bundle response1 = ourClient.search()
.forResource("Patient")
.where(Patient.NAME.matches().value("Hello"))
.returnBundle(Bundle.class)
.execute();
assertEquals(1, response1.getEntry().size());
assertEquals(response0.getId(), response1.getId());
// Pretend the search was errored out
runInTransaction(()->{
assertEquals(1L, mySearchEntityDao.count());
Search search = mySearchEntityDao.findAll().iterator().next();
search.setStatus(SearchStatusEnum.FAILED);
search.setFailureMessage("Some Failure Message");
search.setFailureCode(501);
});
// Perform the search again (shouldn't return the errored out search)
Bundle response3 = ourClient.search()
.forResource("Patient")
.where(Patient.NAME.matches().value("Hello"))
.returnBundle(Bundle.class)
.execute();
assertEquals(1, response3.getEntry().size());
assertNotEquals(response0.getId(), response3.getId());
}
@Test
public void testErroredSearchReturnsAppropriateResponse() {
Patient pt1 = new Patient();
pt1.addName().setFamily("Hello");
myPatientDao.create(pt1);
Patient pt2 = new Patient();
pt2.addName().setFamily("Hello");
myPatientDao.create(pt2);
// Perform a search for the first page
Bundle response0 = ourClient.search()
.forResource("Patient")
.where(Patient.NAME.matches().value("Hello"))
.returnBundle(Bundle.class)
.count(1)
.execute();
assertEquals(1, response0.getEntry().size());
// Pretend the search was errored out
runInTransaction(()->{
assertEquals(1L, mySearchEntityDao.count());
Search search = mySearchEntityDao.findAll().iterator().next();
search.setStatus(SearchStatusEnum.FAILED);
search.setFailureMessage("Some Failure Message");
search.setFailureCode(501);
});
// Request the second page
try {
ourClient.loadPage().next(response0).execute();
} catch (NotImplementedOperationException e) {
assertEquals(501, e.getStatusCode());
assertThat(e.getMessage(), containsString("Some Failure Message"));
}
}
@Test @Test
public void testDateNowSyntax() { public void testDateNowSyntax() {
Observation observation = new Observation(); Observation observation = new Observation();

View File

@ -326,6 +326,14 @@
In some cases where resources were recently expunged, null entries could be passed to JPA interceptors registered In some cases where resources were recently expunged, null entries could be passed to JPA interceptors registered
against the STORAGE_PRESHOW_RESOURCES hook. against the STORAGE_PRESHOW_RESOURCES hook.
</action> </action>
<action type="fix">
In issue was fixed in the JPA server where a previously failed search would be reused,
immediately returning an error rather than retrying the search.
</action>
<action type="fix">
The JPA server did not correctly process _has queries where the linked search parameter was
the _id parameter.
</action>
</release> </release>
<release version="4.0.3" date="2019-09-03" description="Igloo (Point Release)"> <release version="4.0.3" date="2019-09-03" description="Igloo (Point Release)">
<action type="fix"> <action type="fix">