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hapi-fhir
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JPA server is almost working

This commit is contained in:
jamesagnew 2014-05-27 18:52:46 -04:00
parent 245533773f
commit 0ad18c0b77
80 changed files with 8051 additions and 578 deletions
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3
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/api/MethodOutcome.java
View File

@ -62,6 +62,9 @@ public class MethodOutcome {
return myOperationOutcome;
}
/**
* @deprecated {@link MethodOutcome#getId()} should return the complete ID including version if it is available
*/
public IdDt getVersionId() {
return myVersionId;
}

14
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/client/BaseClient.java
View File

@ -33,6 +33,7 @@ import java.util.List;
import java.util.Map;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.http.Header;
import org.apache.http.HttpEntity;
import org.apache.http.HttpResponse;
@ -127,13 +128,22 @@ public abstract class BaseClient {
Reader reader = createReaderFromResponse(response);
if (ourLog.isTraceEnabled() || myKeepResponses) {
if (ourLog.isTraceEnabled() || myKeepResponses || theLogRequestAndResponse) {
String responseString = IOUtils.toString(reader);
if (myKeepResponses) {
myLastResponse = response;
myLastResponseBody = responseString;
}
ourLog.trace("FHIR response:\n{}\n{}", response, responseString);
if (theLogRequestAndResponse) {
String message = "HTTP " + response.getStatusLine().getStatusCode()+" " +response.getStatusLine().getReasonPhrase();
if (StringUtils.isNotBlank(responseString)) {
ourLog.info("Client response: {}\n{}", message, responseString);
}else {
ourLog.info("Client response: {}", message, responseString);
}
}else {
ourLog.trace("FHIR response:\n{}\n{}", response, responseString);
}
reader = new StringReader(responseString);
}

127
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/client/GenericClient.java
View File

@ -71,6 +71,8 @@ public class GenericClient extends BaseClient implements IGenericClient {
private HttpRequestBase myLastRequest;
private boolean myLogRequestAndResponse;
/**
* For now, this is a part of the internal API of HAPI - Use with caution as this method may change!
*/
@ -87,7 +89,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
}
ResourceResponseHandler<Conformance> binding = new ResourceResponseHandler<Conformance>(Conformance.class);
Conformance resp = invokeClient(binding, invocation);
Conformance resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -103,7 +105,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
OutcomeResponseHandler binding = new OutcomeResponseHandler(resourceName);
MethodOutcome resp = invokeClient(binding, invocation);
MethodOutcome resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -117,7 +119,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
final String resourceName = myContext.getResourceDefinition(theType).getName();
OutcomeResponseHandler binding = new OutcomeResponseHandler(resourceName);
MethodOutcome resp = invokeClient(binding, invocation);
MethodOutcome resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -138,7 +140,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
}
BundleResponseHandler binding = new BundleResponseHandler(theType);
Bundle resp = invokeClient(binding, invocation);
Bundle resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -148,6 +150,10 @@ public class GenericClient extends BaseClient implements IGenericClient {
return history(theType, new IdDt(theId));
}
public boolean isLogRequestAndResponse() {
return myLogRequestAndResponse;
}
@Override
public <T extends IResource> T read(final Class<T> theType, IdDt theId) {
HttpGetClientInvocation invocation = ReadMethodBinding.createReadInvocation(theId, toResourceName(theType));
@ -156,7 +162,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
}
ResourceResponseHandler<T> binding = new ResourceResponseHandler<T>(theType);
T resp = invokeClient(binding, invocation);
T resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -181,7 +187,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
qualifier = nextValue.getQueryParameterQualifier();
}
qualifier = StringUtils.defaultString(qualifier);
params.put(nextEntry.getKey()+qualifier, valueList);
params.put(nextEntry.getKey() + qualifier, valueList);
}
HttpGetClientInvocation invocation = SearchMethodBinding.createSearchInvocation(toResourceName(theType), params);
@ -190,7 +196,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
}
BundleResponseHandler binding = new BundleResponseHandler(theType);
Bundle resp = invokeClient(binding, invocation);
Bundle resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -201,6 +207,15 @@ public class GenericClient extends BaseClient implements IGenericClient {
myLastRequest = theLastRequest;
}
@Override
public void setLogRequestAndResponse(boolean theLogRequestAndResponse) {
myLogRequestAndResponse = theLogRequestAndResponse;
}
private String toResourceName(Class<? extends IResource> theType) {
return myContext.getResourceDefinition(theType).getName();
}
@Override
public MethodOutcome update(IdDt theIdDt, IResource theResource) {
BaseHttpClientInvocation invocation = UpdateMethodBinding.createUpdateInvocation(theResource, theIdDt, null, myContext);
@ -212,7 +227,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
final String resourceName = def.getName();
OutcomeResponseHandler binding = new OutcomeResponseHandler(resourceName);
MethodOutcome resp = invokeClient(binding, invocation);
MethodOutcome resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -232,7 +247,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
final String resourceName = def.getName();
OutcomeResponseHandler binding = new OutcomeResponseHandler(resourceName);
MethodOutcome resp = invokeClient(binding, invocation);
MethodOutcome resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -244,7 +259,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
}
ResourceResponseHandler<T> binding = new ResourceResponseHandler<T>(theType);
T resp = invokeClient(binding, invocation);
T resp = invokeClient(binding, invocation, myLogRequestAndResponse);
return resp;
}
@ -253,41 +268,6 @@ public class GenericClient extends BaseClient implements IGenericClient {
return vread(theType, new IdDt(theId), new IdDt(theVersionId));
}
private String toResourceName(Class<? extends IResource> theType) {
return myContext.getResourceDefinition(theType).getName();
}
private final class OutcomeResponseHandler implements IClientResponseHandler<MethodOutcome> {
private final String myResourceName;
private OutcomeResponseHandler(String theResourceName) {
myResourceName = theResourceName;
}
@Override
public MethodOutcome invokeClient(String theResponseMimeType, Reader theResponseReader, int theResponseStatusCode, Map<String, List<String>> theHeaders) throws IOException,
BaseServerResponseException {
MethodOutcome response = BaseOutcomeReturningMethodBinding.process2xxResponse(myContext, myResourceName, theResponseStatusCode, theResponseMimeType, theResponseReader, theHeaders);
return response;
}
}
private final class ResourceResponseHandler<T extends IResource> implements IClientResponseHandler<T> {
private Class<T> myType;
public ResourceResponseHandler(Class<T> theType) {
myType = theType;
}
@Override
public T invokeClient(String theResponseMimeType, Reader theResponseReader, int theResponseStatusCode, Map<String, List<String>> theHeaders) throws IOException, BaseServerResponseException {
EncodingEnum respType = EncodingEnum.forContentType(theResponseMimeType);
IParser parser = respType.newParser(myContext);
return parser.parseResource(myType, theResponseReader);
}
}
private final class BundleResponseHandler implements IClientResponseHandler<Bundle> {
private Class<? extends IResource> myType;
@ -297,8 +277,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
}
@Override
public Bundle invokeClient(String theResponseMimeType, Reader theResponseReader, int theResponseStatusCode, Map<String, List<String>> theHeaders) throws IOException,
BaseServerResponseException {
public Bundle invokeClient(String theResponseMimeType, Reader theResponseReader, int theResponseStatusCode, Map<String, List<String>> theHeaders) throws IOException, BaseServerResponseException {
EncodingEnum respType = EncodingEnum.forContentType(theResponseMimeType);
if (respType == null) {
throw NonFhirResponseException.newInstance(theResponseStatusCode, theResponseMimeType, theResponseReader);
@ -312,9 +291,9 @@ public class GenericClient extends BaseClient implements IGenericClient {
private List<ICriterionInternal> myCriterion = new ArrayList<ICriterionInternal>();
private List<Include> myInclude = new ArrayList<Include>();
private boolean myLogRequestAndResponse;
private EncodingEnum myParamEncoding;
private Integer myParamLimit;
private boolean myQueryLogRequestAndResponse;
private String myResourceName;
private Class<? extends IResource> myResourceType;
private List<SortInternal> mySort = new ArrayList<SortInternal>();
@ -329,6 +308,13 @@ public class GenericClient extends BaseClient implements IGenericClient {
myResourceName = theResourceName;
}
private void addParam(Map<String, List<String>> params, String parameterName, String parameterValue) {
if (!params.containsKey(parameterName)) {
params.put(parameterName, new ArrayList<String>());
}
params.get(parameterName).add(parameterValue);
}
@Override
public IQuery and(ICriterion theCriterion) {
myCriterion.add((ICriterionInternal) theCriterion);
@ -337,7 +323,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
@Override
public IQuery andLogRequestAndResponse(boolean theLogRequestAndResponse) {
myLogRequestAndResponse = theLogRequestAndResponse;
myQueryLogRequestAndResponse = theLogRequestAndResponse;
return this;
}
@ -392,7 +378,7 @@ public class GenericClient extends BaseClient implements IGenericClient {
BundleResponseHandler binding = new BundleResponseHandler(myResourceType);
Bundle resp = invokeClient(binding, invocation, myLogRequestAndResponse);
Bundle resp = invokeClient(binding, invocation, myQueryLogRequestAndResponse || myLogRequestAndResponse);
return resp;
}
@ -413,6 +399,12 @@ public class GenericClient extends BaseClient implements IGenericClient {
return this;
}
@Override
public IQuery prettyPrint() {
setPrettyPrint(true);
return this;
}
@Override
public ISort sort() {
SortInternal retVal = new SortInternal(this);
@ -426,19 +418,20 @@ public class GenericClient extends BaseClient implements IGenericClient {
return this;
}
private void addParam(Map<String, List<String>> params, String parameterName, String parameterValue) {
if (!params.containsKey(parameterName)) {
params.put(parameterName, new ArrayList<String>());
}
params.get(parameterName).add(parameterValue);
}
private final class OutcomeResponseHandler implements IClientResponseHandler<MethodOutcome> {
private final String myResourceName;
private OutcomeResponseHandler(String theResourceName) {
myResourceName = theResourceName;
}
@Override
public IQuery prettyPrint() {
setPrettyPrint(true);
return this;
public MethodOutcome invokeClient(String theResponseMimeType, Reader theResponseReader, int theResponseStatusCode, Map<String, List<String>> theHeaders) throws IOException, BaseServerResponseException {
MethodOutcome response = BaseOutcomeReturningMethodBinding.process2xxResponse(myContext, myResourceName, theResponseStatusCode, theResponseMimeType, theResponseReader, theHeaders);
return response;
}
}
private class QueryInternal implements IUntypedQuery {
@ -455,6 +448,22 @@ public class GenericClient extends BaseClient implements IGenericClient {
}
private final class ResourceResponseHandler<T extends IResource> implements IClientResponseHandler<T> {
private Class<T> myType;
public ResourceResponseHandler(Class<T> theType) {
myType = theType;
}
@Override
public T invokeClient(String theResponseMimeType, Reader theResponseReader, int theResponseStatusCode, Map<String, List<String>> theHeaders) throws IOException, BaseServerResponseException {
EncodingEnum respType = EncodingEnum.forContentType(theResponseMimeType);
IParser parser = respType.newParser(myContext);
return parser.parseResource(myType, theResponseReader);
}
}
private class SortInternal implements ISort {
private ForInternal myFor;

9
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/client/IGenericClient.java
View File

@ -184,4 +184,13 @@ public interface IGenericClient {
*/
<T extends IResource> T vread(Class<T> theType, String theId, String theVersionId);
/**
* If set to <code>true</code>, the client will log all requests and all responses. This
* is probably not a good production setting since it will result in a lot of extra logging, but
* it can be useful for troubleshooting.
*
* @param theLogRequestAndResponse Should requests and responses be logged
*/
void setLogRequestAndResponse(boolean theLogRequestAndResponse);
}

2
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/gclient/ReferenceParam.java
View File

@ -45,7 +45,7 @@ public class ReferenceParam implements IParam {
* the logical ID or the absolute URL of the resource)
*/
public ICriterion hasId(IdDt theId) {
return new StringCriterion(getParamName(), theId.getValueAsString());
return new StringCriterion(getParamName(), theId.getValue());
}
/**

9
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/method/BaseOutcomeReturningMethodBinding.java
View File

@ -420,15 +420,20 @@ public abstract class BaseOutcomeReturningMethodBinding extends BaseMethodBindin
}
protected static void parseContentLocation(MethodOutcome theOutcomeToPopulate, String theResourceName, String theLocationHeader) {
if (StringUtils.isBlank(theLocationHeader)) {
return;
}
theOutcomeToPopulate.setId(new IdDt(theLocationHeader));
String resourceNamePart = "/" + theResourceName + "/";
int resourceIndex = theLocationHeader.lastIndexOf(resourceNamePart);
if (resourceIndex > -1) {
int idIndexStart = resourceIndex + resourceNamePart.length();
int idIndexEnd = theLocationHeader.indexOf('/', idIndexStart);
if (idIndexEnd == -1) {
theOutcomeToPopulate.setId(new IdDt(theLocationHeader.substring(idIndexStart)));
// nothing
} else {
theOutcomeToPopulate.setId(new IdDt(theLocationHeader.substring(idIndexStart, idIndexEnd)));
String versionIdPart = "/_history/";
int historyIdStart = theLocationHeader.indexOf(versionIdPart, idIndexEnd);
if (historyIdStart != -1) {

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/server/RestfulServer.java
View File

@ -471,9 +471,9 @@ public class RestfulServer extends HttpServlet {
StringBuffer requestUrl = theRequest.getRequestURL();
String servletContextPath = "";
if (theRequest.getServletContext() != null) {
servletContextPath = StringUtils.defaultIfBlank(theRequest.getServletContext().getContextPath(), servletPath);
} else {
servletContextPath = servletPath;
servletContextPath = StringUtils.defaultString(theRequest.getServletContext().getContextPath());
// } else {
//servletContextPath = servletPath;
}
if (ourLog.isTraceEnabled()) {

21
hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/client/ClientTest.java
View File

@ -1,8 +1,11 @@
package ca.uhn.fhir.rest.client;
import static org.hamcrest.Matchers.*;
import static org.junit.Assert.*;
import static org.mockito.Mockito.*;
import static org.hamcrest.Matchers.containsString;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.fail;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.when;
import java.io.InputStream;
import java.io.StringReader;
@ -104,7 +107,7 @@ public class ClientTest {
assertEquals(HttpPost.class, capt.getValue().getClass());
HttpPost post = (HttpPost) capt.getValue();
assertThat(IOUtils.toString(post.getEntity().getContent()), StringContains.containsString("<Patient"));
assertEquals("100", response.getId().getValue());
assertEquals("http://example.com/fhir/Patient/100/_history/200", response.getId().getValue());
assertEquals("200", response.getVersionId().getValue());
}
@ -151,7 +154,7 @@ public class ClientTest {
assertEquals(HttpPost.class, capt.getValue().getClass());
HttpPost post = (HttpPost) capt.getValue();
assertThat(IOUtils.toString(post.getEntity().getContent()), StringContains.containsString("<Patient"));
assertEquals("100", response.getId().getValue());
assertEquals("http://example.com/fhir/Patient/100/_history/200", response.getId().getValue());
assertEquals("200", response.getVersionId().getValue());
}
@ -179,7 +182,7 @@ public class ClientTest {
assertEquals(HttpPost.class, capt.getValue().getClass());
HttpPost post = (HttpPost) capt.getValue();
assertThat(IOUtils.toString(post.getEntity().getContent()), StringContains.containsString("<Patient"));
assertEquals("100", response.getId().getValue());
assertEquals("http://example.com/fhir/Patient/100/_history/200", response.getId().getValue());
assertEquals("200", response.getVersionId().getValue());
Header[] headers = post.getHeaders("Category");
@ -941,7 +944,7 @@ public class ClientTest {
HttpPut post = (HttpPut) capt.getValue();
assertThat(post.getURI().toASCIIString(), StringEndsWith.endsWith("/Patient/100"));
assertThat(IOUtils.toString(post.getEntity().getContent()), StringContains.containsString("<Patient"));
assertEquals("100", response.getId().getValue());
assertEquals("http://example.com/fhir/Patient/100/_history/200", response.getId().getValue());
assertEquals("200", response.getVersionId().getValue());
}
@ -1003,7 +1006,7 @@ public class ClientTest {
assertThat(post.getURI().toASCIIString(), StringEndsWith.endsWith("/Patient/100"));
assertThat(IOUtils.toString(post.getEntity().getContent()), StringContains.containsString("<Patient"));
assertThat(post.getFirstHeader("Content-Location").getValue(), StringEndsWith.endsWith("/Patient/100/_history/200"));
assertEquals("100", response.getId().getValue());
assertEquals("http://example.com/fhir/Patient/100/_history/200", response.getId().getValue());
assertEquals("200", response.getVersionId().getValue());
}
@ -1027,7 +1030,7 @@ public class ClientTest {
HttpPost post = (HttpPost) capt.getValue();
assertThat(post.getURI().toASCIIString(), StringEndsWith.endsWith("/Patient/_validate"));
assertThat(IOUtils.toString(post.getEntity().getContent()), StringContains.containsString("<Patient"));
assertEquals("100", response.getId().getValue());
assertEquals("http://example.com/fhir/Patient/100/_history/200", response.getId().getValue());
assertEquals("200", response.getVersionId().getValue());
}

3
hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/client/TransactionClientTest.java
View File

@ -86,8 +86,9 @@ public class TransactionClientTest {
ourLog.info(ctx.newXmlParser().setPrettyPrint(true).encodeBundleToString(bundle));
assertEquals(2, bundle.size());
assertEquals("Patient/testPersistWithSimpleLinkP01", bundle.getEntries().get(0).getId().getValue());
assertEquals("http://foo/Patient/testPersistWithSimpleLinkP01", bundle.getEntries().get(0).getId().getValue());
assertEquals("http://foo/Patient/testPersistWithSimpleLinkP01", bundle.getEntries().get(0).getLinkSelf().getValue());
assertEquals(null, bundle.getEntries().get(0).getLinkAlternate().getValue());
assertTrue(bundle.getEntries().get(1).getId().isEmpty());

17
hapi-fhir-base/src/test/java/ca/uhn/fhir/rest/server/ResfulServerMethodTest.java
View File

@ -214,7 +214,7 @@ public class ResfulServerMethodTest {
Bundle bundle = ourCtx.newXmlParser().parseBundle(responseContent);
BundleEntry entry0 = bundle.getEntries().get(0);
assertEquals("http://localhost:" + ourPort + "/Patient/1", entry0.getLinkSelf().getValue());
assertEquals("1", entry0.getId().getValue());
assertEquals("http://localhost:" + ourPort + "/Patient/1", entry0.getId().getValue());
httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?withIncludes=include1&_include=include2&_include=include3&_format=json");
status = ourClient.execute(httpGet);
@ -223,7 +223,8 @@ public class ResfulServerMethodTest {
ourLog.info(responseContent);
bundle = ourCtx.newJsonParser().parseBundle(responseContent);
entry0 = bundle.getEntries().get(0);
assertEquals("http://localhost:" + ourPort + "/Patient/1?_format=json", entry0.getLinkSelf().getValue());
// Should not include params such as _format=json
assertEquals("http://localhost:" + ourPort + "/Patient/1", entry0.getLinkSelf().getValue());
}
@ -426,8 +427,8 @@ public class ResfulServerMethodTest {
// Older resource
{
BundleEntry olderEntry = bundle.getEntries().get(0);
assertEquals("222", olderEntry.getId().getValue());
assertThat(olderEntry.getLinkSelf().getValue(), StringEndsWith.endsWith("/Patient/222/_history/1"));
assertEquals("http://localhost:" + ourPort + "/Patient/222", olderEntry.getId().getValue());
assertEquals("http://localhost:" + ourPort + "/Patient/222/_history/1", olderEntry.getLinkSelf().getValue());
InstantDt pubExpected = new InstantDt(new Date(10000L));
InstantDt pubActualRes = (InstantDt) olderEntry.getResource().getResourceMetadata().get(ResourceMetadataKeyEnum.PUBLISHED);
InstantDt pubActualBundle = olderEntry.getPublished();
@ -442,8 +443,8 @@ public class ResfulServerMethodTest {
// Newer resource
{
BundleEntry newerEntry = bundle.getEntries().get(1);
assertEquals("222", newerEntry.getId().getValue());
assertThat(newerEntry.getLinkSelf().getValue(), StringEndsWith.endsWith("/Patient/222/_history/2"));
assertEquals("http://localhost:" + ourPort + "/Patient/222", newerEntry.getId().getValue());
assertEquals("http://localhost:" + ourPort + "/Patient/222/_history/2", newerEntry.getLinkSelf().getValue());
InstantDt pubExpected = new InstantDt(new Date(10000L));
InstantDt pubActualRes = (InstantDt) newerEntry.getResource().getResourceMetadata().get(ResourceMetadataKeyEnum.PUBLISHED);
InstantDt pubActualBundle = newerEntry.getPublished();
@ -475,7 +476,7 @@ public class ResfulServerMethodTest {
// Older resource
{
BundleEntry olderEntry = bundle.getEntries().get(0);
assertEquals("1", olderEntry.getId().getValue());
assertEquals("http://localhost:" + ourPort + "/Patient/1", olderEntry.getId().getValue());
assertThat(olderEntry.getLinkSelf().getValue(), StringEndsWith.endsWith("/Patient/1/_history/1"));
InstantDt pubExpected = new InstantDt(new Date(10000L));
InstantDt pubActualRes = (InstantDt) olderEntry.getResource().getResourceMetadata().get(ResourceMetadataKeyEnum.PUBLISHED);
@ -491,7 +492,7 @@ public class ResfulServerMethodTest {
// Newer resource
{
BundleEntry newerEntry = bundle.getEntries().get(1);
assertEquals("1", newerEntry.getId().getValue());
assertEquals("http://localhost:" + ourPort + "/Patient/1", newerEntry.getId().getValue());
assertThat(newerEntry.getLinkSelf().getValue(), StringEndsWith.endsWith("/Patient/1/_history/2"));
InstantDt pubExpected = new InstantDt(new Date(10000L));
InstantDt pubActualRes = (InstantDt) newerEntry.getResource().getResourceMetadata().get(ResourceMetadataKeyEnum.PUBLISHED);

150
hapi-fhir-jpaserver-base/.classpath
View File

@ -1,152 +1,28 @@
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry including="**/*.java" kind="src" path="src/test/java"/>
<classpathentry excluding="**/*.java" kind="src" path="src/test/resources"/>
<classpathentry including="**/*.java" kind="src" path="src/main/java"/>
<classpathentry excluding="**/*.java" kind="src" path="src/main/resources"/>
<classpathentry exported="true" kind="var" path="M2_REPO/javax/activation/activation/1.1/activation-1.1.jar" sourcepath="M2_REPO/javax/activation/activation/1.1/activation-1.1-sources.jar"/>
<classpathentry exported="true" kind="var" path="M2_REPO/javax/json/javax.json-api/1.0/javax.json-api-1.0.jar" sourcepath="M2_REPO/javax/json/javax.json-api/1.0/javax.json-api-1.0-sources.jar"/>
<classpathentry exported="true" kind="var" path="M2_REPO/javax/mail/javax.mail-api/1.5.0/javax.mail-api-1.5.0.jar" sourcepath="M2_REPO/javax/mail/javax.mail-api/1.5.0/javax.mail-api-1.5.0-sources.jar">
<classpathentry kind="src" output="target/test-classes" path="src/test/java">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/javax/mail/javax.mail-api/1.5.0/javax.mail-api-1.5.0-javadoc.jar!/"/>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry exported="true" kind="var" path="M2_REPO/javax/transaction/jta/1.1/jta-1.1.jar" sourcepath="M2_REPO/javax/transaction/jta/1.1/jta-1.1-sources.jar"/>
<classpathentry exported="true" kind="var" path="M2_REPO/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2.jar" sourcepath="M2_REPO/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2-sources.jar"/>
<classpathentry exported="true" kind="var" path="M2_REPO/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.jar" sourcepath="M2_REPO/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final-sources.jar"/>
<classpathentry exported="true" kind="var" path="M2_REPO/antlr/antlr/2.7.7/antlr-2.7.7.jar"/>
<classpathentry exported="true" kind="var" path="M2_REPO/aopalliance/aopalliance/1.0/aopalliance-1.0.jar" sourcepath="M2_REPO/aopalliance/aopalliance/1.0/aopalliance-1.0-sources.jar"/>
<classpathentry exported="true" kind="var" path="M2_REPO/com/fasterxml/classmate/1.0.0/classmate-1.0.0.jar" sourcepath="M2_REPO/com/fasterxml/classmate/1.0.0/classmate-1.0.0-sources.jar"/>
<classpathentry exported="true" kind="var" path="M2_REPO/commons-codec/commons-codec/1.9/commons-codec-1.9.jar" sourcepath="M2_REPO/commons-codec/commons-codec/1.9/commons-codec-1.9-sources.jar">
<classpathentry excluding="**/*.java" including="**/*.java" kind="src" path="src/test/resources"/>
<classpathentry kind="src" output="target/classes" path="src/main/java">
<attributes>
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</classpath>

37
hapi-fhir-jpaserver-base/.project
View File

@ -1,15 +1,24 @@
<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>hapi-fhir-jpaserver-base</name>
<comment>NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment>
<projects>
<project>hapi-fhir-base</project>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>
<name>hapi-fhir-jpaserver-base</name>
<comment>NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment>
<projects>
<project>hapi-fhir-base</project>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.m2e.core.maven2Builder</name>
<arguments>
</arguments>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.m2e.core.maven2Nature</nature>
<nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>

4
hapi-fhir-jpaserver-base/.settings/org.eclipse.core.resources.prefs
View File

@ -1,2 +1,6 @@
eclipse.preferences.version=1
encoding//src/main/java=UTF-8
encoding//src/main/resources=UTF-8
encoding//src/test/java=UTF-8
encoding//src/test/resources=UTF-8
encoding/<project>=UTF-8

10
hapi-fhir-jpaserver-base/.settings/org.eclipse.jdt.core.prefs
View File

@ -1,8 +1,8 @@
#Sat May 03 09:10:27 MST 2014
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
org.eclipse.jdt.core.compiler.compliance=1.6
org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
org.eclipse.jdt.core.compiler.source=1.7
org.eclipse.jdt.core.compiler.compliance=1.7
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
org.eclipse.jdt.core.compiler.source=1.6

4
hapi-fhir-jpaserver-base/.settings/org.eclipse.m2e.core.prefs Normal file
View File

@ -0,0 +1,4 @@
activeProfiles=
eclipse.preferences.version=1
resolveWorkspaceProjects=true
version=1

14
hapi-fhir-jpaserver-base/pom.xml
View File

@ -146,7 +146,8 @@
<derby_version>10.10.2.0</derby_version>
<guava_version>14.0.1</guava_version>
<hamcrest_version>1.3</hamcrest_version>
<hibernate_version>4.3.5.Final</hibernate_version>
<!-- <hibernate_version>4.3.5.Final</hibernate_version>-->
<hibernate_version>4.2.12.Final</hibernate_version>
<hibernate_validator_version>5.1.0.Final</hibernate_validator_version>
<jetty_version>9.1.1.v20140108</jetty_version>
<mockito_version>1.9.5</mockito_version>
@ -161,8 +162,8 @@
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.7</source>
<target>1.7</target>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
</plugins>
@ -177,6 +178,13 @@
<target>SCRIPT</target>
<skip>false</skip>
</configuration>
<dependencies>
<dependency>
<groupId>org.hibernate</groupId>
<artifactId>hibernate-core</artifactId>
<version>${hibernate_version}</version>
</dependency>
</dependencies>
<executions>
<execution>
<id>o10g</id>

12
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseFhirDao.java
View File

@ -77,7 +77,6 @@ public abstract class BaseFhirDao {
}
entity.setVersion(entity.getVersion() + 1);
theResource.setId(new IdDt(entity.getResourceType(), entity.getId().toString(), Long.toString(entity.getVersion())));
final List<ResourceIndexedSearchParamString> stringParams = extractSearchParamStrings(entity, theResource);
final List<ResourceIndexedSearchParamToken> tokenParams = extractSearchParamTokens(entity, theResource);
@ -140,6 +139,9 @@ public abstract class BaseFhirDao {
myEntityManager.persist(next);
}
myEntityManager.flush();
theResource.setId(new IdDt(entity.getResourceType(), entity.getId().toString(), Long.toString(entity.getVersion())));
return entity;
}
@ -175,7 +177,7 @@ public abstract class BaseFhirDao {
String typeString = nextValue.getResourceId().getResourceType();
if (isBlank(typeString)) {
continue;
throw new InvalidRequestException("Invalid resource reference found at path[" + nextPath + "] - Does not contain resource type - " + nextValue.getReference().getValue());
}
Class<? extends IResource> type = getContext().getResourceDefinition(typeString).getImplementingClass();
String id = nextValue.getResourceId().getUnqualifiedId();
@ -344,7 +346,7 @@ public abstract class BaseFhirDao {
retVal.add(nextEntity);
} else {
if (nextObject instanceof HumanNameDt) {
ArrayList<StringDt> allNames = new ArrayList<>();
ArrayList<StringDt> allNames = new ArrayList<StringDt>();
HumanNameDt nextHumanName = (HumanNameDt) nextObject;
allNames.addAll(nextHumanName.getFamily());
allNames.addAll(nextHumanName.getGiven());
@ -357,7 +359,7 @@ public abstract class BaseFhirDao {
retVal.add(nextEntity);
}
} else if (nextObject instanceof AddressDt) {
ArrayList<StringDt> allNames = new ArrayList<>();
ArrayList<StringDt> allNames = new ArrayList<StringDt>();
AddressDt nextAddress = (AddressDt) nextObject;
allNames.addAll(nextAddress.getLine());
allNames.add(nextAddress.getCity());
@ -460,7 +462,7 @@ public abstract class BaseFhirDao {
protected IFhirResourceDao<? extends IResource> getDao(Class<? extends IResource> theType) {
if (myResourceTypeToDao == null) {
myResourceTypeToDao = new HashMap<>();
myResourceTypeToDao = new HashMap<Class<? extends IResource>, IFhirResourceDao<?>>();
for (IFhirResourceDao<?> next : myResourceDaos) {
myResourceTypeToDao.put(next.getResourceType(), next);
}

39
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDao.java
View File

@ -71,7 +71,8 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDao.class);
@PersistenceContext(name = "FHIR_UT", type = PersistenceContextType.TRANSACTION, unitName = "FHIR_UT")
// name = "FHIR_UT", type = PersistenceContextType.TRANSACTION, unitName = "FHIR_UT"
@PersistenceContext()
private EntityManager myEntityManager;
@Autowired
@ -97,12 +98,12 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
// ourLog.info("Saving links: {}", links);
TransactionTemplate template = new TransactionTemplate(myPlatformTransactionManager);
template.setPropagationBehavior(TransactionTemplate.PROPAGATION_REQUIRES_NEW);
template.setReadOnly(false);
template.execute(new TransactionCallback<ResourceTable>() {
@Override
public ResourceTable doInTransaction(TransactionStatus theStatus) {
// TransactionTemplate template = new TransactionTemplate(myPlatformTransactionManager);
// template.setPropagationBehavior(TransactionTemplate.PROPAGATION_REQUIRES_NEW);
// template.setReadOnly(false);
// template.execute(new TransactionCallback<ResourceTable>() {
// @Override
// public ResourceTable doInTransaction(TransactionStatus theStatus) {
// myEntityManager.persist(entity);
// for (ResourceIndexedSearchParamString next : stringParams) {
// myEntityManager.persist(next);
@ -120,9 +121,9 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
// myEntityManager.persist(next);
// }
updateEntity(theResource, entity,false);
return entity;
}
});
// return entity;
// }
// });
MethodOutcome outcome = toMethodOutcome(entity);
return outcome;
@ -163,7 +164,7 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
}
@PostConstruct
public void postConstruct() throws Exception {
public void postConstruct() {
myResourceName = getContext().getResourceDefinition(myResourceType).getName();
}
@ -195,7 +196,7 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
} else {
pids = searchForIdsWithAndOr(theParams);
if (pids.isEmpty()) {
return new ArrayList<>();
return new ArrayList<T>();
}
}
@ -210,7 +211,7 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
}
TypedQuery<ResourceTable> q = myEntityManager.createQuery(cq);
List<T> retVal = new ArrayList<>();
List<T> retVal = new ArrayList<T>();
for (ResourceTable next : q.getResultList()) {
T resource = toResource(next);
retVal.add(resource);
@ -489,8 +490,14 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
if (params instanceof ReferenceParam) {
ReferenceParam ref = (ReferenceParam) params;
String resourceId = ref.getValueAsQueryToken();
if (resourceId.contains("/")) {
IdDt dt = new IdDt(resourceId);
resourceId = dt.getUnqualifiedId();
}
if (isBlank(ref.getChain())) {
Long targetPid = Long.valueOf(ref.getValueAsQueryToken());
Long targetPid = Long.valueOf(resourceId);
ourLog.info("Searching for resource link with target PID: {}", targetPid);
Predicate eq = builder.equal(from.get("myTargetResourcePid"), targetPid);
codePredicates.add(eq);
@ -505,7 +512,7 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
RuntimeChildResourceDefinition resDef = (RuntimeChildResourceDefinition) def;
resourceTypes = resDef.getResourceTypes();
} else {
resourceTypes = new ArrayList<>();
resourceTypes = new ArrayList<Class<? extends IResource>>();
RuntimeResourceDefinition resDef = getContext().getResourceDefinition(ref.getResourceType());
resourceTypes.add(resDef.getImplementingClass());
}
@ -522,7 +529,7 @@ public class FhirResourceDao<T extends IResource> extends BaseFhirDao implements
continue;
}
IQueryParameterType chainValue = toParameterType(param.getParamType(), ref.getValueAsQueryToken());
IQueryParameterType chainValue = toParameterType(param.getParamType(), resourceId);
Set<Long> pids = dao.searchForIds(ref.getChain(), chainValue);
if (pids.isEmpty()) {
continue;

7
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirSystemDao.java
View File

@ -22,7 +22,8 @@ import ca.uhn.fhir.util.FhirTerser;
public class FhirSystemDao extends BaseFhirDao implements IFhirSystemDao {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirSystemDao.class);
@PersistenceContext(name = "FHIR_UT", type = PersistenceContextType.TRANSACTION, unitName = "FHIR_UT")
//name = "FHIR_UT", type = PersistenceContextType.TRANSACTION, unitName = "FHIR_UT"
@PersistenceContext()
private EntityManager myEntityManager;
private FhirContext myContext = new FhirContext();
@ -34,8 +35,8 @@ public class FhirSystemDao extends BaseFhirDao implements IFhirSystemDao {
FhirTerser terser = myContext.newTerser();
Map<IdDt, IdDt> idConversions = new HashMap<>();
List<ResourceTable> persistedResources = new ArrayList<>();
Map<IdDt, IdDt> idConversions = new HashMap<IdDt, IdDt>();
List<ResourceTable> persistedResources = new ArrayList<ResourceTable>();
for (IResource nextResource : theResources) {
IdDt nextId = nextResource.getId();
if (nextId == null) {

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceHistoryTable.java
View File

@ -51,7 +51,7 @@ public class ResourceHistoryTable extends BaseHasResource implements Serializabl
public Collection<ResourceHistoryTag> getTags() {
if (myTags == null) {
myTags = new ArrayList<>();
myTags = new ArrayList<ResourceHistoryTag>();
}
return myTags;
}

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceHistoryTag.java
View File

@ -3,7 +3,6 @@ package ca.uhn.fhir.jpa.entity;
import java.io.Serializable;
import javax.persistence.Entity;
import javax.persistence.ForeignKey;
import javax.persistence.GeneratedValue;
import javax.persistence.GenerationType;
import javax.persistence.Id;
@ -27,8 +26,7 @@ public class ResourceHistoryTag extends BaseTag implements Serializable {
@JoinColumn(name="RES_TYPE", referencedColumnName="RES_TYPE"),
@JoinColumn(name="PID", referencedColumnName="PID"),
@JoinColumn(name="VERSION", referencedColumnName="VERSION")
}, foreignKey=@ForeignKey(name="FK_HT_RT"))
@org.hibernate.annotations.ForeignKey(name="FK_HT_RT")
}/*, foreignKey=@ForeignKey(name="FK_HT_RT")*/)
private ResourceHistoryTable myResourceHistory;
public ResourceHistoryTag() {

5
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceIndexedSearchParamDate.java
View File

@ -9,9 +9,8 @@ import javax.persistence.Temporal;
import javax.persistence.TemporalType;
@Entity
@Table(name = "HFJ_SPIDX_DATE")
@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_DATE",indexes= {
@org.hibernate.annotations.Index(name="IDX_SP_DATE", columnNames= {"SP_VALUE_LOW","SP_VALUE_HIGH"})})
@Table(name = "HFJ_SPIDX_DATE" /*, indexes= {@Index(name="IDX_SP_DATE", columnList= "SP_VALUE_LOW,SP_VALUE_HIGH")}*/)
@org.hibernate.annotations.Table(appliesTo = "HFJ_SPIDX_DATE", indexes= {@org.hibernate.annotations.Index(name="IDX_SP_DATE", columnNames= {"SP_VALUE_LOW","SP_VALUE_HIGH"})})
public class ResourceIndexedSearchParamDate extends BaseResourceIndexedSearchParam {
private static final long serialVersionUID = 1L;

6
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceIndexedSearchParamNumber.java
View File

@ -4,13 +4,11 @@ import java.math.BigDecimal;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Index;
import javax.persistence.Table;
@Entity
@Table(name = "HFJ_SPIDX_NUMBER", indexes= {@Index(name="IDX_SP_NUMBER", columnList="SP_VALUE")})
@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_NUMBER",indexes= {
@org.hibernate.annotations.Index(name="IDX_SP_NUMBER", columnNames= {"SP_VALUE"})})
@Table(name = "HFJ_SPIDX_NUMBER" /*, indexes= {@Index(name="IDX_SP_NUMBER", columnList="SP_VALUE")}*/ )
@org.hibernate.annotations.Table(appliesTo = "HFJ_SPIDX_NUMBER", indexes= {@org.hibernate.annotations.Index(name="IDX_SP_NUMBER", columnNames= {"SP_VALUE"})})
public class ResourceIndexedSearchParamNumber extends BaseResourceIndexedSearchParam {
private static final long serialVersionUID = 1L;

3
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceIndexedSearchParamString.java
View File

@ -2,11 +2,10 @@ package ca.uhn.fhir.jpa.entity;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Index;
import javax.persistence.Table;
@Entity
@Table(name = "HFJ_SPIDX_STRING", indexes= {@Index(name="IDX_SP_STRING", columnList="SP_VALUE_NORMALIZED")})
@Table(name = "HFJ_SPIDX_STRING"/*, indexes= {@Index(name="IDX_SP_STRING", columnList="SP_VALUE_NORMALIZED")}*/)
@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_STRING",indexes= {
@org.hibernate.annotations.Index(name="IDX_SP_STRING", columnNames= {"SP_VALUE_NORMALIZED"})})
public class ResourceIndexedSearchParamString extends BaseResourceIndexedSearchParam {

7
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceIndexedSearchParamToken.java
View File

@ -2,13 +2,12 @@ package ca.uhn.fhir.jpa.entity;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.Index;
import javax.persistence.Table;
@Entity
@Table(name = "HFJ_SPIDX_TOKEN", indexes = { @Index(name = "IDX_SP_TOKEN", columnList = "SP_SYSTEM,SP_VALUE") })
//@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_TOKEN", indexes= {
// @org.hibernate.annotations.Index(name="IDX_SP_TOKEN", columnNames= {"SP_SYSTEM","SP_VALUE"})})
@Table(name = "HFJ_SPIDX_TOKEN" /*, indexes = { @Index(name = "IDX_SP_TOKEN", columnList = "SP_SYSTEM,SP_VALUE") }*/)
@org.hibernate.annotations.Table(appliesTo="HFJ_SPIDX_TOKEN", indexes= {
@org.hibernate.annotations.Index(name="IDX_SP_TOKEN", columnNames= {"SP_SYSTEM","SP_VALUE"})})
public class ResourceIndexedSearchParamToken extends BaseResourceIndexedSearchParam {
private static final long serialVersionUID = 1L;

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceLink.java
View File

@ -14,7 +14,7 @@ import javax.persistence.Table;
import org.apache.commons.lang3.Validate;
@Entity
@Table(name = "HFJ_RES_LINK")
@Table(name = "HFJ_RES_LINK"/*, indexes= {@Index(name="IDX_RL_TPATHRES", columnList= "SRC_PATH,TARGET_RESOURCE_ID")}*/)
@org.hibernate.annotations.Table(appliesTo="HFJ_RES_LINK",indexes= {
@org.hibernate.annotations.Index(name="IDX_RL_TPATHRES", columnNames= {"SRC_PATH","TARGET_RESOURCE_ID"})})
public class ResourceLink implements Serializable {

12
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceTable.java
View File

@ -94,35 +94,35 @@ public class ResourceTable extends BaseHasResource implements Serializable {
public Collection<ResourceIndexedSearchParamDate> getParamsDate() {
if (myParamsDate == null) {
myParamsDate = new ArrayList<>();
myParamsDate = new ArrayList<ResourceIndexedSearchParamDate>();
}
return myParamsDate;
}
public Collection<ResourceIndexedSearchParamNumber> getParamsNumber() {
if (myParamsNumber == null) {
myParamsNumber = new ArrayList<>();
myParamsNumber = new ArrayList<ResourceIndexedSearchParamNumber>();
}
return myParamsNumber;
}
public Collection<ResourceIndexedSearchParamString> getParamsString() {
if (myParamsString == null) {
myParamsString = new ArrayList<>();
myParamsString = new ArrayList<ResourceIndexedSearchParamString>();
}
return myParamsString;
}
public Collection<ResourceIndexedSearchParamToken> getParamsToken() {
if (myParamsToken == null) {
myParamsToken = new ArrayList<>();
myParamsToken = new ArrayList<ResourceIndexedSearchParamToken>();
}
return myParamsToken;
}
public Collection<ResourceLink> getResourceLinks() {
if (myResourceLinks == null) {
myResourceLinks = new ArrayList<>();
myResourceLinks = new ArrayList<ResourceLink>();
}
return myResourceLinks;
}
@ -133,7 +133,7 @@ public class ResourceTable extends BaseHasResource implements Serializable {
public Collection<ResourceTag> getTags() {
if (myTags == null) {
myTags = new ArrayList<>();
myTags = new ArrayList<ResourceTag>();
}
return myTags;
}

15
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/BaseJpaResourceProvider.java → hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/JpaResourceProvider.java
View File

@ -20,11 +20,19 @@ import ca.uhn.fhir.rest.annotation.Update;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.server.IResourceProvider;
public abstract class BaseJpaResourceProvider<T extends IResource> implements IResourceProvider {
public class JpaResourceProvider<T extends IResource> implements IResourceProvider {
private FhirContext myContext=new FhirContext();
private IFhirResourceDao<T> myDao;
public JpaResourceProvider() {
//nothing
}
public JpaResourceProvider(IFhirResourceDao<T> theDao) {
myDao=theDao;
}
@Create
public MethodOutcome create(@ResourceParam T theResource) {
return myDao.create(theResource);
@ -63,4 +71,9 @@ public abstract class BaseJpaResourceProvider<T extends IResource> implements IR
return myDao.update(theResource, theId);
}
@Override
public Class<? extends IResource> getResourceType() {
return myDao.getResourceType();
}
}

11
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/SystemProvider.java → hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/JpaSystemProvider.java
View File

@ -9,10 +9,19 @@ import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.rest.annotation.Transaction;
import ca.uhn.fhir.rest.annotation.TransactionParam;
public class SystemProvider {
public class JpaSystemProvider {
private IFhirSystemDao myDao;
public JpaSystemProvider() {
//nothing
}
public JpaSystemProvider(IFhirSystemDao theDao) {
myDao=theDao;
}
@Required
public void setDao(IFhirSystemDao theDao) {
myDao = theDao;

99
hapi-fhir-jpaserver-base/src/main/resources/logback.xml
View File

@ -1,99 +0,0 @@
<configuration scan="true" scanPeriod="30 seconds">
<appender name="EJBFILE"
class="ch.qos.logback.core.rolling.RollingFileAppender">
<file>/var/log/glassfish/svcret/svcret-ejb.log</file>
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>INFO</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
<rollingPolicy class="ch.qos.logback.core.rolling.TimeBasedRollingPolicy">
<fileNamePattern>/var/log/glassfish/svcret/svcret-ejb.log_%d{yyyy-MM-dd'T'HH'-00-00'}</fileNamePattern>
</rollingPolicy>
</appender>
<appender name="ERRORFILE"
class="ch.qos.logback.core.rolling.RollingFileAppender">
<file>/var/log/glassfish/svcret/svcret-error.log</file>
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>ERROR</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
<rollingPolicy class="ch.qos.logback.core.rolling.FixedWindowRollingPolicy">
<fileNamePattern>/var/log/glassfish/svcret/svcret-error-%i.log</fileNamePattern>
<minIndex>1</minIndex>
<maxIndex>10</maxIndex>
</rollingPolicy>
<triggeringPolicy class="ch.qos.logback.core.rolling.SizeBasedTriggeringPolicy">
<maxFileSize>5MB</maxFileSize>
</triggeringPolicy>
</appender>
<appender name="DEBUGFILE"
class="ch.qos.logback.core.rolling.RollingFileAppender">
<file>/var/log/glassfish/svcret/svcret-debug.log</file>
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>DEBUG</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
<rollingPolicy class="ch.qos.logback.core.rolling.FixedWindowRollingPolicy">
<fileNamePattern>/var/log/glassfish/svcret/svcret-debug-%i.log</fileNamePattern>
<minIndex>1</minIndex>
<maxIndex>10</maxIndex>
</rollingPolicy>
<triggeringPolicy class="ch.qos.logback.core.rolling.SizeBasedTriggeringPolicy">
<maxFileSize>5MB</maxFileSize>
</triggeringPolicy>
</appender>
<appender name="ADMINFILE"
class="ch.qos.logback.core.rolling.RollingFileAppender">
<file>/var/log/glassfish/svcret/svcret-admin.log</file>
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>DEBUG</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
<rollingPolicy class="ch.qos.logback.core.rolling.TimeBasedRollingPolicy">
<fileNamePattern>/var/log/glassfish/svcret/svcret-admin.log_%d{yyyy-MM-dd'T'HH'-00-00'}</fileNamePattern>
</rollingPolicy>
</appender>
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>WARN</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
</appender>
<logger name="net.svcret.admin" level="DEBUG" additivity="false">
<appender-ref ref="STDOUT" />
<appender-ref ref="ADMINFILE" />
<appender-ref ref="ERRORFILE" />
<appender-ref ref="DEBUGFILE" />
</logger>
<logger name="net.svcret" level="DEBUG" additivity="false">
<appender-ref ref="STDOUT" />
<appender-ref ref="EJBFILE" />
<appender-ref ref="ERRORFILE" />
<appender-ref ref="DEBUGFILE" />
</logger>
<root level="info">
<appender-ref ref="STDOUT" />
<appender-ref ref="EJBFILE" />
<appender-ref ref="ERRORFILE" />
<appender-ref ref="DEBUGFILE" />
</root>
</configuration>

12
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoTest.java
View File

@ -220,7 +220,7 @@ public class FhirResourceDaoTest {
ourPatientDao.create(patient);
}
Map<String, IQueryParameterType> params = new HashMap<>();
Map<String, IQueryParameterType> params = new HashMap<String, IQueryParameterType>();
List<Patient> patients = ourPatientDao.search(params);
assertTrue(patients.size() >= 2);
}
@ -241,19 +241,19 @@ public class FhirResourceDaoTest {
ourPatientDao.create(patient);
}
Map<String, IQueryParameterType> params = new HashMap<>();
Map<String, IQueryParameterType> params = new HashMap<String, IQueryParameterType>();
params.put(Patient.SP_FAMILY, new StringDt("testSearchNameParam01Fam"));
List<Patient> patients = ourPatientDao.search(params);
assertEquals(1, patients.size());
assertEquals(id1.getUnqualifiedId(), patients.get(0).getId().getUnqualifiedId());
params = new HashMap<>();
params = new HashMap<String, IQueryParameterType>();
params.put(Patient.SP_FAMILY, new StringDt("testSearchNameParam01Giv"));
patients = ourPatientDao.search(params);
assertEquals(1, patients.size());
assertEquals(id1.getUnqualifiedId(), patients.get(0).getId().getUnqualifiedId());
params = new HashMap<>();
params = new HashMap<String, IQueryParameterType>();
params.put(Patient.SP_FAMILY, new StringDt("testSearchNameParam01Foo"));
patients = ourPatientDao.search(params);
assertEquals(0, patients.size());
@ -368,7 +368,7 @@ public class FhirResourceDaoTest {
ourPatientDao.create(patient);
}
Map<String, IQueryParameterType> params = new HashMap<>();
Map<String, IQueryParameterType> params = new HashMap<String, IQueryParameterType>();
params.put(Patient.SP_FAMILY, new StringDt("Tester_testSearchStringParam"));
List<Patient> patients = ourPatientDao.search(params);
assertEquals(2, patients.size());
@ -394,7 +394,7 @@ public class FhirResourceDaoTest {
ourPatientDao.create(patient);
}
Map<String, IQueryParameterType> params = new HashMap<>();
Map<String, IQueryParameterType> params = new HashMap<String, IQueryParameterType>();
params.put(Patient.SP_FAMILY, new StringDt("testSearchStringParamWithNonNormalized_hora"));
List<Patient> patients = ourPatientDao.search(params);
assertEquals(2, patients.size());

16
hapi-fhir-jpaserver-base/src/test/resources/logback.xml Normal file
View File

@ -0,0 +1,16 @@
<configuration scan="true" scanPeriod="30 seconds">
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>INFO</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
</appender>
<root>
<appender-ref ref="STDOUT" />
</root>
</configuration>

161
hapi-fhir-jpaserver-test/.classpath
View File

@ -1,166 +1,33 @@
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry excluding="**/*.java" kind="src" output="target/test-classes" path="src/test/resources"/>
<classpathentry excluding="**/*.java" including="**/*.java" kind="src" output="target/test-classes" path="src/test/resources"/>
<classpathentry kind="src" path="target/generated-sources/tinder"/>
<classpathentry kind="src" path="src/test/java"/>
<classpathentry kind="var" path="M2_REPO/javax/activation/activation/1.1/activation-1.1.jar" sourcepath="M2_REPO/javax/activation/activation/1.1/activation-1.1-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/javax/json/javax.json-api/1.0/javax.json-api-1.0.jar" sourcepath="M2_REPO/javax/json/javax.json-api/1.0/javax.json-api-1.0-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/javax/mail/javax.mail-api/1.5.0/javax.mail-api-1.5.0.jar" sourcepath="M2_REPO/javax/mail/javax.mail-api/1.5.0/javax.mail-api-1.5.0-sources.jar">
<classpathentry kind="src" output="target/test-classes" path="src/test/java">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/javax/mail/javax.mail-api/1.5.0/javax.mail-api-1.5.0-javadoc.jar!/"/>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/javax/servlet/javax.servlet-api/3.1.0/javax.servlet-api-3.1.0.jar" sourcepath="M2_REPO/javax/servlet/javax.servlet-api/3.1.0/javax.servlet-api-3.1.0-sources.jar">
<classpathentry kind="src" output="target/classes" path="src/main/java">
<attributes>
<attribute name="javadoc_location" value="jar:file:/Users/james/.m2/repository/javax/servlet/javax.servlet-api/3.1.0/javax.servlet-api-3.1.0-javadoc.jar!/"/>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="var" path="M2_REPO/javax/transaction/jta/1.1/jta-1.1.jar" sourcepath="M2_REPO/javax/transaction/jta/1.1/jta-1.1-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2.jar" sourcepath="M2_REPO/javax/xml/stream/stax-api/1.0-2/stax-api-1.0-2-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final.jar" sourcepath="M2_REPO/javax/validation/validation-api/1.1.0.Final/validation-api-1.1.0.Final-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/antlr/antlr/2.7.7/antlr-2.7.7.jar"/>
<classpathentry kind="var" path="M2_REPO/aopalliance/aopalliance/1.0/aopalliance-1.0.jar" sourcepath="M2_REPO/aopalliance/aopalliance/1.0/aopalliance-1.0-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/com/fasterxml/classmate/1.0.0/classmate-1.0.0.jar" sourcepath="M2_REPO/com/fasterxml/classmate/1.0.0/classmate-1.0.0-sources.jar"/>
<classpathentry kind="var" path="M2_REPO/commons-codec/commons-codec/1.9/commons-codec-1.9.jar" sourcepath="M2_REPO/commons-codec/commons-codec/1.9/commons-codec-1.9-sources.jar">
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hapi-fhir-jpaserver-test/.classpath_ Normal file
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</classpath>

39
hapi-fhir-jpaserver-test/.project
View File

@ -1,16 +1,25 @@
<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>hapi-fhir-jpaserver-test</name>
<comment>NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment>
<projects>
<project>hapi-fhir-base</project>
<project>hapi-fhir-jpaserver-base</project>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>
<name>hapi-fhir-jpaserver-test</name>
<comment>NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment>
<projects>
<project>hapi-fhir-base</project>
<project>hapi-fhir-jpaserver-base</project>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.m2e.core.maven2Builder</name>
<arguments>
</arguments>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.m2e.core.maven2Nature</nature>
<nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>

16
hapi-fhir-jpaserver-test/.project_ Normal file
View File

@ -0,0 +1,16 @@
<projectDescription>
<name>hapi-fhir-jpaserver-test</name>
<comment>NO_M2ECLIPSE_SUPPORT: Project files created with the maven-eclipse-plugin are not supported in M2Eclipse.</comment>
<projects>
<project>hapi-fhir-base</project>
<project>hapi-fhir-jpaserver-base</project>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
</natures>
</projectDescription>

5
hapi-fhir-jpaserver-test/.settings/org.eclipse.core.resources.prefs
View File

@ -1,2 +1,7 @@
eclipse.preferences.version=1
encoding//src/main/java=UTF-8
encoding//src/main/resources=UTF-8
encoding//src/test/java=UTF-8
encoding//src/test/java/ca/uhn/fhir/jpa/test/Upload.java=UTF-8
encoding//src/test/resources=UTF-8
encoding/<project>=UTF-8

6
hapi-fhir-jpaserver-test/.settings/org.eclipse.jdt.core.prefs
View File

@ -1,5 +1,5 @@
#Sat May 03 16:44:33 MST 2014
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.source=1.7
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
org.eclipse.jdt.core.compiler.compliance=1.7
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
org.eclipse.jdt.core.compiler.source=1.7

4
hapi-fhir-jpaserver-test/.settings/org.eclipse.m2e.core.prefs Normal file
View File

@ -0,0 +1,4 @@
activeProfiles=
eclipse.preferences.version=1
resolveWorkspaceProjects=true
version=1

6
hapi-fhir-jpaserver-test/pom.xml
View File

@ -8,7 +8,6 @@
<relativePath>../pom.xml</relativePath>
</parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-test</artifactId>
<packaging>jar</packaging>
@ -25,6 +24,11 @@
<artifactId>thymeleaf</artifactId>
<version>2.1.2.RELEASE</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.1.1</version>
</dependency>
<dependency>
<groupId>junit</groupId>

28
hapi-fhir-jpaserver-test/src/test/java/ca/uhn/fhir/jpa/test/CompleteResourceProviderTest.java
View File

@ -75,7 +75,7 @@ public class CompleteResourceProviderTest {
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode("urn:system", "testSearchByIdentifier01")).encodedJson().prettyPrint().execute();
assertEquals(1, actual.size());
assertEquals(p1Id, actual.getEntries().get(0).getId());
assertEquals(p1Id.getUnqualifiedId(), actual.getEntries().get(0).getId().getUnqualifiedId());
}
@ -88,30 +88,39 @@ public class CompleteResourceProviderTest {
Patient p1 = new Patient();
p1.addIdentifier().setSystem("urn:system").setValue("testSearchByResourceChain01");
p1.addName().addFamily("testSearchByResourceChainFamily01").addGiven("testSearchByResourceChainGiven01");
p1.setManagingOrganization(new ResourceReferenceDt("Organization/o1id"));
p1.setManagingOrganization(new ResourceReferenceDt(o1id));
IdDt p1Id = ourClient.create(p1).getId();
//@formatter:off
Bundle actual = ourClient.search()
.forResource(Patient.class)
.where(Patient.PROVIDER.hasId(o1id))
.encodedJson().prettyPrint().execute();
.where(Patient.PROVIDER.hasId(o1id.getUnqualifiedId()))
.encodedJson().andLogRequestAndResponse(true).prettyPrint().execute();
//@formatter:on
assertEquals(1, actual.size());
assertEquals(p1Id, actual.getEntries().get(0).getId());
assertEquals(p1Id.getUnqualifiedId(), actual.getEntries().get(0).getId().getUnqualifiedId());
//@formatter:off
actual = ourClient.search()
.forResource(Patient.class)
.where(Patient.PROVIDER.hasId(o1id.getValue()))
.encodedJson().andLogRequestAndResponse(true).prettyPrint().execute();
//@formatter:on
assertEquals(1, actual.size());
assertEquals(p1Id.getUnqualifiedId(), actual.getEntries().get(0).getId().getUnqualifiedId());
}
@Test
public void testInsertBadReference() {
Patient p1 = new Patient();
p1.addIdentifier().setSystem("urn:system").setValue("testSearchByResourceChain01");
p1.addName().addFamily("testSearchByResourceChainFamily01").addGiven("testSearchByResourceChainGiven01");
p1.setManagingOrganization(new ResourceReferenceDt("Organization/132312323"));
try {
ourClient.create(p1).getId();
fail();
ourClient.create(p1).getId();
fail();
} catch (InvalidRequestException e) {
assertThat(e.getMessage(), containsString("Organization/132312323"));
}
@ -172,6 +181,7 @@ public class CompleteResourceProviderTest {
ourCtx = restServer.getFhirContext();
ourClient = ourCtx.newRestfulGenericClient(serverBase);
ourClient.setLogRequestAndResponse(true);
}
}

4
hapi-fhir-jpaserver-test/src/test/java/ca/uhn/fhir/jpa/test/QuestionnaireResourceProvider.java
View File

@ -1,10 +1,10 @@
package ca.uhn.fhir.jpa.test;
import ca.uhn.fhir.jpa.provider.BaseJpaResourceProvider;
import ca.uhn.fhir.jpa.provider.JpaResourceProvider;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.Questionnaire;
public class QuestionnaireResourceProvider extends BaseJpaResourceProvider<Questionnaire> {
public class QuestionnaireResourceProvider extends JpaResourceProvider<Questionnaire> {
@Override
public Class<? extends IResource> getResourceType() {

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hapi-fhir-jpaserver-test/src/test/resources/logback.xml Normal file
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<configuration scan="true" scanPeriod="30 seconds">
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>INFO</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
</appender>
<root>
<appender-ref ref="STDOUT" />
</root>
</configuration>

37
hapi-fhir-jpaserver-uhnfhirtest/.classpath Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" output="target/classes" path="src/main/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" path="target/generated-sources/tinder"/>
<classpathentry excluding="**" kind="src" output="target/classes" path="src/main/resources">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="src" output="target/test-classes" path="src/test/java">
<attributes>
<attribute name="optional" value="true"/>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry excluding="**" kind="src" output="target/test-classes" path="src/test/resources">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.6">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="output" path="target/classes"/>
</classpath>

3
hapi-fhir-jpaserver-uhnfhirtest/.gitignore vendored Normal file
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myUnitTestDB/
target/
/bin

23
hapi-fhir-jpaserver-uhnfhirtest/.project Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<projectDescription>
<name>hapi-fhir-jpaserver-uhnfhirtest</name>
<comment></comment>
<projects>
</projects>
<buildSpec>
<buildCommand>
<name>org.eclipse.jdt.core.javabuilder</name>
<arguments>
</arguments>
</buildCommand>
<buildCommand>
<name>org.eclipse.m2e.core.maven2Builder</name>
<arguments>
</arguments>
</buildCommand>
</buildSpec>
<natures>
<nature>org.eclipse.jdt.core.javanature</nature>
<nature>org.eclipse.m2e.core.maven2Nature</nature>
</natures>
</projectDescription>

6
hapi-fhir-jpaserver-uhnfhirtest/.settings/org.eclipse.core.resources.prefs Normal file
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@ -0,0 +1,6 @@
eclipse.preferences.version=1
encoding//src/main/java=UTF-8
encoding//src/main/resources=UTF-8
encoding//src/test/java=UTF-8
encoding//src/test/resources=UTF-8
encoding/<project>=UTF-8

8
hapi-fhir-jpaserver-uhnfhirtest/.settings/org.eclipse.jdt.core.prefs Normal file
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eclipse.preferences.version=1
org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.6
org.eclipse.jdt.core.compiler.compliance=1.6
org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
org.eclipse.jdt.core.compiler.problem.forbiddenReference=warning
org.eclipse.jdt.core.compiler.source=1.6

4
hapi-fhir-jpaserver-uhnfhirtest/.settings/org.eclipse.m2e.core.prefs Normal file
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activeProfiles=
eclipse.preferences.version=1
resolveWorkspaceProjects=true
version=1

168
hapi-fhir-jpaserver-uhnfhirtest/pom.xml Normal file
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.4-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
<artifactId>hapi-fhir-jpaserver-uhnfhirtest</artifactId>
<name>HAPI FHIR JPA Server - Test Project</name>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-base</artifactId>
<version>0.4-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<version>2.1.2.RELEASE</version>
</dependency>
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.1.1</version>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>17.0</version>
</dependency>
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.0.1</version>
<scope>provided</scope>
</dependency>
</dependencies>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-tinder-plugin</artifactId>
<version>0.4-SNAPSHOT</version>
<executions>
<execution>
<id>buildclient</id>
<goals>
<goal>generate-jparest-server</goal>
</goals>
<configuration>
<packageBase>ca.uhn.test.jpasrv</packageBase>
<baseResourceNames>
<!-- <baseResourceName>account</baseResourceName> -->
<!-- <baseResourceName>activitydefinition-extensions</baseResourceName> -->
<baseResourceName>adversereaction</baseResourceName>
<baseResourceName>alert</baseResourceName>
<baseResourceName>allergyintolerance</baseResourceName>
<baseResourceName>appointmentresponse</baseResourceName>
<baseResourceName>appointment</baseResourceName>
<baseResourceName>availability</baseResourceName>
<baseResourceName>careplan</baseResourceName>
<baseResourceName>claim</baseResourceName>
<baseResourceName>composition</baseResourceName>
<baseResourceName>conceptmap</baseResourceName>
<baseResourceName>condition</baseResourceName>
<baseResourceName>conformance</baseResourceName>
<baseResourceName>coverage</baseResourceName>
<baseResourceName>deviceobservationreport</baseResourceName>
<baseResourceName>device</baseResourceName>
<baseResourceName>diagnosticorder</baseResourceName>
<baseResourceName>diagnosticreport</baseResourceName>
<baseResourceName>documentmanifest</baseResourceName>
<baseResourceName>documentreference</baseResourceName>
<baseResourceName>encounter</baseResourceName>
<!-- <baseResourceName>familyhistory-genetics-profile</baseResourceName> -->
<baseResourceName>familyhistory</baseResourceName>
<baseResourceName>geneexpression</baseResourceName>
<baseResourceName>geneticanalysis</baseResourceName>
<baseResourceName>group</baseResourceName>
<baseResourceName>gvfmeta</baseResourceName>
<baseResourceName>gvfvariant</baseResourceName>
<baseResourceName>imagingstudy</baseResourceName>
<baseResourceName>immunizationrecommendation</baseResourceName>
<baseResourceName>immunization</baseResourceName>
<baseResourceName>list</baseResourceName>
<baseResourceName>location</baseResourceName>
<baseResourceName>media</baseResourceName>
<baseResourceName>medicationadministration</baseResourceName>
<baseResourceName>medicationdispense</baseResourceName>
<baseResourceName>medicationprescription</baseResourceName>
<baseResourceName>medication</baseResourceName>
<baseResourceName>medicationstatement</baseResourceName>
<baseResourceName>messageheader</baseResourceName>
<baseResourceName>microarray</baseResourceName>
<!-- <baseResourceName>namespace</baseResourceName> -->
<baseResourceName>observation</baseResourceName>
<baseResourceName>operationoutcome</baseResourceName>
<baseResourceName>orderresponse</baseResourceName>
<baseResourceName>order</baseResourceName>
<baseResourceName>organization</baseResourceName>
<baseResourceName>other</baseResourceName>
<baseResourceName>patient</baseResourceName>
<!--<baseResourceName>person</baseResourceName>-->
<baseResourceName>practitioner</baseResourceName>
<baseResourceName>procedure</baseResourceName>
<baseResourceName>profile</baseResourceName>
<!-- <baseResourceName>protocol</baseResourceName> -->
<!-- <baseResourceName>provenance-extensions</baseResourceName> -->
<baseResourceName>provenance</baseResourceName>
<baseResourceName>query</baseResourceName>
<!-- <baseResourceName>questionnaire-extensions</baseResourceName> -->
<baseResourceName>questionnaire</baseResourceName>
<baseResourceName>relatedperson</baseResourceName>
<baseResourceName>remittance</baseResourceName>
<!-- <baseResourceName>resource</baseResourceName> -->
<baseResourceName>securityevent</baseResourceName>
<!--<baseResourceName>sequence</baseResourceName>-->
<baseResourceName>sequencinganalysis</baseResourceName>
<baseResourceName>sequencinglab</baseResourceName>
<baseResourceName>slot</baseResourceName>
<baseResourceName>specimen</baseResourceName>
<baseResourceName>substance</baseResourceName>
<baseResourceName>supply</baseResourceName>
<!--<baseResourceName>template</baseResourceName>-->
<baseResourceName>test</baseResourceName>
<baseResourceName>user</baseResourceName>
<!-- <baseResourceName>valueset-extensions</baseResourceName> -->
<baseResourceName>valueset</baseResourceName>
<!--<baseResourceName>vcfmeta</baseResourceName>-->
<!--<baseResourceName>vcfvariant</baseResourceName>-->
</baseResourceNames>
<buildDatatypes>true</buildDatatypes>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
</plugins>
</build>
<packaging>war</packaging>
</project>

98
hapi-fhir-jpaserver-uhnfhirtest/pom.xml.versionsBackup Normal file
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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>0.3-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-test</artifactId>
<packaging>jar</packaging>
<name>HAPI FHIR JPA Server - Tester</name>
<dependencies>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-base</artifactId>
<version>0.3-SNAPSHOT</version>
</dependency>
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>${junit_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>com.google.guava</groupId>
<artifactId>guava</artifactId>
<version>17.0</version>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlets</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-server</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-servlet</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-util</artifactId>
<version>${jetty_version}</version>
<scope>test</scope>
</dependency>
</dependencies>
<properties>
<junit_version>4.11</junit_version>
<jetty_version>9.1.1.v20140108</jetty_version>
</properties>
<build>
<pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<configuration>
<source>1.7</source>
<target>1.7</target>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
</plugins>
</build>
</project>

51
hapi-fhir-jpaserver-uhnfhirtest/src/main/java/ca/uhn/fhirtest/TestRestfulServer.java Normal file
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package ca.uhn.fhirtest;
import java.sql.DriverManager;
import java.sql.SQLException;
import java.util.Collection;
import org.springframework.context.support.ClassPathXmlApplicationContext;
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
import ca.uhn.fhir.jpa.provider.JpaSystemProvider;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.RestfulServer;
public class TestRestfulServer extends RestfulServer {
private static final long serialVersionUID = 1L;
private ClassPathXmlApplicationContext myAppCtx;
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(TestRestfulServer.class);
@Override
protected void initialize() {
super.initialize();
try {
DriverManager.getConnection("jdbc:derby:directory:" + System.getProperty("fhir.db.location") + ";create=true");
} catch (Exception e) {
ourLog.info("Failed to create database: {}",e.getMessage());
}
myAppCtx = new ClassPathXmlApplicationContext("fhir-spring-uhnfhirtest-config.xml");
Collection<IResourceProvider> beans = myAppCtx.getBeansOfType(IResourceProvider.class).values();
for (IResourceProvider nextResourceProvider : beans) {
ourLog.info(" * Have resource provider for: {}", nextResourceProvider.getResourceType().getSimpleName());
}
setResourceProviders(beans);
IFhirSystemDao systemDao = myAppCtx.getBean(IFhirSystemDao.class);
JpaSystemProvider sp = new JpaSystemProvider(systemDao);
setPlainProviders(sp);
}
@Override
public void destroy() {
super.destroy();
myAppCtx.close();
}
}

41
hapi-fhir-jpaserver-uhnfhirtest/src/main/resources/META-INF/fhirtest_persistence.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<persistence xmlns="http://java.sun.com/xml/ns/persistence"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://java.sun.com/xml/ns/persistence http://java.sun.com/xml/ns/persistence/persistence_2_0.xsd"
version="2.0">
<persistence-unit name="FHIR_UT" transaction-type="RESOURCE_LOCAL">
<provider>org.hibernate.ejb.HibernatePersistence</provider>
<class>ca.uhn.fhir.jpa.entity.ResourceHistoryTable</class>
<class>ca.uhn.fhir.jpa.entity.ResourceHistoryTag</class>
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamDate</class>
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamNumber</class>
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamString</class>
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamToken</class>
<class>ca.uhn.fhir.jpa.entity.ResourceLink</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTable</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTag</class>
<exclude-unlisted-classes>true</exclude-unlisted-classes>
<properties>
<!--
<property name="hibernate.connection.url" value="jdbc:hsqldb:directory:fhirtest-database" />
<property name="hibernate.connection.driver_class" value="org.hsqldb.jdbcDriver" />
-->
<property name="hibernate.dialect" value="org.hibernate.dialect.DerbyTenSevenDialect" />
<property name="hibernate.hbm2ddl.auto" value="update" />
<property name="hibernate.connection.username" value="sa" />
<property name="hibernate.connection.password" value="" />
<property name="hibernate.jdbc.batch_size" value="0" />
<property name="hibernate.cache.use_minimal_puts" value="false" />
<property name="hibernate.show_sql" value="false" />
<property name="hibernate.cache.use_query_cache" value="false" />
<property name="hibernate.cache.use_second_level_cache" value="false" />
<property name="hibernate.cache.use_structured_entries" value="false" />
<!--
<property name="hibernate.cache.region.factory_class" value="org.hibernate.cache.ehcache.SingletonEhCacheRegionFactory" />
-->
</properties>
</persistence-unit>
</persistence>

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hapi-fhir-jpaserver-uhnfhirtest/src/main/resources/fhir-spring-uhnfhirtest-config.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"
xmlns:p="http://www.springframework.org/schema/p" xmlns:tx="http://www.springframework.org/schema/tx" xmlns:task="http://www.springframework.org/schema/task" xmlns:util="http://www.springframework.org/schema/util"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.0.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx.xsd
http://www.springframework.org/schema/task http://www.springframework.org/schema/task/spring-task.xsd
http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-2.0.xsd
"
default-autowire="no" default-lazy-init="false">
<context:annotation-config />
<context:mbean-server />
<bean id="myDiagnosticReportDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.DiagnosticReport"/>
</bean>
<bean id="myDiagnosticReportRp" class="ca.uhn.test.jpasrv.DiagnosticReportResourceProvider">
<property name="dao" ref="myDiagnosticReportDao"/>
</bean>
<bean id="myPatientDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Patient"/>
</bean>
<bean id="myPatientRp" class="ca.uhn.test.jpasrv.PatientResourceProvider">
<property name="dao" ref="myPatientDao"/>
</bean>
<bean id="myObservationDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Observation"/>
</bean>
<bean id="myObservationRp" class="ca.uhn.test.jpasrv.ObservationResourceProvider">
<property name="dao" ref="myObservationDao"/>
</bean>
<bean id="myOrganizationDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Organization"/>
</bean>
<bean id="myOrganizationRp" class="ca.uhn.test.jpasrv.OrganizationResourceProvider">
<property name="dao" ref="myOrganizationDao"/>
</bean>
<bean id="myLocationDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Location"/>
</bean>
<bean id="myLocationRp" class="ca.uhn.test.jpasrv.LocationResourceProvider">
<property name="dao" ref="myLocationDao"/>
</bean>
<bean id="myQuestionnaireDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Questionnaire"/>
</bean>
<bean id="myQuestionnaireRp" class="ca.uhn.test.jpasrv.QuestionnaireResourceProvider">
<property name="dao" ref="myQuestionnaireDao"/>
</bean>
<bean id="mySystemDao" class="ca.uhn.fhir.jpa.dao.FhirSystemDao">
</bean>
<bean id="myPersistenceDataSource" class="org.springframework.jdbc.datasource.DriverManagerDataSource" lazy-init="true">
<!-- ;create=true /opt/glassfish/glassfish4/glassfish/nodes/localhost-domain1/fhirtest/fhirdb -->
<property name="url" value="jdbc:derby:directory:#{systemProperties['fhir.db.location']}" />
</bean>
<bean id="myEntityManagerFactory" class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
<property name="dataSource" ref="myPersistenceDataSource" />
<property name="persistenceXmlLocation" value="classpath:META-INF/fhirtest_persistence.xml" />
<property name="persistenceUnitName" value="FHIR_UT" />
<property name="jpaVendorAdapter">
<bean class="org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter">
<property name="showSql" value="false" />
<property name="generateDdl" value="true" />
<property name="databasePlatform" value="org.hibernate.dialect.DerbyTenSevenDialect" />
</bean>
</property>
</bean>
<bean id="myTxManager" class="org.springframework.orm.jpa.JpaTransactionManager">
<property name="entityManagerFactory" ref="myEntityManagerFactory" />
</bean>
<tx:annotation-driven transaction-manager="myTxManager" />
</beans>

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hapi-fhir-jpaserver-uhnfhirtest/src/main/resources/logback.xml Normal file
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<configuration scan="true" scanPeriod="30 seconds">
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>INFO</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
</appender>
<root>
<appender-ref ref="STDOUT" />
</root>
</configuration>

17
hapi-fhir-jpaserver-uhnfhirtest/src/main/webapp/WEB-INF/web.xml Normal file
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<web-app xmlns="http://java.sun.com/xml/ns/javaee"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
version="3.0" xsi:schemaLocation="http://java.sun.com/xml/ns/javaee ./xsd/web-app_3_0.xsd">
<!-- Servlets -->
<servlet>
<servlet-name>fhirServlet</servlet-name>
<servlet-class>ca.uhn.fhirtest.TestRestfulServer</servlet-class>
<load-on-startup>1</load-on-startup>
</servlet>
<servlet-mapping>
<servlet-name>fhirServlet</servlet-name>
<url-pattern>/base/*</url-pattern>
</servlet-mapping>
</web-app>

2422
hapi-fhir-jpaserver-uhnfhirtest/src/main/webapp/WEB-INF/xsd/javaee_6.xsd Normal file
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737
hapi-fhir-jpaserver-uhnfhirtest/src/main/webapp/WEB-INF/xsd/javaee_web_services_client_1_3.xsd Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<xsd:schema xmlns="http://www.w3.org/2001/XMLSchema"
targetNamespace="http://java.sun.com/xml/ns/javaee"
xmlns:javaee="http://java.sun.com/xml/ns/javaee"
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
elementFormDefault="qualified"
attributeFormDefault="unqualified"
version="1.3">
<xsd:annotation>
<xsd:documentation>
DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
Copyright 2003-2009 Sun Microsystems, Inc. All rights reserved.
The contents of this file are subject to the terms of either the
GNU General Public License Version 2 only ("GPL") or the Common
Development and Distribution License("CDDL") (collectively, the
"License"). You may not use this file except in compliance with
the License. You can obtain a copy of the License at
https://glassfish.dev.java.net/public/CDDL+GPL.html or
glassfish/bootstrap/legal/LICENSE.txt. See the License for the
specific language governing permissions and limitations under the
License.
When distributing the software, include this License Header
Notice in each file and include the License file at
glassfish/bootstrap/legal/LICENSE.txt. Sun designates this
particular file as subject to the "Classpath" exception as
provided by Sun in the GPL Version 2 section of the License file
that accompanied this code. If applicable, add the following
below the License Header, with the fields enclosed by brackets []
replaced by your own identifying information:
"Portions Copyrighted [year] [name of copyright owner]"
Contributor(s):
If you wish your version of this file to be governed by only the
CDDL or only the GPL Version 2, indicate your decision by adding
"[Contributor] elects to include this software in this
distribution under the [CDDL or GPL Version 2] license." If you
don't indicate a single choice of license, a recipient has the
option to distribute your version of this file under either the
CDDL, the GPL Version 2 or to extend the choice of license to its
licensees as provided above. However, if you add GPL Version 2
code and therefore, elected the GPL Version 2 license, then the
option applies only if the new code is made subject to such
option by the copyright holder.
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
(C) Copyright International Business Machines Corporation 2002
</xsd:documentation>
</xsd:annotation>
<!-- **************************************************** -->
<xsd:complexType name="service-refType">
<xsd:annotation>
<xsd:documentation>
The service-ref element declares a reference to a Web
service. It contains optional description, display name and
icons, a declaration of the required Service interface,
an optional WSDL document location, an optional set
of JAX-RPC mappings, an optional QName for the service element,
an optional set of Service Endpoint Interfaces to be resolved
by the container to a WSDL port, and an optional set of handlers.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:group ref="javaee:descriptionGroup"/>
<xsd:element name="service-ref-name"
type="javaee:jndi-nameType">
<xsd:annotation>
<xsd:documentation>
The service-ref-name element declares logical name that the
components in the module use to look up the Web service. It
is recommended that all service reference names start with
"service/".
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="service-interface"
type="javaee:fully-qualified-classType">
<xsd:annotation>
<xsd:documentation>
The service-interface element declares the fully qualified class
name of the JAX-RPC Service interface the client depends on.
In most cases the value will be javax.xml.rpc.Service. A JAX-RPC
generated Service Interface class may also be specified.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="service-ref-type"
type="javaee:fully-qualified-classType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
The service-ref-type element declares the type of the service-ref
element that is injected or returned when a JNDI lookup is done.
This must be either a fully qualified name of Service class or
the fully qualified name of service endpoint interface class.
This is only used with JAX-WS runtime where the corresponding
@WebServiceRef annotation can be used to denote both a Service
or a Port.
If this is not specified, then the type of service-ref element
that is injected or returned when a JNDI lookup is done is
always a Service interface/class.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="wsdl-file"
type="javaee:xsdAnyURIType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
The wsdl-file element contains the URI location of a WSDL
file. The location is relative to the root of the module.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="jaxrpc-mapping-file"
type="javaee:pathType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
The jaxrpc-mapping-file element contains the name of a file that
describes the JAX-RPC mapping between the Java interaces used by
the application and the WSDL description in the wsdl-file. The
file name is a relative path within the module file.
This is not required when JAX-WS based runtime is used.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="service-qname"
type="javaee:xsdQNameType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
The service-qname element declares the specific WSDL service
element that is being refered to. It is not specified if no
wsdl-file is declared.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="port-component-ref"
type="javaee:port-component-refType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
The port-component-ref element declares a client dependency
on the container for resolving a Service Endpoint Interface
to a WSDL port. It optionally associates the Service Endpoint
Interface with a particular port-component. This is only used
by the container for a Service.getPort(Class) method call.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:choice>
<xsd:element name="handler"
type="javaee:handlerType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
Declares the handler for a port-component. Handlers can
access the init-param name/value pairs using the
HandlerInfo interface. If port-name is not specified, the
handler is assumed to be associated with all ports of the
service.
To be used with JAX-RPC based runtime only.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="handler-chains"
type="javaee:handler-chainsType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
To be used with JAX-WS based runtime only.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
</xsd:choice>
<xsd:group ref="javaee:resourceGroup"/>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="port-component-refType">
<xsd:annotation>
<xsd:documentation>
The port-component-ref element declares a client dependency
on the container for resolving a Service Endpoint Interface
to a WSDL port. It optionally associates the Service Endpoint
Interface with a particular port-component. This is only used
by the container for a Service.getPort(Class) method call.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:element name="service-endpoint-interface"
type="javaee:fully-qualified-classType">
<xsd:annotation>
<xsd:documentation>
The service-endpoint-interface element defines a fully qualified
Java class that represents the Service Endpoint Interface of a
WSDL port.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="enable-mtom"
type="javaee:true-falseType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
Used to enable or disable SOAP MTOM/XOP mechanism on the client
side for a port-component.
Not to be specified for JAX-RPC runtime
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="mtom-threshold"
type="javaee:xsdNonNegativeIntegerType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
When MTOM is enabled, binary data above this size in bytes
should be XOP encoded or sent as attachment. Default value is 0.
Not to be specified for JAX-RPC runtime
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="addressing"
type="javaee:addressingType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
This specifies the WS-Addressing requirements for a JAX-WS
web service. It corresponds to javax.xml.ws.soap.Addressing
annotation or its feature javax.xml.ws.soap.AddressingFeature.
See the addressingType for more information.
Not to be specified for JAX-RPC runtime
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="respect-binding"
type="javaee:respect-bindingType"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
Corresponds to the javax.xml.ws.RespectBinding annotation
or its corresponding javax.xml.ws.RespectBindingFeature web
service feature. This is used to control whether a JAX-WS
implementation must respect/honor the contents of the
wsdl:binding in the WSDL that is associated with the service.
Not to be specified for JAX-RPC runtime
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="port-component-link"
type="javaee:string"
minOccurs="0"
maxOccurs="1">
<xsd:annotation>
<xsd:documentation>
The port-component-link element links a port-component-ref
to a specific port-component required to be made available
by a service reference.
The value of a port-component-link must be the
port-component-name of a port-component in the same module
or another module in the same application unit. The syntax
for specification follows the syntax defined for ejb-link
in the EJB 2.0 specification.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="handler-chainsType">
<xsd:annotation>
<xsd:documentation>
The handler-chains element defines the handlerchains associated with this
service or service endpoint.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:element name="handler-chain"
type="javaee:handler-chainType"
minOccurs="0"
maxOccurs="unbounded"/>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="handler-chainType">
<xsd:annotation>
<xsd:documentation>
The handler-chain element defines the handlerchain.
Handlerchain can be defined such that the handlers in the
handlerchain operate,all ports of a service, on a specific
port or on a list of protocol-bindings. The choice of elements
service-name-pattern, port-name-pattern and protocol-bindings
are used to specify whether the handlers in handler-chain are
for a service, port or protocol binding. If none of these
choices are specified with the handler-chain element then the
handlers specified in the handler-chain will be applied on
everything.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:choice minOccurs="0"
maxOccurs="1">
<xsd:element name="service-name-pattern"
type="javaee:qname-pattern"/>
<xsd:element name="port-name-pattern"
type="javaee:qname-pattern"/>
<xsd:element name="protocol-bindings"
type="javaee:protocol-bindingListType"/>
</xsd:choice>
<xsd:element name="handler"
type="javaee:handlerType"
minOccurs="1"
maxOccurs="unbounded"/>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<xsd:simpleType name="protocol-bindingListType">
<xsd:annotation>
<xsd:documentation>
Defines the type used for specifying a list of
protocol-bindingType(s). For e.g.
##SOAP11_HTTP ##SOAP12_HTTP ##XML_HTTP
</xsd:documentation>
</xsd:annotation>
<xsd:list itemType="javaee:protocol-bindingType"/>
</xsd:simpleType>
<xsd:simpleType name="protocol-bindingType">
<xsd:annotation>
<xsd:documentation>
Defines the type used for specifying the URI for the
protocol binding used by the port-component. For
portability one could use one of the following tokens that
alias the standard binding types:
##SOAP11_HTTP
##SOAP11_HTTP_MTOM
##SOAP12_HTTP
##SOAP12_HTTP_MTOM
##XML_HTTP
Other specifications could define tokens that start with ##
to alias new standard binding URIs that are introduced.
</xsd:documentation>
</xsd:annotation>
<xsd:union memberTypes="xsd:anyURI javaee:protocol-URIAliasType"/>
</xsd:simpleType>
<xsd:simpleType name="protocol-URIAliasType">
<xsd:annotation>
<xsd:documentation>
Defines the type that is used for specifying tokens that
start with ## which are used to alias existing standard
protocol bindings and support aliases for new standard
binding URIs that are introduced in future specifications.
The following tokens alias the standard protocol binding
URIs:
##SOAP11_HTTP = "http://schemas.xmlsoap.org/wsdl/soap/http"
##SOAP11_HTTP_MTOM =
"http://schemas.xmlsoap.org/wsdl/soap/http?mtom=true"
##SOAP12_HTTP = "http://www.w3.org/2003/05/soap/bindings/HTTP/"
##SOAP12_HTTP_MTOM =
"http://www.w3.org/2003/05/soap/bindings/HTTP/?mtom=true"
##XML_HTTP = "http://www.w3.org/2004/08/wsdl/http"
</xsd:documentation>
</xsd:annotation>
<xsd:restriction base="xsd:token">
<xsd:pattern value="##.+"/>
</xsd:restriction>
</xsd:simpleType>
<xsd:simpleType name="qname-pattern">
<xsd:annotation>
<xsd:documentation>
This is used to specify the QName pattern in the
attribute service-name-pattern and port-name-pattern in
the handler-chain element
For example, the various forms acceptable here for
service-name-pattern attribute in handler-chain element
are :
Exact Name: service-name-pattern="ns1:EchoService"
In this case, handlers specified in this
handler-chain element will apply to all ports with
this exact service name. The namespace prefix must
have been declared in a namespace declaration
attribute in either the start-tag of the element
where the prefix is used or in an an ancestor
element (i.e. an element in whose content the
prefixed markup occurs)
Pattern : service-name-pattern="ns1:EchoService*"
In this case, handlers specified in this
handler-chain element will apply to all ports whose
Service names are like EchoService1, EchoServiceFoo
etc. The namespace prefix must have been declared in
a namespace declaration attribute in either the
start-tag of the element where the prefix is used or
in an an ancestor element (i.e. an element in whose
content the prefixed markup occurs)
Wild Card : service-name-pattern="*"
In this case, handlers specified in this handler-chain
element will apply to ports of all service names.
The same can be applied to port-name attribute in
handler-chain element.
</xsd:documentation>
</xsd:annotation>
<xsd:restriction base="xsd:token">
<xsd:pattern value="\*|([\i-[:]][\c-[:]]*:)?[\i-[:]][\c-[:]]*\*?"/>
</xsd:restriction>
</xsd:simpleType>
<!-- **************************************************** -->
<xsd:complexType name="addressingType">
<xsd:annotation>
<xsd:documentation>
This specifies the WS-Addressing requirements for a JAX-WS web service.
It corresponds to javax.xml.ws.soap.Addressing annotation or its
feature javax.xml.ws.soap.AddressingFeature.
If the "enabled" element is "true", WS-Addressing is enabled.
It means that the endpoint supports WS-Addressing but does not require
its use. The default value for "enabled" is "true".
If the WS-Addressing is enabled and the "required" element is "true",
it means that the endpoint requires WS-Addressing. The default value
for "required" is "false".
If WS-Addressing is enabled, the "responses" element determines
if an endpoint requires the use of only anonymous responses,
or only non-anonymous responses, or all. The value of the "responses"
element must be one of the following:
ANONYMOUS
NON_ANONYMOUS
ALL
The default value for the "responses" is ALL.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:element name="enabled"
type="javaee:true-falseType"
minOccurs="0"
maxOccurs="1"/>
<xsd:element name="required"
type="javaee:true-falseType"
minOccurs="0"
maxOccurs="1"/>
<xsd:element name="responses"
type="javaee:addressing-responsesType"
minOccurs="0"
maxOccurs="1"/>
</xsd:sequence>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="addressing-responsesType">
<xsd:annotation>
<xsd:documentation>
If WS-Addressing is enabled, this type determines if an endpoint
requires the use of only anonymous responses, or only non-anonymous
responses, or all.
</xsd:documentation>
</xsd:annotation>
<xsd:simpleContent>
<xsd:restriction base="javaee:string">
<xsd:enumeration value="ANONYMOUS"/>
<xsd:enumeration value="NON_ANONYMOUS"/>
<xsd:enumeration value="ALL"/>
</xsd:restriction>
</xsd:simpleContent>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="respect-bindingType">
<xsd:annotation>
<xsd:documentation>
Corresponds to the javax.xml.ws.RespectBinding annotation
or its corresponding javax.xml.ws.RespectBindingFeature web
service feature. This is used to control whether a JAX-WS
implementation must respect/honor the contents of the
wsdl:binding in the WSDL that is associated with the service.
If the "enabled" element is "true", wsdl:binding in the
associated WSDL, if any, must be respected/honored.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:element name="enabled"
type="javaee:true-falseType"
minOccurs="0"
maxOccurs="1"/>
</xsd:sequence>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="handlerType">
<xsd:annotation>
<xsd:documentation>
Declares the handler for a port-component, service-ref. Handlers can
access the init-param name/value pairs using the HandlerInfo interface.
Used in: port-component, service-ref
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:group ref="javaee:descriptionGroup"/>
<xsd:element name="handler-name"
type="javaee:string">
<xsd:annotation>
<xsd:documentation>
Defines the name of the handler. The name must be unique within the
module.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="handler-class"
type="javaee:fully-qualified-classType">
<xsd:annotation>
<xsd:documentation>
Defines a fully qualified class name for the handler implementation.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="init-param"
type="javaee:param-valueType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
Not to be specified for JAX-WS runtime
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="soap-header"
type="javaee:xsdQNameType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
Defines the QName of a SOAP header that will be processed by the
handler.
Not to be specified for JAX-WS runtime
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="soap-role"
type="javaee:string"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
The soap-role element contains a SOAP actor definition that the
Handler will play as a role.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="port-name"
type="javaee:string"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
The port-name element defines the WSDL port-name that a
handler should be associated with. If port-name is not
specified, the handler is assumed to be associated with
all ports of the service.
Not to be specified for JAX-WS runtime
</xsd:documentation>
</xsd:annotation>
</xsd:element>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<xsd:group name="service-refGroup">
<xsd:sequence>
<xsd:element name="service-ref"
type="javaee:service-refType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:key name="service-ref_handler-name-key">
<xsd:annotation>
<xsd:documentation>
Defines the name of the handler. The name must be unique
within the module.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:handler"/>
<xsd:field xpath="javaee:handler-name"/>
</xsd:key>
</xsd:element>
</xsd:sequence>
</xsd:group>
</xsd:schema>

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<?xml version="1.0" encoding="UTF-8"?>
<xsd:schema xmlns="http://www.w3.org/2001/XMLSchema"
targetNamespace="http://java.sun.com/xml/ns/javaee"
xmlns:javaee="http://java.sun.com/xml/ns/javaee"
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
elementFormDefault="qualified"
attributeFormDefault="unqualified"
version="2.2">
<xsd:annotation>
<xsd:documentation>
DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
Copyright 2003-2009 Sun Microsystems, Inc. All rights reserved.
The contents of this file are subject to the terms of either the
GNU General Public License Version 2 only ("GPL") or the Common
Development and Distribution License("CDDL") (collectively, the
"License"). You may not use this file except in compliance with
the License. You can obtain a copy of the License at
https://glassfish.dev.java.net/public/CDDL+GPL.html or
glassfish/bootstrap/legal/LICENSE.txt. See the License for the
specific language governing permissions and limitations under the
License.
When distributing the software, include this License Header
Notice in each file and include the License file at
glassfish/bootstrap/legal/LICENSE.txt. Sun designates this
particular file as subject to the "Classpath" exception as
provided by Sun in the GPL Version 2 section of the License file
that accompanied this code. If applicable, add the following
below the License Header, with the fields enclosed by brackets []
replaced by your own identifying information:
"Portions Copyrighted [year] [name of copyright owner]"
Contributor(s):
If you wish your version of this file to be governed by only the
CDDL or only the GPL Version 2, indicate your decision by adding
"[Contributor] elects to include this software in this
distribution under the [CDDL or GPL Version 2] license." If you
don't indicate a single choice of license, a recipient has the
option to distribute your version of this file under either the
CDDL, the GPL Version 2 or to extend the choice of license to its
licensees as provided above. However, if you add GPL Version 2
code and therefore, elected the GPL Version 2 license, then the
option applies only if the new code is made subject to such
option by the copyright holder.
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
This is the XML Schema for the JSP 2.2 deployment descriptor
types. The JSP 2.2 schema contains all the special
structures and datatypes that are necessary to use JSP files
from a web application.
The contents of this schema is used by the web-common_3_0.xsd
file to define JSP specific content.
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
The following conventions apply to all Java EE
deployment descriptor elements unless indicated otherwise.
- In elements that specify a pathname to a file within the
same JAR file, relative filenames (i.e., those not
starting with "/") are considered relative to the root of
the JAR file's namespace. Absolute filenames (i.e., those
starting with "/") also specify names in the root of the
JAR file's namespace. In general, relative names are
preferred. The exception is .war files where absolute
names are preferred for consistency with the Servlet API.
</xsd:documentation>
</xsd:annotation>
<xsd:include schemaLocation="javaee_6.xsd"/>
<!-- **************************************************** -->
<xsd:complexType name="jsp-configType">
<xsd:annotation>
<xsd:documentation>
The jsp-configType is used to provide global configuration
information for the JSP files in a web application. It has
two subelements, taglib and jsp-property-group.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:element name="taglib"
type="javaee:taglibType"
minOccurs="0"
maxOccurs="unbounded"/>
<xsd:element name="jsp-property-group"
type="javaee:jsp-property-groupType"
minOccurs="0"
maxOccurs="unbounded"/>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="jsp-fileType">
<xsd:annotation>
<xsd:documentation>
The jsp-file element contains the full path to a JSP file
within the web application beginning with a `/'.
</xsd:documentation>
</xsd:annotation>
<xsd:simpleContent>
<xsd:restriction base="javaee:pathType"/>
</xsd:simpleContent>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="jsp-property-groupType">
<xsd:annotation>
<xsd:documentation>
The jsp-property-groupType is used to group a number of
files so they can be given global property information.
All files so described are deemed to be JSP files. The
following additional properties can be described:
- Control whether EL is ignored.
- Control whether scripting elements are invalid.
- Indicate pageEncoding information.
- Indicate that a resource is a JSP document (XML).
- Prelude and Coda automatic includes.
- Control whether the character sequence #{ is allowed
when used as a String literal.
- Control whether template text containing only
whitespaces must be removed from the response output.
- Indicate the default contentType information.
- Indicate the default buffering model for JspWriter
- Control whether error should be raised for the use of
undeclared namespaces in a JSP page.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:group ref="javaee:descriptionGroup"/>
<xsd:element name="url-pattern"
type="javaee:url-patternType"
maxOccurs="unbounded"/>
<xsd:element name="el-ignored"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
Can be used to easily set the isELIgnored
property of a group of JSP pages. By default, the
EL evaluation is enabled for Web Applications using
a Servlet 2.4 or greater web.xml, and disabled
otherwise.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="page-encoding"
type="javaee:string"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The valid values of page-encoding are those of the
pageEncoding page directive. It is a
translation-time error to name different encodings
in the pageEncoding attribute of the page directive
of a JSP page and in a JSP configuration element
matching the page. It is also a translation-time
error to name different encodings in the prolog
or text declaration of a document in XML syntax and
in a JSP configuration element matching the document.
It is legal to name the same encoding through
mulitple mechanisms.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="scripting-invalid"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
Can be used to easily disable scripting in a
group of JSP pages. By default, scripting is
enabled.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="is-xml"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
If true, denotes that the group of resources
that match the URL pattern are JSP documents,
and thus must be interpreted as XML documents.
If false, the resources are assumed to not
be JSP documents, unless there is another
property group that indicates otherwise.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="include-prelude"
type="javaee:pathType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
The include-prelude element is a context-relative
path that must correspond to an element in the
Web Application. When the element is present,
the given path will be automatically included (as
in an include directive) at the beginning of each
JSP page in this jsp-property-group.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="include-coda"
type="javaee:pathType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
The include-coda element is a context-relative
path that must correspond to an element in the
Web Application. When the element is present,
the given path will be automatically included (as
in an include directive) at the end of each
JSP page in this jsp-property-group.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="deferred-syntax-allowed-as-literal"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The character sequence #{ is reserved for EL expressions.
Consequently, a translation error occurs if the #{
character sequence is used as a String literal, unless
this element is enabled (true). Disabled (false) by
default.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="trim-directive-whitespaces"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
Indicates that template text containing only whitespaces
must be removed from the response output. It has no
effect on JSP documents (XML syntax). Disabled (false)
by default.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="default-content-type"
type="javaee:string"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The valid values of default-content-type are those of the
contentType page directive. It specifies the default
response contentType if the page directive does not include
a contentType attribute.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="buffer"
type="javaee:string"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The valid values of buffer are those of the
buffer page directive. It specifies if buffering should be
used for the output to response, and if so, the size of the
buffer to use.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="error-on-undeclared-namespace"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The default behavior when a tag with unknown namespace is used
in a JSP page (regular syntax) is to silently ignore it. If
set to true, then an error must be raised during the translation
time when an undeclared tag is used in a JSP page. Disabled
(false) by default.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="taglibType">
<xsd:annotation>
<xsd:documentation>
The taglibType defines the syntax for declaring in
the deployment descriptor that a tag library is
available to the application. This can be done
to override implicit map entries from TLD files and
from the container.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:element name="taglib-uri"
type="javaee:string">
<xsd:annotation>
<xsd:documentation>
A taglib-uri element describes a URI identifying a
tag library used in the web application. The body
of the taglib-uri element may be either an
absolute URI specification, or a relative URI.
There should be no entries in web.xml with the
same taglib-uri value.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="taglib-location"
type="javaee:pathType">
<xsd:annotation>
<xsd:documentation>
the taglib-location element contains the location
(as a resource relative to the root of the web
application) where to find the Tag Library
Description file for the tag library.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
</xsd:schema>

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<?xml version="1.0" encoding="UTF-8"?>
<xsd:schema xmlns="http://www.w3.org/2001/XMLSchema"
targetNamespace="http://java.sun.com/xml/ns/javaee"
xmlns:javaee="http://java.sun.com/xml/ns/javaee"
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
elementFormDefault="qualified"
attributeFormDefault="unqualified"
version="3.0">
<xsd:annotation>
<xsd:documentation>
DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
Copyright 2003-2009 Sun Microsystems, Inc. All rights reserved.
The contents of this file are subject to the terms of either the
GNU General Public License Version 2 only ("GPL") or the Common
Development and Distribution License("CDDL") (collectively, the
"License"). You may not use this file except in compliance with
the License. You can obtain a copy of the License at
https://glassfish.dev.java.net/public/CDDL+GPL.html or
glassfish/bootstrap/legal/LICENSE.txt. See the License for the
specific language governing permissions and limitations under the
License.
When distributing the software, include this License Header
Notice in each file and include the License file at
glassfish/bootstrap/legal/LICENSE.txt. Sun designates this
particular file as subject to the "Classpath" exception as
provided by Sun in the GPL Version 2 section of the License file
that accompanied this code. If applicable, add the following
below the License Header, with the fields enclosed by brackets []
replaced by your own identifying information:
"Portions Copyrighted [year] [name of copyright owner]"
Contributor(s):
If you wish your version of this file to be governed by only the
CDDL or only the GPL Version 2, indicate your decision by adding
"[Contributor] elects to include this software in this
distribution under the [CDDL or GPL Version 2] license." If you
don't indicate a single choice of license, a recipient has the
option to distribute your version of this file under either the
CDDL, the GPL Version 2 or to extend the choice of license to its
licensees as provided above. However, if you add GPL Version 2
code and therefore, elected the GPL Version 2 license, then the
option applies only if the new code is made subject to such
option by the copyright holder.
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
<![CDATA[[
This is the XML Schema for the Servlet 3.0 deployment descriptor.
The deployment descriptor must be named "WEB-INF/web.xml" in the
web application's war file. All Servlet deployment descriptors
must indicate the web application schema by using the Java EE
namespace:
http://java.sun.com/xml/ns/javaee
and by indicating the version of the schema by
using the version element as shown below:
<web-app xmlns="http://java.sun.com/xml/ns/javaee"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="..."
version="3.0">
...
</web-app>
The instance documents may indicate the published version of
the schema using the xsi:schemaLocation attribute for Java EE
namespace with the following location:
http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd
]]>
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
The following conventions apply to all Java EE
deployment descriptor elements unless indicated otherwise.
- In elements that specify a pathname to a file within the
same JAR file, relative filenames (i.e., those not
starting with "/") are considered relative to the root of
the JAR file's namespace. Absolute filenames (i.e., those
starting with "/") also specify names in the root of the
JAR file's namespace. In general, relative names are
preferred. The exception is .war files where absolute
names are preferred for consistency with the Servlet API.
</xsd:documentation>
</xsd:annotation>
<xsd:include schemaLocation="web-common_3_0.xsd"/>
<!-- **************************************************** -->
<xsd:element name="web-app"
type="javaee:web-appType">
<xsd:annotation>
<xsd:documentation>
The web-app element is the root of the deployment
descriptor for a web application. Note that the sub-elements
of this element can be in the arbitrary order. Because of
that, the multiplicity of the elements of distributable,
session-config, welcome-file-list, jsp-config, login-config,
and locale-encoding-mapping-list was changed from "?" to "*"
in this schema. However, the deployment descriptor instance
file must not contain multiple elements of session-config,
jsp-config, and login-config. When there are multiple elements of
welcome-file-list or locale-encoding-mapping-list, the container
must concatenate the element contents. The multiple occurence
of the element distributable is redundant and the container
treats that case exactly in the same way when there is only
one distributable.
</xsd:documentation>
</xsd:annotation>
<xsd:unique name="web-common-servlet-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The servlet element contains the name of a servlet.
The name must be unique within the web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:servlet"/>
<xsd:field xpath="javaee:servlet-name"/>
</xsd:unique>
<xsd:unique name="web-common-filter-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The filter element contains the name of a filter.
The name must be unique within the web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:filter"/>
<xsd:field xpath="javaee:filter-name"/>
</xsd:unique>
<xsd:unique name="web-common-ejb-local-ref-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The ejb-local-ref-name element contains the name of an EJB
reference. The EJB reference is an entry in the web
application's environment and is relative to the
java:comp/env context. The name must be unique within
the web application.
It is recommended that name is prefixed with "ejb/".
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:ejb-local-ref"/>
<xsd:field xpath="javaee:ejb-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-ejb-ref-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The ejb-ref-name element contains the name of an EJB
reference. The EJB reference is an entry in the web
application's environment and is relative to the
java:comp/env context. The name must be unique within
the web application.
It is recommended that name is prefixed with "ejb/".
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:ejb-ref"/>
<xsd:field xpath="javaee:ejb-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-resource-env-ref-uniqueness">
<xsd:annotation>
<xsd:documentation>
The resource-env-ref-name element specifies the name of
a resource environment reference; its value is the
environment entry name used in the web application code.
The name is a JNDI name relative to the java:comp/env
context and must be unique within a web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:resource-env-ref"/>
<xsd:field xpath="javaee:resource-env-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-message-destination-ref-uniqueness">
<xsd:annotation>
<xsd:documentation>
The message-destination-ref-name element specifies the name of
a message destination reference; its value is the
environment entry name used in the web application code.
The name is a JNDI name relative to the java:comp/env
context and must be unique within a web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:message-destination-ref"/>
<xsd:field xpath="javaee:message-destination-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-res-ref-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The res-ref-name element specifies the name of a
resource manager connection factory reference. The name
is a JNDI name relative to the java:comp/env context.
The name must be unique within a web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:resource-ref"/>
<xsd:field xpath="javaee:res-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-env-entry-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The env-entry-name element contains the name of a web
application's environment entry. The name is a JNDI
name relative to the java:comp/env context. The name
must be unique within a web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:env-entry"/>
<xsd:field xpath="javaee:env-entry-name"/>
</xsd:unique>
<xsd:key name="web-common-role-name-key">
<xsd:annotation>
<xsd:documentation>
A role-name-key is specified to allow the references
from the security-role-refs.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:security-role"/>
<xsd:field xpath="javaee:role-name"/>
</xsd:key>
<xsd:keyref name="web-common-role-name-references"
refer="javaee:web-common-role-name-key">
<xsd:annotation>
<xsd:documentation>
The keyref indicates the references from
security-role-ref to a specified role-name.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:servlet/javaee:security-role-ref"/>
<xsd:field xpath="javaee:role-link"/>
</xsd:keyref>
</xsd:element>
</xsd:schema>

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<?xml version='1.0'?>
<?xml-stylesheet href="../2008/09/xsd.xsl" type="text/xsl"?>
<xs:schema targetNamespace="http://www.w3.org/XML/1998/namespace"
xmlns:xs="http://www.w3.org/2001/XMLSchema"
xmlns ="http://www.w3.org/1999/xhtml"
xml:lang="en">
<xs:annotation>
<xs:documentation>
<div>
<h1>About the XML namespace</h1>
<div class="bodytext">
<p>
This schema document describes the XML namespace, in a form
suitable for import by other schema documents.
</p>
<p>
See <a href="http://www.w3.org/XML/1998/namespace.html">
http://www.w3.org/XML/1998/namespace.html</a> and
<a href="http://www.w3.org/TR/REC-xml">
http://www.w3.org/TR/REC-xml</a> for information
about this namespace.
</p>
<p>
Note that local names in this namespace are intended to be
defined only by the World Wide Web Consortium or its subgroups.
The names currently defined in this namespace are listed below.
They should not be used with conflicting semantics by any Working
Group, specification, or document instance.
</p>
<p>
See further below in this document for more information about <a
href="#usage">how to refer to this schema document from your own
XSD schema documents</a> and about <a href="#nsversioning">the
namespace-versioning policy governing this schema document</a>.
</p>
</div>
</div>
</xs:documentation>
</xs:annotation>
<xs:attribute name="lang">
<xs:annotation>
<xs:documentation>
<div>
<h3>lang (as an attribute name)</h3>
<p>
denotes an attribute whose value
is a language code for the natural language of the content of
any element; its value is inherited. This name is reserved
by virtue of its definition in the XML specification.</p>
</div>
<div>
<h4>Notes</h4>
<p>
Attempting to install the relevant ISO 2- and 3-letter
codes as the enumerated possible values is probably never
going to be a realistic possibility.
</p>
<p>
See BCP 47 at <a href="http://www.rfc-editor.org/rfc/bcp/bcp47.txt">
http://www.rfc-editor.org/rfc/bcp/bcp47.txt</a>
and the IANA language subtag registry at
<a href="http://www.iana.org/assignments/language-subtag-registry">
http://www.iana.org/assignments/language-subtag-registry</a>
for further information.
</p>
<p>
The union allows for the 'un-declaration' of xml:lang with
the empty string.
</p>
</div>
</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:union memberTypes="xs:language">
<xs:simpleType>
<xs:restriction base="xs:string">
<xs:enumeration value=""/>
</xs:restriction>
</xs:simpleType>
</xs:union>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="space">
<xs:annotation>
<xs:documentation>
<div>
<h3>space (as an attribute name)</h3>
<p>
denotes an attribute whose
value is a keyword indicating what whitespace processing
discipline is intended for the content of the element; its
value is inherited. This name is reserved by virtue of its
definition in the XML specification.</p>
</div>
</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:NCName">
<xs:enumeration value="default"/>
<xs:enumeration value="preserve"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="base" type="xs:anyURI"> <xs:annotation>
<xs:documentation>
<div>
<h3>base (as an attribute name)</h3>
<p>
denotes an attribute whose value
provides a URI to be used as the base for interpreting any
relative URIs in the scope of the element on which it
appears; its value is inherited. This name is reserved
by virtue of its definition in the XML Base specification.</p>
<p>
See <a
href="http://www.w3.org/TR/xmlbase/">http://www.w3.org/TR/xmlbase/</a>
for information about this attribute.
</p>
</div>
</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attribute name="id" type="xs:ID">
<xs:annotation>
<xs:documentation>
<div>
<h3>id (as an attribute name)</h3>
<p>
denotes an attribute whose value
should be interpreted as if declared to be of type ID.
This name is reserved by virtue of its definition in the
xml:id specification.</p>
<p>
See <a
href="http://www.w3.org/TR/xml-id/">http://www.w3.org/TR/xml-id/</a>
for information about this attribute.
</p>
</div>
</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attributeGroup name="specialAttrs">
<xs:attribute ref="xml:base"/>
<xs:attribute ref="xml:lang"/>
<xs:attribute ref="xml:space"/>
<xs:attribute ref="xml:id"/>
</xs:attributeGroup>
<xs:annotation>
<xs:documentation>
<div>
<h3>Father (in any context at all)</h3>
<div class="bodytext">
<p>
denotes Jon Bosak, the chair of
the original XML Working Group. This name is reserved by
the following decision of the W3C XML Plenary and
XML Coordination groups:
</p>
<blockquote>
<p>
In appreciation for his vision, leadership and
dedication the W3C XML Plenary on this 10th day of
February, 2000, reserves for Jon Bosak in perpetuity
the XML name "xml:Father".
</p>
</blockquote>
</div>
</div>
</xs:documentation>
</xs:annotation>
<xs:annotation>
<xs:documentation>
<div xml:id="usage" id="usage">
<h2><a name="usage">About this schema document</a></h2>
<div class="bodytext">
<p>
This schema defines attributes and an attribute group suitable
for use by schemas wishing to allow <code>xml:base</code>,
<code>xml:lang</code>, <code>xml:space</code> or
<code>xml:id</code> attributes on elements they define.
</p>
<p>
To enable this, such a schema must import this schema for
the XML namespace, e.g. as follows:
</p>
<pre>
&lt;schema . . .>
. . .
&lt;import namespace="http://www.w3.org/XML/1998/namespace"
schemaLocation="http://www.w3.org/2001/xml.xsd"/>
</pre>
<p>
or
</p>
<pre>
&lt;import namespace="http://www.w3.org/XML/1998/namespace"
schemaLocation="http://www.w3.org/2009/01/xml.xsd"/>
</pre>
<p>
Subsequently, qualified reference to any of the attributes or the
group defined below will have the desired effect, e.g.
</p>
<pre>
&lt;type . . .>
. . .
&lt;attributeGroup ref="xml:specialAttrs"/>
</pre>
<p>
will define a type which will schema-validate an instance element
with any of those attributes.
</p>
</div>
</div>
</xs:documentation>
</xs:annotation>
<xs:annotation>
<xs:documentation>
<div id="nsversioning" xml:id="nsversioning">
<h2><a name="nsversioning">Versioning policy for this schema document</a></h2>
<div class="bodytext">
<p>
In keeping with the XML Schema WG's standard versioning
policy, this schema document will persist at
<a href="http://www.w3.org/2009/01/xml.xsd">
http://www.w3.org/2009/01/xml.xsd</a>.
</p>
<p>
At the date of issue it can also be found at
<a href="http://www.w3.org/2001/xml.xsd">
http://www.w3.org/2001/xml.xsd</a>.
</p>
<p>
The schema document at that URI may however change in the future,
in order to remain compatible with the latest version of XML
Schema itself, or with the XML namespace itself. In other words,
if the XML Schema or XML namespaces change, the version of this
document at <a href="http://www.w3.org/2001/xml.xsd">
http://www.w3.org/2001/xml.xsd
</a>
will change accordingly; the version at
<a href="http://www.w3.org/2009/01/xml.xsd">
http://www.w3.org/2009/01/xml.xsd
</a>
will not change.
</p>
<p>
Previous dated (and unchanging) versions of this schema
document are at:
</p>
<ul>
<li><a href="http://www.w3.org/2009/01/xml.xsd">
http://www.w3.org/2009/01/xml.xsd</a></li>
<li><a href="http://www.w3.org/2007/08/xml.xsd">
http://www.w3.org/2007/08/xml.xsd</a></li>
<li><a href="http://www.w3.org/2004/10/xml.xsd">
http://www.w3.org/2004/10/xml.xsd</a></li>
<li><a href="http://www.w3.org/2001/03/xml.xsd">
http://www.w3.org/2001/03/xml.xsd</a></li>
</ul>
</div>
</div>
</xs:documentation>
</xs:annotation>
</xs:schema>

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<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"
xmlns:p="http://www.springframework.org/schema/p" xmlns:tx="http://www.springframework.org/schema/tx" xmlns:task="http://www.springframework.org/schema/task" xmlns:util="http://www.springframework.org/schema/util"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.0.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx.xsd
http://www.springframework.org/schema/task http://www.springframework.org/schema/task/spring-task.xsd
http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-2.0.xsd
"
default-autowire="no" default-lazy-init="false">
<context:annotation-config />
<context:mbean-server />
<bean id="myPatientDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Patient"/>
</bean>
<bean id="myObservationDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Observation"/>
</bean>
<bean id="myOrganizationDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Organization"/>
</bean>
<bean id="myLocationDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Location"/>
</bean>
<bean id="myQuestionnaireDao" class="ca.uhn.fhir.jpa.dao.FhirResourceDao">
<property name="resourceType" value="ca.uhn.fhir.model.dstu.resource.Questionnaire"/>
</bean>
<bean id="myPersistenceDataSource" class="org.springframework.jdbc.datasource.DriverManagerDataSource" lazy-init="true">
<property name="url" value="jdbc:derby:memory:myUnitTestDB;create=true" />
<!-- <property name="url" value="jdbc:derby:directory:myUnitTestDB;create=true" /> -->
</bean>
<bean id="myEntityManagerFactory" class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
<property name="dataSource" ref="myPersistenceDataSource" />
<property name="persistenceXmlLocation" value="classpath:fhir_jpatest_persistence.xml" />
<property name="persistenceUnitName" value="FHIR_UT" />
<property name="jpaVendorAdapter">
<bean class="org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter">
<property name="showSql" value="false" />
<property name="generateDdl" value="true" />
<property name="databasePlatform" value="org.hibernate.dialect.DerbyTenSevenDialect" />
</bean>
</property>
</bean>
<bean id="myTxManager" class="org.springframework.orm.jpa.JpaTransactionManager">
<property name="entityManagerFactory" ref="myEntityManagerFactory" />
</bean>
<tx:annotation-driven transaction-manager="myTxManager" />
</beans>

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<?xml version="1.0" encoding="UTF-8"?>
<persistence xmlns="http://java.sun.com/xml/ns/persistence"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://java.sun.com/xml/ns/persistence http://java.sun.com/xml/ns/persistence/persistence_2_0.xsd"
version="2.0">
<persistence-unit name="FHIR_UT" transaction-type="RESOURCE_LOCAL">
<provider>org.hibernate.ejb.HibernatePersistence</provider>
<class>ca.uhn.test.jpasrv.PatientResourceTable</class>
<class>ca.uhn.fhir.jpa.entity.ResourceHistoryTable</class>
<class>ca.uhn.fhir.jpa.entity.ResourceHistoryTag</class>
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamDate</class>
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamNumber</class>
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamString</class>
<class>ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamToken</class>
<class>ca.uhn.fhir.jpa.entity.ResourceLink</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTable</class>
<class>ca.uhn.fhir.jpa.entity.ResourceTag</class>
<exclude-unlisted-classes>true</exclude-unlisted-classes>
<properties>
<property name="hibernate.connection.url" value="jdbc:hsqldb:mem:unit-testing-jpa" />
<property name="hibernate.connection.driver_class" value="org.hsqldb.jdbcDriver" />
<property name="hibernate.dialect" value="org.hibernate.dialect.DerbyTenSevenDialect" />
<property name="hibernate.hbm2ddl.auto" value="update" />
<property name="hibernate.connection.username" value="sa" />
<property name="hibernate.connection.password" value="" />
<property name="hibernate.jdbc.batch_size" value="0" />
<property name="hibernate.cache.use_minimal_puts" value="false" />
<property name="hibernate.show_sql" value="false" />
<property name="hibernate.cache.use_query_cache" value="false" />
<property name="hibernate.cache.use_second_level_cache" value="false" />
<property name="hibernate.cache.use_structured_entries" value="false" />
<!--
<property name="hibernate.cache.region.factory_class" value="org.hibernate.cache.ehcache.SingletonEhCacheRegionFactory" />
-->
</properties>
</persistence-unit>
</persistence>

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hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/logback.xml Normal file
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<configuration scan="true" scanPeriod="30 seconds">
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>INFO</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
</appender>
<root>
<appender-ref ref="STDOUT" />
</root>
</configuration>

64
hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example-a.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<p>Patient Donald DUCK @ Acme Healthcare, Inc. MR = 654321</p>
</div>
</text>
<identifier>
<use value="usual"/>
<label value="MRN"/>
<system value="urn:oid:0.1.2.3.4.5.6.7"/>
<value value="654321"/>
</identifier>
<name>
<use value="official"/>
<family value="Donald"/>
<given value="Duck"/>
</name>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
</gender>
<photo>
<contentType value="image/gif"/>
<data value="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"/>
</photo>
<contact>
<relationship>
<coding>
<system value="http://hl7.org/fhir/patient-contact-relationship"/>
<code value="owner"/>
</coding>
</relationship>
<organization>
<!-- Which organization to contact to reach this patient -->
<reference value="Organization/1"/>
<display value="Walt Disney Corporation"/>
</organization>
</contact>
<managingOrganization>
<reference value="Organization/1"/>
<display value="ACME Healthcare, Inc"/>
</managingOrganization>
<link>
<other>
<reference value="Patient/pat2"/>
</other>
<type value="seealso" />
</link>
<active value="true"/>
</Patient>

108
hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example-animal.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<table>
<tbody>
<tr>
<td>Id</td>
<td>Kenzi (Dog: Golden Retriever)</td>
</tr>
<tr>
<td>Owner</td>
<td>Peter Chalmers, 534 Erewhon, Pleasantville, Vic, 3999</td>
</tr>
<tr>
<td>Contacts</td>
<td>Work: (03) 5555 6473</td>
</tr>
<tr>
<td>Id</td>
<td>Dog Tag: 1234123 (Maroondah City Council)</td>
</tr>
</tbody>
</table>
</div>
</text>
<!-- Dog tag, under Maroondah City council -->
<identifier>
<label value="Dog Tag"/>
<system value="http://www.maroondah.vic.gov.au/AnimalRegFees.aspx"/>
<value value="1234123"/>
<period>
<start value="2010-05-31"/>
</period>
<assigner>
<display value="Maroondah City Council"/>
</assigner>
</identifier>
<!-- Dog's name: Kenzi -->
<name>
<use value="usual"/>
<given value="Kenzi"/>
</name>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="F"/>
</coding>
</gender>
<birthDate value="2010-03-23"/>
<contact>
<relationship>
<coding>
<system value="http://hl7.org/fhir/patient-contact-relationship"/>
<code value="owner"/>
</coding>
</relationship>
<name>
<family value="Chalmers"/>
<given value="Peter"/>
<given value="James"/>
</name>
<telecom>
<system value="phone"/>
<value value="(03) 5555 6473"/>
<use value="work"/>
</telecom>
</contact>
<animal>
<species>
<coding>
<system value="http://hl7.org/fhir/animal-species"/>
<code value="canislf"/>
<display value="Dog"/>
</coding>
</species>
<breed>
<coding>
<system value="http://snomed.info/sct"/>
<code value="58108001"/>
<display value="Golden retriever"/>
</coding>
<coding>
<system value="http://hl7.org/fhir/animal-breed"/>
<code value="gret"/>
<display value="Golden Retriever"/>
</coding>
</breed>
<genderStatus>
<coding>
<system value="http://hl7.org/fhir/animal-genderstatus"/>
<code value="neutered"/>
</coding>
</genderStatus>
</animal>
<managingOrganization>
<display value="Pete's Vetinary Services"/>
</managingOrganization>
<active value="true"/>
</Patient>

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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<p>Patient Donald D DUCK @ Acme Healthcare, Inc. MR = 123456</p>
</div>
</text>
<identifier>
<use value="usual"/>
<label value="MRN"/>
<system value="urn:oid:0.1.2.3.4.5.6.7"/>
<value value="123456"/>
</identifier>
<name>
<use value="official"/>
<family value="Donald"/>
<given value="Duck"/>
<given value="D"/>
</name>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
</gender>
<photo>
<contentType value="image/gif"/>
<data value="R0lGODlhEwARAPcAAAAAAAAA/+9aAO+1AP/WAP/eAP/eCP/eEP/eGP/nAP/nCP/nEP/nIf/nKf/nUv/nWv/vAP/vCP/vEP/vGP/vIf/vKf/vMf/vOf/vWv/vY//
va//vjP/3c//3lP/3nP//tf//vf////////////////////////////////////////////////////////////////////////////////////////////////
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////////////
/////////////////////////////////////////////////////////yH5BAEAAAEALAAAAAATABEAAAi+AAMIDDCgYMGBCBMSvMCQ4QCFCQcwDBGCA4cLDyE
GECDxAoAQHjxwyKhQAMeGIUOSJJjRpIAGDS5wCDly4AALFlYOgHlBwwOSNydM0AmzwYGjBi8IHWoTgQYORg8QIGDAwAKhESI8HIDgwQaRDI1WXXAhK9MBBzZ8/X
DxQoUFZC9IiCBh6wEHGz6IbNuwQoSpWxEgyLCXL8O/gAnylNlW6AUEBRIL7Og3KwQIiCXb9HsZQoIEUzUjNEiaNMKAAAA7"/>
</photo>
<managingOrganization>
<reference value="Organization/1"/>
<display value="ACME Healthcare, Inc"/>
</managingOrganization>
<link>
<other>
<reference value="Patient/pat1"/>
</other>
<type value="seealso" />
</link>
<active value="true"/>
</Patient>

53
hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example-dicom.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/fhir-all.xsd">
<extension url="http://nema.org/fhir/extensions#0010:1010">
<valueQuantity>
<value value="56"/>
<units value="Y"/>
</valueQuantity>
</extension>
<extension url="http://nema.org/fhir/extensions#0010:1020">
<valueQuantity>
<value value="1.83"/>
<units value="m"/>
</valueQuantity>
</extension>
<extension url="http://nema.org/fhir/extensions#0010:1030">
<valueQuantity>
<value value="72.58"/>
<units value="kg"/>
</valueQuantity>
</extension>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml"> Patient MINT_TEST, ID = MINT1234. Age = 56y, Size =
1.83m, Weight = 72.58kg </div>
</text>
<identifier>
<system value="http://nema.org/examples/patients"/>
<value value="MINT1234"/>
</identifier>
<name>
<family value="MINT_TEST"/>
</name>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
</coding>
<coding id="nemagender">
<system value="http://nema.org/examples/gender"/>
<code value="M"/>
</coding>
<!-- <primary value="nemagender" /> -->
</gender>
<managingOrganization>
<reference value="Organization/1"/>
</managingOrganization>
<active value="true"/>
</Patient>

89
hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example-f001-pieter.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<identifier>
<use value="usual"/>
<system value="urn:oid:2.16.840.1.113883.2.4.6.3"/>
<!-- BSN identification system -->
<value value="738472983"/>
</identifier>
<identifier>
<use value="usual"/>
<system value="urn:oid:2.16.840.1.113883.2.4.6.3"/>
<!-- BSN identification system -->
</identifier>
<name>
<use value="usual"/>
<family value="van de Heuvel"/>
<given value="Pieter"/>
<suffix value="MSc"/>
</name>
<telecom>
<system value="phone"/>
<value value="0648352638"/>
<use value="mobile"/>
</telecom>
<telecom>
<system value="email"/>
<value value="p.heuvel@gmail.com"/>
<use value="home"/>
</telecom>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
</gender>
<birthDate value="1944-11-17"/>
<deceasedBoolean value="false"/>
<address>
<use value="home"/>
<line value="Van Egmondkade 23"/>
<city value="Amsterdam"/>
<zip value="1024 RJ"/>
<country value="NLD"/> <!-- ISO 3166 Codes (Countries) -->
</address>
<maritalStatus>
<coding>
<system value="http://hl7.org/fhir/v3/MaritalStatus"/>
<code value="M"/>
<display value="Married"/>
</coding>
<text value="Getrouwd"/>
</maritalStatus>
<multipleBirthBoolean value="true"/>
<contact>
<relationship>
<coding>
<system value="http://hl7.org/fhir/patient-contact-relationship"/>
<code value="partner"/>
</coding>
</relationship>
<name>
<use value="usual"/>
<family value="Abels"/>
<given value="Sarah"/>
</name>
<telecom>
<system value="phone"/>
<value value="0690383372"/>
<use value="mobile"/>
</telecom>
</contact>
<communication>
<coding>
<system value="urn:ietf:bcp:47"/>
<!-- IETF language tag -->
<code value="nl"/>
<display value="Dutch"/>
</coding>
<text value="Nederlands"/>
</communication>
<managingOrganization>
<reference value="Organization/f001"/>
<display value="Burgers University Medical Centre"/>
</managingOrganization>
<active value="true"/>
</Patient>

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hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example-f201-roel.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<identifier>
<!--The identifier for the person as this patient (fictive)-->
<use value="official"/>
<label value="BSN"/>
<system value="urn:oid:2.16.840.1.113883.2.4.6.3"/>
<value value="123456789"/>
</identifier>
<!--Demographics-->
<identifier>
<!--The identifier for this individual-->
<use value="official"/>
<label value="BSN"/>
<system value="urn:oid:2.16.840.1.113883.2.4.6.3"/>
<value value="123456789"/>
</identifier>
<name>
<!--The name associated with the individual (fictive)-->
<use value="official"/>
<text value="Roel"/>
<family value="Bor"/>
<given value="Roelof Olaf"/>
<prefix value="Drs."/>
<suffix value="PDEng."/>
</name>
<telecom>
<!--The mobile contact detail for the individual-->
<system value="phone"/>
<value value="+31612345678"/>
<use value="mobile"/>
</telecom>
<telecom>
<!--The home contact detail for the individual-->
<system value="phone"/>
<value value="+31201234567"/>
<use value="home"/>
</telecom>
<gender>
<!--The gender for administrative purposes-->
<coding>
<system value="http://snomed.info/sct"/>
<code value="248153007"/>
<display value="Male"/>
</coding>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
</gender>
<birthDate value="1960-03-13"/>
<!--The date and time of birth for the individual -->
<deceasedBoolean value="false"/>
<!--Indicates that the individual is not deceased-->
<address><!--Home address for the individual-->
<use value="home"/>
<line value="Bos en Lommerplein 280"/>
<city value="Amsterdam"/>
<zip value="1055RW"/>
<country value="NLD"/><!--ISO 3166 3 letter code-->
</address>
<maritalStatus>
<!--Marital status of the person-->
<coding>
<system value="http://snomed.info/sct"/>
<code value="36629006"/>
<display value="Legally married"/>
</coding>
<coding>
<system value="http://hl7.org/fhir/v3/MaritalStatus"/>
<code value="M"/>
</coding>
</maritalStatus>
<multipleBirthBoolean value="false"/>
<photo>
<contentType value="image/jpeg" />
<url value="binary/@f006"/>
</photo>
<contact>
<!--Contact of the patient-->
<relationship>
<!--Indicates that the contact is the patient's wife-->
<coding>
<system value="http://snomed.info/sct"/>
<code value="127850001"/>
<display value="Wife"/>
</coding>
<coding>
<system value="http://hl7.org/fhir/patient-contact-relationship"/>
<code value="partner"/>
</coding>
</relationship>
<name>
<!--The name of the contact-->
<use value="usual"/>
<text value="Ariadne Bor-Jansma"/>
</name>
<telecom>
<!--The home contact detail-->
<system value="phone"/>
<value value="+31201234567"/>
<use value="home"/>
</telecom>
</contact>
<communication>
<coding>
<system value="urn:std:iso:639-1"/>
<code value="nl-NL"/>
<display value="Dutch"/>
</coding>
</communication>
<managingOrganization>
<reference value="Organization/f201"/>
<display value="AUMC"/>
</managingOrganization>
<!--Indicates that the patient is not part of a multiple birth -->
<active value="true"/>
</Patient>

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hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example-ihe-pcd.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<!-- PID|||AB60001^^^A^PI||BROOKS^ALBERT^^^^^L -->
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Albert Brooks, Id: AB60001</div>
</text>
<!-- MRN assigned by ACME healthcare on 6-May 2001 -->
<identifier>
<label value="Internal Identifier"/>
<value value="AB60001"/>
</identifier>
<!-- Peter James Chalmers, but called "Jim" -->
<name>
<family value="BROOKS"/>
<given value="ALBERT"/>
</name>
<active value="true"/>
</Patient>

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hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example-us-extensions.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<extension url="http://hl7.org/fhir/Profile/us-core#race">
<valueCodeableConcept>
<coding>
<system value="http://hl7.org/fhir/v3/Race" />
<code value="1096-7" />
</coding>
</valueCodeableConcept>
</extension>
<extension url="http://hl7.org/fhir/Profile/us-core#ethnicity">
<valueCodeableConcept>
<coding>
<system value="http://hl7.org/fhir/v3/Ethnicity" />
<code value="2162-6" />
</coding>
</valueCodeableConcept>
</extension>
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<table>
<tbody>
<tr>
<td>Name</td>
<td>Peter James <b>Chalmers</b> ("Jim")</td>
</tr>
<tr>
<td>Address</td>
<td>534 Erewhon, Pleasantville, Orange County, 3999</td>
</tr>
<tr>
<td>Contacts</td>
<td>Home: unknown. Work: (03) 5555 6473</td>
</tr>
<tr>
<td>Id</td>
<td>MRN: 12345 (Acme Healthcare)</td>
</tr>
</tbody>
</table>
</div>
</text>
<!-- Peter James Chalmers, but called "Jim" -->
<name>
<use value="official"/>
<family value="Chalmers"/>
<given value="Peter"/>
<given value="James"/>
</name>
<address>
<extension url="http://hl7.org/fhir/Profile/us-core#county">
<valueString value="Orange County" />
</extension>
<use value="home"/>
<line value="534 Erewhon St"/>
<city value="PleasantVille"/>
<state value="Vic"/>
<zip value="3999"/>
</address>
<active value="true"/>
</Patient>

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hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example-xcda.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<p>Henry Levin the 7th</p>
</div>
</text>
<identifier>
<use value="usual"/>
<label value="MRN"/>
<system value="urn:oid:2.16.840.1.113883.19.5"/>
<value value="12345"/>
</identifier>
<name>
<family value="Levin"/>
<given value="Henry"/>
</name>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
</coding>
</gender>
<birthDate value="1932-09-24"/>
<managingOrganization>
<reference value="Organization/2.16.840.1.113883.19.5"/>
<display value="Good Health Clinic"/>
</managingOrganization>
<active value="true"/>
</Patient>

38
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<p>Patient John Doe, M, 27-May 1956. ID: 89765a87b</p>
</div>
</text>
<identifier>
<use value="usual"/>
<label value="MRN"/>
<system value="urn:oid:1.2.3.4.5"/>
<value value="89765a87b"/>
</identifier>
<name>
<family value="Doe"/>
<given value="John"/>
</name>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
</coding>
</gender>
<birthDate value="1956-05-27"/>
<address>
<line value="100 Main St"/>
<city value="Metropolis"/>
<state value="Il"/>
<zip value="44130"/>
<country value="USA"/>
</address>
<managingOrganization>
<reference value="Organization/2"/>
</managingOrganization>
<active value="true"/>
</Patient>

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hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/patient-example.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Patient xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/patient.xsd">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<table>
<tbody>
<tr>
<td>Name</td>
<td>Peter James <b>Chalmers</b> ("Jim")</td>
</tr>
<tr>
<td>Address</td>
<td>534 Erewhon, Pleasantville, Vic, 3999</td>
</tr>
<tr>
<td>Contacts</td>
<td>Home: unknown. Work: (03) 5555 6473</td>
</tr>
<tr>
<td>Id</td>
<td>MRN: 12345 (Acme Healthcare)</td>
</tr>
</tbody>
</table>
</div>
</text>
<!-- MRN assigned by ACME healthcare on 6-May 2001 -->
<identifier>
<use value="usual"/>
<label value="MRN"/>
<system value="urn:oid:1.2.36.146.595.217.0.1"/>
<value value="12345"/>
<period>
<start value="2001-05-06"/>
</period>
<assigner>
<display value="Acme Healthcare"/>
</assigner>
</identifier>
<!-- Peter James Chalmers, but called "Jim" -->
<name>
<use value="official"/>
<family value="Chalmers"/>
<given value="Peter"/>
<given value="James"/>
</name>
<name>
<use value="usual"/>
<given value="Jim"/>
</name>
<telecom>
<use value="home"/>
<!-- home communication details aren't known -->
</telecom>
<telecom>
<system value="phone"/>
<value value="(03) 5555 6473"/>
<use value="work"/>
</telecom>
<!-- use FHIR code system for male / female -->
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
<display value="Male"/>
</coding>
</gender>
<birthDate value="1974-12-25"/>
<deceasedBoolean value="false"/>
<address>
<use value="home"/>
<line value="534 Erewhon St"/>
<city value="PleasantVille"/>
<state value="Vic"/>
<zip value="3999"/>
</address>
<contact>
<relationship>
<coding>
<system value="http://hl7.org/fhir/patient-contact-relationship"/>
<code value="partner"/>
</coding>
</relationship>
<name>
<family value="du">
<!-- the "du" part is a family name prefix (VV in iso 21090) -->
<extension url="http://hl7.org/fhir/Profile/iso-21090#qualifier">
<valueCode value="VV"/>
</extension>
</family>
<family value="Marché"/>
<given value="Bénédicte"/>
</name>
<telecom>
<system value="phone"/>
<value value="+33 (237) 998327"/>
</telecom>
</contact>
<managingOrganization>
<reference value="Organization/1"/>
</managingOrganization>
<active value="true"/>
</Patient>

95
hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/questionnaire-example-bluebook.xml Normal file
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<Questionnaire xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/questionnaire.xsd">
<!-- Please not that in this questionnaire, the questions are mostly unnamed, that is, the questions are not identified using the <name> element. It will therefore
be hard to extract useful information in an automated way from this questionnaire. This is, however, quite often the case when modelling existing questionnaires -->
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<pre>
Cathy Jones, female. Birth weight 3.25 kg at 44.3 cm.
Injection of Vitamin K given on 1972-11-30 (first dose) and 1972-12-11 (second dose)
Note: Was able to speak Chinese at birth.
</pre>
</div>
</text>
<status value="completed"/>
<authored value="2013-02-19T14:15:00"/>
<subject>
<reference value="http://www.hl7.org/fhir/Patient/1"/>
</subject>
<author>
<reference value="http://www.hl7.org/fhir/Practitioner/1"/>
</author>
<group>
<name>
<text value="NSW Government My Personal Health Record, january 2013"/>
</name>
<!-- Many groups left out of this example -->
<group>
<name>
<coding>
<code value="6.1"/>
</coding>
<text value="Birth details"/>
</name>
<header value="Birth details - To be completed by health professional"/>
<group>
<question>
<text value="Name of child" />
<answerString value="Cathy Jones" />
</question>
<question>
<text value="Sex" />
<choice>
<code value="f" />
</choice>
</question>
</group>
<group>
<header value="Neonatal Information"/>
<question>
<text value="Birth weight (kg)"/>
<answerDecimal value="3.25"/>
</question>
<question>
<text value="Birth length (cm)"/>
<answerDecimal value="44.3"/>
</question>
<question>
<text value="Vitamin K given"/>
<choice>
<code value="INJECTION"/>
</choice>
<group>
<extension url="http://example.org/Profile/questionnaire#visibilityCondition">
<!-- note: this syntax is for demonstration purposes only, will need to be finalized during DSTU -->
<valueString value="HAS_VALUE(../choice/code) AND NEQ(../choice/code,'NO')"/>
</extension>
<question>
<text value="1st dose"/>
<answerDate value="1972-11-30"/>
</question>
<question>
<text value="2nd dose"/>
<answerDate value="1972-12-11"/>
</question>
</group>
</question>
<question>
<text value="Hep B given y / n"/>
<answerBoolean value="true"/>
<group>
<question>
<text value="Date given"/>
<answerDate value="1972-12-04"/>
</question>
</group>
</question>
<question>
<text value="Abnormalities noted at birth"/>
<answerString value="Already able to speak Chinese"/>
</question>
</group>
</group>
</group>
</Questionnaire>

78
hapi-fhir-jpaserver-uhnfhirtest/src/test/resources/resources/questionnaire-example-f201-lifelines.xml Normal file
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<?xml version="1.0" encoding="UTF-8"?>
<Questionnaire xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/questionnaire.xsd">
<status value="completed"/>
<authored value="2013-06-18T00:00:00+01:00"/>
<!--Fictive, only the below answers are non-fictive-->
<subject>
<reference value="Patient/f201"/>
<display value="Roel"/>
</subject>
<author>
<reference value="Practitioner/f201"/>
</author>
<source>
<reference value="Practitioner/f201"/>
</source>
<name>
<coding>
<system value="https://lifelines.nl"/>
<code value="VL 1-1, 18-65_1.2.2"/>
<display value="Lifelines Questionnaire 1 part 1"/>
</coding>
</name>
<identifier>
<use value="temp"/>
<label value="Roel's VL 1-1, 18-65_1.2.2"/>
</identifier>
<group>
<group>
<question>
<!--Seperate answer-->
<text value="Do you have allergies?"/>
<answerString value="I am allergic to house dust"/>
</question>
</group>
<group>
<!--Answers to general questions-->
<header value="General questions"/>
<question>
<text value="What is your gender?"/>
<answerString value="Male"/>
</question>
<question>
<name>
<text value="What is your date of birth?"/>
</name>
<answerDate value="1960-03-13"/>
</question>
<question>
<name>
<text value="What is your country of birth?"/>
</name>
<answerString value="The Netherlands"/>
</question>
<question>
<name>
<text value="What is your marital status?"/>
</name>
<answerString value="married"/>
</question>
</group>
<group>
<!--Answers to intoxications-->
<header value="Intoxications"/>
<question>
<text value="Do you smoke?"/>
<answerString value="No"/>
</question>
<question>
<text value="Do you drink alchohol?"/>
<answerString value="No, but I used to drink"/>
</question>
</group>
</group>
</Questionnaire>

200
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@ -0,0 +1,200 @@
<Questionnaire xmlns="http://hl7.org/fhir" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://hl7.org/fhir ../../schema/questionnaire.xsd">
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">
<pre>
Comorbidity? YES
Cardial Comorbidity? YES
Angina? YES
MI? NO
Vascular Comorbidity?
(no answers)
...
Histopathology
Abdominal
pT category: 1a
...
</pre>
</div>
</text>
<contained>
<Patient id="patsub">
<identifier>
<system value="http://cancer.questionnaire.org/systems/id/patientnr"/>
<value value="A34442332"/>
</identifier>
<identifier>
<label value="Dutch BSN"/>
<system value="urn:oid:2.16.840.1.113883.2.4.6.3"/>
<value value="188912345"/>
</identifier>
<gender>
<coding>
<system value="http://hl7.org/fhir/v3/AdministrativeGender"/>
<code value="M"/>
</coding>
</gender>
<birthDate value="1972-11-30"/>
</Patient>
</contained>
<contained>
<Practitioner id="questauth">
<identifier>
<label value="AUMC, Den Helder"/>
<system value="http://cancer.questionnaire.org/systems/id/org"/>
<value value="AUMC"/>
</identifier>
</Practitioner>
</contained>
<contained>
<Observation id="obs.pt-category">
<name>
<coding>
<system value="http://snomed.info/sct"/>
<code value="53786006"/>
<display value="pT1 category"/>
</coding>
</name>
<valueCodeableConcept>
<coding>
<system value="http://snomed.info/sct"/>
<code value="443357004" />
<display value="pT1a category" />
</coding>
</valueCodeableConcept>
<status value="final"/>
<reliability value="unknown"/>
</Observation>
</contained>
<status value="completed"/>
<authored value="2013-02-19T14:15:00"/>
<subject>
<reference value="#patsub"/>
</subject>
<author>
<reference value="#questauth"/>
</author>
<name>
<text value="Cancer Quality Forum Questionnaire 2012"/>
</name>
<group>
<group>
<!-- COMORBIDITY -->
<!-- First main section of the form, questions about comorbidity -->
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/sections"/>
<code value="COMORBIDITY"/>
</coding>
</name>
<!-- section contains one question: whether there is comorbidity -->
<question>
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/questions"/>
<code value="COMORB"/>
</coding>
</name>
<choice>
<system value="http://cancer.questionnaire.org/system/code/yesno"/>
<code value="1"/>
<display value="Yes"/>
</choice>
<group>
<!-- COMORBIDITY/CARDIAL -->
<!-- Subsection about specific comorbidity: cardial -->
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/sections"/>
<code value="CARDIAL"/>
</coding>
</name>
<question>
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/questions"/>
<code value="COMORBCAR"/>
</coding>
</name>
<choice>
<system value="http://cancer.questionnaire.org/system/code/yesno"/>
<code value="1"/>
</choice>
</question>
<question>
<!-- This answer carries both the questionnaire-specific name and an equivalent SNOMED CT code -->
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/questions"/>
<code value="COMCAR00"/>
<display value="Angina Pectoris"/>
</coding>
<coding>
<system value="http://snomed.info/sct"/>
<code value="194828000"/>
<display value="Angina (disorder)"/>
</coding>
</name>
<choice>
<system value="http://cancer.questionnaire.org/system/code/yesno"/>
<code value="1"/>
</choice>
</question>
<question>
<name>
<coding>
<system value="http://snomed.info/sct"/>
<code value="22298006"/>
<display value="Myocardial infarction (disorder)"/>
</coding>
</name>
<choice>
<system value="http://cancer.questionnaire.org/system/code/yesno"/>
<code value="0"/>
</choice>
</question>
</group>
<group>
<!-- COMORBIDITY/VASCULAR -->
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/sections"/>
<code value="VASCULAR"/>
</coding>
</name>
</group>
</question>
</group>
<group>
<!-- HISTOPATHOLOGY -->
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/sections"/>
<code value="HISTOPATHOLOGY"/>
</coding>
</name>
<group>
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/sections"/>
<code value="ABDOMINAL"/>
</coding>
</name>
<question>
<name>
<coding>
<system value="http://cancer.questionnaire.org/system/code/questions"/>
<code value="STADPT"/>
<display value="pT category"/>
</coding>
</name>
<dataResource>
<reference value="#obs.pt-category"/>
</dataResource>
</question>
</group>
</group>
</group>
</Questionnaire>

4
hapi-tinder-plugin/src/main/resources/vm/jpa_resource_provider.vm
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@ -5,7 +5,7 @@ import java.util.*;
import org.apache.commons.lang3.StringUtils;
import ca.uhn.fhir.jpa.provider.BaseJpaResourceProvider;
import ca.uhn.fhir.jpa.provider.JpaResourceProvider;
import ca.uhn.fhir.jpa.dao.SearchParameterMap;
import ca.uhn.fhir.model.api.*;
import ca.uhn.fhir.model.api.annotation.*;
@ -15,7 +15,7 @@ import ca.uhn.fhir.rest.annotation.*;
import ca.uhn.fhir.rest.param.*;
public class ${className}ResourceProvider extends BaseJpaResourceProvider<${className}> {
public class ${className}ResourceProvider extends JpaResourceProvider<${className}> {
@Override
public Class<? extends IResource> getResourceType() {