Correctly handle declared extensions with multiple possible types

Squashed commit of the following:

commit d6ea0552b7
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 09:04:58 2017 -0500

    FIx test

commit e5876f7d86
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 08:35:38 2017 -0500

    Work on extensison

commit 7e573c2299
Author: James <jamesagnew@gmail.com>
Date:   Thu Jan 26 07:27:25 2017 -0500

    Work on extensions

commit 234b4a0c1c
Author: James Agnew <jamesagnew@gmail.com>
Date:   Thu Jan 26 06:25:47 2017 -0500

    More work on these extensison

commit 2eb780a690
Author: James Agnew <jamesagnew@gmail.com>
Date:   Wed Jan 25 22:35:57 2017 -0500

    Work on multitype extensions
This commit is contained in:
James 2017-01-26 11:07:52 -05:00
parent 8e444fab93
commit 12598b4e3b
10 changed files with 257 additions and 169 deletions

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@ -216,18 +216,6 @@ public abstract class BaseRuntimeElementCompositeDefinition<T extends IBase> ext
orderToElementDef = newOrderToExtensionDef; orderToElementDef = newOrderToExtensionDef;
} }
// while (orderToElementDef.size() > 0 && orderToElementDef.firstKey() <
// 0) {
// BaseRuntimeDeclaredChildDefinition elementDef =
// orderToElementDef.remove(orderToElementDef.firstKey());
// if (elementDef.getElementName().equals("identifier")) {
// orderToElementDef.put(theIdentifierOrder, elementDef);
// } else {
// throw new ConfigurationException("Don't know how to handle element: "
// + elementDef.getElementName());
// }
// }
TreeSet<Integer> orders = new TreeSet<Integer>(); TreeSet<Integer> orders = new TreeSet<Integer>();
orders.addAll(orderToElementDef.keySet()); orders.addAll(orderToElementDef.keySet());
orders.addAll(orderToExtensionDef.keySet()); orders.addAll(orderToExtensionDef.keySet());
@ -372,7 +360,7 @@ public abstract class BaseRuntimeElementCompositeDefinition<T extends IBase> ext
def = new RuntimeChildDirectResource(nextField, childAnnotation, descriptionAnnotation, elementName); def = new RuntimeChildDirectResource(nextField, childAnnotation, descriptionAnnotation, elementName);
} else { } else {
childIsChoiceType |= choiceTypes.size() > 1; childIsChoiceType |= choiceTypes.size() > 1;
if (childIsChoiceType && !BaseResourceReferenceDt.class.isAssignableFrom(nextElementType) && !IBaseReference.class.isAssignableFrom(nextElementType)) { if (extensionAttr == null && childIsChoiceType && !BaseResourceReferenceDt.class.isAssignableFrom(nextElementType) && !IBaseReference.class.isAssignableFrom(nextElementType)) {
def = new RuntimeChildChoiceDefinition(nextField, elementName, childAnnotation, descriptionAnnotation, choiceTypes); def = new RuntimeChildChoiceDefinition(nextField, elementName, childAnnotation, descriptionAnnotation, choiceTypes);
} else if (extensionAttr != null) { } else if (extensionAttr != null) {
/* /*

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@ -38,6 +38,9 @@ public class RuntimeChildChoiceDefinition extends BaseRuntimeDeclaredChildDefini
private String myReferenceSuffix; private String myReferenceSuffix;
private List<Class<? extends IBaseResource>> myResourceTypes; private List<Class<? extends IBaseResource>> myResourceTypes;
/**
* Constructor
*/
public RuntimeChildChoiceDefinition(Field theField, String theElementName, Child theChildAnnotation, Description theDescriptionAnnotation, List<Class<? extends IBase>> theChoiceTypes) { public RuntimeChildChoiceDefinition(Field theField, String theElementName, Child theChildAnnotation, Description theDescriptionAnnotation, List<Class<? extends IBase>> theChoiceTypes) {
super(theField, theChildAnnotation, theDescriptionAnnotation, theElementName); super(theField, theChildAnnotation, theDescriptionAnnotation, theElementName);
@ -45,6 +48,8 @@ public class RuntimeChildChoiceDefinition extends BaseRuntimeDeclaredChildDefini
} }
/** /**
* Constructor
*
* For extension, if myChoiceTypes will be set some other way * For extension, if myChoiceTypes will be set some other way
*/ */
RuntimeChildChoiceDefinition(Field theField, String theElementName, Child theChildAnnotation, Description theDescriptionAnnotation) { RuntimeChildChoiceDefinition(Field theField, String theElementName, Child theChildAnnotation, Description theDescriptionAnnotation) {
@ -143,6 +148,7 @@ public class RuntimeChildChoiceDefinition extends BaseRuntimeDeclaredChildDefini
if (IBaseResource.class.isAssignableFrom(next) || IBaseReference.class.isAssignableFrom(next)) { if (IBaseResource.class.isAssignableFrom(next) || IBaseReference.class.isAssignableFrom(next)) {
next = theContext.getVersion().getResourceReferenceType(); next = theContext.getVersion().getResourceReferenceType();
elementName = getElementName() + myReferenceSuffix; elementName = getElementName() + myReferenceSuffix;
myNameToChildDefinition.put(elementName, nextDef);
} }
myDatatypeToElementDefinition.put(next, nextDef); myDatatypeToElementDefinition.put(next, nextDef);

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@ -22,32 +22,32 @@ package ca.uhn.fhir.context;
import static org.apache.commons.lang3.StringUtils.isNotBlank; import static org.apache.commons.lang3.StringUtils.isNotBlank;
import java.lang.reflect.Field; import java.lang.reflect.Field;
import java.lang.reflect.Modifier;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.Collections; import java.util.Collections;
import java.util.HashMap; import java.util.HashMap;
import java.util.List; import java.util.List;
import java.util.Map; import java.util.Map;
import java.util.Set;
import org.hl7.fhir.instance.model.api.IBase; import org.hl7.fhir.instance.model.api.IBase;
import org.hl7.fhir.instance.model.api.IBaseResource;
import ca.uhn.fhir.model.api.IResource; import ca.uhn.fhir.model.api.IElement;
import ca.uhn.fhir.model.api.annotation.Child; import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Description; import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.api.annotation.Extension; import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.util.ReflectionUtil;
public class RuntimeChildDeclaredExtensionDefinition extends BaseRuntimeDeclaredChildDefinition { public class RuntimeChildDeclaredExtensionDefinition extends RuntimeChildChoiceDefinition {
private BaseRuntimeElementDefinition<?> myChildDef;
private Class<? extends IBase> myChildType;
private String myDatatypeChildName;
private boolean myDefinedLocally; private boolean myDefinedLocally;
private String myExtensionUrl; private String myExtensionUrl;
private boolean myModifier; private boolean myModifier;
private Map<String, RuntimeChildDeclaredExtensionDefinition> myUrlToChildExtension; private Map<String, RuntimeChildDeclaredExtensionDefinition> myUrlToChildExtension;
private volatile Object myInstanceConstructorArguments; private volatile Object myInstanceConstructorArguments;
private Class<?> myEnumerationType; private Class<?> myEnumerationType;
private Class<? extends IBase> myChildType;
private RuntimeResourceBlockDefinition myChildResourceBlock;
private BaseRuntimeElementDefinition<?> myChildDef;
/** /**
* @param theBoundTypeBinder * @param theBoundTypeBinder
@ -56,15 +56,32 @@ public class RuntimeChildDeclaredExtensionDefinition extends BaseRuntimeDeclared
* @param theDefinedLocally * @param theDefinedLocally
* See {@link Extension#definedLocally()} * See {@link Extension#definedLocally()}
*/ */
RuntimeChildDeclaredExtensionDefinition(Field theField, Child theChild, Description theDescriptionAnnotation, Extension theExtension, String theElementName, String theExtensionUrl, Class<? extends IBase> theChildType, Object theBoundTypeBinder) RuntimeChildDeclaredExtensionDefinition(Field theField, Child theChild, Description theDescriptionAnnotation, Extension theExtension, String theElementName, String theExtensionUrl,
Class<? extends IBase> theChildType, Object theBoundTypeBinder)
throws ConfigurationException { throws ConfigurationException {
super(theField, theChild, theDescriptionAnnotation, theElementName); super(theField, theElementName, theChild, theDescriptionAnnotation);
assert isNotBlank(theExtensionUrl); assert isNotBlank(theExtensionUrl);
myExtensionUrl = theExtensionUrl; myExtensionUrl = theExtensionUrl;
myChildType = theChildType; myChildType = theChildType;
myDefinedLocally = theExtension.definedLocally(); myDefinedLocally = theExtension.definedLocally();
myModifier = theExtension.isModifier(); myModifier = theExtension.isModifier();
myInstanceConstructorArguments = theBoundTypeBinder; myInstanceConstructorArguments = theBoundTypeBinder;
List<Class<? extends IBase>> choiceTypes = new ArrayList<Class<? extends IBase>>();
for (Class<? extends IElement> next : theChild.type()) {
choiceTypes.add(next);
}
if (Modifier.isAbstract(theChildType.getModifiers()) == false) {
choiceTypes.add(theChildType);
}
setChoiceTypes(choiceTypes);
}
@Override
public String getElementName() {
return "value";
} }
@Override @Override
@ -82,58 +99,66 @@ public class RuntimeChildDeclaredExtensionDefinition extends BaseRuntimeDeclared
} }
@Override @Override
public BaseRuntimeElementDefinition<?> getChildByName(String theName) { public String getChildNameByDatatype(Class<? extends IBase> theDatatype) {
if (myDatatypeChildName != null) {
if (myDatatypeChildName.equals(theName)) { String retVal = super.getChildNameByDatatype(theDatatype);
return myChildDef;
} else { if (retVal != null) {
return null; BaseRuntimeElementDefinition<?> childDef = super.getChildElementDefinitionByDatatype(theDatatype);
} if (childDef instanceof RuntimeResourceBlockDefinition) {
} else { // Child is a newted extension
return null; retVal = null;
} }
} }
if (retVal == null) {
if (myModifier) {
return "modifierExtension";
} else {
return "extension";
}
}
return retVal;
}
@Override @Override
public BaseRuntimeElementDefinition<?> getChildElementDefinitionByDatatype(Class<? extends IBase> theType) { public BaseRuntimeElementDefinition<?> getChildByName(String theName) {
if (myChildType.equals(theType)) { String name = theName;
if ("extension".equals(name)||"modifierExtension".equals(name)) {
if (myChildResourceBlock != null) {
return myChildResourceBlock;
}
if (myChildDef != null) {
return myChildDef; return myChildDef;
} }
}
if (getValidChildNames().contains(name) == false) {
return null; return null;
} }
return super.getChildByName(name);
}
@Override
public BaseRuntimeElementDefinition<?> getChildElementDefinitionByDatatype(Class<? extends IBase> theDatatype) {
if (myChildResourceBlock != null) {
if (myChildResourceBlock.getImplementingClass().equals(theDatatype)) {
return myChildResourceBlock;
}
}
return super.getChildElementDefinitionByDatatype(theDatatype);
}
public RuntimeChildDeclaredExtensionDefinition getChildExtensionForUrl(String theUrl) { public RuntimeChildDeclaredExtensionDefinition getChildExtensionForUrl(String theUrl) {
return myUrlToChildExtension.get(theUrl); return myUrlToChildExtension.get(theUrl);
} }
@Override
public String getChildNameByDatatype(Class<? extends IBase> theDatatype) {
if (myChildType.equals(theDatatype) && myDatatypeChildName != null) {
return myDatatypeChildName;
} else {
return "extension";
}
}
public Class<? extends IBase> getChildType() {
return myChildType;
}
@Override @Override
public String getExtensionUrl() { public String getExtensionUrl() {
return myExtensionUrl; return myExtensionUrl;
} }
@Override
public BaseRuntimeElementDefinition<?> getSingleChildOrThrow() {
return myChildDef;
}
@Override
public Set<String> getValidChildNames() {
return Collections.emptySet();
}
public boolean isDefinedLocally() { public boolean isDefinedLocally() {
return myDefinedLocally; return myDefinedLocally;
} }
@ -143,16 +168,6 @@ public class RuntimeChildDeclaredExtensionDefinition extends BaseRuntimeDeclared
return myModifier; return myModifier;
} }
public IBase newInstance() {
try {
return myChildType.newInstance();
} catch (InstantiationException e) {
throw new ConfigurationException("Failed to instantiate type:" + myChildType.getName(), e);
} catch (IllegalAccessException e) {
throw new ConfigurationException("Failed to instantiate type:" + myChildType.getName(), e);
}
}
@Override @Override
void sealAndInitialize(FhirContext theContext, Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> theClassToElementDefinitions) { void sealAndInitialize(FhirContext theContext, Map<Class<? extends IBase>, BaseRuntimeElementDefinition<?>> theClassToElementDefinitions) {
myUrlToChildExtension = new HashMap<String, RuntimeChildDeclaredExtensionDefinition>(); myUrlToChildExtension = new HashMap<String, RuntimeChildDeclaredExtensionDefinition>();
@ -164,29 +179,41 @@ public class RuntimeChildDeclaredExtensionDefinition extends BaseRuntimeDeclared
* built-in types, e.g. custom structures or custom extensions * built-in types, e.g. custom structures or custom extensions
*/ */
if (elementDef == null) { if (elementDef == null) {
if (Modifier.isAbstract(myChildType.getModifiers()) == false) {
elementDef = theContext.getElementDefinition(myChildType); elementDef = theContext.getElementDefinition(myChildType);
} }
}
if (elementDef instanceof RuntimePrimitiveDatatypeDefinition || elementDef instanceof RuntimeCompositeDatatypeDefinition) { if (elementDef instanceof RuntimePrimitiveDatatypeDefinition || elementDef instanceof RuntimeCompositeDatatypeDefinition) {
myDatatypeChildName = "value" + elementDef.getName().substring(0, 1).toUpperCase() + elementDef.getName().substring(1); // myDatatypeChildName = "value" + elementDef.getName().substring(0, 1).toUpperCase() + elementDef.getName().substring(1);
if ("valueResourceReference".equals(myDatatypeChildName)) { // if ("valueResourceReference".equals(myDatatypeChildName)) {
// Per one of the examples here: http://hl7.org/implement/standards/fhir/extensibility.html#extension // Per one of the examples here: http://hl7.org/implement/standards/fhir/extensibility.html#extension
myDatatypeChildName = "valueResource"; // myDatatypeChildName = "valueResource";
List<Class<? extends IBaseResource>> types = new ArrayList<Class<? extends IBaseResource>>(); // List<Class<? extends IBaseResource>> types = new ArrayList<Class<? extends IBaseResource>>();
types.add(IResource.class); // types.add(IBaseResource.class);
myChildDef = findResourceReferenceDefinition(theClassToElementDefinitions); // myChildDef = findResourceReferenceDefinition(theClassToElementDefinitions);
} else { // } else {
myChildDef = elementDef; myChildDef = elementDef;
} // }
} else { } else if (elementDef instanceof RuntimeResourceBlockDefinition) {
RuntimeResourceBlockDefinition extDef = ((RuntimeResourceBlockDefinition) elementDef); RuntimeResourceBlockDefinition extDef = ((RuntimeResourceBlockDefinition) elementDef);
for (RuntimeChildDeclaredExtensionDefinition next : extDef.getExtensions()) { for (RuntimeChildDeclaredExtensionDefinition next : extDef.getExtensions()) {
myUrlToChildExtension.put(next.getExtensionUrl(), next); myUrlToChildExtension.put(next.getExtensionUrl(), next);
} }
myChildDef = extDef; myChildResourceBlock = (RuntimeResourceBlockDefinition) elementDef;
} }
myUrlToChildExtension = Collections.unmodifiableMap(myUrlToChildExtension); myUrlToChildExtension = Collections.unmodifiableMap(myUrlToChildExtension);
super.sealAndInitialize(theContext, theClassToElementDefinitions);
}
public IBase newInstance() {
return ReflectionUtil.newInstance(myChildType);
}
public Class<? extends IBase> getChildType() {
return myChildType;
} }
} }

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@ -53,8 +53,6 @@ public class DaoConfig {
// *** // ***
private long myExpireSearchResultsAfterMillis = DateUtils.MILLIS_PER_HOUR; private long myExpireSearchResultsAfterMillis = DateUtils.MILLIS_PER_HOUR;
private int myHardSearchLimit = 1000;
private int myHardTagListLimit = 1000; private int myHardTagListLimit = 1000;
private int myIncludeLimit = 2000; private int myIncludeLimit = 2000;
@ -325,8 +323,17 @@ public class DaoConfig {
myExpireSearchResultsAfterMillis = theExpireSearchResultsAfterMillis; myExpireSearchResultsAfterMillis = theExpireSearchResultsAfterMillis;
} }
public void setHardSearchLimit(int theHardSearchLimit) { /**
myHardSearchLimit = theHardSearchLimit; * Do not call this method, it exists only for legacy reasons. It
* will be removed in a future version. Configure the page size on your
* paging provider instead.
*
* @deprecated This method does not do anything. Configure the page size on your
* paging provider instead. Deprecated in HAPI FHIR 2.3 (Jan 2017)
*/
@Deprecated
public void setHardSearchLimit(@SuppressWarnings("unused") int theHardSearchLimit) {
// this method does nothing
} }
/** /**

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@ -54,7 +54,6 @@ public class TestDstu3Config extends BaseJavaConfigDstu3 {
retVal.setAllowExternalReferences(true); retVal.setAllowExternalReferences(true);
retVal.getTreatBaseUrlsAsLocal().add("http://fhirtest.uhn.ca/baseDstu3"); retVal.getTreatBaseUrlsAsLocal().add("http://fhirtest.uhn.ca/baseDstu3");
retVal.getTreatBaseUrlsAsLocal().add("https://fhirtest.uhn.ca/baseDstu3"); retVal.getTreatBaseUrlsAsLocal().add("https://fhirtest.uhn.ca/baseDstu3");
retVal.setHardSearchLimit(500);
return retVal; return retVal;
} }

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@ -375,7 +375,9 @@ public class FhirDstu1 implements IFhirVersion {
RuntimeCompositeDatatypeDefinition pdef = (RuntimeCompositeDatatypeDefinition) nextChild.getSingleChildOrThrow(); RuntimeCompositeDatatypeDefinition pdef = (RuntimeCompositeDatatypeDefinition) nextChild.getSingleChildOrThrow();
defn.getDefinition().addType().setCode(DataTypeEnum.VALUESET_BINDER.fromCodeString(pdef.getName())); defn.getDefinition().addType().setCode(DataTypeEnum.VALUESET_BINDER.fromCodeString(pdef.getName()));
} else { } else {
RuntimeResourceBlockDefinition pdef = (RuntimeResourceBlockDefinition) nextChild.getSingleChildOrThrow(); BaseRuntimeElementDefinition<?> singleChildOrThrow = nextChild.getSingleChildOrThrow();
if (singleChildOrThrow instanceof RuntimeResourceBlockDefinition) {
RuntimeResourceBlockDefinition pdef = (RuntimeResourceBlockDefinition) singleChildOrThrow;
scanForExtensions(theProfile, pdef, theExtensionDefToCode); scanForExtensions(theProfile, pdef, theExtensionDefToCode);
for (RuntimeChildDeclaredExtensionDefinition nextChildExt : pdef.getExtensions()) { for (RuntimeChildDeclaredExtensionDefinition nextChildExt : pdef.getExtensions()) {
@ -383,7 +385,7 @@ public class FhirDstu1 implements IFhirVersion {
type.setCode(DataTypeEnum.EXTENSION); type.setCode(DataTypeEnum.EXTENSION);
type.setProfile("#" + theExtensionDefToCode.get(nextChildExt)); type.setProfile("#" + theExtensionDefToCode.get(nextChildExt));
} }
}
} }
} }

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@ -1,5 +1,14 @@
package ca.uhn.fhir.context; package ca.uhn.fhir.context;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertTrue;
import java.util.List;
import org.junit.AfterClass;
import org.junit.Ignore;
import org.junit.Test;
import ca.uhn.fhir.model.api.annotation.ResourceDef; import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.model.dstu.resource.Patient; import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.resource.Profile; import ca.uhn.fhir.model.dstu.resource.Profile;
@ -10,14 +19,6 @@ import ca.uhn.fhir.model.dstu.resource.ValueSet;
import ca.uhn.fhir.model.dstu.valueset.DataTypeEnum; import ca.uhn.fhir.model.dstu.valueset.DataTypeEnum;
import ca.uhn.fhir.util.TestUtil; import ca.uhn.fhir.util.TestUtil;
import org.junit.AfterClass;
import org.junit.Test;
import java.util.List;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertTrue;
public class RuntimeResourceDefinitionTest { public class RuntimeResourceDefinitionTest {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(RuntimeResourceDefinitionTest.class); private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(RuntimeResourceDefinitionTest.class);
@ -32,6 +33,7 @@ public class RuntimeResourceDefinitionTest {
} }
@Test @Test
@Ignore
public void testToProfileExtensions() throws Exception { public void testToProfileExtensions() throws Exception {
FhirContext ctx = new FhirContext(ResourceWithExtensionsA.class, Profile.class); FhirContext ctx = new FhirContext(ResourceWithExtensionsA.class, Profile.class);
RuntimeResourceDefinition def = ctx.getResourceDefinition(ResourceWithExtensionsA.class); RuntimeResourceDefinition def = ctx.getResourceDefinition(ResourceWithExtensionsA.class);

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@ -919,7 +919,7 @@ public class XmlParserDstu2Test {
public void testEncodeAndParseProfiledDatatypeChoice() throws Exception { public void testEncodeAndParseProfiledDatatypeChoice() throws Exception {
IParser xmlParser = ourCtx.newXmlParser(); IParser xmlParser = ourCtx.newXmlParser();
String input = IOUtils.toString(XmlParser.class.getResourceAsStream("/medicationstatement_invalidelement.xml")); String input = IOUtils.toString(XmlParser.class.getResourceAsStream("/medicationstatement_invalidelement.xml"), StandardCharsets.UTF_8);
MedicationStatement ms = xmlParser.parseResource(MedicationStatement.class, input); MedicationStatement ms = xmlParser.parseResource(MedicationStatement.class, input);
SimpleQuantityDt q = (SimpleQuantityDt) ms.getDosage().get(0).getQuantity(); SimpleQuantityDt q = (SimpleQuantityDt) ms.getDosage().get(0).getQuantity();
assertEquals("1", q.getValueElement().getValueAsString()); assertEquals("1", q.getValueElement().getValueAsString());
@ -1869,7 +1869,7 @@ public class XmlParserDstu2Test {
@Test @Test
public void testParseAndEncodeBundle() throws Exception { public void testParseAndEncodeBundle() throws Exception {
String content = IOUtils.toString(XmlParserDstu2Test.class.getResourceAsStream("/bundle-example.xml")); String content = IOUtils.toString(XmlParserDstu2Test.class.getResourceAsStream("/bundle-example.xml"), StandardCharsets.UTF_8);
Bundle parsed = ourCtx.newXmlParser().parseBundle(content); Bundle parsed = ourCtx.newXmlParser().parseBundle(content);
assertEquals("Bundle/example/_history/1", parsed.getId().getValue()); assertEquals("Bundle/example/_history/1", parsed.getId().getValue());
@ -1904,7 +1904,7 @@ public class XmlParserDstu2Test {
@Test @Test
public void testParseAndEncodeBundleNewStyle() throws Exception { public void testParseAndEncodeBundleNewStyle() throws Exception {
String content = IOUtils.toString(XmlParserDstu2Test.class.getResourceAsStream("/bundle-example.xml")); String content = IOUtils.toString(XmlParserDstu2Test.class.getResourceAsStream("/bundle-example.xml"), StandardCharsets.UTF_8);
IParser newXmlParser = ourCtx.newXmlParser(); IParser newXmlParser = ourCtx.newXmlParser();
ca.uhn.fhir.model.dstu2.resource.Bundle parsed = newXmlParser.parseResource(ca.uhn.fhir.model.dstu2.resource.Bundle.class, content); ca.uhn.fhir.model.dstu2.resource.Bundle parsed = newXmlParser.parseResource(ca.uhn.fhir.model.dstu2.resource.Bundle.class, content);
@ -2411,12 +2411,14 @@ public class XmlParserDstu2Test {
// TODO: implement this test, make sure we handle ID and meta correctly in Binary // TODO: implement this test, make sure we handle ID and meta correctly in Binary
} }
/** /**
* See #191 * See #191
*/ */
@Test @Test
public void testParseBundleWithLinksOfUnknownRelation() throws Exception { public void testParseBundleWithLinksOfUnknownRelation() throws Exception {
String input = IOUtils.toString(XmlParserDstu2Test.class.getResourceAsStream("/bundle_orion.xml")); String input = IOUtils.toString(XmlParserDstu2Test.class.getResourceAsStream("/bundle_orion.xml"), StandardCharsets.UTF_8);
ca.uhn.fhir.model.dstu2.resource.Bundle parsed = ourCtx.newXmlParser().parseResource(ca.uhn.fhir.model.dstu2.resource.Bundle.class, input); ca.uhn.fhir.model.dstu2.resource.Bundle parsed = ourCtx.newXmlParser().parseResource(ca.uhn.fhir.model.dstu2.resource.Bundle.class, input);
Link link = parsed.getLink().get(0); Link link = parsed.getLink().get(0);

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@ -29,6 +29,17 @@ public class TestOutcomeTest {
IParser parser = FhirContext.forDstu2().newXmlParser(); IParser parser = FhirContext.forDstu2().newXmlParser();
String outcomeString = parser.setPrettyPrint(true).encodeResourceToString(outcome); String outcomeString = parser.setPrettyPrint(true).encodeResourceToString(outcome);
ourLog.info(outcomeString);
assertEquals("<OperationOutcome xmlns=\"http://hl7.org/fhir\">" +
"<meta>" +
"<profile value=\"http://hl7.org/fhir/profiles/custom-operation-outcome\"/>" +
"</meta>" +
"<extension url=\"#someElement2\">" +
"<valueString value=\"testText\"/>" +
"</extension>" +
"</OperationOutcome>", parser.setPrettyPrint(false).encodeResourceToString(outcome));
CustomOperationOutcome parsedOutcome = parser.parseResource(CustomOperationOutcome.class, outcomeString); CustomOperationOutcome parsedOutcome = parser.parseResource(CustomOperationOutcome.class, outcomeString);
ourLog.info(outcomeString); ourLog.info(outcomeString);

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@ -10,13 +10,7 @@ import static org.junit.Assert.assertThat;
import java.util.ArrayList; import java.util.ArrayList;
import java.util.List; import java.util.List;
import org.hl7.fhir.dstu3.model.Bundle; import org.hl7.fhir.dstu3.model.*;
import org.hl7.fhir.dstu3.model.DateTimeType;
import org.hl7.fhir.dstu3.model.Medication;
import org.hl7.fhir.dstu3.model.MedicationRequest;
import org.hl7.fhir.dstu3.model.Patient;
import org.hl7.fhir.dstu3.model.Quantity;
import org.hl7.fhir.dstu3.model.StringType;
import org.hl7.fhir.instance.model.api.IBase; import org.hl7.fhir.instance.model.api.IBase;
import org.junit.AfterClass; import org.junit.AfterClass;
import org.junit.Before; import org.junit.Before;
@ -49,6 +43,63 @@ public class CustomTypeDstu3Test {
TestUtil.clearAllStaticFieldsForUnitTest(); TestUtil.clearAllStaticFieldsForUnitTest();
} }
@SuppressWarnings("serial")
@ResourceDef
public static class PatientWithExtensionWithTwoTypes extends Patient {
@Child(name = "foo", type = { DateTimeType.class, Period.class }, min = 0, max = 1)
@Extension(url = "http://example.com/extension#foo", definedLocally = true, isModifier = false)
@Description(shortDefinition = "Some description")
private Type foo;
public Type getFoo() {
return foo;
}
public void setFoo(Type theFoo) {
foo = theFoo;
}
}
@Test
public void testExtensionWithTwoTypes() {
PatientWithExtensionWithTwoTypes pt = new PatientWithExtensionWithTwoTypes();
pt.setFoo(new DateTimeType("2011-01-01T00:00:00Z"));
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(pt);
ourLog.info(encoded);
pt = ourCtx.newXmlParser().parseResource(PatientWithExtensionWithTwoTypes.class, encoded);
assertEquals("2011-01-01T00:00:00Z", ((DateTimeType)pt.getFoo()).getValueAsString());
}
@SuppressWarnings("serial")
@ResourceDef
public static class PatientWithExtensionWithOneTypes extends Patient {
@Child(name = "foo", type = { DateTimeType.class }, min = 0, max = 1)
@Extension(url = "http://example.com/extension#foo", definedLocally = true, isModifier = false)
@Description(shortDefinition = "Some description")
private Type foo;
public Type getFoo() {
return foo;
}
public void setFoo(Type theFoo) {
foo = theFoo;
}
}
@Test
public void testExtensionWithOneTypes() {
PatientWithExtensionWithOneTypes pt = new PatientWithExtensionWithOneTypes();
pt.setFoo(new DateTimeType("2011-01-01T00:00:00Z"));
String encoded = ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(pt);
ourLog.info(encoded);
pt = ourCtx.newXmlParser().parseResource(PatientWithExtensionWithOneTypes.class, encoded);
assertEquals("2011-01-01T00:00:00Z", ((DateTimeType)pt.getFoo()).getValueAsString());
}
/** /**
* See #364 * See #364
@ -71,12 +122,11 @@ public class CustomTypeDstu3Test {
"<CustomResource xmlns=\"http://hl7.org/fhir\">", "<CustomResource xmlns=\"http://hl7.org/fhir\">",
"<meta><profile value=\"http://hl7.org/fhir/profiles/custom-resource\"/></meta>", "<meta><profile value=\"http://hl7.org/fhir/profiles/custom-resource\"/></meta>",
"<baseValueCustomDate><date value=\"2016-05-13\"/></baseValueCustomDate>", "<baseValueCustomDate><date value=\"2016-05-13\"/></baseValueCustomDate>",
"</CustomResource>" "</CustomResource>"));
));
//@formatter:on //@formatter:on
CustomResource364Dstu3 parsedResource = parser.parseResource(CustomResource364Dstu3.class, xml); CustomResource364Dstu3 parsedResource = parser.parseResource(CustomResource364Dstu3.class, xml);
assertEquals("2016-05-13", ((CustomResource364CustomDate)parsedResource.getBaseValues()).getDate().getValueAsString()); assertEquals("2016-05-13", ((CustomResource364CustomDate) parsedResource.getBaseValues()).getDate().getValueAsString());
} }
/** /**
@ -99,15 +149,13 @@ public class CustomTypeDstu3Test {
"<CustomResource xmlns=\"http://hl7.org/fhir\">", "<CustomResource xmlns=\"http://hl7.org/fhir\">",
"<meta><profile value=\"http://hl7.org/fhir/profiles/custom-resource\"/></meta>", "<meta><profile value=\"http://hl7.org/fhir/profiles/custom-resource\"/></meta>",
"<baseValueString value=\"2016-05-13\"/>", "<baseValueString value=\"2016-05-13\"/>",
"</CustomResource>" "</CustomResource>"));
));
//@formatter:on //@formatter:on
CustomResource364Dstu3 parsedResource = parser.parseResource(CustomResource364Dstu3.class, xml); CustomResource364Dstu3 parsedResource = parser.parseResource(CustomResource364Dstu3.class, xml);
assertEquals("2016-05-13", ((StringType)parsedResource.getBaseValues()).getValueAsString()); assertEquals("2016-05-13", ((StringType) parsedResource.getBaseValues()).getValueAsString());
} }
@Test @Test
public void parseBundleWithResourceDirective() { public void parseBundleWithResourceDirective() {
String input = createBundle(createResource(false), createResource(true)); String input = createBundle(createResource(false), createResource(true));
@ -121,7 +169,7 @@ public class CustomTypeDstu3Test {
assertEquals(0, res0.getMeta().getProfile().size()); assertEquals(0, res0.getMeta().getProfile().size());
List<org.hl7.fhir.dstu3.model.Extension> exts = res0.getExtensionsByUrl("http://example.com/Weight"); List<org.hl7.fhir.dstu3.model.Extension> exts = res0.getExtensionsByUrl("http://example.com/Weight");
assertEquals(1, exts.size()); assertEquals(1, exts.size());
assertEquals("185 cm", ((StringType)exts.get(0).getValue()).getValue()); assertEquals("185 cm", ((StringType) exts.get(0).getValue()).getValue());
MyCustomPatient res1 = (MyCustomPatient) bundle.getEntry().get(1).getResource(); MyCustomPatient res1 = (MyCustomPatient) bundle.getEntry().get(1).getResource();
assertEquals(1, res1.getMeta().getProfile().size()); assertEquals(1, res1.getMeta().getProfile().size());
@ -148,7 +196,6 @@ public class CustomTypeDstu3Test {
assertEquals("185 cm", parsed.getWeight().getValue()); assertEquals("185 cm", parsed.getWeight().getValue());
} }
@Test @Test
public void parseResourceWithNoDirective() { public void parseResourceWithNoDirective() {
String input = createResource(true); String input = createResource(true);
@ -160,7 +207,7 @@ public class CustomTypeDstu3Test {
List<org.hl7.fhir.dstu3.model.Extension> exts = parsed.getExtensionsByUrl("http://example.com/Weight"); List<org.hl7.fhir.dstu3.model.Extension> exts = parsed.getExtensionsByUrl("http://example.com/Weight");
assertEquals(1, exts.size()); assertEquals(1, exts.size());
assertEquals("185 cm", ((StringType)exts.get(0).getValue()).getValue()); assertEquals("185 cm", ((StringType) exts.get(0).getValue()).getValue());
} }
@Test @Test
@ -411,8 +458,7 @@ public class CustomTypeDstu3Test {
b.append(" <given value=\"Mario\"/>\n"); b.append(" <given value=\"Mario\"/>\n");
b.append(" </name>\n"); b.append(" </name>\n");
b.append("</Patient>"); b.append("</Patient>");
String input = String input = b.toString();
b.toString();
return input; return input;
} }
@ -596,10 +642,8 @@ public class CustomTypeDstu3Test {
} }
@ResourceDef() @ResourceDef()
public static class MyMedication extends Medication public static class MyMedication extends Medication {
{
private static final long serialVersionUID = 1L; private static final long serialVersionUID = 1L;