3770 fix batch2 failure loop (#3779)
* 3770 fixing error handling * some updates to error handling * changelog * blah * bumping version * fix test failures * code review points * review points * add retry test * assert counts in the test * test fixes Co-authored-by: leif stawnyczy <leifstawnyczy@leifs-MacBook-Pro.local> Co-authored-by: Ken Stevens <ken@smilecdr.com>
This commit is contained in:
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<artifactId>hapi-fhir</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<modelVersion>4.0.0</modelVersion>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-bom</artifactId>
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<artifactId>hapi-fhir-bom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<packaging>pom</packaging>
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<packaging>pom</packaging>
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<name>HAPI FHIR BOM</name>
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<name>HAPI FHIR BOM</name>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<artifactId>hapi-fhir</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir-cli</artifactId>
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<artifactId>hapi-fhir-cli</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../../hapi-deployable-pom</relativePath>
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<relativePath>../../hapi-deployable-pom</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<artifactId>hapi-fhir</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-fhir</artifactId>
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<artifactId>hapi-fhir</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../pom.xml</relativePath>
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<relativePath>../pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -0,0 +1,6 @@
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---
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type: fix
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issue: 3770
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title: "Batch2 will have a standard error handling that will fail the job if it fails
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a chunk processing for more than 3 times.
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Further, added better validation to reindex job to disallow bad urls."
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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<modelVersion>4.0.0</modelVersion>
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<modelVersion>4.0.0</modelVersion>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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</parent>
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@ -24,6 +24,7 @@ import ca.uhn.fhir.batch2.api.IJobPersistence;
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import ca.uhn.fhir.batch2.api.JobOperationResultJson;
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import ca.uhn.fhir.batch2.api.JobOperationResultJson;
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import ca.uhn.fhir.batch2.coordinator.BatchWorkChunk;
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import ca.uhn.fhir.batch2.coordinator.BatchWorkChunk;
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import ca.uhn.fhir.batch2.model.JobInstance;
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import ca.uhn.fhir.batch2.model.JobInstance;
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import ca.uhn.fhir.batch2.model.MarkWorkChunkAsErrorRequest;
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import ca.uhn.fhir.batch2.model.StatusEnum;
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import ca.uhn.fhir.batch2.model.StatusEnum;
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import ca.uhn.fhir.batch2.model.WorkChunk;
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import ca.uhn.fhir.batch2.model.WorkChunk;
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import ca.uhn.fhir.jpa.dao.data.IBatch2JobInstanceRepository;
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import ca.uhn.fhir.jpa.dao.data.IBatch2JobInstanceRepository;
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@ -198,6 +199,14 @@ public class JpaJobPersistenceImpl implements IJobPersistence {
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myWorkChunkRepository.updateChunkStatusAndIncrementErrorCountForEndError(theChunkId, new Date(), theErrorMessage, StatusEnum.ERRORED);
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myWorkChunkRepository.updateChunkStatusAndIncrementErrorCountForEndError(theChunkId, new Date(), theErrorMessage, StatusEnum.ERRORED);
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}
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}
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@Override
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public Optional<WorkChunk> markWorkChunkAsErroredAndIncrementErrorCount(MarkWorkChunkAsErrorRequest theParameters) {
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markWorkChunkAsErroredAndIncrementErrorCount(theParameters.getChunkId(), theParameters.getErrorMsg());
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Optional<Batch2WorkChunkEntity> op = myWorkChunkRepository.findById(theParameters.getChunkId());
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return op.map(c -> toChunk(c, theParameters.isIncludeData()));
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}
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@Override
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@Override
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public void markWorkChunkAsFailed(String theChunkId, String theErrorMessage) {
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public void markWorkChunkAsFailed(String theChunkId, String theErrorMessage) {
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myWorkChunkRepository.updateChunkStatusAndIncrementErrorCountForEndError(theChunkId, new Date(), theErrorMessage, StatusEnum.FAILED);
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myWorkChunkRepository.updateChunkStatusAndIncrementErrorCountForEndError(theChunkId, new Date(), theErrorMessage, StatusEnum.FAILED);
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@InjectMocks
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@InjectMocks
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JpaJobPersistenceImpl mySvc;
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JpaJobPersistenceImpl mySvc;
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@Test
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@Test
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void cancelSuccess() {
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void cancelSuccess() {
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// setup
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// setup
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<parent>
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<parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<groupId>ca.uhn.hapi.fhir</groupId>
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<artifactId>hapi-deployable-pom</artifactId>
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<artifactId>hapi-deployable-pom</artifactId>
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<version>6.1.0-PRE13-SNAPSHOT</version>
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<version>6.1.0-PRE14-SNAPSHOT</version>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
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</parent>
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<parent>
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||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -6,7 +6,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -28,6 +28,9 @@ import org.awaitility.core.ConditionTimeoutException;
|
||||||
import org.hamcrest.Matchers;
|
import org.hamcrest.Matchers;
|
||||||
import org.springframework.beans.factory.annotation.Autowired;
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
|
|
||||||
|
import java.time.Duration;
|
||||||
|
import java.util.concurrent.TimeUnit;
|
||||||
|
|
||||||
import java.util.Collection;
|
import java.util.Collection;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
|
||||||
|
@ -71,6 +74,17 @@ public class Batch2JobHelper {
|
||||||
}, equalTo(StatusEnum.CANCELLED));
|
}, equalTo(StatusEnum.CANCELLED));
|
||||||
}
|
}
|
||||||
|
|
||||||
|
public JobInstance awaitJobHitsStatusInTime(String theId, int theSeconds, StatusEnum... theStatuses) {
|
||||||
|
await().atMost(theSeconds, TimeUnit.SECONDS)
|
||||||
|
.pollDelay(Duration.ofSeconds(10))
|
||||||
|
.until(() -> {
|
||||||
|
myJobMaintenanceService.runMaintenancePass();
|
||||||
|
return myJobCoordinator.getInstance(theId).getStatus();
|
||||||
|
}, Matchers.in(theStatuses));
|
||||||
|
|
||||||
|
return myJobCoordinator.getInstance(theId);
|
||||||
|
}
|
||||||
|
|
||||||
public void awaitJobInProgress(String theId) {
|
public void awaitJobInProgress(String theId) {
|
||||||
await().until(() -> {
|
await().until(() -> {
|
||||||
myJobMaintenanceService.runMaintenancePass();
|
myJobMaintenanceService.runMaintenancePass();
|
||||||
|
|
|
@ -7,6 +7,7 @@ import ca.uhn.fhir.batch2.api.IJobDataSink;
|
||||||
import ca.uhn.fhir.batch2.api.IJobMaintenanceService;
|
import ca.uhn.fhir.batch2.api.IJobMaintenanceService;
|
||||||
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
||||||
import ca.uhn.fhir.batch2.api.IJobStepWorker;
|
import ca.uhn.fhir.batch2.api.IJobStepWorker;
|
||||||
|
import ca.uhn.fhir.batch2.api.ILastJobStepWorker;
|
||||||
import ca.uhn.fhir.batch2.api.IReductionStepWorker;
|
import ca.uhn.fhir.batch2.api.IReductionStepWorker;
|
||||||
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
|
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
|
||||||
import ca.uhn.fhir.batch2.api.RunOutcome;
|
import ca.uhn.fhir.batch2.api.RunOutcome;
|
||||||
|
@ -17,6 +18,11 @@ import ca.uhn.fhir.batch2.model.ChunkOutcome;
|
||||||
import ca.uhn.fhir.batch2.model.JobDefinition;
|
import ca.uhn.fhir.batch2.model.JobDefinition;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstanceStartRequest;
|
import ca.uhn.fhir.batch2.model.JobInstanceStartRequest;
|
||||||
|
import ca.uhn.fhir.batch2.model.JobWorkNotificationJsonMessage;
|
||||||
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
|
import ca.uhn.fhir.jpa.subscription.channel.api.ChannelConsumerSettings;
|
||||||
|
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelFactory;
|
||||||
|
import ca.uhn.fhir.jpa.subscription.channel.impl.LinkedBlockingChannel;
|
||||||
import ca.uhn.fhir.jpa.test.BaseJpaR4Test;
|
import ca.uhn.fhir.jpa.test.BaseJpaR4Test;
|
||||||
import ca.uhn.fhir.jpa.test.Batch2JobHelper;
|
import ca.uhn.fhir.jpa.test.Batch2JobHelper;
|
||||||
import ca.uhn.fhir.model.api.IModelJson;
|
import ca.uhn.fhir.model.api.IModelJson;
|
||||||
|
@ -24,11 +30,16 @@ import ca.uhn.fhir.util.JsonUtil;
|
||||||
import ca.uhn.test.concurrency.LatchTimedOutError;
|
import ca.uhn.test.concurrency.LatchTimedOutError;
|
||||||
import ca.uhn.test.concurrency.PointcutLatch;
|
import ca.uhn.test.concurrency.PointcutLatch;
|
||||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||||
|
import org.junit.jupiter.api.AfterEach;
|
||||||
import org.junit.jupiter.api.BeforeEach;
|
import org.junit.jupiter.api.BeforeEach;
|
||||||
import org.junit.jupiter.api.Test;
|
import org.junit.jupiter.api.Test;
|
||||||
import org.slf4j.Logger;
|
import org.slf4j.Logger;
|
||||||
import org.slf4j.LoggerFactory;
|
import org.slf4j.LoggerFactory;
|
||||||
import org.springframework.beans.factory.annotation.Autowired;
|
import org.springframework.beans.factory.annotation.Autowired;
|
||||||
|
import org.springframework.messaging.Message;
|
||||||
|
import org.springframework.messaging.MessageChannel;
|
||||||
|
import org.springframework.messaging.MessageHandler;
|
||||||
|
import org.springframework.messaging.support.ExecutorChannelInterceptor;
|
||||||
|
|
||||||
import javax.annotation.Nonnull;
|
import javax.annotation.Nonnull;
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
|
@ -39,6 +50,8 @@ import java.util.concurrent.ExecutorService;
|
||||||
import java.util.concurrent.Executors;
|
import java.util.concurrent.Executors;
|
||||||
import java.util.concurrent.atomic.AtomicInteger;
|
import java.util.concurrent.atomic.AtomicInteger;
|
||||||
|
|
||||||
|
import static ca.uhn.fhir.batch2.config.BaseBatch2Config.CHANNEL_NAME;
|
||||||
|
import static ca.uhn.fhir.batch2.coordinator.StepExecutionSvc.MAX_CHUNK_ERROR_COUNT;
|
||||||
import static org.junit.jupiter.api.Assertions.assertEquals;
|
import static org.junit.jupiter.api.Assertions.assertEquals;
|
||||||
import static org.junit.jupiter.api.Assertions.assertNotNull;
|
import static org.junit.jupiter.api.Assertions.assertNotNull;
|
||||||
import static org.junit.jupiter.api.Assertions.assertTrue;
|
import static org.junit.jupiter.api.Assertions.assertTrue;
|
||||||
|
@ -58,6 +71,8 @@ public class Batch2CoordinatorIT extends BaseJpaR4Test {
|
||||||
IJobMaintenanceService myJobMaintenanceService;
|
IJobMaintenanceService myJobMaintenanceService;
|
||||||
@Autowired
|
@Autowired
|
||||||
Batch2JobHelper myBatch2JobHelper;
|
Batch2JobHelper myBatch2JobHelper;
|
||||||
|
@Autowired
|
||||||
|
private IChannelFactory myChannelFactory;
|
||||||
|
|
||||||
@Autowired
|
@Autowired
|
||||||
IJobPersistence myJobPersistence;
|
IJobPersistence myJobPersistence;
|
||||||
|
@ -65,6 +80,7 @@ public class Batch2CoordinatorIT extends BaseJpaR4Test {
|
||||||
private final PointcutLatch myFirstStepLatch = new PointcutLatch("First Step");
|
private final PointcutLatch myFirstStepLatch = new PointcutLatch("First Step");
|
||||||
private final PointcutLatch myLastStepLatch = new PointcutLatch("Last Step");
|
private final PointcutLatch myLastStepLatch = new PointcutLatch("Last Step");
|
||||||
private IJobCompletionHandler<TestJobParameters> myCompletionHandler;
|
private IJobCompletionHandler<TestJobParameters> myCompletionHandler;
|
||||||
|
private LinkedBlockingChannel myWorkChannel;
|
||||||
|
|
||||||
private static RunOutcome callLatch(PointcutLatch theLatch, StepExecutionDetails<?, ?> theStep) {
|
private static RunOutcome callLatch(PointcutLatch theLatch, StepExecutionDetails<?, ?> theStep) {
|
||||||
theLatch.call(theStep);
|
theLatch.call(theStep);
|
||||||
|
@ -74,6 +90,12 @@ public class Batch2CoordinatorIT extends BaseJpaR4Test {
|
||||||
@BeforeEach
|
@BeforeEach
|
||||||
public void before() {
|
public void before() {
|
||||||
myCompletionHandler = details -> {};
|
myCompletionHandler = details -> {};
|
||||||
|
myWorkChannel = (LinkedBlockingChannel) myChannelFactory.getOrCreateReceiver(CHANNEL_NAME, JobWorkNotificationJsonMessage.class, new ChannelConsumerSettings());
|
||||||
|
}
|
||||||
|
|
||||||
|
@AfterEach
|
||||||
|
public void after() {
|
||||||
|
myWorkChannel.clearInterceptorsForUnitTest();
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
|
@ -123,7 +145,6 @@ public class Batch2CoordinatorIT extends BaseJpaR4Test {
|
||||||
myLastStepLatch.awaitExpected();
|
myLastStepLatch.awaitExpected();
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
public void testFastTrack_Maintenance_do_not_both_call_CompletionHandler() throws InterruptedException {
|
public void testFastTrack_Maintenance_do_not_both_call_CompletionHandler() throws InterruptedException {
|
||||||
IJobStepWorker<TestJobParameters, VoidModel, FirstStepOutput> firstStep = (step, sink) -> {
|
IJobStepWorker<TestJobParameters, VoidModel, FirstStepOutput> firstStep = (step, sink) -> {
|
||||||
|
@ -189,7 +210,6 @@ public class Batch2CoordinatorIT extends BaseJpaR4Test {
|
||||||
myLastStepLatch.awaitExpected();
|
myLastStepLatch.awaitExpected();
|
||||||
}
|
}
|
||||||
|
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
public void testJobDefinitionWithReductionStepIT() throws InterruptedException {
|
public void testJobDefinitionWithReductionStepIT() throws InterruptedException {
|
||||||
// setup
|
// setup
|
||||||
|
@ -371,6 +391,69 @@ public class Batch2CoordinatorIT extends BaseJpaR4Test {
|
||||||
myBatch2JobHelper.awaitJobCancelled(instanceId);
|
myBatch2JobHelper.awaitJobCancelled(instanceId);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void testStepRunFailure_continuouslyThrows_marksJobFailed() {
|
||||||
|
AtomicInteger interceptorCounter = new AtomicInteger();
|
||||||
|
myWorkChannel.addInterceptor(new ExecutorChannelInterceptor() {
|
||||||
|
@Override
|
||||||
|
public void afterMessageHandled(Message<?> message, MessageChannel channel, MessageHandler handler, Exception ex) {
|
||||||
|
if (ex != null) {
|
||||||
|
interceptorCounter.incrementAndGet();
|
||||||
|
ourLog.info("Work Channel Exception thrown: {}. Resending message", ex.getMessage());
|
||||||
|
channel.send(message);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
});
|
||||||
|
|
||||||
|
// setup
|
||||||
|
AtomicInteger counter = new AtomicInteger();
|
||||||
|
// step 1
|
||||||
|
IJobStepWorker<TestJobParameters, VoidModel, FirstStepOutput> first = (step, sink) -> {
|
||||||
|
counter.getAndIncrement();
|
||||||
|
throw new RuntimeException("Exception");
|
||||||
|
};
|
||||||
|
// final step
|
||||||
|
ILastJobStepWorker<TestJobParameters, FirstStepOutput> last = (step, sink) -> {
|
||||||
|
fail("We should never hit this last step");
|
||||||
|
return RunOutcome.SUCCESS;
|
||||||
|
};
|
||||||
|
// job definition
|
||||||
|
String jobId = new Exception().getStackTrace()[0].getMethodName();
|
||||||
|
JobDefinition<? extends IModelJson> jd = JobDefinition.newBuilder()
|
||||||
|
.setJobDefinitionId(jobId)
|
||||||
|
.setJobDescription("test job")
|
||||||
|
.setJobDefinitionVersion(TEST_JOB_VERSION)
|
||||||
|
.setParametersType(TestJobParameters.class)
|
||||||
|
.gatedExecution()
|
||||||
|
.addFirstStep(
|
||||||
|
FIRST_STEP_ID,
|
||||||
|
"Test first step",
|
||||||
|
FirstStepOutput.class,
|
||||||
|
first
|
||||||
|
)
|
||||||
|
.addLastStep(
|
||||||
|
LAST_STEP_ID,
|
||||||
|
"Test last step",
|
||||||
|
last
|
||||||
|
)
|
||||||
|
.build();
|
||||||
|
myJobDefinitionRegistry.addJobDefinition(jd);
|
||||||
|
// test
|
||||||
|
JobInstanceStartRequest request = buildRequest(jobId);
|
||||||
|
myFirstStepLatch.setExpectedCount(1);
|
||||||
|
String instanceId = myJobCoordinator.startInstance(request);
|
||||||
|
JobInstance instance = myBatch2JobHelper.awaitJobHitsStatusInTime(instanceId,
|
||||||
|
12, // we want to wait a long time (2 min here) cause backoff is incremental
|
||||||
|
StatusEnum.FAILED, StatusEnum.ERRORED // error states
|
||||||
|
);
|
||||||
|
|
||||||
|
assertEquals(MAX_CHUNK_ERROR_COUNT + 1, counter.get());
|
||||||
|
assertEquals(MAX_CHUNK_ERROR_COUNT, interceptorCounter.get());
|
||||||
|
|
||||||
|
assertTrue(instance.getStatus() == StatusEnum.FAILED
|
||||||
|
|| instance.getStatus() == StatusEnum.ERRORED);
|
||||||
|
}
|
||||||
|
|
||||||
@Nonnull
|
@Nonnull
|
||||||
private JobInstanceStartRequest buildRequest(String jobId) {
|
private JobInstanceStartRequest buildRequest(String jobId) {
|
||||||
JobInstanceStartRequest request = new JobInstanceStartRequest();
|
JobInstanceStartRequest request = new JobInstanceStartRequest();
|
||||||
|
|
|
@ -185,7 +185,7 @@ public class BulkImportR4Test extends BaseJpaR4Test {
|
||||||
assertNotNull(instance.getCreateTime());
|
assertNotNull(instance.getCreateTime());
|
||||||
assertNotNull(instance.getStartTime());
|
assertNotNull(instance.getStartTime());
|
||||||
assertNull(instance.getEndTime());
|
assertNull(instance.getEndTime());
|
||||||
assertThat(instance.getErrorMessage(), containsString("NullPointerException: This is an exception"));
|
assertThat(instance.getErrorMessage(), containsString("This is an exception"));
|
||||||
});
|
});
|
||||||
|
|
||||||
} finally {
|
} finally {
|
||||||
|
|
|
@ -129,7 +129,7 @@ public class ReindexJobTest extends BaseJpaR4Test {
|
||||||
// Verify
|
// Verify
|
||||||
|
|
||||||
assertEquals(StatusEnum.ERRORED, outcome.getStatus());
|
assertEquals(StatusEnum.ERRORED, outcome.getStatus());
|
||||||
assertEquals("java.lang.NullPointerException: foo message", outcome.getErrorMessage());
|
assertEquals("foo message", outcome.getErrorMessage());
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../pom.xml</relativePath>
|
<relativePath>../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -7,7 +7,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>
|
<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
<artifactId>hapi-fhir-spring-boot-sample-client-okhttp</artifactId>
|
<artifactId>hapi-fhir-spring-boot-sample-client-okhttp</artifactId>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
<artifactId>hapi-fhir-spring-boot-sample-server-jersey</artifactId>
|
<artifactId>hapi-fhir-spring-boot-sample-server-jersey</artifactId>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-spring-boot</artifactId>
|
<artifactId>hapi-fhir-spring-boot</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../pom.xml</relativePath>
|
<relativePath>../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
<modelVersion>4.0.0</modelVersion>
|
<modelVersion>4.0.0</modelVersion>
|
||||||
|
|
|
@ -21,13 +21,19 @@ package ca.uhn.fhir.batch2.jobs.reindex;
|
||||||
*/
|
*/
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.api.IJobParametersValidator;
|
import ca.uhn.fhir.batch2.api.IJobParametersValidator;
|
||||||
|
import ca.uhn.fhir.batch2.jobs.parameters.PartitionedUrl;
|
||||||
import ca.uhn.fhir.batch2.jobs.parameters.UrlListValidator;
|
import ca.uhn.fhir.batch2.jobs.parameters.UrlListValidator;
|
||||||
|
import ca.uhn.fhir.util.UrlUtil;
|
||||||
import org.jetbrains.annotations.NotNull;
|
import org.jetbrains.annotations.NotNull;
|
||||||
import org.jetbrains.annotations.Nullable;
|
import org.jetbrains.annotations.Nullable;
|
||||||
|
|
||||||
|
import java.util.ArrayList;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
import java.util.regex.Matcher;
|
||||||
|
import java.util.regex.Pattern;
|
||||||
|
|
||||||
public class ReindexJobParametersValidator implements IJobParametersValidator<ReindexJobParameters> {
|
public class ReindexJobParametersValidator implements IJobParametersValidator<ReindexJobParameters> {
|
||||||
|
|
||||||
private final UrlListValidator myUrlListValidator;
|
private final UrlListValidator myUrlListValidator;
|
||||||
|
|
||||||
public ReindexJobParametersValidator(UrlListValidator theUrlListValidator) {
|
public ReindexJobParametersValidator(UrlListValidator theUrlListValidator) {
|
||||||
|
@ -37,6 +43,21 @@ public class ReindexJobParametersValidator implements IJobParametersValidator<Re
|
||||||
@Nullable
|
@Nullable
|
||||||
@Override
|
@Override
|
||||||
public List<String> validate(@NotNull ReindexJobParameters theParameters) {
|
public List<String> validate(@NotNull ReindexJobParameters theParameters) {
|
||||||
return myUrlListValidator.validatePartitionedUrls(theParameters.getPartitionedUrls());
|
List<String> errors = myUrlListValidator.validatePartitionedUrls(theParameters.getPartitionedUrls());
|
||||||
|
|
||||||
|
if (errors == null || errors.isEmpty()) {
|
||||||
|
// only check if there's no other errors (new list to fix immutable issues)
|
||||||
|
errors = new ArrayList<>();
|
||||||
|
List<PartitionedUrl> urls = theParameters.getPartitionedUrls();
|
||||||
|
for (PartitionedUrl purl : urls) {
|
||||||
|
String url = purl.getUrl();
|
||||||
|
|
||||||
|
if (url.contains(" ") || url.contains("\n") || url.contains("\t")) {
|
||||||
|
errors.add("Invalid URL. URL cannot contain spaces : " + url);
|
||||||
|
}
|
||||||
|
}
|
||||||
|
}
|
||||||
|
|
||||||
|
return errors;
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
|
@ -0,0 +1,47 @@
|
||||||
|
package ca.uhn.fhir.batch2.jobs.reindex;
|
||||||
|
|
||||||
|
import ca.uhn.fhir.batch2.jobs.parameters.UrlListValidator;
|
||||||
|
import org.junit.jupiter.api.Test;
|
||||||
|
import org.junit.jupiter.api.extension.ExtendWith;
|
||||||
|
import org.junit.jupiter.params.ParameterizedTest;
|
||||||
|
import org.junit.jupiter.params.provider.ValueSource;
|
||||||
|
import org.mockito.InjectMocks;
|
||||||
|
import org.mockito.Mock;
|
||||||
|
import org.mockito.junit.jupiter.MockitoExtension;
|
||||||
|
import org.springframework.beans.factory.annotation.Value;
|
||||||
|
|
||||||
|
import java.util.List;
|
||||||
|
|
||||||
|
import static org.junit.jupiter.api.Assertions.assertFalse;
|
||||||
|
import static org.junit.jupiter.api.Assertions.assertTrue;
|
||||||
|
|
||||||
|
@ExtendWith(MockitoExtension.class)
|
||||||
|
public class ReindexJobParametersValidatorTest {
|
||||||
|
|
||||||
|
@Mock
|
||||||
|
private UrlListValidator myListValidator;
|
||||||
|
|
||||||
|
@InjectMocks
|
||||||
|
private ReindexJobParametersValidator myValidator;
|
||||||
|
|
||||||
|
@ParameterizedTest
|
||||||
|
@ValueSource(strings = { "\n", " ", "\t" })
|
||||||
|
public void validate_urlWithSpace_fails(String theWhiteSpaceChar) {
|
||||||
|
List<String> errors = runTestWithUrl("Patient," + theWhiteSpaceChar + "Practitioner");
|
||||||
|
|
||||||
|
// verify
|
||||||
|
assertFalse(errors.isEmpty());
|
||||||
|
assertTrue(errors.get(0).contains("Invalid URL. URL cannot contain spaces"));
|
||||||
|
}
|
||||||
|
|
||||||
|
private List<String> runTestWithUrl(String theUrl) {
|
||||||
|
// setup
|
||||||
|
ReindexJobParameters parameters = new ReindexJobParameters();
|
||||||
|
parameters.addUrl(theUrl);
|
||||||
|
|
||||||
|
// test
|
||||||
|
List<String> errors = myValidator.validate(parameters);
|
||||||
|
|
||||||
|
return errors;
|
||||||
|
}
|
||||||
|
}
|
|
@ -6,7 +6,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -22,6 +22,7 @@ package ca.uhn.fhir.batch2.api;
|
||||||
|
|
||||||
import ca.uhn.fhir.batch2.coordinator.BatchWorkChunk;
|
import ca.uhn.fhir.batch2.coordinator.BatchWorkChunk;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
|
import ca.uhn.fhir.batch2.model.MarkWorkChunkAsErrorRequest;
|
||||||
import ca.uhn.fhir.batch2.model.StatusEnum;
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
import ca.uhn.fhir.batch2.model.WorkChunk;
|
import ca.uhn.fhir.batch2.model.WorkChunk;
|
||||||
|
|
||||||
|
@ -100,8 +101,26 @@ public interface IJobPersistence {
|
||||||
*
|
*
|
||||||
* @param theChunkId The chunk ID
|
* @param theChunkId The chunk ID
|
||||||
*/
|
*/
|
||||||
|
@Deprecated
|
||||||
void markWorkChunkAsErroredAndIncrementErrorCount(String theChunkId, String theErrorMessage);
|
void markWorkChunkAsErroredAndIncrementErrorCount(String theChunkId, String theErrorMessage);
|
||||||
|
|
||||||
|
/**
|
||||||
|
* Marks a given chunk as having errored (ie, may be recoverable)
|
||||||
|
*
|
||||||
|
* Returns the work chunk.
|
||||||
|
*
|
||||||
|
* NB: For backwards compatibility reasons, it could be an empty optional, but
|
||||||
|
* this doesn't mean it has no workchunk (just implementers are not updated)
|
||||||
|
*
|
||||||
|
* @param theParameters - the parameters for marking the workchunk with error
|
||||||
|
* @return - workchunk optional, if available.
|
||||||
|
*/
|
||||||
|
default Optional<WorkChunk> markWorkChunkAsErroredAndIncrementErrorCount(MarkWorkChunkAsErrorRequest theParameters) {
|
||||||
|
// old method - please override me
|
||||||
|
markWorkChunkAsErroredAndIncrementErrorCount(theParameters.getChunkId(), theParameters.getErrorMsg());
|
||||||
|
return Optional.empty(); // returning empty so as not to break implementers
|
||||||
|
}
|
||||||
|
|
||||||
/**
|
/**
|
||||||
* Marks a given chunk as having failed (i.e. probably not recoverable)
|
* Marks a given chunk as having failed (i.e. probably not recoverable)
|
||||||
*
|
*
|
||||||
|
|
|
@ -36,6 +36,7 @@ import ca.uhn.fhir.batch2.model.JobDefinition;
|
||||||
import ca.uhn.fhir.batch2.model.JobDefinitionStep;
|
import ca.uhn.fhir.batch2.model.JobDefinitionStep;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
import ca.uhn.fhir.batch2.model.JobWorkCursor;
|
import ca.uhn.fhir.batch2.model.JobWorkCursor;
|
||||||
|
import ca.uhn.fhir.batch2.model.MarkWorkChunkAsErrorRequest;
|
||||||
import ca.uhn.fhir.batch2.model.StatusEnum;
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
import ca.uhn.fhir.batch2.model.WorkChunk;
|
import ca.uhn.fhir.batch2.model.WorkChunk;
|
||||||
import ca.uhn.fhir.i18n.Msg;
|
import ca.uhn.fhir.i18n.Msg;
|
||||||
|
@ -48,10 +49,23 @@ import javax.annotation.Nullable;
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
import java.util.Iterator;
|
import java.util.Iterator;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
import java.util.Optional;
|
||||||
|
|
||||||
public class StepExecutionSvc {
|
public class StepExecutionSvc {
|
||||||
private static final Logger ourLog = LoggerFactory.getLogger(StepExecutionSvc.class);
|
private static final Logger ourLog = LoggerFactory.getLogger(StepExecutionSvc.class);
|
||||||
|
|
||||||
|
// TODO
|
||||||
|
/**
|
||||||
|
* This retry only works if your channel producer supports
|
||||||
|
* retries on message processing exceptions.
|
||||||
|
*
|
||||||
|
* What's more, we may one day want to have this configurable
|
||||||
|
* by the caller.
|
||||||
|
* But since this is not a feature of HAPI,
|
||||||
|
* this has not been done yet.
|
||||||
|
*/
|
||||||
|
public static final int MAX_CHUNK_ERROR_COUNT = 3;
|
||||||
|
|
||||||
private final IJobPersistence myJobPersistence;
|
private final IJobPersistence myJobPersistence;
|
||||||
private final BatchJobSender myBatchJobSender;
|
private final BatchJobSender myBatchJobSender;
|
||||||
|
|
||||||
|
@ -303,7 +317,20 @@ public class StepExecutionSvc {
|
||||||
} catch (Exception e) {
|
} catch (Exception e) {
|
||||||
ourLog.error("Failure executing job {} step {}", jobDefinitionId, targetStepId, e);
|
ourLog.error("Failure executing job {} step {}", jobDefinitionId, targetStepId, e);
|
||||||
if (theStepExecutionDetails.hasAssociatedWorkChunk()) {
|
if (theStepExecutionDetails.hasAssociatedWorkChunk()) {
|
||||||
myJobPersistence.markWorkChunkAsErroredAndIncrementErrorCount(chunkId, e.toString());
|
MarkWorkChunkAsErrorRequest parameters = new MarkWorkChunkAsErrorRequest();
|
||||||
|
parameters.setChunkId(chunkId);
|
||||||
|
parameters.setErrorMsg(e.getMessage());
|
||||||
|
Optional<WorkChunk> updatedOp = myJobPersistence.markWorkChunkAsErroredAndIncrementErrorCount(parameters);
|
||||||
|
if (updatedOp.isPresent()) {
|
||||||
|
WorkChunk chunk = updatedOp.get();
|
||||||
|
|
||||||
|
// TODO - marking for posterity
|
||||||
|
// see comments on MAX_CHUNK_ERROR_COUNT
|
||||||
|
if (chunk.getErrorCount() > MAX_CHUNK_ERROR_COUNT) {
|
||||||
|
myJobPersistence.markWorkChunkAsFailed(chunkId, "Too many errors: " + chunk.getErrorCount());
|
||||||
|
return false;
|
||||||
|
}
|
||||||
|
}
|
||||||
}
|
}
|
||||||
throw new JobStepFailedException(Msg.code(2041) + e.getMessage(), e);
|
throw new JobStepFailedException(Msg.code(2041) + e.getMessage(), e);
|
||||||
} catch (Throwable t) {
|
} catch (Throwable t) {
|
||||||
|
|
|
@ -23,6 +23,7 @@ package ca.uhn.fhir.batch2.coordinator;
|
||||||
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
import ca.uhn.fhir.batch2.api.IJobPersistence;
|
||||||
import ca.uhn.fhir.batch2.api.JobOperationResultJson;
|
import ca.uhn.fhir.batch2.api.JobOperationResultJson;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
|
import ca.uhn.fhir.batch2.model.MarkWorkChunkAsErrorRequest;
|
||||||
import ca.uhn.fhir.batch2.model.StatusEnum;
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
import ca.uhn.fhir.batch2.model.WorkChunk;
|
import ca.uhn.fhir.batch2.model.WorkChunk;
|
||||||
|
|
||||||
|
@ -92,6 +93,11 @@ public class SynchronizedJobPersistenceWrapper implements IJobPersistence {
|
||||||
myWrap.markWorkChunkAsErroredAndIncrementErrorCount(theChunkId, theErrorMessage);
|
myWrap.markWorkChunkAsErroredAndIncrementErrorCount(theChunkId, theErrorMessage);
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@Override
|
||||||
|
public Optional<WorkChunk> markWorkChunkAsErroredAndIncrementErrorCount(MarkWorkChunkAsErrorRequest theParameters) {
|
||||||
|
return myWrap.markWorkChunkAsErroredAndIncrementErrorCount(theParameters);
|
||||||
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
public synchronized void markWorkChunkAsFailed(String theChunkId, String theErrorMessage) {
|
public synchronized void markWorkChunkAsFailed(String theChunkId, String theErrorMessage) {
|
||||||
myWrap.markWorkChunkAsFailed(theChunkId, theErrorMessage);
|
myWrap.markWorkChunkAsFailed(theChunkId, theErrorMessage);
|
||||||
|
|
|
@ -0,0 +1,33 @@
|
||||||
|
package ca.uhn.fhir.batch2.model;
|
||||||
|
|
||||||
|
public class MarkWorkChunkAsErrorRequest {
|
||||||
|
private String myChunkId;
|
||||||
|
|
||||||
|
private String myErrorMsg;
|
||||||
|
|
||||||
|
private boolean myIncludeData;
|
||||||
|
|
||||||
|
public String getChunkId() {
|
||||||
|
return myChunkId;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void setChunkId(String theChunkId) {
|
||||||
|
myChunkId = theChunkId;
|
||||||
|
}
|
||||||
|
|
||||||
|
public String getErrorMsg() {
|
||||||
|
return myErrorMsg;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void setErrorMsg(String theErrorMsg) {
|
||||||
|
myErrorMsg = theErrorMsg;
|
||||||
|
}
|
||||||
|
|
||||||
|
public boolean isIncludeData() {
|
||||||
|
return myIncludeData;
|
||||||
|
}
|
||||||
|
|
||||||
|
public void setIncludeData(boolean theIncludeData) {
|
||||||
|
myIncludeData = theIncludeData;
|
||||||
|
}
|
||||||
|
}
|
|
@ -116,6 +116,7 @@ public enum StatusEnum {
|
||||||
retVal = ourNotEndedStatuses;
|
retVal = ourNotEndedStatuses;
|
||||||
return retVal;
|
return retVal;
|
||||||
}
|
}
|
||||||
|
|
||||||
@Nonnull
|
@Nonnull
|
||||||
private static void initializeStaticEndedStatuses() {
|
private static void initializeStaticEndedStatuses() {
|
||||||
EnumSet<StatusEnum> endedSet = EnumSet.noneOf(StatusEnum.class);
|
EnumSet<StatusEnum> endedSet = EnumSet.noneOf(StatusEnum.class);
|
||||||
|
|
|
@ -12,6 +12,7 @@ import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstanceStartRequest;
|
import ca.uhn.fhir.batch2.model.JobInstanceStartRequest;
|
||||||
import ca.uhn.fhir.batch2.model.JobWorkNotification;
|
import ca.uhn.fhir.batch2.model.JobWorkNotification;
|
||||||
import ca.uhn.fhir.batch2.model.JobWorkNotificationJsonMessage;
|
import ca.uhn.fhir.batch2.model.JobWorkNotificationJsonMessage;
|
||||||
|
import ca.uhn.fhir.batch2.model.MarkWorkChunkAsErrorRequest;
|
||||||
import ca.uhn.fhir.batch2.model.StatusEnum;
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
import ca.uhn.fhir.batch2.model.WorkChunk;
|
import ca.uhn.fhir.batch2.model.WorkChunk;
|
||||||
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelReceiver;
|
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelReceiver;
|
||||||
|
@ -245,8 +246,11 @@ public class JobCoordinatorImplTest extends BaseBatch2Test {
|
||||||
assertEquals(PARAM_2_VALUE, params.getParam2());
|
assertEquals(PARAM_2_VALUE, params.getParam2());
|
||||||
assertEquals(PASSWORD_VALUE, params.getPassword());
|
assertEquals(PASSWORD_VALUE, params.getPassword());
|
||||||
|
|
||||||
verify(myJobInstancePersister, times(1)).markWorkChunkAsErroredAndIncrementErrorCount(eq(CHUNK_ID), myErrorMessageCaptor.capture());
|
ArgumentCaptor<MarkWorkChunkAsErrorRequest> parametersArgumentCaptor = ArgumentCaptor.forClass(MarkWorkChunkAsErrorRequest.class);
|
||||||
assertEquals("java.lang.NullPointerException: This is an error message", myErrorMessageCaptor.getValue());
|
verify(myJobInstancePersister, times(1)).markWorkChunkAsErroredAndIncrementErrorCount(parametersArgumentCaptor.capture());
|
||||||
|
MarkWorkChunkAsErrorRequest capturedParams = parametersArgumentCaptor.getValue();
|
||||||
|
assertEquals(CHUNK_ID, capturedParams.getChunkId());
|
||||||
|
assertEquals("This is an error message", capturedParams.getErrorMsg());
|
||||||
}
|
}
|
||||||
|
|
||||||
@Test
|
@Test
|
||||||
|
|
|
@ -19,6 +19,7 @@ import ca.uhn.fhir.batch2.model.JobDefinitionReductionStep;
|
||||||
import ca.uhn.fhir.batch2.model.JobDefinitionStep;
|
import ca.uhn.fhir.batch2.model.JobDefinitionStep;
|
||||||
import ca.uhn.fhir.batch2.model.JobInstance;
|
import ca.uhn.fhir.batch2.model.JobInstance;
|
||||||
import ca.uhn.fhir.batch2.model.JobWorkCursor;
|
import ca.uhn.fhir.batch2.model.JobWorkCursor;
|
||||||
|
import ca.uhn.fhir.batch2.model.MarkWorkChunkAsErrorRequest;
|
||||||
import ca.uhn.fhir.batch2.model.StatusEnum;
|
import ca.uhn.fhir.batch2.model.StatusEnum;
|
||||||
import ca.uhn.fhir.batch2.model.WorkChunk;
|
import ca.uhn.fhir.batch2.model.WorkChunk;
|
||||||
import ca.uhn.fhir.batch2.model.WorkChunkData;
|
import ca.uhn.fhir.batch2.model.WorkChunkData;
|
||||||
|
@ -34,9 +35,12 @@ import org.mockito.junit.jupiter.MockitoExtension;
|
||||||
import java.util.ArrayList;
|
import java.util.ArrayList;
|
||||||
import java.util.Arrays;
|
import java.util.Arrays;
|
||||||
import java.util.List;
|
import java.util.List;
|
||||||
|
import java.util.Optional;
|
||||||
|
import java.util.concurrent.atomic.AtomicInteger;
|
||||||
|
|
||||||
import static org.junit.jupiter.api.Assertions.assertEquals;
|
import static org.junit.jupiter.api.Assertions.assertEquals;
|
||||||
import static org.junit.jupiter.api.Assertions.assertFalse;
|
import static org.junit.jupiter.api.Assertions.assertFalse;
|
||||||
|
import static org.junit.jupiter.api.Assertions.assertNotNull;
|
||||||
import static org.junit.jupiter.api.Assertions.assertTrue;
|
import static org.junit.jupiter.api.Assertions.assertTrue;
|
||||||
import static org.junit.jupiter.api.Assertions.fail;
|
import static org.junit.jupiter.api.Assertions.fail;
|
||||||
import static org.mockito.ArgumentMatchers.any;
|
import static org.mockito.ArgumentMatchers.any;
|
||||||
|
@ -492,11 +496,70 @@ public class StepExecutionSvcTest {
|
||||||
fail("Expected Exception to be thrown");
|
fail("Expected Exception to be thrown");
|
||||||
} catch (JobStepFailedException jobStepFailedException) {
|
} catch (JobStepFailedException jobStepFailedException) {
|
||||||
assertTrue(jobStepFailedException.getMessage().contains(msg));
|
assertTrue(jobStepFailedException.getMessage().contains(msg));
|
||||||
} catch (Exception anythingElse) {
|
|
||||||
fail(anythingElse.getMessage());
|
|
||||||
}
|
}
|
||||||
}
|
}
|
||||||
|
|
||||||
|
@Test
|
||||||
|
public void doExecution_stepWorkerThrowsRandomExceptionForever_eventuallyMarksAsFailedAndReturnsFalse() {
|
||||||
|
// setup
|
||||||
|
int counter = 0;
|
||||||
|
AtomicInteger errorCounter = new AtomicInteger();
|
||||||
|
String errorMsg = "my Error Message";
|
||||||
|
JobInstance jobInstance = getTestJobInstance();
|
||||||
|
WorkChunk chunk = new WorkChunk();
|
||||||
|
chunk.setId("chunkId");
|
||||||
|
chunk.setData(new StepInputData());
|
||||||
|
|
||||||
|
JobWorkCursor<TestJobParameters, StepInputData, StepOutputData> workCursor = mock(JobWorkCursor.class);
|
||||||
|
|
||||||
|
JobDefinitionStep<TestJobParameters, StepInputData, StepOutputData> step = mockOutWorkCursor(StepType.INTERMEDIATE, workCursor, true, false);
|
||||||
|
|
||||||
|
// when
|
||||||
|
when(myNonReductionStep.run(any(), any()))
|
||||||
|
.thenThrow(new RuntimeException(errorMsg));
|
||||||
|
when(myJobPersistence.markWorkChunkAsErroredAndIncrementErrorCount(any(MarkWorkChunkAsErrorRequest.class)))
|
||||||
|
.thenAnswer((p) -> {
|
||||||
|
WorkChunk ec = new WorkChunk();
|
||||||
|
ec.setId(chunk.getId());
|
||||||
|
int count = errorCounter.getAndIncrement();
|
||||||
|
ec.setErrorCount(count);
|
||||||
|
return Optional.of(ec);
|
||||||
|
});
|
||||||
|
|
||||||
|
// test
|
||||||
|
Boolean processedOutcomeSuccessfully = null;
|
||||||
|
do {
|
||||||
|
try {
|
||||||
|
JobStepExecutorOutput<?, ?, ?> output = myExecutorSvc.doExecution(
|
||||||
|
workCursor,
|
||||||
|
jobInstance,
|
||||||
|
chunk
|
||||||
|
);
|
||||||
|
/*
|
||||||
|
* Getting a value here means we are no longer
|
||||||
|
* throwing exceptions. Which is the desired outcome.
|
||||||
|
* We just now need to ensure that this outcome is
|
||||||
|
* "false"
|
||||||
|
*/
|
||||||
|
processedOutcomeSuccessfully = output.isSuccessful();
|
||||||
|
} catch (JobStepFailedException ex) {
|
||||||
|
assertTrue(ex.getMessage().contains(errorMsg));
|
||||||
|
counter++;
|
||||||
|
}
|
||||||
|
/*
|
||||||
|
* +2 because...
|
||||||
|
* we check for > MAX_CHUNK_ERROR_COUNT (+1)
|
||||||
|
* we want it to run one extra time here (+1)
|
||||||
|
*/
|
||||||
|
} while (processedOutcomeSuccessfully == null && counter < StepExecutionSvc.MAX_CHUNK_ERROR_COUNT + 2);
|
||||||
|
|
||||||
|
// verify
|
||||||
|
assertNotNull(processedOutcomeSuccessfully);
|
||||||
|
// +1 because of the > MAX_CHUNK_ERROR_COUNT check
|
||||||
|
assertEquals(StepExecutionSvc.MAX_CHUNK_ERROR_COUNT + 1, counter);
|
||||||
|
assertFalse(processedOutcomeSuccessfully);
|
||||||
|
}
|
||||||
|
|
||||||
private void runExceptionThrowingTest(Exception theExceptionToThrow) {
|
private void runExceptionThrowingTest(Exception theExceptionToThrow) {
|
||||||
// setup
|
// setup
|
||||||
JobInstance jobInstance = getTestJobInstance();
|
JobInstance jobInstance = getTestJobInstance();
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
<modelVersion>4.0.0</modelVersion>
|
<modelVersion>4.0.0</modelVersion>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
<modelVersion>4.0.0</modelVersion>
|
<modelVersion>4.0.0</modelVersion>
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -1,7 +1,7 @@
|
||||||
package ca.uhn.fhir.jpa.patch;
|
package ca.uhn.fhir.jpa.patch;
|
||||||
|
|
||||||
import ca.uhn.fhir.i18n.Msg;
|
|
||||||
import ca.uhn.fhir.context.FhirContext;
|
import ca.uhn.fhir.context.FhirContext;
|
||||||
|
import ca.uhn.fhir.i18n.Msg;
|
||||||
import ca.uhn.fhir.rest.api.Constants;
|
import ca.uhn.fhir.rest.api.Constants;
|
||||||
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
|
||||||
import com.github.dnault.xmlpatch.Patcher;
|
import com.github.dnault.xmlpatch.Patcher;
|
||||||
|
|
|
@ -24,6 +24,7 @@ import ca.uhn.fhir.jpa.subscription.channel.api.IChannelProducer;
|
||||||
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelReceiver;
|
import ca.uhn.fhir.jpa.subscription.channel.api.IChannelReceiver;
|
||||||
import org.springframework.messaging.support.ExecutorSubscribableChannel;
|
import org.springframework.messaging.support.ExecutorSubscribableChannel;
|
||||||
|
|
||||||
|
import java.util.ArrayList;
|
||||||
import java.util.concurrent.BlockingQueue;
|
import java.util.concurrent.BlockingQueue;
|
||||||
import java.util.concurrent.LinkedBlockingQueue;
|
import java.util.concurrent.LinkedBlockingQueue;
|
||||||
import java.util.concurrent.ThreadPoolExecutor;
|
import java.util.concurrent.ThreadPoolExecutor;
|
||||||
|
@ -44,9 +45,7 @@ public class LinkedBlockingChannel extends ExecutorSubscribableChannel implement
|
||||||
}
|
}
|
||||||
|
|
||||||
public void clearInterceptorsForUnitTest() {
|
public void clearInterceptorsForUnitTest() {
|
||||||
while (getInterceptors().size() > 0) {
|
setInterceptors(new ArrayList<>());
|
||||||
removeInterceptor(0);
|
|
||||||
}
|
|
||||||
}
|
}
|
||||||
|
|
||||||
@Override
|
@Override
|
||||||
|
|
|
@ -34,6 +34,7 @@ import org.apache.commons.lang3.concurrent.BasicThreadFactory;
|
||||||
import org.slf4j.Logger;
|
import org.slf4j.Logger;
|
||||||
import org.slf4j.LoggerFactory;
|
import org.slf4j.LoggerFactory;
|
||||||
|
|
||||||
|
import javax.annotation.Nonnull;
|
||||||
import javax.annotation.PreDestroy;
|
import javax.annotation.PreDestroy;
|
||||||
import java.util.Collections;
|
import java.util.Collections;
|
||||||
import java.util.HashMap;
|
import java.util.HashMap;
|
||||||
|
@ -76,8 +77,11 @@ public class LinkedBlockingChannelFactory implements IChannelFactory {
|
||||||
// TODO - does this need retry settings?
|
// TODO - does this need retry settings?
|
||||||
final String channelName = myChannelNamer.getChannelName(theChannelName, theChannelSettings);
|
final String channelName = myChannelNamer.getChannelName(theChannelName, theChannelSettings);
|
||||||
|
|
||||||
return myChannels.computeIfAbsent(channelName, t -> {
|
return myChannels.computeIfAbsent(channelName, t -> buildLinkedBlockingChannel(theConcurrentConsumers, channelName));
|
||||||
|
}
|
||||||
|
|
||||||
|
@Nonnull
|
||||||
|
private LinkedBlockingChannel buildLinkedBlockingChannel(int theConcurrentConsumers, String channelName) {
|
||||||
String threadNamingPattern = channelName + "-%d";
|
String threadNamingPattern = channelName + "-%d";
|
||||||
|
|
||||||
ThreadFactory threadFactory = new BasicThreadFactory.Builder()
|
ThreadFactory threadFactory = new BasicThreadFactory.Builder()
|
||||||
|
@ -108,9 +112,9 @@ public class LinkedBlockingChannelFactory implements IChannelFactory {
|
||||||
queue,
|
queue,
|
||||||
threadFactory,
|
threadFactory,
|
||||||
rejectedExecutionHandler);
|
rejectedExecutionHandler);
|
||||||
return new LinkedBlockingChannel(channelName, executor, queue);
|
|
||||||
|
|
||||||
});
|
LinkedBlockingChannel retval = new LinkedBlockingChannel(channelName, executor, queue);
|
||||||
|
return retval;
|
||||||
}
|
}
|
||||||
|
|
||||||
private Thread.UncaughtExceptionHandler uncaughtExceptionHandler(String theChannelName) {
|
private Thread.UncaughtExceptionHandler uncaughtExceptionHandler(String theChannelName) {
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../pom.xml</relativePath>
|
<relativePath>../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-deployable-pom</artifactId>
|
<artifactId>hapi-deployable-pom</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../pom.xml</relativePath>
|
<relativePath>../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
@ -58,37 +58,37 @@
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-structures-dstu3</artifactId>
|
<artifactId>hapi-fhir-structures-dstu3</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
|
<artifactId>hapi-fhir-structures-hl7org-dstu2</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-structures-r4</artifactId>
|
<artifactId>hapi-fhir-structures-r4</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-structures-r5</artifactId>
|
<artifactId>hapi-fhir-structures-r5</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
|
<artifactId>hapi-fhir-validation-resources-dstu2</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
|
<artifactId>hapi-fhir-validation-resources-dstu3</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
|
<artifactId>hapi-fhir-validation-resources-r4</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
<dependency>
|
<dependency>
|
||||||
<groupId>org.apache.velocity</groupId>
|
<groupId>org.apache.velocity</groupId>
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../pom.xml</relativePath>
|
<relativePath>../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
4
pom.xml
4
pom.xml
|
@ -6,7 +6,7 @@
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<packaging>pom</packaging>
|
<packaging>pom</packaging>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<name>HAPI-FHIR</name>
|
<name>HAPI-FHIR</name>
|
||||||
<description>An open-source implementation of the FHIR specification in Java.</description>
|
<description>An open-source implementation of the FHIR specification in Java.</description>
|
||||||
<url>https://hapifhir.io</url>
|
<url>https://hapifhir.io</url>
|
||||||
|
@ -2015,7 +2015,7 @@
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir-checkstyle</artifactId>
|
<artifactId>hapi-fhir-checkstyle</artifactId>
|
||||||
<!-- Remember to bump this when you upgrade the version -->
|
<!-- Remember to bump this when you upgrade the version -->
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
</dependency>
|
</dependency>
|
||||||
</dependencies>
|
</dependencies>
|
||||||
</plugin>
|
</plugin>
|
||||||
|
|
|
@ -6,7 +6,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../../pom.xml</relativePath>
|
<relativePath>../../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -4,7 +4,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../../pom.xml</relativePath>
|
<relativePath>../../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
|
@ -5,7 +5,7 @@
|
||||||
<parent>
|
<parent>
|
||||||
<groupId>ca.uhn.hapi.fhir</groupId>
|
<groupId>ca.uhn.hapi.fhir</groupId>
|
||||||
<artifactId>hapi-fhir</artifactId>
|
<artifactId>hapi-fhir</artifactId>
|
||||||
<version>6.1.0-PRE13-SNAPSHOT</version>
|
<version>6.1.0-PRE14-SNAPSHOT</version>
|
||||||
<relativePath>../../pom.xml</relativePath>
|
<relativePath>../../pom.xml</relativePath>
|
||||||
</parent>
|
</parent>
|
||||||
|
|
||||||
|
|
Loading…
Reference in New Issue