Add unit tests for #144
This commit is contained in:
jamesagnew
parent
e63323ca5c
commit
0ca1b9feab
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@ -6,6 +6,7 @@ import static org.junit.Assert.*;
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import java.io.IOException;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Observable;
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import net.sf.json.JSON;
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import net.sf.json.JSONSerializer;
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@ -26,9 +27,9 @@ import ca.uhn.fhir.model.api.TagList;
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import ca.uhn.fhir.model.base.composite.BaseCodingDt;
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import ca.uhn.fhir.model.dstu2.composite.CodingDt;
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import ca.uhn.fhir.model.dstu2.composite.HumanNameDt;
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import ca.uhn.fhir.model.dstu2.composite.ResourceReferenceDt;
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import ca.uhn.fhir.model.dstu2.resource.Binary;
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import ca.uhn.fhir.model.dstu2.resource.MedicationPrescription;
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import ca.uhn.fhir.model.dstu2.resource.Observation;
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import ca.uhn.fhir.model.dstu2.resource.Patient;
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import ca.uhn.fhir.model.dstu2.resource.QuestionnaireAnswers;
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import ca.uhn.fhir.model.dstu2.valueset.IdentifierUseEnum;
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@ -53,11 +54,48 @@ public class JsonParserTest {
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assertEquals("{\"resourceType\":\"Binary\",\"id\":\"11\",\"meta\":{\"versionId\":\"22\"},\"contentType\":\"foo\",\"content\":\"AQIDBA==\"}", val);
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}
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/**
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* see #144 and #146
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*/
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@Test
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public void testParseContained() {
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FhirContext c = FhirContext.forDstu2();
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IParser parser = c.newJsonParser().setPrettyPrint(true);
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Observation o = new Observation();
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o.getCode().setText("obs text");
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Patient p = new Patient();
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p.addName().addFamily("patient family");
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o.getSubject().setResource(p);
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String enc = parser.encodeResourceToString(o);
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ourLog.info(enc);
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//@formatter:off
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assertThat(enc, stringContainsInOrder(
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"\"resourceType\":\"Observation\"",
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"\"contained\":[",
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"\"resourceType\":\"Patient\",",
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"\"id\":\"1\"",
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"\"reference\":\"#1\""
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));
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//@formatter:on
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o = parser.parseResource(Observation.class, enc);
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assertEquals("obs text", o.getCode().getText());
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assertNotNull(o.getSubject().getResource());
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p = (Patient) o.getSubject().getResource();
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assertEquals("patient family", p.getNameFirstRep().getFamilyAsSingleString());
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}
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@Test
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public void testEncodeAndParseMetaProfileAndTags() {
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Patient p = new Patient();
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p.addName().addFamily("FAMILY");
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List<IdDt> profiles = new ArrayList<IdDt>();
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profiles.add(new IdDt("http://foo/Profile1"));
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profiles.add(new IdDt("http://foo/Profile2"));
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@ -67,10 +105,10 @@ public class JsonParserTest {
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tagList.addTag("scheme1", "term1", "label1");
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tagList.addTag("scheme2", "term2", "label2");
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ResourceMetadataKeyEnum.TAG_LIST.put(p, tagList);
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String enc = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p);
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ourLog.info(enc);
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//@formatter:off
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assertThat(enc, stringContainsInOrder("\"meta\":{",
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"\"profile\":[",
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@ -91,39 +129,38 @@ public class JsonParserTest {
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"]",
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"},"));
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//@formatter:on
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Patient parsed = ourCtx.newJsonParser().parseResource(Patient.class, enc);
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List<IdDt> gotLabels = ResourceMetadataKeyEnum.PROFILES.get(parsed);
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assertEquals(2,gotLabels.size());
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assertEquals(2, gotLabels.size());
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IdDt label = (IdDt) gotLabels.get(0);
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assertEquals("http://foo/Profile1", label.getValue());
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label = (IdDt) gotLabels.get(1);
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assertEquals("http://foo/Profile2", label.getValue());
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tagList = ResourceMetadataKeyEnum.TAG_LIST.get(parsed);
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assertEquals(2, tagList.size());
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assertEquals(new Tag("scheme1", "term1", "label1"), tagList.get(0));
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assertEquals(new Tag("scheme2", "term2", "label2"), tagList.get(1));
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}
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@Test
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public void testEncodeAndParseSecurityLabels() {
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Patient p = new Patient();
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p.addName().addFamily("FAMILY");
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List<BaseCodingDt> labels = new ArrayList<BaseCodingDt>();
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labels.add(new CodingDt().setSystem("SYSTEM1").setCode("CODE1").setDisplay("DISPLAY1").setPrimary(true).setVersion("VERSION1"));
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labels.add(new CodingDt().setSystem("SYSTEM2").setCode("CODE2").setDisplay("DISPLAY2").setPrimary(false).setVersion("VERSION2"));
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ResourceMetadataKeyEnum.SECURITY_LABELS.put(p, labels);
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String enc = ourCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(p);
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ourLog.info(enc);
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//@formatter:off
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assertEquals("{\n" +
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" \"resourceType\":\"Patient\",\n" +
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@ -154,11 +191,11 @@ public class JsonParserTest {
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" ]\n" +
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"}", enc.trim());
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//@formatter:on
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Patient parsed = ourCtx.newJsonParser().parseResource(Patient.class, enc);
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List<BaseCodingDt> gotLabels = ResourceMetadataKeyEnum.SECURITY_LABELS.get(parsed);
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assertEquals(2,gotLabels.size());
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assertEquals(2, gotLabels.size());
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CodingDt label = (CodingDt) gotLabels.get(0);
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assertEquals("SYSTEM1", label.getSystem());
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@ -175,7 +212,6 @@ public class JsonParserTest {
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assertEquals("VERSION2", label.getVersion());
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}
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/**
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* Fixing #89
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*/
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@ -183,9 +219,9 @@ public class JsonParserTest {
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public void testEncodeBundleWithDeletedEntry() throws ConfigurationException, DataFormatException, IOException {
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Bundle b = ourCtx.newXmlParser().parseBundle(IOUtils.toString(JsonParserTest.class.getResourceAsStream("/xml-bundle.xml")));
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String val = ourCtx.newJsonParser().encodeBundleToString(b);
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ourLog.info(val);
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//@formatter:off
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assertThat(val, containsString("\"deleted\":{" +
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"\"type\":\"Patient\"," +
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@ -236,39 +272,12 @@ public class JsonParserTest {
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ourLog.info(output);
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String enc = ourCtx.newJsonParser().encodeResourceToString(patient);
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assertThat(enc, Matchers.stringContainsInOrder("{\"resourceType\":\"Patient\",",
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"\"extension\":[{\"url\":\"http://example.com/extensions#someext\",\"valueDateTime\":\"2011-01-02T11:13:15\"}",
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"{\"url\":\"http://example.com#parent\",\"extension\":[{\"url\":\"http://example.com#child\",\"valueString\":\"value1\"},{\"url\":\"http://example.com#child\",\"valueString\":\"value2\"}]}"
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));
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assertThat(enc, Matchers.stringContainsInOrder("\"modifierExtension\":[" +
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"{" +
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"\"url\":\"http://example.com/extensions#modext\"," +
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"\"valueDate\":\"1995-01-02\"" +
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"}" +
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"],"));
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assertThat(enc, containsString("\"_given\":[" +
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"{" +
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"\"extension\":[" +
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"{" +
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"\"url\":\"http://examples.com#givenext\"," +
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"\"valueString\":\"given\"" +
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"}" +
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"]" +
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"}," +
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"{" +
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"\"extension\":[" +
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"{" +
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"\"url\":\"http://examples.com#givenext_parent\"," +
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"\"extension\":[" +
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"{" +
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"\"url\":\"http://examples.com#givenext_child\"," +
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"\"valueString\":\"CHILD\"" +
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"}" +
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"]" +
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"}" +
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"]" +
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"}"));
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assertThat(enc, Matchers.stringContainsInOrder("{\"resourceType\":\"Patient\",", "\"extension\":[{\"url\":\"http://example.com/extensions#someext\",\"valueDateTime\":\"2011-01-02T11:13:15\"}",
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"{\"url\":\"http://example.com#parent\",\"extension\":[{\"url\":\"http://example.com#child\",\"valueString\":\"value1\"},{\"url\":\"http://example.com#child\",\"valueString\":\"value2\"}]}"));
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assertThat(enc, Matchers.stringContainsInOrder("\"modifierExtension\":[" + "{" + "\"url\":\"http://example.com/extensions#modext\"," + "\"valueDate\":\"1995-01-02\"" + "}" + "],"));
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assertThat(enc, containsString("\"_given\":[" + "{" + "\"extension\":[" + "{" + "\"url\":\"http://examples.com#givenext\"," + "\"valueString\":\"given\"" + "}" + "]" + "}," + "{" + "\"extension\":[" + "{" + "\"url\":\"http://examples.com#givenext_parent\"," + "\"extension\":[" + "{"
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+ "\"url\":\"http://examples.com#givenext_child\"," + "\"valueString\":\"CHILD\"" + "}" + "]" + "}" + "]" + "}"));
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/*
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* Now parse this back
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*/
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@ -307,22 +316,20 @@ public class JsonParserTest {
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}
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/**
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* #65
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*/
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@Test
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public void testJsonPrimitiveWithExtensionEncoding() {
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QuestionnaireAnswers parsed = new QuestionnaireAnswers();
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parsed.getGroup().setLinkId("value123");
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parsed.getGroup().getLinkIdElement().addUndeclaredExtension(false, "http://123", new StringDt("HELLO"));
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String encoded = ourCtx.newJsonParser().setPrettyPrint(false).encodeResourceToString(parsed);
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ourLog.info(encoded);
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assertThat(encoded, containsString("{\"linkId\":\"value123\",\"_linkId\":{\"extension\":[{\"url\":\"http://123\",\"valueString\":\"HELLO\"}]}}"));
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}
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@Test
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@ -358,10 +365,10 @@ public class JsonParserTest {
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" }]\n" +
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"}";
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//@formatter:on
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Bundle b = ourCtx.newJsonParser().parseBundle(bundle);
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assertEquals(1, b.getEntries().size());
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Patient pt = (Patient) b.getEntries().get(0).getResource();
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assertEquals("http://foo/fhirBase2/Patient/1/_history/2", pt.getId().getValue());
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assertEquals("2012-01-02", pt.getBirthDateElement().getValueAsString());
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@ -370,12 +377,12 @@ public class JsonParserTest {
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assertEquals("POST", ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get(pt).getCode());
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assertEquals("http://foo/Patient?identifier=value", ResourceMetadataKeyEnum.LINK_SEARCH.get(pt));
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assertEquals("2001-02-22T11:22:33-05:00", ResourceMetadataKeyEnum.UPDATED.get(pt).getValueAsString());
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Bundle toBundle = new Bundle();
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toBundle.getLinkBase().setValue("http://foo/fhirBase1");
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toBundle.getTotalResults().setValue(1);
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toBundle.getLinkSelf().setValue("http://localhost:52788/Binary?_pretty=true");
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toBundle.addResource(pt, ourCtx, "http://foo/fhirBase1");
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String reEncoded = ourCtx.newJsonParser().setPrettyPrint(true).encodeBundleToString(toBundle);
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@ -394,22 +401,20 @@ public class JsonParserTest {
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}
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@Test
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public void testParsePatientInBundle() {
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String text = "{\"resourceType\":\"Bundle\",\"id\":null,\"base\":\"http://localhost:57931/fhir/contextDev\",\"total\":1,\"link\":[{\"relation\":\"self\",\"url\":\"http://localhost:57931/fhir/contextDev/Patient?identifier=urn%3AMultiFhirVersionTest%7CtestSubmitPatient01&_format=json\"}],\"entry\":[{\"resource\":{\"resourceType\":\"Patient\",\"id\":\"1\",\"meta\":{\"versionId\":\"1\",\"lastUpdated\":\"2014-12-20T18:41:29.706-05:00\"},\"identifier\":[{\"system\":\"urn:MultiFhirVersionTest\",\"value\":\"testSubmitPatient01\"}]}}]}";
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FhirContext ctx = FhirContext.forDstu2();
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Bundle b = ctx.newJsonParser().parseBundle(text);
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IResource patient = b.getEntries().get(0).getResource();
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assertEquals(Patient.class, patient.getClass());
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assertNull(ResourceMetadataKeyEnum.TAG_LIST.get(patient));
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assertNull(ResourceMetadataKeyEnum.PROFILES.get(patient));
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}
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@Test
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public void testParseAndEncodeBundle() throws Exception {
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String content = IOUtils.toString(JsonParserTest.class.getResourceAsStream("/bundle-example.json"));
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@ -455,22 +460,25 @@ public class JsonParserTest {
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String content = IOUtils.toString(JsonParserTest.class.getResourceAsStream("/bundle-transaction.json"));
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Bundle parsed = ourCtx.newJsonParser().parseBundle(content);
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// assertEquals("http://example.com/base/Bundle/example/_history/1", parsed.getId().getValue());
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// assertEquals("1", parsed.getResourceMetadata().get(ResourceMetadataKeyEnum.VERSION));
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// assertEquals("1", parsed.getId().getVersionIdPart());
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// assertEquals(new InstantDt("2014-08-18T01:43:30Z"), parsed.getResourceMetadata().get(ResourceMetadataKeyEnum.UPDATED));
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// assertEquals("searchset", parsed.getType().getValue());
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// assertEquals(3, parsed.getTotalResults().getValue().intValue());
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// assertEquals("http://example.com/base", parsed.getLinkBase().getValue());
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// assertEquals("https://example.com/base/MedicationPrescription?patient=347&searchId=ff15fd40-ff71-4b48-b366-09c706bed9d0&page=2", parsed.getLinkNext().getValue());
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// assertEquals("https://example.com/base/MedicationPrescription?patient=347&_include=MedicationPrescription.medication", parsed.getLinkSelf().getValue());
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//
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// assertEquals(2, parsed.getEntries().size());
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//
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// MedicationPrescription p = (MedicationPrescription) parsed.getEntries().get(0).getResource();
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// assertEquals("Patient/347", p.getPatient().getReference().getValue());
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// assertEquals("2014-08-16T05:31:17Z", ResourceMetadataKeyEnum.UPDATED.get(p).getValueAsString());
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// assertEquals("http://example.com/base/MedicationPrescription/3123/_history/1", p.getId().getValue());
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// assertEquals("http://example.com/base/Bundle/example/_history/1", parsed.getId().getValue());
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// assertEquals("1", parsed.getResourceMetadata().get(ResourceMetadataKeyEnum.VERSION));
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// assertEquals("1", parsed.getId().getVersionIdPart());
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// assertEquals(new InstantDt("2014-08-18T01:43:30Z"),
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// parsed.getResourceMetadata().get(ResourceMetadataKeyEnum.UPDATED));
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// assertEquals("searchset", parsed.getType().getValue());
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// assertEquals(3, parsed.getTotalResults().getValue().intValue());
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// assertEquals("http://example.com/base", parsed.getLinkBase().getValue());
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// assertEquals("https://example.com/base/MedicationPrescription?patient=347&searchId=ff15fd40-ff71-4b48-b366-09c706bed9d0&page=2",
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// parsed.getLinkNext().getValue());
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// assertEquals("https://example.com/base/MedicationPrescription?patient=347&_include=MedicationPrescription.medication",
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// parsed.getLinkSelf().getValue());
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//
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// assertEquals(2, parsed.getEntries().size());
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//
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// MedicationPrescription p = (MedicationPrescription) parsed.getEntries().get(0).getResource();
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// assertEquals("Patient/347", p.getPatient().getReference().getValue());
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// assertEquals("2014-08-16T05:31:17Z", ResourceMetadataKeyEnum.UPDATED.get(p).getValueAsString());
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// assertEquals("http://example.com/base/MedicationPrescription/3123/_history/1", p.getId().getValue());
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String reencoded = ourCtx.newJsonParser().setPrettyPrint(true).encodeBundleToString(parsed);
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ourLog.info(reencoded);
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@ -483,15 +491,15 @@ public class JsonParserTest {
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String exp = expected.toString().replace("\\r\\n", "\\n"); // .replace("§", "§");
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String act = actual.toString().replace("\\r\\n", "\\n");
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exp=exp.replace(",\"ifNoneExist\":\"Patient?identifier=234234\"", "");
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exp = exp.replace(",\"ifNoneExist\":\"Patient?identifier=234234\"", "");
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ourLog.info("Expected: {}", exp);
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ourLog.info("Actual : {}", act);
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assertEquals(exp, act);
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}
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@Test
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public void testParseAndEncodeBundleNewStyle() throws Exception {
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String content = IOUtils.toString(JsonParserTest.class.getResourceAsStream("/bundle-example.json"));
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@ -532,24 +540,22 @@ public class JsonParserTest {
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}
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@Test
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public void testParseAndEncodeBundleWithDeletedEntry() {
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Patient res = new Patient();
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res.setId(new IdDt("Patient", "111", "222"));
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ResourceMetadataKeyEnum.DELETED_AT.put(res, new InstantDt("2011-01-01T12:12:22Z"));
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Bundle bundle = new Bundle();
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bundle.addResource(res, ourCtx, "http://foo/base");
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String actual = ourCtx.newJsonParser().encodeBundleToString(bundle);
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ourLog.info(actual);
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String expected = "{\"resourceType\":\"Bundle\",\"entry\":[{\"deleted\":{\"type\":\"Patient\",\"resourceId\":\"111\",\"versionId\":\"222\",\"instant\":\"2011-01-01T12:12:22Z\"}}]}";
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assertEquals(expected, actual);
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}
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}
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@ -1,11 +1,7 @@
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package ca.uhn.fhir.parser;
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import static org.hamcrest.Matchers.*;
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import static org.junit.Assert.assertArrayEquals;
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import static org.junit.Assert.assertEquals;
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import static org.junit.Assert.assertNull;
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import static org.junit.Assert.assertThat;
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import static org.junit.Assert.assertTrue;
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import static org.junit.Assert.*;
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import java.io.StringReader;
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import java.util.ArrayList;
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@ -37,6 +33,7 @@ import ca.uhn.fhir.model.dstu2.resource.Composition;
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import ca.uhn.fhir.model.dstu2.resource.Encounter;
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import ca.uhn.fhir.model.dstu2.resource.Medication;
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import ca.uhn.fhir.model.dstu2.resource.MedicationPrescription;
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import ca.uhn.fhir.model.dstu2.resource.Observation;
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import ca.uhn.fhir.model.dstu2.resource.Organization;
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import ca.uhn.fhir.model.dstu2.resource.Patient;
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import ca.uhn.fhir.model.dstu2.valueset.IdentifierUseEnum;
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@ -57,6 +54,44 @@ public class XmlParserTest {
|
|||
XMLUnit.setIgnoreWhitespace(true);
|
||||
}
|
||||
|
||||
/**
|
||||
* see #144 and #146
|
||||
*/
|
||||
@Test
|
||||
public void testParseContained() {
|
||||
|
||||
FhirContext c = FhirContext.forDstu2();
|
||||
IParser parser = c.newXmlParser().setPrettyPrint(true);
|
||||
|
||||
Observation o = new Observation();
|
||||
o.getCode().setText("obs text");
|
||||
|
||||
Patient p = new Patient();
|
||||
p.addName().addFamily("patient family");
|
||||
o.getSubject().setResource(p);
|
||||
|
||||
String enc = parser.encodeResourceToString(o);
|
||||
ourLog.info(enc);
|
||||
|
||||
//@formatter:off
|
||||
assertThat(enc, stringContainsInOrder(
|
||||
"<Observation xmlns=\"http://hl7.org/fhir\">",
|
||||
"<contained>",
|
||||
"<Patient xmlns=\"http://hl7.org/fhir\">",
|
||||
"<id value=\"1\"/>",
|
||||
"</contained>",
|
||||
"<reference value=\"#1\"/>"
|
||||
));
|
||||
//@formatter:on
|
||||
|
||||
o = parser.parseResource(Observation.class, enc);
|
||||
assertEquals("obs text", o.getCode().getText());
|
||||
|
||||
assertNotNull(o.getSubject().getResource());
|
||||
p = (Patient) o.getSubject().getResource();
|
||||
assertEquals("patient family", p.getNameFirstRep().getFamilyAsSingleString());
|
||||
}
|
||||
|
||||
/**
|
||||
* See #113
|
||||
*/
|
||||
|
|
|
|||
Loading…
Reference in New Issue