Add test for #682
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James Agnew
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package org.hl7.fhir.dstu3.validation;
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import static org.junit.Assert.assertEquals;
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import java.util.*;
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import javax.annotation.Nullable;
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import org.hl7.fhir.dstu3.context.IWorkerContext;
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import org.hl7.fhir.dstu3.hapi.validation.*;
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import org.hl7.fhir.dstu3.model.*;
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import org.hl7.fhir.dstu3.utils.StructureMapUtilities;
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import org.junit.*;
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import ca.uhn.fhir.context.FhirContext;
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public class StructureMapTests2 {
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/**
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* path to the files used to test the profile generator.
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*/
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String resourcePath = null;
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/**
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* The logger object.
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*/
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(StructureMapTests2.class);
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/**
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* The basic fhir context used to parse structure definitions.
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*/
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FhirContext context;
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/**
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* HapiFhirContext used when building strucutre map utilities.
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*/
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IWorkerContext hapiContext;
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/**
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* Used to validate definitions as well as add new structure definitions to a registry.
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*/
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PrePopulatedValidationSupport validationSupport;
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/**
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* Sets up the resource paths as well as create the contexts using a defalut validator to start with.
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*
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* @throws Exception
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*/
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@Before
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public void setUp() throws Exception {
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// resourcePath = getFileFromURL().getParent();
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if (this.context == null)
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this.context = FhirContext.forDstu3();
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}
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/**
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* See #682
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*/
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@Test
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@Ignore
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public void testMappingTransform() throws Exception {
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Map<String, StructureMap> maps = new HashMap<String, StructureMap>(); // Instantiate a hashmap for StructureMaps
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this.validationSupport = new PrePopulatedValidationSupport(); // Create Validation Instance
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for (StructureDefinition sd : new DefaultProfileValidationSupport().fetchAllStructureDefinitions(this.context)) { // Read in the default Structure Definitions into a validator that allows custom
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// declared structure definitions.
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this.validationSupport.addStructureDefinition(sd);
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}
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StructureDefinition sd1 = this.createTestStructure(); // Calls a method that constructs a comp
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this.validationSupport.addStructureDefinition(sd1); // Add custom structure to validation support.
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this.hapiContext = new HapiWorkerContext(this.context, this.validationSupport);// Init the Hapi Work
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StructureMap map = this.createTestStructuremap();
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maps.put(map.getUrl(), map);
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StructureMapUtilities scu = new StructureMapUtilities(hapiContext, maps, null, null);
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List<StructureDefinition> result = scu.analyse(null, map).getProfiles();
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assertEquals(1, result.size());
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ourLog.info(context.newXmlParser().setPrettyPrint(true).encodeResourceToString(result.get(0)));
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}
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public StructureDefinition createTestStructure() {
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StructureDefinition sd = new StructureDefinition();
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sd.setId("TestStructure");
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sd.setUrl("http://opencimi.org/structuredefinition/TestStructure");
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sd.setStatus(Enumerations.PublicationStatus.DRAFT);
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sd.setName("TestStructure");
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sd.setType("TestStructure");
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sd.setSnapshot(this.createTestSnapshot());
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sd.setDifferential(this.createTestDiff());
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sd.setKind(StructureDefinition.StructureDefinitionKind.LOGICAL);
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return sd;
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}
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public StructureDefinition.StructureDefinitionSnapshotComponent createTestSnapshot() {
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StructureDefinition.StructureDefinitionSnapshotComponent retVal = new StructureDefinition.StructureDefinitionSnapshotComponent();
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List<ElementDefinition> eList = new ArrayList<ElementDefinition>();
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ElementDefinition ed0 = new ElementDefinition();
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// ElementDefinition.ElementDefinitionBaseComponent base = new ElementDefinition.ElementDefinitionBaseComponent();
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// base.setId("http://hl7.org/fhir/StructureDefinition/Element");
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ed0.setId("TestStructure");
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ed0.setSliceName("TestStructure");
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ed0.setPath("TestStructure");
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// ed0.setBase(base);
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ed0.setMin(1);
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ed0.setMax("1");
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eList.add(ed0);
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ElementDefinition ed = new ElementDefinition();
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// ElementDefinition.ElementDefinitionBaseComponent base = new ElementDefinition.ElementDefinitionBaseComponent();
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// base.setId("http://hl7.org/fhir/StructureDefinition/Element");
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ed.setId("system");
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ed.setSliceName("system");
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ed.setPath("TestStructure.system");
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// ed.setBase(base);
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ed.setFixed(new UriType().setValue("HTTP://opencimi.org/structuredefinition/TestStructure.html#Debugging"));
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// ed.setType(this.createTypeRefList());
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ed.setMin(1);
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ed.setMax("1");
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eList.add(ed);
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retVal.setElement(eList);
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return retVal;
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}
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public StructureDefinition.StructureDefinitionDifferentialComponent createTestDiff() {
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StructureDefinition.StructureDefinitionDifferentialComponent retVal = new StructureDefinition.StructureDefinitionDifferentialComponent();
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List<ElementDefinition> eList = new ArrayList<ElementDefinition>();
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ElementDefinition ed0 = new ElementDefinition();
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// ElementDefinition.ElementDefinitionBaseComponent base = new ElementDefinition.ElementDefinitionBaseComponent();
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// base.setId("http://hl7.org/fhir/StructureDefinition/Element");
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ed0.setId("TestStructure");
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ed0.setSliceName("TestStructure");
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ed0.setPath("TestStructure");
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// ed0.setBase(base);
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ed0.setMin(1);
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ed0.setMax("1");
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eList.add(ed0);
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ElementDefinition ed = new ElementDefinition();
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// ElementDefinition.ElementDefinitionBaseComponent base = new ElementDefinition.ElementDefinitionBaseComponent();
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// base.setId("http://hl7.org/fhir/StructureDefinition/Element");
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ed.setId("system");
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ed.setSliceName("system");
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ed.setPath("TestStructure.system");
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// ed.setBase(base);
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ed.setFixed(new UriType().setValue("HTTP://opencimi.org/structuredefinition/TestStructure.html#Debugging"));
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// ed.setType(this.createTypeRefList());
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eList.add(ed);
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retVal.setElement(eList);
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return retVal;
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}
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public StructureMap createTestStructuremap() throws Exception {
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StructureMap retMap = new StructureMap();
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retMap.setUrl("http://opencimi.org/structuremap/testtransform");
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retMap.setName("TestTransform");
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retMap.setStatus(Enumerations.PublicationStatus.DRAFT);
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retMap.setStructure(this.createMapStructureList());
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retMap.setGroup(this.buildTestGroup());
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return retMap;
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}
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public List<StructureMap.StructureMapStructureComponent> createMapStructureList() {
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List<StructureMap.StructureMapStructureComponent> retVal = new ArrayList<StructureMap.StructureMapStructureComponent>();
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StructureMap.StructureMapStructureComponent source = new StructureMap.StructureMapStructureComponent();
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StructureMap.StructureMapStructureComponent target = new StructureMap.StructureMapStructureComponent();
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source.setUrl("http://opencimi.org/structuredefinition/TestStructure");
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source.setMode(StructureMap.StructureMapModelMode.SOURCE);
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target.setUrl("http://hl7.org/fhir/StructureDefinition/Coding");
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target.setMode(StructureMap.StructureMapModelMode.TARGET);
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retVal.add(source);
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retVal.add(target);
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return retVal;
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}
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public List<StructureMap.StructureMapGroupComponent> buildTestGroup() throws Exception {
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List<StructureMap.StructureMapGroupComponent> retVal = new ArrayList<StructureMap.StructureMapGroupComponent>();
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StructureMap.StructureMapGroupComponent group = new StructureMap.StructureMapGroupComponent();
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group.setName("TestStructureToCoding");
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group.setTypeMode(StructureMap.StructureMapGroupTypeMode.TYPEANDTYPES);
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group.setInput(this.buildTestInput());
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group.setRule(this.buildTestRules());
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retVal.add(group);
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return retVal;
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}
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public List<StructureMap.StructureMapGroupInputComponent> buildTestInput() {
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List<StructureMap.StructureMapGroupInputComponent> retVal = new ArrayList<StructureMap.StructureMapGroupInputComponent>();
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StructureMap.StructureMapGroupInputComponent sourceIn = new StructureMap.StructureMapGroupInputComponent();
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StructureMap.StructureMapGroupInputComponent targetIn = new StructureMap.StructureMapGroupInputComponent();
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sourceIn.setName("source");
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sourceIn.setType("TestStructure");
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sourceIn.setMode(StructureMap.StructureMapInputMode.SOURCE);
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targetIn.setName("target");
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targetIn.setType("http://hl7.org/fhir/StructureDefinition/Coding");
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targetIn.setMode(StructureMap.StructureMapInputMode.TARGET);
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retVal.add(sourceIn);
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retVal.add(targetIn);
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return retVal;
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}
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public List<StructureMap.StructureMapGroupRuleComponent> buildTestRules() throws Exception {
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List<StructureMap.StructureMapGroupRuleComponent> retVal = new ArrayList<StructureMap.StructureMapGroupRuleComponent>();
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StructureMap.StructureMapGroupRuleComponent codingSystem = new StructureMap.StructureMapGroupRuleComponent();
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StructureMap.StructureMapGroupRuleComponent codingExtension = new StructureMap.StructureMapGroupRuleComponent();
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codingSystem.setName("Coding.System");
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codingSystem.setSource(this.buildSourceList(new StructureMap.StructureMapGroupRuleSourceComponent[] {
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this.buildSource("source", "system", "v", null, null, null)
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}));
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codingSystem.setTarget(this.buildTargetList(new StructureMap.StructureMapGroupRuleTargetComponent[] {
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this.buildTarget("target", "system", null, StructureMap.StructureMapTransform.COPY, new TargetParam[] { new TargetParam("Id", "v") })
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}));
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codingExtension.setName("Coding.Extension");
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codingExtension.setSource(this.buildSourceList(new StructureMap.StructureMapGroupRuleSourceComponent[] {
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this.buildSource("source", "system", "v", null, null, null)
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}));
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codingExtension.setTarget(this.buildTargetList(new StructureMap.StructureMapGroupRuleTargetComponent[] {
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this.buildTarget("target", "extension", "ex", null, new TargetParam[] { new TargetParam("", "") }),
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this.buildTarget("ex", "url", null, StructureMap.StructureMapTransform.COPY, new TargetParam[] { new TargetParam("Id", "v") }),
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this.buildTarget("ex", "value", null, StructureMap.StructureMapTransform.COPY, new TargetParam[] { new TargetParam("String", "v") })
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}));
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retVal.add(codingSystem);
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retVal.add(codingExtension);
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return retVal;
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}
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public List<StructureMap.StructureMapGroupRuleSourceComponent> buildSourceList(StructureMap.StructureMapGroupRuleSourceComponent[] sources) {
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List<StructureMap.StructureMapGroupRuleSourceComponent> retVal = new ArrayList<StructureMap.StructureMapGroupRuleSourceComponent>();
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retVal.addAll(Arrays.asList(sources));
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return retVal;
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}
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public StructureMap.StructureMapGroupRuleSourceComponent buildSource(String context, @Nullable String element, @Nullable String variable, @Nullable String type, @Nullable Integer min,
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@Nullable String max) {
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StructureMap.StructureMapGroupRuleSourceComponent retVal = new StructureMap.StructureMapGroupRuleSourceComponent();
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retVal.setContext(context);
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if (element != null)
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retVal.setElement(element);
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if (variable != null)
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retVal.setVariable(variable);
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if (type != null)
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retVal.setType(type);
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if (min != null)
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retVal.setMin(min);
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if (max != null)
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retVal.setMax(max);
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return retVal;
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}
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public List<StructureMap.StructureMapGroupRuleTargetComponent> buildTargetList(StructureMap.StructureMapGroupRuleTargetComponent[] sources) {
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List<StructureMap.StructureMapGroupRuleTargetComponent> retVal = new ArrayList<StructureMap.StructureMapGroupRuleTargetComponent>();
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retVal.addAll(Arrays.asList(sources));
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return retVal;
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}
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public StructureMap.StructureMapGroupRuleTargetComponent buildTarget(@Nullable String context, @Nullable String element, @Nullable String variable,
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@Nullable StructureMap.StructureMapTransform transform, @Nullable TargetParam[] params) throws Exception {
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StructureMap.StructureMapGroupRuleTargetComponent retVal = new StructureMap.StructureMapGroupRuleTargetComponent();
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if (context != null)
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retVal.setContext(context);
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if (element != null)
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retVal.setElement(element);
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if (variable != null)
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retVal.setVariable(variable);
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if (transform != null)
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retVal.setTransform(transform);
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if (params != null) {
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if (params.length > 0)
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retVal.setParameter(this.constructParameters(params));
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}
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return retVal;
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}
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public List<StructureMap.StructureMapGroupRuleTargetParameterComponent> constructParameters(TargetParam[] params) throws Exception {
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List<StructureMap.StructureMapGroupRuleTargetParameterComponent> parameterComponents = new ArrayList<StructureMap.StructureMapGroupRuleTargetParameterComponent>();
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for (TargetParam tp : params) {
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if (tp.getType() == "Id") // TODO: Convert TypeParam.Type into an Enum.
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parameterComponents.add(new StructureMap.StructureMapGroupRuleTargetParameterComponent().setValue(new IdType().setValue(tp.getValue())));
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else if (tp.getType() == "String")
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parameterComponents.add(new StructureMap.StructureMapGroupRuleTargetParameterComponent().setValue((new StringType().setValue(tp.getValue()))));
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else if (tp.getType() == "Boolean") {
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boolean bValue = Boolean.getBoolean(tp.getValue());
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parameterComponents.add(new StructureMap.StructureMapGroupRuleTargetParameterComponent().setValue(new BooleanType().setValue(bValue)));
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} else if (tp.getType() == "Integer") {
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int iValue = Integer.getInteger(tp.getValue());
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parameterComponents.add(new StructureMap.StructureMapGroupRuleTargetParameterComponent().setValue(new IntegerType().setValue(iValue)));
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} else if (tp.getType() == "Decimal") {
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long lValue = Long.getLong(tp.getValue());
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parameterComponents.add(new StructureMap.StructureMapGroupRuleTargetParameterComponent().setValue(new DecimalType(lValue)));
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}
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}
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return parameterComponents;
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}
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public class TargetParam {
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public TargetParam(String type, String value) {
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this.type = type;
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this.value = value;
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}
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private String type;
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private String value;
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public String getType() {
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return type;
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}
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public void setType(String type) {
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this.type = type;
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}
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public String getValue() {
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return value;
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}
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public void setValue(String value) {
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this.value = value;
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}
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}
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}
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