batch2 management operations api (#3742)
* first test passes. onto the next one * two down two to go * three down one to go * licenses * basic admin-json plumbing confirmed with IT * FIXME * FIXME * FIXME * FIXME * changelog * bump hapi version to 6.1.0-PRE6-SNAPSHOT Co-authored-by: Ken Stevens <ken@smilecdr.com>
This commit is contained in:
parent
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069f20a5f7
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@ -4,7 +4,7 @@
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<artifactId>hapi-fhir</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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@ -5,7 +5,7 @@
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -5,7 +5,7 @@
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -1,5 +1,25 @@
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package ca.uhn.fhir.model.api;
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package ca.uhn.fhir.model.api;
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/*-
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* #%L
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* HAPI FHIR - Core Library
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* %%
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* Copyright (C) 2014 - 2022 Smile CDR, Inc.
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import ca.uhn.fhir.i18n.Msg;
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import ca.uhn.fhir.i18n.Msg;
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import java.util.Iterator;
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import java.util.Iterator;
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@ -6,7 +6,7 @@
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -25,6 +25,10 @@ import org.springframework.batch.core.JobExecution;
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import org.springframework.batch.core.JobParameters;
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import org.springframework.batch.core.JobParameters;
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import org.springframework.batch.core.JobParametersInvalidException;
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import org.springframework.batch.core.JobParametersInvalidException;
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/**
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* @deprecated we are in the process of converting to batch2
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*/
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@Deprecated
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public interface IBatchJobSubmitter {
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public interface IBatchJobSubmitter {
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/**
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/**
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@ -37,6 +37,10 @@ import org.springframework.transaction.annotation.Transactional;
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import static org.slf4j.LoggerFactory.getLogger;
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import static org.slf4j.LoggerFactory.getLogger;
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/**
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* @deprecated we are in the process of converting to batch2
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*/
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@Deprecated
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public class BatchJobSubmitterImpl implements IBatchJobSubmitter {
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public class BatchJobSubmitterImpl implements IBatchJobSubmitter {
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private static final Logger ourLog = getLogger(BatchJobSubmitterImpl.class);
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private static final Logger ourLog = getLogger(BatchJobSubmitterImpl.class);
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@ -3,14 +3,14 @@
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<modelVersion>4.0.0</modelVersion>
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<modelVersion>4.0.0</modelVersion>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-bom</artifactId>
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<artifactId>hapi-fhir-bom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<packaging>pom</packaging>
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<packaging>pom</packaging>
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<name>HAPI FHIR BOM</name>
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<name>HAPI FHIR BOM</name>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -5,7 +5,7 @@
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<artifactId>hapi-fhir</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -6,7 +6,7 @@
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-cli</artifactId>
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<artifactId>hapi-fhir-cli</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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@ -6,7 +6,7 @@
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../../hapi-deployable-pom</relativePath>
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<relativePath>../../hapi-deployable-pom</relativePath>
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</parent>
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</parent>
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@ -22,9 +22,9 @@ package ca.uhn.fhir.jpa.demo;
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import ca.uhn.fhir.jpa.api.config.DaoConfig;
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import ca.uhn.fhir.jpa.api.config.DaoConfig;
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import ca.uhn.fhir.jpa.model.config.PartitionSettings;
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import ca.uhn.fhir.jpa.model.config.PartitionSettings;
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import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
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import ca.uhn.fhir.jpa.model.entity.ModelConfig;
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import ca.uhn.fhir.jpa.model.entity.ModelConfig;
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import org.apache.commons.dbcp2.BasicDataSource;
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import org.apache.commons.dbcp2.BasicDataSource;
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import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
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import org.hibernate.search.mapper.orm.cfg.HibernateOrmMapperSettings;
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import org.hibernate.search.mapper.orm.cfg.HibernateOrmMapperSettings;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Bean;
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import org.springframework.context.annotation.Configuration;
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import org.springframework.context.annotation.Configuration;
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<artifactId>hapi-fhir</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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package ca.uhn.fhir.okhttp.client;
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package ca.uhn.fhir.okhttp.client;
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/*-
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* #%L
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* HAPI FHIR OkHttp Client
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* %%
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* Copyright (C) 2014 - 2022 Smile CDR, Inc.
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.rest.api.Constants;
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import ca.uhn.fhir.rest.api.Constants;
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import ca.uhn.fhir.rest.api.EncodingEnum;
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import ca.uhn.fhir.rest.api.EncodingEnum;
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<artifactId>hapi-fhir</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -0,0 +1,4 @@
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---
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type: add
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issue: 3742
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title: "Added operations to batch2 api for searching job instances."
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<modelVersion>4.0.0</modelVersion>
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@ -5,7 +5,7 @@
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE5-SNAPSHOT</version>
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<version>6.1.0-PRE6-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -21,6 +21,7 @@ package ca.uhn.fhir.jpa.batch2;
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*/
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*/
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import ca.uhn.fhir.batch2.api.IJobPersistence;
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import ca.uhn.fhir.batch2.api.IJobPersistence;
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||||||
|
import ca.uhn.fhir.batch2.api.JobOperationResultJson;
|
||||||
import ca.uhn.fhir.batch2.coordinator.BatchWorkChunk;
|
import ca.uhn.fhir.batch2.coordinator.BatchWorkChunk;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
import ca.uhn.fhir.batch2.model.StatusEnum;
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
|
@ -42,6 +43,7 @@ import java.util.Date;
|
||||||
import java.util.Iterator;
|
import java.util.Iterator;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
import java.util.Optional;
|
import java.util.Optional;
|
||||||
|
import java.util.Set;
|
||||||
import java.util.UUID;
|
import java.util.UUID;
|
||||||
import java.util.function.Consumer;
|
import java.util.function.Consumer;
|
||||||
import java.util.stream.Collectors;
|
import java.util.stream.Collectors;
|
||||||
|
@ -111,6 +113,21 @@ public class JpaJobPersistenceImpl implements IJobPersistence {
|
||||||
return fetchInstance(theInstanceId);
|
return fetchInstance(theInstanceId);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public List<JobInstance> fetchInstancesByJobDefinitionIdAndStatus(String theJobDefinitionId, Set<StatusEnum> theRequestedStatuses, int thePageSize, int thePageIndex) {
|
||||||
|
PageRequest pageRequest = PageRequest.of(thePageIndex, thePageSize, Sort.Direction.ASC, "myCreateTime");
|
||||||
|
return toInstanceList(myJobInstanceRepository.fetchInstancesByJobDefinitionIdAndStatus(theJobDefinitionId, theRequestedStatuses, pageRequest));
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public List<JobInstance> fetchInstancesByJobDefinitionId(String theJobDefinitionId, int thePageSize, int thePageIndex) {
|
||||||
|
PageRequest pageRequest = PageRequest.of(thePageIndex, thePageSize, Sort.Direction.ASC, "myCreateTime");
|
||||||
|
return toInstanceList(myJobInstanceRepository.findInstancesByJobDefinitionId(theJobDefinitionId, pageRequest));
|
||||||
|
}
|
||||||
|
|
||||||
|
private List<JobInstance> toInstanceList(List<Batch2JobInstanceEntity> theInstancesByJobDefinitionId) {
|
||||||
|
return theInstancesByJobDefinitionId.stream().map(this::toInstance).collect(Collectors.toList());
|
||||||
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
@Nonnull
|
@Nonnull
|
||||||
public Optional<JobInstance> fetchInstance(String theInstanceId) {
|
public Optional<JobInstance> fetchInstance(String theInstanceId) {
|
||||||
|
@ -264,7 +281,19 @@ public class JpaJobPersistenceImpl implements IJobPersistence {
|
||||||
}
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public void cancelInstance(String theInstanceId) {
|
public JobOperationResultJson cancelInstance(String theInstanceId) {
|
||||||
myJobInstanceRepository.updateInstanceCancelled(theInstanceId, true);
|
int recordsChanged = myJobInstanceRepository.updateInstanceCancelled(theInstanceId, true);
|
||||||
|
String operationString = "Cancel job instance " + theInstanceId;
|
||||||
|
|
||||||
|
if (recordsChanged > 0) {
|
||||||
|
return JobOperationResultJson.newSuccess(operationString, "Job instance <" + theInstanceId + "> successfully cancelled.");
|
||||||
|
} else {
|
||||||
|
Optional<JobInstance> instance = fetchInstance(theInstanceId);
|
||||||
|
if (instance.isPresent()) {
|
||||||
|
return JobOperationResultJson.newFailure(operationString, "Job instance <" + theInstanceId + "> was already cancelled. Nothing to do.");
|
||||||
|
} else {
|
||||||
|
return JobOperationResultJson.newFailure(operationString, "Job instance <" + theInstanceId + "> not found.");
|
||||||
|
}
|
||||||
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -20,7 +20,8 @@ package ca.uhn.fhir.jpa.dao;
|
||||||
* #L%
|
* #L%
|
||||||
*/
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.context.*;
|
import ca.uhn.fhir.context.FhirContext;
|
||||||
|
import ca.uhn.fhir.context.RuntimeSearchParam;
|
||||||
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
||||||
import ca.uhn.fhir.jpa.model.cross.IBasePersistedResource;
|
import ca.uhn.fhir.jpa.model.cross.IBasePersistedResource;
|
||||||
import ca.uhn.fhir.jpa.model.entity.ResourceIndexedSearchParamToken;
|
import ca.uhn.fhir.jpa.model.entity.ResourceIndexedSearchParamToken;
|
||||||
|
@ -31,10 +32,16 @@ import ca.uhn.fhir.jpa.search.lastn.json.ObservationJson;
|
||||||
import ca.uhn.fhir.jpa.searchparam.extractor.ISearchParamExtractor;
|
import ca.uhn.fhir.jpa.searchparam.extractor.ISearchParamExtractor;
|
||||||
import ca.uhn.fhir.jpa.searchparam.extractor.PathAndRef;
|
import ca.uhn.fhir.jpa.searchparam.extractor.PathAndRef;
|
||||||
import ca.uhn.fhir.parser.IParser;
|
import ca.uhn.fhir.parser.IParser;
|
||||||
import org.hl7.fhir.instance.model.api.*;
|
import org.hl7.fhir.instance.model.api.IBase;
|
||||||
|
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||||
import org.springframework.beans.factory.annotation.Autowired;
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
|
|
||||||
import java.util.*;
|
import java.util.ArrayList;
|
||||||
|
import java.util.Date;
|
||||||
|
import java.util.List;
|
||||||
|
import java.util.Objects;
|
||||||
|
import java.util.Optional;
|
||||||
|
import java.util.UUID;
|
||||||
|
|
||||||
public class ObservationLastNIndexPersistSvc {
|
public class ObservationLastNIndexPersistSvc {
|
||||||
|
|
||||||
|
|
|
@ -22,11 +22,15 @@ package ca.uhn.fhir.jpa.dao.data;
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.model.StatusEnum;
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
import ca.uhn.fhir.jpa.entity.Batch2JobInstanceEntity;
|
import ca.uhn.fhir.jpa.entity.Batch2JobInstanceEntity;
|
||||||
|
import org.springframework.data.domain.Pageable;
|
||||||
import org.springframework.data.jpa.repository.JpaRepository;
|
import org.springframework.data.jpa.repository.JpaRepository;
|
||||||
import org.springframework.data.jpa.repository.Modifying;
|
import org.springframework.data.jpa.repository.Modifying;
|
||||||
import org.springframework.data.jpa.repository.Query;
|
import org.springframework.data.jpa.repository.Query;
|
||||||
import org.springframework.data.repository.query.Param;
|
import org.springframework.data.repository.query.Param;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
import java.util.Set;
|
||||||
|
|
||||||
public interface IBatch2JobInstanceRepository extends JpaRepository<Batch2JobInstanceEntity, String>, IHapiFhirJpaRepository {
|
public interface IBatch2JobInstanceRepository extends JpaRepository<Batch2JobInstanceEntity, String>, IHapiFhirJpaRepository {
|
||||||
|
|
||||||
@Modifying
|
@Modifying
|
||||||
|
@ -35,9 +39,15 @@ public interface IBatch2JobInstanceRepository extends JpaRepository<Batch2JobIns
|
||||||
|
|
||||||
@Modifying
|
@Modifying
|
||||||
@Query("UPDATE Batch2JobInstanceEntity e SET e.myCancelled = :cancelled WHERE e.myId = :id")
|
@Query("UPDATE Batch2JobInstanceEntity e SET e.myCancelled = :cancelled WHERE e.myId = :id")
|
||||||
void updateInstanceCancelled(@Param("id") String theInstanceId, @Param("cancelled") boolean theCancelled);
|
int updateInstanceCancelled(@Param("id") String theInstanceId, @Param("cancelled") boolean theCancelled);
|
||||||
|
|
||||||
@Modifying
|
@Modifying
|
||||||
@Query("UPDATE Batch2JobInstanceEntity e SET e.myCurrentGatedStepId = :currentGatedStepId WHERE e.myId = :id")
|
@Query("UPDATE Batch2JobInstanceEntity e SET e.myCurrentGatedStepId = :currentGatedStepId WHERE e.myId = :id")
|
||||||
void updateInstanceCurrentGatedStepId(@Param("id") String theInstanceId, @Param("currentGatedStepId") String theCurrentGatedStepId);
|
void updateInstanceCurrentGatedStepId(@Param("id") String theInstanceId, @Param("currentGatedStepId") String theCurrentGatedStepId);
|
||||||
|
|
||||||
|
@Query("SELECT e FROM Batch2JobInstanceEntity e WHERE e.myDefinitionId = :jobDefinitionId AND e.myStatus IN :statuses")
|
||||||
|
List<Batch2JobInstanceEntity> fetchInstancesByJobDefinitionIdAndStatus(@Param("jobDefinitionId") String theJobDefinitionId, @Param("statuses") Set<StatusEnum> theIncompleteStatuses, Pageable thePageRequest);
|
||||||
|
|
||||||
|
@Query("SELECT e FROM Batch2JobInstanceEntity e WHERE e.myDefinitionId = :jobDefinitionId")
|
||||||
|
List<Batch2JobInstanceEntity> findInstancesByJobDefinitionId(@Param("jobDefinitionId") String theJobDefinitionId, Pageable thePageRequest);
|
||||||
}
|
}
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.jpa.dao.search;
|
package ca.uhn.fhir.jpa.dao.search;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.context.RuntimeSearchParam;
|
import ca.uhn.fhir.context.RuntimeSearchParam;
|
||||||
import ca.uhn.fhir.rest.api.RestSearchParameterTypeEnum;
|
import ca.uhn.fhir.rest.api.RestSearchParameterTypeEnum;
|
||||||
import ca.uhn.fhir.rest.api.SortOrderEnum;
|
import ca.uhn.fhir.rest.api.SortOrderEnum;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.jpa.dao.search;
|
package ca.uhn.fhir.jpa.dao.search;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.rest.api.SortSpec;
|
import ca.uhn.fhir.rest.api.SortSpec;
|
||||||
import org.hibernate.search.engine.search.sort.dsl.SearchSortFactory;
|
import org.hibernate.search.engine.search.sort.dsl.SearchSortFactory;
|
||||||
import org.hibernate.search.engine.search.sort.dsl.SortFinalStep;
|
import org.hibernate.search.engine.search.sort.dsl.SortFinalStep;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.jpa.search;
|
package ca.uhn.fhir.jpa.search;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
||||||
import ca.uhn.fhir.jpa.api.svc.ISearchSvc;
|
import ca.uhn.fhir.jpa.api.svc.ISearchSvc;
|
||||||
import ca.uhn.fhir.jpa.dao.ISearchBuilder;
|
import ca.uhn.fhir.jpa.dao.ISearchBuilder;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.jpa.search;
|
package ca.uhn.fhir.jpa.search;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.context.FhirContext;
|
import ca.uhn.fhir.context.FhirContext;
|
||||||
import ca.uhn.fhir.i18n.Msg;
|
import ca.uhn.fhir.i18n.Msg;
|
||||||
import ca.uhn.fhir.interceptor.api.HookParams;
|
import ca.uhn.fhir.interceptor.api.HookParams;
|
||||||
|
|
|
@ -20,8 +20,8 @@ package ca.uhn.fhir.jpa.search.elastic;
|
||||||
* #L%
|
* #L%
|
||||||
*/
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.i18n.Msg;
|
|
||||||
import ca.uhn.fhir.context.ConfigurationException;
|
import ca.uhn.fhir.context.ConfigurationException;
|
||||||
|
import ca.uhn.fhir.i18n.Msg;
|
||||||
import ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers;
|
import ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers;
|
||||||
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchRestClientFactory;
|
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchRestClientFactory;
|
||||||
import org.apache.commons.lang3.StringUtils;
|
import org.apache.commons.lang3.StringUtils;
|
||||||
|
@ -30,12 +30,12 @@ import org.elasticsearch.client.RequestOptions;
|
||||||
import org.elasticsearch.client.RestHighLevelClient;
|
import org.elasticsearch.client.RestHighLevelClient;
|
||||||
import org.elasticsearch.client.indices.PutIndexTemplateRequest;
|
import org.elasticsearch.client.indices.PutIndexTemplateRequest;
|
||||||
import org.elasticsearch.common.settings.Settings;
|
import org.elasticsearch.common.settings.Settings;
|
||||||
|
import org.hibernate.search.backend.elasticsearch.cfg.ElasticsearchBackendSettings;
|
||||||
|
import org.hibernate.search.backend.elasticsearch.cfg.ElasticsearchIndexSettings;
|
||||||
import org.hibernate.search.backend.elasticsearch.index.IndexStatus;
|
import org.hibernate.search.backend.elasticsearch.index.IndexStatus;
|
||||||
import org.hibernate.search.engine.cfg.BackendSettings;
|
import org.hibernate.search.engine.cfg.BackendSettings;
|
||||||
import org.hibernate.search.mapper.orm.automaticindexing.session.AutomaticIndexingSynchronizationStrategyNames;
|
import org.hibernate.search.mapper.orm.automaticindexing.session.AutomaticIndexingSynchronizationStrategyNames;
|
||||||
import org.hibernate.search.mapper.orm.cfg.HibernateOrmMapperSettings;
|
import org.hibernate.search.mapper.orm.cfg.HibernateOrmMapperSettings;
|
||||||
import org.hibernate.search.backend.elasticsearch.cfg.ElasticsearchBackendSettings;
|
|
||||||
import org.hibernate.search.backend.elasticsearch.cfg.ElasticsearchIndexSettings;
|
|
||||||
import org.hibernate.search.mapper.orm.schema.management.SchemaManagementStrategyName;
|
import org.hibernate.search.mapper.orm.schema.management.SchemaManagementStrategyName;
|
||||||
import org.slf4j.Logger;
|
import org.slf4j.Logger;
|
||||||
|
|
||||||
|
|
|
@ -20,8 +20,8 @@ package ca.uhn.fhir.jpa.search.elastic;
|
||||||
* #L%
|
* #L%
|
||||||
*/
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.i18n.Msg;
|
|
||||||
import ca.uhn.fhir.context.ConfigurationException;
|
import ca.uhn.fhir.context.ConfigurationException;
|
||||||
|
import ca.uhn.fhir.i18n.Msg;
|
||||||
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
||||||
import org.apache.commons.lang3.StringUtils;
|
import org.apache.commons.lang3.StringUtils;
|
||||||
import org.hibernate.search.backend.elasticsearch.index.layout.IndexLayoutStrategy;
|
import org.hibernate.search.backend.elasticsearch.index.layout.IndexLayoutStrategy;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.jpa.util;
|
package ca.uhn.fhir.jpa.util;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
||||||
import ca.uhn.fhir.rest.api.SearchTotalModeEnum;
|
import ca.uhn.fhir.rest.api.SearchTotalModeEnum;
|
||||||
import ca.uhn.fhir.rest.api.SummaryEnum;
|
import ca.uhn.fhir.rest.api.SummaryEnum;
|
||||||
|
|
|
@ -0,0 +1,70 @@
|
||||||
|
package ca.uhn.fhir.jpa.batch2;
|
||||||
|
|
||||||
|
import ca.uhn.fhir.batch2.api.JobOperationResultJson;
|
||||||
|
import ca.uhn.fhir.jpa.dao.data.IBatch2JobInstanceRepository;
|
||||||
|
import ca.uhn.fhir.jpa.dao.data.IBatch2WorkChunkRepository;
|
||||||
|
import ca.uhn.fhir.jpa.entity.Batch2JobInstanceEntity;
|
||||||
|
import org.junit.jupiter.api.Test;
|
||||||
|
import org.junit.jupiter.api.extension.ExtendWith;
|
||||||
|
import org.mockito.InjectMocks;
|
||||||
|
import org.mockito.Mock;
|
||||||
|
import org.mockito.junit.jupiter.MockitoExtension;
|
||||||
|
|
||||||
|
import java.util.Optional;
|
||||||
|
|
||||||
|
import static org.junit.jupiter.api.Assertions.assertEquals;
|
||||||
|
import static org.junit.jupiter.api.Assertions.assertFalse;
|
||||||
|
import static org.junit.jupiter.api.Assertions.assertTrue;
|
||||||
|
import static org.mockito.Mockito.when;
|
||||||
|
|
||||||
|
@ExtendWith(MockitoExtension.class)
|
||||||
|
class JpaJobPersistenceImplTest {
|
||||||
|
private static final String TEST_INSTANCE_ID = "test-instance-id";
|
||||||
|
@Mock
|
||||||
|
IBatch2JobInstanceRepository myJobInstanceRepository;
|
||||||
|
@Mock
|
||||||
|
IBatch2WorkChunkRepository myWorkChunkRepository;
|
||||||
|
@InjectMocks
|
||||||
|
JpaJobPersistenceImpl mySvc;
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void cancelSuccess() {
|
||||||
|
// setup
|
||||||
|
when(myJobInstanceRepository.updateInstanceCancelled(TEST_INSTANCE_ID, true)).thenReturn(1);
|
||||||
|
|
||||||
|
// execute
|
||||||
|
JobOperationResultJson result = mySvc.cancelInstance(TEST_INSTANCE_ID);
|
||||||
|
|
||||||
|
// validate
|
||||||
|
assertTrue(result.getSuccess());
|
||||||
|
assertEquals("Job instance <test-instance-id> successfully cancelled.", result.getMessage());
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void cancelNotFound() {
|
||||||
|
// setup
|
||||||
|
when(myJobInstanceRepository.updateInstanceCancelled(TEST_INSTANCE_ID, true)).thenReturn(0);
|
||||||
|
when(myJobInstanceRepository.findById(TEST_INSTANCE_ID)).thenReturn(Optional.empty());
|
||||||
|
|
||||||
|
// execute
|
||||||
|
JobOperationResultJson result = mySvc.cancelInstance(TEST_INSTANCE_ID);
|
||||||
|
|
||||||
|
// validate
|
||||||
|
assertFalse(result.getSuccess());
|
||||||
|
assertEquals("Job instance <test-instance-id> not found.", result.getMessage());
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void cancelAlreadyCancelled() {
|
||||||
|
// setup
|
||||||
|
when(myJobInstanceRepository.updateInstanceCancelled(TEST_INSTANCE_ID, true)).thenReturn(0);
|
||||||
|
when(myJobInstanceRepository.findById(TEST_INSTANCE_ID)).thenReturn(Optional.of(new Batch2JobInstanceEntity()));
|
||||||
|
|
||||||
|
// execute
|
||||||
|
JobOperationResultJson result = mySvc.cancelInstance(TEST_INSTANCE_ID);
|
||||||
|
|
||||||
|
// validate
|
||||||
|
assertFalse(result.getSuccess());
|
||||||
|
assertEquals("Job instance <test-instance-id> was already cancelled. Nothing to do.", result.getMessage());
|
||||||
|
}
|
||||||
|
}
|
|
@ -7,7 +7,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -6,7 +6,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhir.jpa.mdm.svc;
|
||||||
|
|
||||||
/*-
|
/*-
|
||||||
* #%L
|
* #%L
|
||||||
* HAPI FHIR JPA Server
|
* HAPI FHIR JPA Server - Master Data Management
|
||||||
* %%
|
* %%
|
||||||
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
* %%
|
* %%
|
||||||
|
|
|
@ -23,7 +23,6 @@ import org.springframework.test.context.TestPropertySource;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
import static org.junit.jupiter.api.Assertions.assertEquals;
|
import static org.junit.jupiter.api.Assertions.assertEquals;
|
||||||
import static org.junit.jupiter.api.Assertions.assertFalse;
|
|
||||||
import static org.junit.jupiter.api.Assertions.assertNotNull;
|
import static org.junit.jupiter.api.Assertions.assertNotNull;
|
||||||
import static org.slf4j.LoggerFactory.getLogger;
|
import static org.slf4j.LoggerFactory.getLogger;
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -6,7 +6,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -1,6 +1,7 @@
|
||||||
package ca.uhn.fhir.jpa.batch2;
|
package ca.uhn.fhir.jpa.batch2;
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
||||||
|
import ca.uhn.fhir.batch2.api.JobOperationResultJson;
|
||||||
import ca.uhn.fhir.batch2.coordinator.BatchWorkChunk;
|
import ca.uhn.fhir.batch2.coordinator.BatchWorkChunk;
|
||||||
import ca.uhn.fhir.batch2.jobs.imprt.NdJsonFileJson;
|
import ca.uhn.fhir.batch2.jobs.imprt.NdJsonFileJson;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
|
@ -20,13 +21,16 @@ import org.springframework.beans.factory.annotation.Autowired;
|
||||||
import javax.annotation.Nonnull;
|
import javax.annotation.Nonnull;
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
import java.util.Date;
|
import java.util.Date;
|
||||||
|
import java.util.HashSet;
|
||||||
import java.util.Iterator;
|
import java.util.Iterator;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
import java.util.Set;
|
||||||
import java.util.stream.Collectors;
|
import java.util.stream.Collectors;
|
||||||
|
|
||||||
import static org.hamcrest.MatcherAssert.assertThat;
|
import static org.hamcrest.MatcherAssert.assertThat;
|
||||||
import static org.hamcrest.Matchers.contains;
|
import static org.hamcrest.Matchers.contains;
|
||||||
import static org.hamcrest.Matchers.empty;
|
import static org.hamcrest.Matchers.empty;
|
||||||
|
import static org.hamcrest.Matchers.hasSize;
|
||||||
import static org.junit.jupiter.api.Assertions.assertEquals;
|
import static org.junit.jupiter.api.Assertions.assertEquals;
|
||||||
import static org.junit.jupiter.api.Assertions.assertFalse;
|
import static org.junit.jupiter.api.Assertions.assertFalse;
|
||||||
import static org.junit.jupiter.api.Assertions.assertNotNull;
|
import static org.junit.jupiter.api.Assertions.assertNotNull;
|
||||||
|
@ -136,7 +140,9 @@ public class JpaJobPersistenceImplTest extends BaseJpaR4Test {
|
||||||
myJobInstanceRepository.save(instanceEntity);
|
myJobInstanceRepository.save(instanceEntity);
|
||||||
});
|
});
|
||||||
|
|
||||||
mySvc.cancelInstance(instanceId);
|
JobOperationResultJson result = mySvc.cancelInstance(instanceId);
|
||||||
|
assertTrue(result.getSuccess());
|
||||||
|
assertEquals("Job instance <" + instanceId + "> successfully cancelled.", result.getMessage());
|
||||||
|
|
||||||
JobInstance foundInstance = mySvc.fetchInstanceAndMarkInProgress(instanceId).orElseThrow(() -> new IllegalStateException());
|
JobInstance foundInstance = mySvc.fetchInstanceAndMarkInProgress(instanceId).orElseThrow(() -> new IllegalStateException());
|
||||||
assertEquals(instanceId, foundInstance.getInstanceId());
|
assertEquals(instanceId, foundInstance.getInstanceId());
|
||||||
|
@ -161,6 +167,29 @@ public class JpaJobPersistenceImplTest extends BaseJpaR4Test {
|
||||||
assertEquals(CHUNK_DATA, foundInstance.getParameters());
|
assertEquals(CHUNK_DATA, foundInstance.getParameters());
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void testFetchInstancesByJobDefinitionId() {
|
||||||
|
JobInstance instance = createInstance();
|
||||||
|
String instanceId = mySvc.storeNewInstance(instance);
|
||||||
|
|
||||||
|
List<JobInstance> foundInstances = mySvc.fetchInstancesByJobDefinitionId(JOB_DEFINITION_ID, 10, 0);
|
||||||
|
assertThat(foundInstances, hasSize(1));
|
||||||
|
assertEquals(instanceId, foundInstances.get(0).getInstanceId());
|
||||||
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
void testFetchInstancesByJobDefinitionIdAndStatus() {
|
||||||
|
JobInstance instance = createInstance();
|
||||||
|
String instanceId = mySvc.storeNewInstance(instance);
|
||||||
|
|
||||||
|
Set<StatusEnum> statuses = new HashSet<>();
|
||||||
|
statuses.add(StatusEnum.QUEUED);
|
||||||
|
statuses.add(StatusEnum.COMPLETED);
|
||||||
|
List<JobInstance> foundInstances = mySvc.fetchInstancesByJobDefinitionIdAndStatus(JOB_DEFINITION_ID, statuses, 10, 0);
|
||||||
|
assertThat(foundInstances, hasSize(1));
|
||||||
|
assertEquals(instanceId, foundInstances.get(0).getInstanceId());
|
||||||
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
public void testFetchChunks() {
|
public void testFetchChunks() {
|
||||||
JobInstance instance = createInstance();
|
JobInstance instance = createInstance();
|
||||||
|
|
|
@ -4,10 +4,11 @@ import ca.uhn.fhir.context.ConfigurationException;
|
||||||
import ca.uhn.fhir.context.FhirContext;
|
import ca.uhn.fhir.context.FhirContext;
|
||||||
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
||||||
import ca.uhn.fhir.jpa.dao.r4.ElasticsearchPrefixTest;
|
import ca.uhn.fhir.jpa.dao.r4.ElasticsearchPrefixTest;
|
||||||
|
import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
|
||||||
import ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers;
|
import ca.uhn.fhir.jpa.search.HapiHSearchAnalysisConfigurers;
|
||||||
import ca.uhn.fhir.jpa.search.elastic.IndexNamePrefixLayoutStrategy;
|
import ca.uhn.fhir.jpa.search.elastic.IndexNamePrefixLayoutStrategy;
|
||||||
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchRestClientFactory;
|
|
||||||
import ca.uhn.fhir.jpa.search.elastic.TestElasticsearchContainerHelper;
|
import ca.uhn.fhir.jpa.search.elastic.TestElasticsearchContainerHelper;
|
||||||
|
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchRestClientFactory;
|
||||||
import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
|
import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
|
||||||
import net.ttddyy.dsproxy.listener.logging.SLF4JLogLevel;
|
import net.ttddyy.dsproxy.listener.logging.SLF4JLogLevel;
|
||||||
import net.ttddyy.dsproxy.support.ProxyDataSourceBuilder;
|
import net.ttddyy.dsproxy.support.ProxyDataSourceBuilder;
|
||||||
|
@ -17,7 +18,6 @@ import org.elasticsearch.client.RequestOptions;
|
||||||
import org.elasticsearch.client.RestHighLevelClient;
|
import org.elasticsearch.client.RestHighLevelClient;
|
||||||
import org.elasticsearch.client.indices.PutIndexTemplateRequest;
|
import org.elasticsearch.client.indices.PutIndexTemplateRequest;
|
||||||
import org.elasticsearch.common.settings.Settings;
|
import org.elasticsearch.common.settings.Settings;
|
||||||
import ca.uhn.fhir.jpa.model.dialect.HapiFhirH2Dialect;
|
|
||||||
import org.hibernate.jpa.HibernatePersistenceProvider;
|
import org.hibernate.jpa.HibernatePersistenceProvider;
|
||||||
import org.hibernate.search.backend.elasticsearch.cfg.ElasticsearchBackendSettings;
|
import org.hibernate.search.backend.elasticsearch.cfg.ElasticsearchBackendSettings;
|
||||||
import org.hibernate.search.backend.elasticsearch.cfg.ElasticsearchIndexSettings;
|
import org.hibernate.search.backend.elasticsearch.cfg.ElasticsearchIndexSettings;
|
||||||
|
|
|
@ -4,11 +4,11 @@ import ca.uhn.fhir.context.FhirContext;
|
||||||
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
||||||
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoObservation;
|
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoObservation;
|
||||||
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoPatient;
|
import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoPatient;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchSvcImpl;
|
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchSvcImpl;
|
||||||
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
||||||
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
||||||
import ca.uhn.fhir.rest.param.DateAndListParam;
|
import ca.uhn.fhir.rest.param.DateAndListParam;
|
||||||
import ca.uhn.fhir.rest.param.DateOrListParam;
|
import ca.uhn.fhir.rest.param.DateOrListParam;
|
||||||
import ca.uhn.fhir.rest.param.DateParam;
|
import ca.uhn.fhir.rest.param.DateParam;
|
||||||
|
|
|
@ -10,13 +10,13 @@ import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoValueSet;
|
||||||
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
||||||
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
|
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
|
||||||
import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportJobSchedulingHelper;
|
import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportJobSchedulingHelper;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.jpa.search.reindex.IResourceReindexingSvc;
|
import ca.uhn.fhir.jpa.search.reindex.IResourceReindexingSvc;
|
||||||
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
||||||
import ca.uhn.fhir.jpa.sp.ISearchParamPresenceSvc;
|
import ca.uhn.fhir.jpa.sp.ISearchParamPresenceSvc;
|
||||||
import ca.uhn.fhir.jpa.term.api.ITermReadSvc;
|
import ca.uhn.fhir.jpa.term.api.ITermReadSvc;
|
||||||
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
||||||
import ca.uhn.fhir.jpa.util.ValueSetTestUtil;
|
import ca.uhn.fhir.jpa.util.ValueSetTestUtil;
|
||||||
import ca.uhn.fhir.rest.api.server.IBundleProvider;
|
import ca.uhn.fhir.rest.api.server.IBundleProvider;
|
||||||
import ca.uhn.fhir.rest.param.StringParam;
|
import ca.uhn.fhir.rest.param.StringParam;
|
||||||
|
|
|
@ -7,7 +7,6 @@ import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoValueSet;
|
||||||
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
||||||
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
|
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
|
||||||
import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportJobSchedulingHelper;
|
import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportJobSchedulingHelper;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.jpa.dao.data.IResourceTableDao;
|
import ca.uhn.fhir.jpa.dao.data.IResourceTableDao;
|
||||||
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
|
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
|
||||||
import ca.uhn.fhir.jpa.entity.TermConcept;
|
import ca.uhn.fhir.jpa.entity.TermConcept;
|
||||||
|
@ -16,6 +15,7 @@ import ca.uhn.fhir.jpa.search.reindex.IResourceReindexingSvc;
|
||||||
import ca.uhn.fhir.jpa.term.api.ITermCodeSystemStorageSvc;
|
import ca.uhn.fhir.jpa.term.api.ITermCodeSystemStorageSvc;
|
||||||
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
||||||
import ca.uhn.fhir.rest.api.server.storage.ResourcePersistentId;
|
import ca.uhn.fhir.rest.api.server.storage.ResourcePersistentId;
|
||||||
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
|
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
|
||||||
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
|
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
|
||||||
|
|
|
@ -3,7 +3,6 @@ package ca.uhn.fhir.jpa.dao.r4;
|
||||||
import ca.uhn.fhir.context.FhirContext;
|
import ca.uhn.fhir.context.FhirContext;
|
||||||
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
||||||
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.jpa.dao.ObservationLastNIndexPersistSvc;
|
import ca.uhn.fhir.jpa.dao.ObservationLastNIndexPersistSvc;
|
||||||
import ca.uhn.fhir.jpa.model.entity.ResourceTable;
|
import ca.uhn.fhir.jpa.model.entity.ResourceTable;
|
||||||
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchSvcImpl;
|
import ca.uhn.fhir.jpa.search.lastn.ElasticsearchSvcImpl;
|
||||||
|
@ -11,6 +10,7 @@ import ca.uhn.fhir.jpa.search.lastn.json.CodeJson;
|
||||||
import ca.uhn.fhir.jpa.search.lastn.json.ObservationJson;
|
import ca.uhn.fhir.jpa.search.lastn.json.ObservationJson;
|
||||||
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
||||||
import ca.uhn.fhir.parser.IParser;
|
import ca.uhn.fhir.parser.IParser;
|
||||||
import ca.uhn.fhir.rest.param.ReferenceAndListParam;
|
import ca.uhn.fhir.rest.param.ReferenceAndListParam;
|
||||||
import ca.uhn.fhir.rest.param.ReferenceOrListParam;
|
import ca.uhn.fhir.rest.param.ReferenceOrListParam;
|
||||||
|
|
|
@ -3,12 +3,12 @@ package ca.uhn.fhir.jpa.dao.r4;
|
||||||
import ca.uhn.fhir.context.FhirContext;
|
import ca.uhn.fhir.context.FhirContext;
|
||||||
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
import ca.uhn.fhir.jpa.api.config.DaoConfig;
|
||||||
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.jpa.model.entity.ResourceEncodingEnum;
|
import ca.uhn.fhir.jpa.model.entity.ResourceEncodingEnum;
|
||||||
import ca.uhn.fhir.jpa.partition.SystemRequestDetails;
|
import ca.uhn.fhir.jpa.partition.SystemRequestDetails;
|
||||||
import ca.uhn.fhir.jpa.search.reindex.BlockPolicy;
|
import ca.uhn.fhir.jpa.search.reindex.BlockPolicy;
|
||||||
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
||||||
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
||||||
import ca.uhn.fhir.util.StopWatch;
|
import ca.uhn.fhir.util.StopWatch;
|
||||||
import org.apache.commons.lang3.Validate;
|
import org.apache.commons.lang3.Validate;
|
||||||
|
|
|
@ -2,7 +2,6 @@ package ca.uhn.fhir.jpa.subscription.module.matcher;
|
||||||
|
|
||||||
import ca.uhn.fhir.context.FhirContext;
|
import ca.uhn.fhir.context.FhirContext;
|
||||||
import ca.uhn.fhir.i18n.Msg;
|
import ca.uhn.fhir.i18n.Msg;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.jpa.model.entity.ModelConfig;
|
import ca.uhn.fhir.jpa.model.entity.ModelConfig;
|
||||||
import ca.uhn.fhir.jpa.model.entity.NormalizedQuantitySearchLevel;
|
import ca.uhn.fhir.jpa.model.entity.NormalizedQuantitySearchLevel;
|
||||||
import ca.uhn.fhir.jpa.model.entity.ResourceIndexedSearchParamString;
|
import ca.uhn.fhir.jpa.model.entity.ResourceIndexedSearchParamString;
|
||||||
|
@ -17,6 +16,7 @@ import ca.uhn.fhir.jpa.subscription.match.matcher.matching.SubscriptionStrategyE
|
||||||
import ca.uhn.fhir.jpa.subscription.model.CanonicalSubscription;
|
import ca.uhn.fhir.jpa.subscription.model.CanonicalSubscription;
|
||||||
import ca.uhn.fhir.jpa.subscription.model.ResourceModifiedMessage;
|
import ca.uhn.fhir.jpa.subscription.model.ResourceModifiedMessage;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
||||||
import ca.uhn.fhir.jpa.util.CoordCalculatorTest;
|
import ca.uhn.fhir.jpa.util.CoordCalculatorTest;
|
||||||
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
|
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
|
||||||
import ca.uhn.fhir.rest.param.CompositeParam;
|
import ca.uhn.fhir.rest.param.CompositeParam;
|
||||||
|
|
|
@ -8,7 +8,6 @@ import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoValueSet;
|
||||||
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
||||||
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
|
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
|
||||||
import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportJobSchedulingHelper;
|
import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportJobSchedulingHelper;
|
||||||
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
|
||||||
import ca.uhn.fhir.jpa.dao.data.IResourceTableDao;
|
import ca.uhn.fhir.jpa.dao.data.IResourceTableDao;
|
||||||
import ca.uhn.fhir.jpa.dao.data.ITermCodeSystemDao;
|
import ca.uhn.fhir.jpa.dao.data.ITermCodeSystemDao;
|
||||||
import ca.uhn.fhir.jpa.dao.data.ITermCodeSystemVersionDao;
|
import ca.uhn.fhir.jpa.dao.data.ITermCodeSystemVersionDao;
|
||||||
|
@ -21,8 +20,7 @@ import ca.uhn.fhir.jpa.term.api.ITermCodeSystemStorageSvc;
|
||||||
import ca.uhn.fhir.jpa.term.api.ITermDeferredStorageSvc;
|
import ca.uhn.fhir.jpa.term.api.ITermDeferredStorageSvc;
|
||||||
import ca.uhn.fhir.jpa.term.api.ITermReadSvcR4;
|
import ca.uhn.fhir.jpa.term.api.ITermReadSvcR4;
|
||||||
import ca.uhn.fhir.jpa.term.custom.CustomTerminologySet;
|
import ca.uhn.fhir.jpa.term.custom.CustomTerminologySet;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.parser.StrictErrorHandler;
|
import ca.uhn.fhir.parser.StrictErrorHandler;
|
||||||
import ca.uhn.fhir.rest.api.server.storage.ResourcePersistentId;
|
import ca.uhn.fhir.rest.api.server.storage.ResourcePersistentId;
|
||||||
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
||||||
|
@ -46,15 +44,12 @@ import org.junit.jupiter.api.AfterEach;
|
||||||
import org.junit.jupiter.api.BeforeEach;
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
import org.junit.jupiter.api.Nested;
|
import org.junit.jupiter.api.Nested;
|
||||||
import org.junit.jupiter.api.Test;
|
import org.junit.jupiter.api.Test;
|
||||||
import org.junit.jupiter.api.extension.ExtendWith;
|
|
||||||
import org.mockito.Answers;
|
import org.mockito.Answers;
|
||||||
import org.mockito.Mock;
|
import org.mockito.Mock;
|
||||||
import org.slf4j.Logger;
|
import org.slf4j.Logger;
|
||||||
import org.slf4j.LoggerFactory;
|
import org.slf4j.LoggerFactory;
|
||||||
import org.springframework.beans.factory.annotation.Autowired;
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
import org.springframework.beans.factory.annotation.Qualifier;
|
import org.springframework.beans.factory.annotation.Qualifier;
|
||||||
import org.springframework.test.context.ContextConfiguration;
|
|
||||||
import org.springframework.test.context.junit.jupiter.SpringExtension;
|
|
||||||
import org.springframework.test.util.AopTestUtils;
|
import org.springframework.test.util.AopTestUtils;
|
||||||
import org.springframework.test.util.ReflectionTestUtils;
|
import org.springframework.test.util.ReflectionTestUtils;
|
||||||
import org.springframework.transaction.PlatformTransactionManager;
|
import org.springframework.transaction.PlatformTransactionManager;
|
||||||
|
|
|
@ -8,9 +8,6 @@ import ca.uhn.fhir.jpa.api.dao.IFhirResourceDaoValueSet;
|
||||||
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
import ca.uhn.fhir.jpa.api.dao.IFhirSystemDao;
|
||||||
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
|
import ca.uhn.fhir.jpa.api.svc.ISearchCoordinatorSvc;
|
||||||
import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportJobSchedulingHelper;
|
import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportJobSchedulingHelper;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
|
||||||
import ca.uhn.fhir.jpa.dao.data.IResourceTableDao;
|
import ca.uhn.fhir.jpa.dao.data.IResourceTableDao;
|
||||||
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
|
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
|
||||||
import ca.uhn.fhir.jpa.entity.TermConcept;
|
import ca.uhn.fhir.jpa.entity.TermConcept;
|
||||||
|
@ -21,6 +18,9 @@ import ca.uhn.fhir.jpa.term.api.ITermCodeSystemStorageSvc;
|
||||||
import ca.uhn.fhir.jpa.term.api.ITermDeferredStorageSvc;
|
import ca.uhn.fhir.jpa.term.api.ITermDeferredStorageSvc;
|
||||||
import ca.uhn.fhir.jpa.term.api.ITermReadSvcR4;
|
import ca.uhn.fhir.jpa.term.api.ITermReadSvcR4;
|
||||||
import ca.uhn.fhir.jpa.term.custom.CustomTerminologySet;
|
import ca.uhn.fhir.jpa.term.custom.CustomTerminologySet;
|
||||||
|
import ca.uhn.fhir.jpa.test.BaseJpaTest;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
||||||
import ca.uhn.fhir.rest.api.server.storage.ResourcePersistentId;
|
import ca.uhn.fhir.rest.api.server.storage.ResourcePersistentId;
|
||||||
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
||||||
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
|
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
|
||||||
|
|
|
@ -1,6 +1,5 @@
|
||||||
package ca.uhn.fhir.jpa.term.hsearch;
|
package ca.uhn.fhir.jpa.term.hsearch;
|
||||||
|
|
||||||
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
|
||||||
import ca.uhn.fhir.jpa.dao.data.ITermConceptDao;
|
import ca.uhn.fhir.jpa.dao.data.ITermConceptDao;
|
||||||
import ca.uhn.fhir.jpa.entity.TermCodeSystem;
|
import ca.uhn.fhir.jpa.entity.TermCodeSystem;
|
||||||
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
|
import ca.uhn.fhir.jpa.entity.TermCodeSystemVersion;
|
||||||
|
@ -13,6 +12,7 @@ import ca.uhn.fhir.jpa.term.api.ITermLoaderSvc;
|
||||||
import ca.uhn.fhir.jpa.term.api.ITermReadSvc;
|
import ca.uhn.fhir.jpa.term.api.ITermReadSvc;
|
||||||
import ca.uhn.fhir.jpa.test.BaseJpaR4Test;
|
import ca.uhn.fhir.jpa.test.BaseJpaR4Test;
|
||||||
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
import ca.uhn.fhir.jpa.test.config.TestHSearchAddInConfig;
|
||||||
|
import ca.uhn.fhir.jpa.test.config.TestR4Config;
|
||||||
import net.ttddyy.dsproxy.ExecutionInfo;
|
import net.ttddyy.dsproxy.ExecutionInfo;
|
||||||
import net.ttddyy.dsproxy.QueryInfo;
|
import net.ttddyy.dsproxy.QueryInfo;
|
||||||
import net.ttddyy.dsproxy.support.ProxyDataSourceBuilder;
|
import net.ttddyy.dsproxy.support.ProxyDataSourceBuilder;
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../pom.xml</relativePath>
|
<relativePath>../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -7,7 +7,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>
|
<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
<artifactId>hapi-fhir-spring-boot-sample-client-okhttp</artifactId>
|
<artifactId>hapi-fhir-spring-boot-sample-client-okhttp</artifactId>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
<artifactId>hapi-fhir-spring-boot-sample-server-jersey</artifactId>
|
<artifactId>hapi-fhir-spring-boot-sample-server-jersey</artifactId>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-spring-boot</artifactId>
|
<artifactId>hapi-fhir-spring-boot</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../pom.xml</relativePath>
|
<relativePath>../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
<modelVersion>4.0.0</modelVersion>
|
<modelVersion>4.0.0</modelVersion>
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.jobs.reindex;
|
package ca.uhn.fhir.batch2.jobs.reindex;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* hapi-fhir-storage-batch2-jobs
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.jobs.step.IIdChunkProducer;
|
import ca.uhn.fhir.batch2.jobs.step.IIdChunkProducer;
|
||||||
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
||||||
import ca.uhn.fhir.jpa.api.pid.IResourcePidList;
|
import ca.uhn.fhir.jpa.api.pid.IResourcePidList;
|
||||||
|
|
|
@ -6,7 +6,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.api;
|
package ca.uhn.fhir.batch2.api;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
|
|
||||||
public class ChunkExecutionDetails<PT extends IModelJson, IT extends IModelJson> {
|
public class ChunkExecutionDetails<PT extends IModelJson, IT extends IModelJson> {
|
||||||
|
|
|
@ -25,6 +25,7 @@ import ca.uhn.fhir.batch2.model.JobInstanceStartRequest;
|
||||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||||
|
|
||||||
|
import javax.annotation.Nullable;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
public interface IJobCoordinator {
|
public interface IJobCoordinator {
|
||||||
|
@ -52,11 +53,14 @@ public interface IJobCoordinator {
|
||||||
*/
|
*/
|
||||||
List<JobInstance> getInstances(int thePageSize, int thePageIndex);
|
List<JobInstance> getInstances(int thePageSize, int thePageIndex);
|
||||||
|
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Fetch job instances
|
* Fetch recent job instances
|
||||||
*/
|
*/
|
||||||
List<JobInstance> getRecentInstances(int theCount, int theStart);
|
List<JobInstance> getRecentInstances(int theCount, int theStart);
|
||||||
|
|
||||||
void cancelInstance(String theInstanceId) throws ResourceNotFoundException;
|
JobOperationResultJson cancelInstance(String theInstanceId) throws ResourceNotFoundException;
|
||||||
|
|
||||||
|
List<JobInstance> getInstancesbyJobDefinitionIdAndEndedStatus(String theJobDefinitionId, @Nullable Boolean theEnded, int theCount, int theStart);
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
@ -28,6 +28,7 @@ import ca.uhn.fhir.batch2.model.WorkChunk;
|
||||||
import java.util.Iterator;
|
import java.util.Iterator;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
import java.util.Optional;
|
import java.util.Optional;
|
||||||
|
import java.util.Set;
|
||||||
|
|
||||||
public interface IJobPersistence {
|
public interface IJobPersistence {
|
||||||
|
|
||||||
|
@ -83,6 +84,17 @@ public interface IJobPersistence {
|
||||||
*/
|
*/
|
||||||
Optional<JobInstance> fetchInstanceAndMarkInProgress(String theInstanceId);
|
Optional<JobInstance> fetchInstanceAndMarkInProgress(String theInstanceId);
|
||||||
|
|
||||||
|
List<JobInstance> fetchInstancesByJobDefinitionIdAndStatus(String theJobDefinitionId, Set<StatusEnum> theRequestedStatuses, int thePageSize, int thePageIndex);
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Fetch all job instances for a given job definition id
|
||||||
|
* @param theJobDefinitionId
|
||||||
|
* @param theCount
|
||||||
|
* @param theStart
|
||||||
|
* @return
|
||||||
|
*/
|
||||||
|
List<JobInstance> fetchInstancesByJobDefinitionId(String theJobDefinitionId, int theCount, int theStart);
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Marks a given chunk as having errored (i.e. may be recoverable)
|
* Marks a given chunk as having errored (i.e. may be recoverable)
|
||||||
*
|
*
|
||||||
|
@ -172,6 +184,5 @@ public interface IJobPersistence {
|
||||||
*
|
*
|
||||||
* @param theInstanceId The instance ID
|
* @param theInstanceId The instance ID
|
||||||
*/
|
*/
|
||||||
void cancelInstance(String theInstanceId);
|
JobOperationResultJson cancelInstance(String theInstanceId);
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
@ -0,0 +1,53 @@
|
||||||
|
package ca.uhn.fhir.batch2.api;
|
||||||
|
|
||||||
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
|
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
|
|
||||||
|
public class JobOperationResultJson implements IModelJson {
|
||||||
|
@JsonProperty("operation")
|
||||||
|
private String myOperation;
|
||||||
|
@JsonProperty("success")
|
||||||
|
private Boolean mySuccess;
|
||||||
|
@JsonProperty("message")
|
||||||
|
private String myMessage;
|
||||||
|
|
||||||
|
public static JobOperationResultJson newSuccess(String theOperation, String theMessage) {
|
||||||
|
JobOperationResultJson result = new JobOperationResultJson();
|
||||||
|
result.setSuccess(true);
|
||||||
|
result.setOperation(theOperation);
|
||||||
|
result.setMessage(theMessage);
|
||||||
|
return result;
|
||||||
|
}
|
||||||
|
|
||||||
|
public static JobOperationResultJson newFailure(String theOperation, String theMessage) {
|
||||||
|
JobOperationResultJson result = new JobOperationResultJson();
|
||||||
|
result.setSuccess(false);
|
||||||
|
result.setOperation(theOperation);
|
||||||
|
result.setMessage(theMessage);
|
||||||
|
return result;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getOperation() {
|
||||||
|
return myOperation;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void setOperation(String theOperation) {
|
||||||
|
myOperation = theOperation;
|
||||||
|
}
|
||||||
|
|
||||||
|
public Boolean getSuccess() {
|
||||||
|
return mySuccess;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void setSuccess(Boolean theSuccess) {
|
||||||
|
mySuccess = theSuccess;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getMessage() {
|
||||||
|
return myMessage;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void setMessage(String theMessage) {
|
||||||
|
myMessage = theMessage;
|
||||||
|
}
|
||||||
|
}
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.config;
|
package ca.uhn.fhir.batch2.config;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import org.hl7.fhir.r4.model.InstantType;
|
import org.hl7.fhir.r4.model.InstantType;
|
||||||
|
|
||||||
import java.util.Date;
|
import java.util.Date;
|
||||||
|
|
|
@ -22,6 +22,7 @@ package ca.uhn.fhir.batch2.coordinator;
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.api.IJobCoordinator;
|
import ca.uhn.fhir.batch2.api.IJobCoordinator;
|
||||||
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
||||||
|
import ca.uhn.fhir.batch2.api.JobOperationResultJson;
|
||||||
import ca.uhn.fhir.batch2.channel.BatchJobSender;
|
import ca.uhn.fhir.batch2.channel.BatchJobSender;
|
||||||
import ca.uhn.fhir.batch2.model.JobDefinition;
|
import ca.uhn.fhir.batch2.model.JobDefinition;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
|
@ -36,6 +37,7 @@ import org.apache.commons.lang3.Validate;
|
||||||
import org.springframework.messaging.MessageHandler;
|
import org.springframework.messaging.MessageHandler;
|
||||||
|
|
||||||
import javax.annotation.Nonnull;
|
import javax.annotation.Nonnull;
|
||||||
|
import javax.annotation.Nullable;
|
||||||
import javax.annotation.PostConstruct;
|
import javax.annotation.PostConstruct;
|
||||||
import javax.annotation.PreDestroy;
|
import javax.annotation.PreDestroy;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
@ -114,8 +116,13 @@ public class JobCoordinatorImpl implements IJobCoordinator {
|
||||||
}
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public void cancelInstance(String theInstanceId) throws ResourceNotFoundException {
|
public List<JobInstance> getInstancesbyJobDefinitionIdAndEndedStatus(String theJobDefinitionId, @Nullable Boolean theEnded, int theCount, int theStart) {
|
||||||
myJobPersistence.cancelInstance(theInstanceId);
|
return myJobQuerySvc.getInstancesByJobDefinitionIdAndEndedStatus(theJobDefinitionId, theEnded, theCount, theStart);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public JobOperationResultJson cancelInstance(String theInstanceId) throws ResourceNotFoundException {
|
||||||
|
return myJobPersistence.cancelInstance(theInstanceId);
|
||||||
}
|
}
|
||||||
|
|
||||||
@PostConstruct
|
@PostConstruct
|
||||||
|
|
|
@ -34,10 +34,12 @@ import org.slf4j.LoggerFactory;
|
||||||
import javax.annotation.Nonnull;
|
import javax.annotation.Nonnull;
|
||||||
import java.util.HashMap;
|
import java.util.HashMap;
|
||||||
import java.util.HashSet;
|
import java.util.HashSet;
|
||||||
|
import java.util.List;
|
||||||
import java.util.Map;
|
import java.util.Map;
|
||||||
import java.util.Optional;
|
import java.util.Optional;
|
||||||
import java.util.Set;
|
import java.util.Set;
|
||||||
import java.util.TreeMap;
|
import java.util.TreeMap;
|
||||||
|
import java.util.stream.Collectors;
|
||||||
|
|
||||||
public class JobDefinitionRegistry {
|
public class JobDefinitionRegistry {
|
||||||
private static final Logger ourLog = LoggerFactory.getLogger(JobDefinitionRegistry.class);
|
private static final Logger ourLog = LoggerFactory.getLogger(JobDefinitionRegistry.class);
|
||||||
|
@ -114,4 +116,18 @@ public class JobDefinitionRegistry {
|
||||||
JobDefinition<?> jobDefinition = getJobDefinitionOrThrowException(theInstance.getJobDefinitionId(), theInstance.getJobDefinitionVersion());
|
JobDefinition<?> jobDefinition = getJobDefinitionOrThrowException(theInstance.getJobDefinitionId(), theInstance.getJobDefinitionVersion());
|
||||||
theInstance.setJobDefinition(jobDefinition);
|
theInstance.setJobDefinition(jobDefinition);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* @return a list of Job Definition Ids in alphabetical order
|
||||||
|
*/
|
||||||
|
public List<String> getJobDefinitionIds() {
|
||||||
|
return myJobs.keySet()
|
||||||
|
.stream()
|
||||||
|
.sorted()
|
||||||
|
.collect(Collectors.toList());
|
||||||
|
}
|
||||||
|
|
||||||
|
public boolean isEmpty() {
|
||||||
|
return myJobs.isEmpty();
|
||||||
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -23,6 +23,7 @@ package ca.uhn.fhir.batch2.coordinator;
|
||||||
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
||||||
import ca.uhn.fhir.batch2.model.JobDefinition;
|
import ca.uhn.fhir.batch2.model.JobDefinition;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
import ca.uhn.fhir.i18n.Msg;
|
import ca.uhn.fhir.i18n.Msg;
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
import ca.uhn.fhir.model.api.annotation.PasswordField;
|
import ca.uhn.fhir.model.api.annotation.PasswordField;
|
||||||
|
@ -33,8 +34,10 @@ import ca.uhn.fhir.util.UrlUtil;
|
||||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
|
|
||||||
import javax.annotation.Nonnull;
|
import javax.annotation.Nonnull;
|
||||||
|
import javax.annotation.Nullable;
|
||||||
import java.lang.reflect.Field;
|
import java.lang.reflect.Field;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
import java.util.Set;
|
||||||
import java.util.stream.Collectors;
|
import java.util.stream.Collectors;
|
||||||
|
|
||||||
/**
|
/**
|
||||||
|
@ -62,8 +65,12 @@ class JobQuerySvc {
|
||||||
}
|
}
|
||||||
|
|
||||||
public List<JobInstance> fetchRecentInstances(int theCount, int theStart) {
|
public List<JobInstance> fetchRecentInstances(int theCount, int theStart) {
|
||||||
return myJobPersistence.fetchRecentInstances(theCount, theStart)
|
return massageInstancesForUserAccess(myJobPersistence.fetchRecentInstances(theCount, theStart));
|
||||||
.stream().map(this::massageInstanceForUserAccess)
|
}
|
||||||
|
|
||||||
|
private List<JobInstance> massageInstancesForUserAccess(List<JobInstance> theFetchRecentInstances) {
|
||||||
|
return theFetchRecentInstances.stream()
|
||||||
|
.map(this::massageInstanceForUserAccess)
|
||||||
.collect(Collectors.toList());
|
.collect(Collectors.toList());
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@ -107,4 +114,19 @@ class JobQuerySvc {
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public List<JobInstance> getInstancesByJobDefinitionIdAndEndedStatus(String theJobDefinitionId, @Nullable Boolean theEnded, int theCount, int theStart) {
|
||||||
|
if (theEnded == null) {
|
||||||
|
return myJobPersistence.fetchInstancesByJobDefinitionId(theJobDefinitionId, theCount, theStart);
|
||||||
|
}
|
||||||
|
|
||||||
|
Set<StatusEnum> requestedStatus;
|
||||||
|
if (theEnded) {
|
||||||
|
requestedStatus = StatusEnum.getEndedStatuses();
|
||||||
|
} else {
|
||||||
|
requestedStatus = StatusEnum.getNotEndedStatuses();
|
||||||
|
}
|
||||||
|
return myJobPersistence.fetchInstancesByJobDefinitionIdAndStatus(theJobDefinitionId, requestedStatus, theCount, theStart);
|
||||||
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.coordinator;
|
package ca.uhn.fhir.batch2.coordinator;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
|
|
||||||
public class JobStepExecutorOutput<PT extends IModelJson, IT extends IModelJson, OT extends IModelJson> {
|
public class JobStepExecutorOutput<PT extends IModelJson, IT extends IModelJson, OT extends IModelJson> {
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.coordinator;
|
package ca.uhn.fhir.batch2.coordinator;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
||||||
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
|
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
|
||||||
import ca.uhn.fhir.batch2.model.JobDefinition;
|
import ca.uhn.fhir.batch2.model.JobDefinition;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.coordinator;
|
package ca.uhn.fhir.batch2.coordinator;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.api.ChunkExecutionDetails;
|
import ca.uhn.fhir.batch2.api.ChunkExecutionDetails;
|
||||||
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
||||||
import ca.uhn.fhir.batch2.api.IJobStepWorker;
|
import ca.uhn.fhir.batch2.api.IJobStepWorker;
|
||||||
|
@ -26,7 +46,6 @@ import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
import javax.annotation.Nullable;
|
import javax.annotation.Nullable;
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
import java.util.HashSet;
|
|
||||||
import java.util.Iterator;
|
import java.util.Iterator;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
|
|
|
@ -21,6 +21,7 @@ package ca.uhn.fhir.batch2.coordinator;
|
||||||
*/
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
||||||
|
import ca.uhn.fhir.batch2.api.JobOperationResultJson;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
import ca.uhn.fhir.batch2.model.StatusEnum;
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
import ca.uhn.fhir.batch2.model.WorkChunk;
|
import ca.uhn.fhir.batch2.model.WorkChunk;
|
||||||
|
@ -28,6 +29,7 @@ import ca.uhn.fhir.batch2.model.WorkChunk;
|
||||||
import java.util.Iterator;
|
import java.util.Iterator;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
import java.util.Optional;
|
import java.util.Optional;
|
||||||
|
import java.util.Set;
|
||||||
|
|
||||||
public class SynchronizedJobPersistenceWrapper implements IJobPersistence {
|
public class SynchronizedJobPersistenceWrapper implements IJobPersistence {
|
||||||
|
|
||||||
|
@ -75,6 +77,16 @@ public class SynchronizedJobPersistenceWrapper implements IJobPersistence {
|
||||||
return myWrap.fetchInstanceAndMarkInProgress(theInstanceId);
|
return myWrap.fetchInstanceAndMarkInProgress(theInstanceId);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public List<JobInstance> fetchInstancesByJobDefinitionIdAndStatus(String theJobDefinitionId, Set<StatusEnum> theRequestedStatuses, int thePageSize, int thePageIndex) {
|
||||||
|
return myWrap.fetchInstancesByJobDefinitionIdAndStatus(theJobDefinitionId, theRequestedStatuses, thePageSize, thePageIndex);
|
||||||
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public List<JobInstance> fetchInstancesByJobDefinitionId(String theJobDefinitionId, int theCount, int theStart) {
|
||||||
|
return myWrap.fetchInstancesByJobDefinitionId(theJobDefinitionId, theCount, theStart);
|
||||||
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public synchronized void markWorkChunkAsErroredAndIncrementErrorCount(String theChunkId, String theErrorMessage) {
|
public synchronized void markWorkChunkAsErroredAndIncrementErrorCount(String theChunkId, String theErrorMessage) {
|
||||||
myWrap.markWorkChunkAsErroredAndIncrementErrorCount(theChunkId, theErrorMessage);
|
myWrap.markWorkChunkAsErroredAndIncrementErrorCount(theChunkId, theErrorMessage);
|
||||||
|
@ -132,7 +144,7 @@ public class SynchronizedJobPersistenceWrapper implements IJobPersistence {
|
||||||
}
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public void cancelInstance(String theInstanceId) {
|
public JobOperationResultJson cancelInstance(String theInstanceId) {
|
||||||
myWrap.cancelInstance(theInstanceId);
|
return myWrap.cancelInstance(theInstanceId);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.jobs.chunk;
|
package ca.uhn.fhir.batch2.jobs.chunk;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.jpa.util.JsonDateDeserializer;
|
import ca.uhn.fhir.jpa.util.JsonDateDeserializer;
|
||||||
import ca.uhn.fhir.jpa.util.JsonDateSerializer;
|
import ca.uhn.fhir.jpa.util.JsonDateSerializer;
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
|
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhir.batch2.jobs.chunk;
|
||||||
|
|
||||||
/*-
|
/*-
|
||||||
* #%L
|
* #%L
|
||||||
* hapi-fhir-storage-batch2-jobs
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
* %%
|
* %%
|
||||||
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
* %%
|
* %%
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.jobs.chunk;
|
package ca.uhn.fhir.batch2.jobs.chunk;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.jpa.api.pid.TypedResourcePid;
|
import ca.uhn.fhir.jpa.api.pid.TypedResourcePid;
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.jobs.parameters;
|
package ca.uhn.fhir.batch2.jobs.parameters;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.jobs.step;
|
package ca.uhn.fhir.batch2.jobs.step;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.jobs.chunk.ChunkRangeJson;
|
import ca.uhn.fhir.batch2.jobs.chunk.ChunkRangeJson;
|
||||||
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
||||||
import ca.uhn.fhir.jpa.api.pid.IResourcePidList;
|
import ca.uhn.fhir.jpa.api.pid.IResourcePidList;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.jobs.step;
|
package ca.uhn.fhir.batch2.jobs.step;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.api.IJobDataSink;
|
import ca.uhn.fhir.batch2.api.IJobDataSink;
|
||||||
import ca.uhn.fhir.batch2.api.IJobStepWorker;
|
import ca.uhn.fhir.batch2.api.IJobStepWorker;
|
||||||
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
|
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.model;
|
package ca.uhn.fhir.batch2.model;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
public class ChunkOutcome {
|
public class ChunkOutcome {
|
||||||
public enum Status {
|
public enum Status {
|
||||||
SUCCESS,
|
SUCCESS,
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.model;
|
package ca.uhn.fhir.batch2.model;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.api.IJobStepWorker;
|
import ca.uhn.fhir.batch2.api.IJobStepWorker;
|
||||||
import ca.uhn.fhir.batch2.api.IReductionStepWorker;
|
import ca.uhn.fhir.batch2.api.IReductionStepWorker;
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.batch2.model;
|
package ca.uhn.fhir.batch2.model;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* HAPI FHIR JPA Server - Batch2 Task Processor
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
|
|
||||||
|
|
|
@ -20,6 +20,7 @@ package ca.uhn.fhir.batch2.model;
|
||||||
* #L%
|
* #L%
|
||||||
*/
|
*/
|
||||||
|
|
||||||
|
import javax.annotation.Nonnull;
|
||||||
import java.util.Collections;
|
import java.util.Collections;
|
||||||
import java.util.EnumSet;
|
import java.util.EnumSet;
|
||||||
import java.util.Set;
|
import java.util.Set;
|
||||||
|
@ -29,40 +30,44 @@ public enum StatusEnum {
|
||||||
/**
|
/**
|
||||||
* Task is waiting to execute and should begin with no intervention required.
|
* Task is waiting to execute and should begin with no intervention required.
|
||||||
*/
|
*/
|
||||||
QUEUED(true),
|
QUEUED(true, false),
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Task is current executing
|
* Task is current executing
|
||||||
*/
|
*/
|
||||||
IN_PROGRESS(true),
|
IN_PROGRESS(true, false),
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Task completed successfully
|
* Task completed successfully
|
||||||
*/
|
*/
|
||||||
COMPLETED(false),
|
COMPLETED(false, true),
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Task execution resulted in an error but the error may be transient (or transient status is unknown).
|
* Task execution resulted in an error but the error may be transient (or transient status is unknown).
|
||||||
* Retrying may result in success.
|
* Retrying may result in success.
|
||||||
*/
|
*/
|
||||||
ERRORED(true),
|
ERRORED(true, true),
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Task has failed and is known to be unrecoverable. There is no reason to believe that retrying will
|
* Task has failed and is known to be unrecoverable. There is no reason to believe that retrying will
|
||||||
* result in a different outcome.
|
* result in a different outcome.
|
||||||
*/
|
*/
|
||||||
FAILED(true),
|
FAILED(true, true),
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Task has been cancelled.
|
* Task has been cancelled.
|
||||||
*/
|
*/
|
||||||
CANCELLED(true);
|
CANCELLED(true, true);
|
||||||
|
|
||||||
private final boolean myIncomplete;
|
private final boolean myIncomplete;
|
||||||
|
private final boolean myEnded;
|
||||||
private static Set<StatusEnum> ourIncompleteStatuses;
|
private static Set<StatusEnum> ourIncompleteStatuses;
|
||||||
|
private static Set<StatusEnum> ourEndedStatuses;
|
||||||
|
private static Set<StatusEnum> ourNotEndedStatuses;
|
||||||
|
|
||||||
StatusEnum(boolean theIncomplete) {
|
StatusEnum(boolean theIncomplete, boolean theEnded) {
|
||||||
myIncomplete = theIncomplete;
|
myIncomplete = theIncomplete;
|
||||||
|
myEnded = theEnded;
|
||||||
}
|
}
|
||||||
|
|
||||||
/**
|
/**
|
||||||
|
@ -72,16 +77,58 @@ public enum StatusEnum {
|
||||||
public static Set<StatusEnum> getIncompleteStatuses() {
|
public static Set<StatusEnum> getIncompleteStatuses() {
|
||||||
Set<StatusEnum> retVal = ourIncompleteStatuses;
|
Set<StatusEnum> retVal = ourIncompleteStatuses;
|
||||||
if (retVal == null) {
|
if (retVal == null) {
|
||||||
EnumSet<StatusEnum> set = EnumSet.noneOf(StatusEnum.class);
|
EnumSet<StatusEnum> incompleteSet = EnumSet.noneOf(StatusEnum.class);
|
||||||
for (StatusEnum next : values()) {
|
for (StatusEnum next : values()) {
|
||||||
if (next.myIncomplete) {
|
if (next.myIncomplete) {
|
||||||
set.add(next);
|
incompleteSet.add(next);
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
ourIncompleteStatuses = Collections.unmodifiableSet(set);
|
ourIncompleteStatuses = Collections.unmodifiableSet(incompleteSet);
|
||||||
retVal = ourIncompleteStatuses;
|
retVal = ourIncompleteStatuses;
|
||||||
}
|
}
|
||||||
return retVal;
|
return retVal;
|
||||||
}
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Statuses that represent a job that has ended. I.e.
|
||||||
|
* all statuses except {@link #QUEUED and #COMPLETED}
|
||||||
|
*/
|
||||||
|
@Nonnull
|
||||||
|
public static Set<StatusEnum> getEndedStatuses() {
|
||||||
|
Set<StatusEnum> retVal = ourEndedStatuses;
|
||||||
|
if (retVal == null) {
|
||||||
|
initializeStaticEndedStatuses();
|
||||||
|
}
|
||||||
|
retVal = ourEndedStatuses;
|
||||||
|
return retVal;
|
||||||
|
}
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Statuses that represent a job that has not ended. I.e.
|
||||||
|
* {@link #QUEUED and #COMPLETED}
|
||||||
|
*/
|
||||||
|
@Nonnull
|
||||||
|
public static Set<StatusEnum> getNotEndedStatuses() {
|
||||||
|
Set<StatusEnum> retVal = ourNotEndedStatuses;
|
||||||
|
if (retVal == null) {
|
||||||
|
initializeStaticEndedStatuses();
|
||||||
|
}
|
||||||
|
retVal = ourNotEndedStatuses;
|
||||||
|
return retVal;
|
||||||
|
}
|
||||||
|
@Nonnull
|
||||||
|
private static void initializeStaticEndedStatuses() {
|
||||||
|
EnumSet<StatusEnum> endedSet = EnumSet.noneOf(StatusEnum.class);
|
||||||
|
EnumSet<StatusEnum> notEndedSet = EnumSet.noneOf(StatusEnum.class);
|
||||||
|
for (StatusEnum next : values()) {
|
||||||
|
if (next.myEnded) {
|
||||||
|
endedSet.add(next);
|
||||||
|
} else {
|
||||||
|
notEndedSet.add(next);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
ourEndedStatuses = Collections.unmodifiableSet(endedSet);
|
||||||
|
ourNotEndedStatuses = Collections.unmodifiableSet(notEndedSet);
|
||||||
|
}
|
||||||
|
|
||||||
}
|
}
|
||||||
|
|
|
@ -0,0 +1,17 @@
|
||||||
|
package ca.uhn.fhir.batch2.model;
|
||||||
|
|
||||||
|
import org.junit.jupiter.api.Test;
|
||||||
|
|
||||||
|
import static org.hamcrest.MatcherAssert.assertThat;
|
||||||
|
import static org.hamcrest.Matchers.containsInAnyOrder;
|
||||||
|
|
||||||
|
class StatusEnumTest {
|
||||||
|
@Test
|
||||||
|
public void testEndedStatuses() {
|
||||||
|
assertThat(StatusEnum.getEndedStatuses(), containsInAnyOrder(StatusEnum.COMPLETED, StatusEnum.FAILED, StatusEnum.CANCELLED, StatusEnum.ERRORED));
|
||||||
|
}
|
||||||
|
@Test
|
||||||
|
public void testNotEndedStatuses() {
|
||||||
|
assertThat(StatusEnum.getNotEndedStatuses(), containsInAnyOrder(StatusEnum.QUEUED, StatusEnum.IN_PROGRESS));
|
||||||
|
}
|
||||||
|
}
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE5-SNAPSHOT</version>
|
<version>6.1.0-PRE6-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
<modelVersion>4.0.0</modelVersion>
|
<modelVersion>4.0.0</modelVersion>
|
||||||
|
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhir.mdm.batch2;
|
||||||
|
|
||||||
/*-
|
/*-
|
||||||
* #%L
|
* #%L
|
||||||
* hapi-fhir-storage-batch2-jobs
|
* hapi-fhir-storage-mdm
|
||||||
* %%
|
* %%
|
||||||
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
* %%
|
* %%
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.mdm.batch2;
|
package ca.uhn.fhir.mdm.batch2;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* hapi-fhir-storage-mdm
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.coordinator.JobDefinitionRegistry;
|
import ca.uhn.fhir.batch2.coordinator.JobDefinitionRegistry;
|
||||||
import ca.uhn.fhir.batch2.model.JobDefinition;
|
import ca.uhn.fhir.batch2.model.JobDefinition;
|
||||||
import ca.uhn.fhir.mdm.batch2.clear.MdmClearAppCtx;
|
import ca.uhn.fhir.mdm.batch2.clear.MdmClearAppCtx;
|
||||||
|
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhir.mdm.batch2;
|
||||||
|
|
||||||
/*-
|
/*-
|
||||||
* #%L
|
* #%L
|
||||||
* hapi-fhir-storage-batch2-jobs
|
* hapi-fhir-storage-mdm
|
||||||
* %%
|
* %%
|
||||||
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
* %%
|
* %%
|
||||||
|
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhir.mdm.batch2;
|
||||||
|
|
||||||
/*-
|
/*-
|
||||||
* #%L
|
* #%L
|
||||||
* hapi-fhir-storage-batch2-jobs
|
* hapi-fhir-storage-mdm
|
||||||
* %%
|
* %%
|
||||||
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
* %%
|
* %%
|
||||||
|
|
|
@ -1,5 +1,25 @@
|
||||||
package ca.uhn.fhir.mdm.batch2;
|
package ca.uhn.fhir.mdm.batch2;
|
||||||
|
|
||||||
|
/*-
|
||||||
|
* #%L
|
||||||
|
* hapi-fhir-storage-mdm
|
||||||
|
* %%
|
||||||
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
|
* %%
|
||||||
|
* Licensed under the Apache License, Version 2.0 (the "License");
|
||||||
|
* you may not use this file except in compliance with the License.
|
||||||
|
* You may obtain a copy of the License at
|
||||||
|
*
|
||||||
|
* http://www.apache.org/licenses/LICENSE-2.0
|
||||||
|
*
|
||||||
|
* Unless required by applicable law or agreed to in writing, software
|
||||||
|
* distributed under the License is distributed on an "AS IS" BASIS,
|
||||||
|
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
|
||||||
|
* See the License for the specific language governing permissions and
|
||||||
|
* limitations under the License.
|
||||||
|
* #L%
|
||||||
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.jobs.step.IIdChunkProducer;
|
import ca.uhn.fhir.batch2.jobs.step.IIdChunkProducer;
|
||||||
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
import ca.uhn.fhir.interceptor.model.RequestPartitionId;
|
||||||
import ca.uhn.fhir.jpa.api.pid.IResourcePidList;
|
import ca.uhn.fhir.jpa.api.pid.IResourcePidList;
|
||||||
|
|
|
@ -2,7 +2,7 @@ package ca.uhn.fhir.mdm.batch2.clear;
|
||||||
|
|
||||||
/*-
|
/*-
|
||||||
* #%L
|
* #%L
|
||||||
* hapi-fhir-storage-batch2-jobs
|
* hapi-fhir-storage-mdm
|
||||||
* %%
|
* %%
|
||||||
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
|
||||||
* %%
|
* %%
|
||||||
|
|
Some files were not shown because too many files have changed in this diff Show More
Loading…
Reference in New Issue