Support patient and encounter $everything operations at the type level
in JPA
This commit is contained in:
James Agnew
parent
44782faaa0
commit
12d95bf43c
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@ -59,7 +59,6 @@
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<dependency>
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<groupId>org.slf4j</groupId>
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<artifactId>slf4j-api</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>commons-io</groupId>
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@ -74,6 +74,7 @@ import ca.uhn.fhir.context.FhirVersionEnum;
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import ca.uhn.fhir.context.RuntimeChildResourceDefinition;
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import ca.uhn.fhir.context.RuntimeResourceDefinition;
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import ca.uhn.fhir.context.RuntimeSearchParam;
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import ca.uhn.fhir.jpa.dao.SearchParameterMap.EverythingModeEnum;
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import ca.uhn.fhir.jpa.entity.BaseHasResource;
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import ca.uhn.fhir.jpa.entity.BaseResourceIndexedSearchParam;
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import ca.uhn.fhir.jpa.entity.BaseTag;
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@ -1615,7 +1616,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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/**
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* THIS SHOULD RETURN HASHSET and not jsut Set because we add to it later (so it can't be Collections.emptySet())
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*/
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private HashSet<Long> loadReverseIncludes(Collection<Long> theMatches, Set<Include> theRevIncludes, boolean theReverseMode) {
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private HashSet<Long> loadReverseIncludes(Collection<Long> theMatches, Set<Include> theRevIncludes, boolean theReverseMode, EverythingModeEnum theEverythingModeEnum) {
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if (theMatches.size() == 0) {
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return new HashSet<Long>();
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}
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@ -1632,6 +1633,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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boolean addedSomeThisRound;
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do {
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HashSet<Long> pidsToInclude = new HashSet<Long>();
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Set<Long> nextRoundOmit = new HashSet<Long>();
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for (Iterator<Include> iter = includes.iterator(); iter.hasNext();) {
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Include nextInclude = iter.next();
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@ -1648,6 +1650,11 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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List<ResourceLink> results = q.getResultList();
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for (ResourceLink resourceLink : results) {
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if (theReverseMode) {
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if (theEverythingModeEnum == EverythingModeEnum.ENCOUNTER) {
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if (resourceLink.getSourcePath().equals("Encounter.subject") || resourceLink.getSourcePath().equals("Encounter.patient")) {
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nextRoundOmit.add(resourceLink.getSourceResourcePid());
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}
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}
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pidsToInclude.add(resourceLink.getSourceResourcePid());
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} else {
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pidsToInclude.add(resourceLink.getTargetResourcePid());
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@ -1702,6 +1709,9 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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theMatches.add(next);
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}
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}
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pidsToInclude.removeAll(nextRoundOmit);
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addedSomeThisRound = allAdded.addAll(pidsToInclude);
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nextRoundMatches = pidsToInclude;
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} while (includes.size() > 0 && nextRoundMatches.size() > 0 && addedSomeThisRound);
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@ -2024,10 +2034,10 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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}
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// Load _include and _revinclude before filter and sort in everything mode
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if (theParams.isEverythingMode() == true) {
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if (theParams.getEverythingMode() != null) {
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if (theParams.getRevIncludes() != null && theParams.getRevIncludes().isEmpty() == false) {
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loadPids.addAll(loadReverseIncludes(loadPids, theParams.getRevIncludes(), true));
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loadPids.addAll(loadReverseIncludes(loadPids, theParams.getIncludes(), false));
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loadPids.addAll(loadReverseIncludes(loadPids, theParams.getRevIncludes(), true, theParams.getEverythingMode()));
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loadPids.addAll(loadReverseIncludes(loadPids, theParams.getIncludes(), false, theParams.getEverythingMode()));
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}
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}
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@ -2066,9 +2076,9 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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// Load _revinclude resources
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final Set<Long> revIncludedPids;
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if (theParams.isEverythingMode() == false) {
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if (theParams.getEverythingMode() == null) {
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if (theParams.getRevIncludes() != null && theParams.getRevIncludes().isEmpty() == false) {
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revIncludedPids = loadReverseIncludes(pids, theParams.getRevIncludes(), true);
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revIncludedPids = loadReverseIncludes(pids, theParams.getRevIncludes(), true, null);
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} else {
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revIncludedPids = new HashSet<Long>();
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}
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@ -2095,9 +2105,9 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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List<Long> pidsSubList = pids.subList(theFromIndex, theToIndex);
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// Load includes
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if (!theParams.isEverythingMode()) {
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if (theParams.getEverythingMode()==null) {
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pidsSubList = new ArrayList<Long>(pidsSubList);
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revIncludedPids.addAll(loadReverseIncludes(pidsSubList, theParams.getIncludes(), false));
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revIncludedPids.addAll(loadReverseIncludes(pidsSubList, theParams.getIncludes(), false, null));
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}
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// Execute the query and make sure we return distinct results
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@ -0,0 +1,63 @@
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package ca.uhn.fhir.jpa.dao;
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/*
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* #%L
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* HAPI FHIR JPA Server
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* %%
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* Copyright (C) 2014 - 2015 University Health Network
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import java.util.Collections;
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import javax.servlet.http.HttpServletRequest;
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import ca.uhn.fhir.jpa.dao.SearchParameterMap.EverythingModeEnum;
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import ca.uhn.fhir.model.api.IResource;
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import ca.uhn.fhir.model.dstu2.resource.Encounter;
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import ca.uhn.fhir.model.primitive.IdDt;
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import ca.uhn.fhir.model.primitive.UnsignedIntDt;
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import ca.uhn.fhir.rest.api.SortSpec;
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import ca.uhn.fhir.rest.param.DateRangeParam;
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import ca.uhn.fhir.rest.param.StringParam;
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import ca.uhn.fhir.rest.server.IBundleProvider;
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public class FhirResourceDaoEncounterDstu2 extends FhirResourceDaoDstu2<Encounter>implements IFhirResourceDaoEncounter<Encounter> {
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@Override
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public IBundleProvider encounterInstanceEverything(HttpServletRequest theServletRequest, IdDt theId, UnsignedIntDt theCount, DateRangeParam theLastUpdated, SortSpec theSort) {
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SearchParameterMap paramMap = new SearchParameterMap();
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if (theCount != null) {
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paramMap.setCount(theCount.getValue());
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}
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paramMap.setRevIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
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paramMap.setIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
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paramMap.setEverythingMode(EverythingModeEnum.ENCOUNTER);
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paramMap.setSort(theSort);
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paramMap.setLastUpdated(theLastUpdated);
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if (theId != null) {
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paramMap.add("_id", new StringParam(theId.getIdPart()));
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}
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ca.uhn.fhir.rest.server.IBundleProvider retVal = search(paramMap);
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return retVal;
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}
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@Override
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public IBundleProvider encounterTypeEverything(HttpServletRequest theServletRequest, UnsignedIntDt theCount, DateRangeParam theLastUpdated, SortSpec theSort) {
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return encounterInstanceEverything(theServletRequest, null, theCount, theLastUpdated, theSort);
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}
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}
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@ -24,6 +24,7 @@ import java.util.Collections;
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import javax.servlet.http.HttpServletRequest;
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import ca.uhn.fhir.jpa.dao.SearchParameterMap.EverythingModeEnum;
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import ca.uhn.fhir.model.api.IResource;
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import ca.uhn.fhir.model.dstu2.resource.Patient;
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import ca.uhn.fhir.model.primitive.IdDt;
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@ -36,7 +37,7 @@ import ca.uhn.fhir.rest.server.IBundleProvider;
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public class FhirResourceDaoPatientDstu2 extends FhirResourceDaoDstu2<Patient>implements IFhirResourceDaoPatient<Patient> {
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@Override
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public IBundleProvider everything(HttpServletRequest theServletRequest, IdDt theId, UnsignedIntDt theCount, DateRangeParam theLastUpdated, SortSpec theSort) {
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public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IdDt theId, UnsignedIntDt theCount, DateRangeParam theLastUpdated, SortSpec theSort) {
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SearchParameterMap paramMap = new SearchParameterMap();
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if (theCount != null) {
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paramMap.setCount(theCount.getValue());
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@ -44,12 +45,19 @@ public class FhirResourceDaoPatientDstu2 extends FhirResourceDaoDstu2<Patient>im
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paramMap.setRevIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
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paramMap.setIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
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paramMap.setEverythingMode(true);
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paramMap.setEverythingMode(EverythingModeEnum.PATIENT);
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paramMap.setSort(theSort);
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paramMap.setLastUpdated(theLastUpdated);
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paramMap.add("_id", new StringParam(theId.getIdPart()));
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if (theId != null) {
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paramMap.add("_id", new StringParam(theId.getIdPart()));
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}
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ca.uhn.fhir.rest.server.IBundleProvider retVal = search(paramMap);
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return retVal;
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}
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@Override
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public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, UnsignedIntDt theCount, DateRangeParam theLastUpdated, SortSpec theSort) {
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return patientInstanceEverything(theServletRequest, null, theCount, theLastUpdated, theSort);
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}
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}
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@ -0,0 +1,39 @@
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package ca.uhn.fhir.jpa.dao;
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import javax.servlet.http.HttpServletRequest;
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/*
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* #%L
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* HAPI FHIR JPA Server
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* %%
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* Copyright (C) 2014 - 2015 University Health Network
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import ca.uhn.fhir.model.primitive.IdDt;
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import ca.uhn.fhir.model.primitive.UnsignedIntDt;
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import ca.uhn.fhir.rest.api.SortSpec;
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import ca.uhn.fhir.rest.param.DateRangeParam;
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import ca.uhn.fhir.rest.server.IBundleProvider;
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public interface IFhirResourceDaoEncounter<T extends IBaseResource> extends IFhirResourceDao<T> {
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IBundleProvider encounterInstanceEverything(HttpServletRequest theServletRequest, IdDt theId, UnsignedIntDt theCount, DateRangeParam theLastUpdate, SortSpec theSort);
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IBundleProvider encounterTypeEverything(HttpServletRequest theServletRequest, UnsignedIntDt theCount, DateRangeParam theLastUpdated, SortSpec theSortSpec);
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}
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@ -32,6 +32,8 @@ import ca.uhn.fhir.rest.server.IBundleProvider;
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public interface IFhirResourceDaoPatient<T extends IBaseResource> extends IFhirResourceDao<T> {
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IBundleProvider everything(HttpServletRequest theServletRequest, IdDt theId, UnsignedIntDt theCount, DateRangeParam theLastUpdate, SortSpec theSort);
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IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IdDt theId, UnsignedIntDt theCount, DateRangeParam theLastUpdate, SortSpec theSort);
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IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, UnsignedIntDt theCount, DateRangeParam theLastUpdated, SortSpec theSortSpec);
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}
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@ -42,7 +42,7 @@ public class SearchParameterMap extends LinkedHashMap<String, List<List<? extend
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private static final long serialVersionUID = 1L;
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private Integer myCount;
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private boolean myEverythingMode = false;
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private EverythingModeEnum myEverythingMode = null;
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private Set<Include> myIncludes;
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private DateRangeParam myLastUpdated;
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private Set<Include> myRevIncludes;
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@ -124,7 +124,7 @@ public class SearchParameterMap extends LinkedHashMap<String, List<List<? extend
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return mySort;
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}
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public boolean isEverythingMode() {
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public EverythingModeEnum getEverythingMode() {
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return myEverythingMode;
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}
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@ -132,7 +132,7 @@ public class SearchParameterMap extends LinkedHashMap<String, List<List<? extend
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myCount = theCount;
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}
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public void setEverythingMode(boolean theConsolidateMatches) {
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public void setEverythingMode(EverythingModeEnum theConsolidateMatches) {
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myEverythingMode = theConsolidateMatches;
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}
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@ -164,4 +164,8 @@ public class SearchParameterMap extends LinkedHashMap<String, List<List<? extend
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return b.toString();
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}
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public enum EverythingModeEnum {
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PATIENT, ENCOUNTER
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}
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}
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@ -1,64 +1,78 @@
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package ca.uhn.fhir.jpa.provider;
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/*
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* #%L
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* HAPI FHIR JPA Server
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* %%
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* Copyright (C) 2014 - 2015 University Health Network
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import java.util.Collections;
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import ca.uhn.fhir.jpa.dao.SearchParameterMap;
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import ca.uhn.fhir.model.api.IResource;
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import ca.uhn.fhir.jpa.dao.IFhirResourceDaoEncounter;
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import ca.uhn.fhir.model.api.annotation.Description;
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import ca.uhn.fhir.model.dstu2.resource.Encounter;
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import ca.uhn.fhir.rest.annotation.IdParam;
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import ca.uhn.fhir.rest.annotation.Operation;
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import ca.uhn.fhir.rest.annotation.OperationParam;
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import ca.uhn.fhir.rest.param.StringParam;
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import ca.uhn.fhir.rest.annotation.Sort;
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import ca.uhn.fhir.rest.api.SortSpec;
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import ca.uhn.fhir.rest.param.DateRangeParam;
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import ca.uhn.fhir.rest.server.Constants;
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public class BaseJpaResourceProviderEncounterDstu2 extends JpaResourceProviderDstu2<Encounter> {
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/**
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* Encounter/123/$everything
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*/
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//@formatter:off
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@Operation(name = "everything", idempotent = true)
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public ca.uhn.fhir.rest.server.IBundleProvider EncounterInstanceEverything(
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@Operation(name="everything", idempotent=true)
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public ca.uhn.fhir.rest.server.IBundleProvider everything(
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javax.servlet.http.HttpServletRequest theServletRequest,
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@IdParam ca.uhn.fhir.model.primitive.IdDt theId,
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javax.servlet.http.HttpServletRequest theServletRequest,
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@IdParam
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ca.uhn.fhir.model.primitive.IdDt theId,
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@Description(formalDefinition="Results from this method are returned across multiple pages. This parameter controls the size of those pages.")
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@OperationParam(name="_count") ca.uhn.fhir.model.primitive.UnsignedIntDt theCount
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){
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@Description(formalDefinition="Results from this method are returned across multiple pages. This parameter controls the size of those pages.")
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@OperationParam(name = Constants.PARAM_COUNT)
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ca.uhn.fhir.model.primitive.UnsignedIntDt theCount,
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@Description(shortDefinition="Only return resources which were last updated as specified by the given range")
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@OperationParam(name = Constants.PARAM_LASTUPDATED, min=0, max=1)
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DateRangeParam theLastUpdated,
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@Sort
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SortSpec theSortSpec
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) {
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//@formatter:on
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startRequest(theServletRequest);
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try {
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SearchParameterMap paramMap = new SearchParameterMap();
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if (theCount != null) {
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paramMap.setCount(theCount.getValue());
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}
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paramMap.setRevIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
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paramMap.setIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
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paramMap.setEverythingMode(true);
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paramMap.add("_id", new StringParam(theId.getIdPart()));
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ca.uhn.fhir.rest.server.IBundleProvider retVal = getDao().search(paramMap);
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return retVal;
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return ((IFhirResourceDaoEncounter<Encounter>)getDao()).encounterInstanceEverything(theServletRequest, theId, theCount, theLastUpdated, theSortSpec);
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} finally {
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endRequest(theServletRequest);
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}
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}}
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/**
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* /Encounter/$everything
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*/
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//@formatter:off
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@Operation(name = "everything", idempotent = true)
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public ca.uhn.fhir.rest.server.IBundleProvider EncounterTypeEverything(
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javax.servlet.http.HttpServletRequest theServletRequest,
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@Description(formalDefinition="Results from this method are returned across multiple pages. This parameter controls the size of those pages.")
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@OperationParam(name = Constants.PARAM_COUNT)
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ca.uhn.fhir.model.primitive.UnsignedIntDt theCount,
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@Description(shortDefinition="Only return resources which were last updated as specified by the given range")
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@OperationParam(name = Constants.PARAM_LASTUPDATED, min=0, max=1)
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DateRangeParam theLastUpdated,
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@Sort
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SortSpec theSortSpec
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) {
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//@formatter:on
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||||
startRequest(theServletRequest);
|
||||
try {
|
||||
return ((IFhirResourceDaoEncounter<Encounter>)getDao()).encounterTypeEverything(theServletRequest, theCount, theLastUpdated, theSortSpec);
|
||||
} finally {
|
||||
endRequest(theServletRequest);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -33,8 +33,13 @@ import ca.uhn.fhir.rest.server.Constants;
|
|||
|
||||
public class BaseJpaResourceProviderPatientDstu2 extends JpaResourceProviderDstu2<Patient> {
|
||||
|
||||
|
||||
/**
|
||||
* Patient/123/$everything
|
||||
*/
|
||||
//@formatter:off
|
||||
@Operation(name = "everything", idempotent = true)
|
||||
public ca.uhn.fhir.rest.server.IBundleProvider everything(
|
||||
public ca.uhn.fhir.rest.server.IBundleProvider patientInstanceEverything(
|
||||
|
||||
javax.servlet.http.HttpServletRequest theServletRequest,
|
||||
|
||||
|
|
@ -49,17 +54,46 @@ public class BaseJpaResourceProviderPatientDstu2 extends JpaResourceProviderDstu
|
|||
@OperationParam(name = Constants.PARAM_LASTUPDATED, min=0, max=1)
|
||||
DateRangeParam theLastUpdated,
|
||||
|
||||
// @OperationParam(name = Constants.PARAM_SORT, min=0, max=1)
|
||||
@Sort
|
||||
SortSpec theSortSpec
|
||||
) {
|
||||
//@formatter:on
|
||||
|
||||
startRequest(theServletRequest);
|
||||
try {
|
||||
return ((IFhirResourceDaoPatient<Patient>)getDao()).everything(theServletRequest, theId, theCount, theLastUpdated, theSortSpec);
|
||||
return ((IFhirResourceDaoPatient<Patient>)getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theLastUpdated, theSortSpec);
|
||||
} finally {
|
||||
endRequest(theServletRequest);
|
||||
}
|
||||
}}
|
||||
|
||||
/**
|
||||
* /Patient/$everything
|
||||
*/
|
||||
//@formatter:off
|
||||
@Operation(name = "everything", idempotent = true)
|
||||
public ca.uhn.fhir.rest.server.IBundleProvider patientTypeEverything(
|
||||
|
||||
javax.servlet.http.HttpServletRequest theServletRequest,
|
||||
|
||||
@Description(formalDefinition="Results from this method are returned across multiple pages. This parameter controls the size of those pages.")
|
||||
@OperationParam(name = Constants.PARAM_COUNT)
|
||||
ca.uhn.fhir.model.primitive.UnsignedIntDt theCount,
|
||||
|
||||
@Description(shortDefinition="Only return resources which were last updated as specified by the given range")
|
||||
@OperationParam(name = Constants.PARAM_LASTUPDATED, min=0, max=1)
|
||||
DateRangeParam theLastUpdated,
|
||||
|
||||
@Sort
|
||||
SortSpec theSortSpec
|
||||
) {
|
||||
//@formatter:on
|
||||
|
||||
startRequest(theServletRequest);
|
||||
try {
|
||||
return ((IFhirResourceDaoPatient<Patient>)getDao()).patientTypeEverything(theServletRequest, theCount, theLastUpdated, theSortSpec);
|
||||
} finally {
|
||||
endRequest(theServletRequest);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -26,9 +26,7 @@ import java.net.Socket;
|
|||
import java.net.SocketTimeoutException;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Date;
|
||||
import java.util.HashSet;
|
||||
import java.util.List;
|
||||
import java.util.Set;
|
||||
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
|
|
@ -598,7 +596,7 @@ public class ResourceProviderDstu2Test extends BaseResourceProviderDstu2Test {
|
|||
* See #147
|
||||
*/
|
||||
@Test
|
||||
public void testEverythingDoesntRepeatPatient() throws Exception {
|
||||
public void testEverythingPatientDoesntRepeatPatient() throws Exception {
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle b;
|
||||
b = myFhirCtx.newJsonParser().parseResource(ca.uhn.fhir.model.dstu2.resource.Bundle.class, new InputStreamReader(ResourceProviderDstu2Test.class.getResourceAsStream("/bug147-bundle.json")));
|
||||
|
||||
|
|
@ -654,12 +652,9 @@ public class ResourceProviderDstu2Test extends BaseResourceProviderDstu2Test {
|
|||
}
|
||||
|
||||
@Test
|
||||
public void testEverythingWithLastUpdatedAndSort() throws Exception {
|
||||
public void testEverythingPatientWithLastUpdatedAndSort() throws Exception {
|
||||
String methodName = "testEverythingWithLastUpdatedAndSort";
|
||||
|
||||
long time0 = System.currentTimeMillis();
|
||||
Thread.sleep(10);
|
||||
|
||||
Organization org = new Organization();
|
||||
org.setName(methodName);
|
||||
IIdType oId = ourClient.create().resource(org).execute().getId().toUnqualifiedVersionless();
|
||||
|
|
@ -747,7 +742,7 @@ public class ResourceProviderDstu2Test extends BaseResourceProviderDstu2Test {
|
|||
* See #148
|
||||
*/
|
||||
@Test
|
||||
public void testEverythingIncludesCondition() throws Exception {
|
||||
public void testEverythingPatientIncludesCondition() throws Exception {
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle b = new ca.uhn.fhir.model.dstu2.resource.Bundle();
|
||||
Patient p = new Patient();
|
||||
p.setId("1");
|
||||
|
|
@ -778,11 +773,52 @@ public class ResourceProviderDstu2Test extends BaseResourceProviderDstu2Test {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testEverythingPatientType() throws Exception {
|
||||
String methodName = "testEverythingPatientType";
|
||||
|
||||
Organization o1 = new Organization();
|
||||
o1.setName(methodName+"1");
|
||||
IIdType o1Id = ourClient.create().resource(o1).execute().getId().toUnqualifiedVersionless();
|
||||
Organization o2 = new Organization();
|
||||
o2.setName(methodName+"2");
|
||||
IIdType o2Id = ourClient.create().resource(o2).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Patient p1 = new Patient();
|
||||
p1.addName().addFamily(methodName+"1");
|
||||
p1.getManagingOrganization().setReference(o1Id);
|
||||
IIdType p1Id = ourClient.create().resource(p1).execute().getId().toUnqualifiedVersionless();
|
||||
Patient p2 = new Patient();
|
||||
p2.addName().addFamily(methodName+"2");
|
||||
p2.getManagingOrganization().setReference(o2Id);
|
||||
IIdType p2Id = ourClient.create().resource(p2).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Condition c1 = new Condition();
|
||||
c1.getPatient().setReference(p1Id);
|
||||
IIdType c1Id = ourClient.create().resource(c1).execute().getId().toUnqualifiedVersionless();
|
||||
Condition c2 = new Condition();
|
||||
c2.getPatient().setReference(p2Id);
|
||||
IIdType c2Id = ourClient.create().resource(c2).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Condition c3 = new Condition();
|
||||
c3.addIdentifier().setValue(methodName+"3");
|
||||
IIdType c3Id = ourClient.create().resource(c3).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Parameters output = ourClient.operation().onType(Patient.class).named("everything").withNoParameters(Parameters.class).execute();
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle b = (ca.uhn.fhir.model.dstu2.resource.Bundle) output.getParameterFirstRep().getResource();
|
||||
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
|
||||
|
||||
assertThat(ids, containsInAnyOrder(o1Id, o2Id, p1Id, p2Id, c1Id, c2Id));
|
||||
assertThat(ids, not(containsInRelativeOrder(c3Id)));
|
||||
}
|
||||
|
||||
|
||||
|
||||
/**
|
||||
* Test for #226
|
||||
*/
|
||||
@Test
|
||||
public void testEverythingIncludesBackReferences() throws Exception {
|
||||
public void testEverythingPatientIncludesBackReferences() throws Exception {
|
||||
String methodName = "testEverythingIncludesBackReferences";
|
||||
|
||||
Medication med = new Medication();
|
||||
|
|
@ -800,13 +836,13 @@ public class ResourceProviderDstu2Test extends BaseResourceProviderDstu2Test {
|
|||
|
||||
Parameters output = ourClient.operation().onInstance(patId).named("everything").withNoParameters(Parameters.class).execute();
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle b = (ca.uhn.fhir.model.dstu2.resource.Bundle) output.getParameterFirstRep().getResource();
|
||||
Set<IdDt> ids = toIdList(b);
|
||||
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
|
||||
ourLog.info(ids.toString());
|
||||
assertThat(ids, containsInAnyOrder(patId, medId, moId));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testEverythingOperation() throws Exception {
|
||||
public void testEverythingPatientOperation() throws Exception {
|
||||
String methodName = "testEverythingOperation";
|
||||
|
||||
Organization org1parent = new Organization();
|
||||
|
|
@ -844,19 +880,132 @@ public class ResourceProviderDstu2Test extends BaseResourceProviderDstu2Test {
|
|||
|
||||
Parameters output = ourClient.operation().onInstance(patientId).named("everything").withNoParameters(Parameters.class).execute();
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle b = (ca.uhn.fhir.model.dstu2.resource.Bundle) output.getParameterFirstRep().getResource();
|
||||
|
||||
Set<IdDt> ids = toIdList(b);
|
||||
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
|
||||
assertThat(ids, containsInAnyOrder(patientId, devId, obsId, encId, orgId1, orgId2, orgId1parent));
|
||||
|
||||
ourLog.info(ids.toString());
|
||||
}
|
||||
|
||||
private Set<IdDt> toIdList(ca.uhn.fhir.model.dstu2.resource.Bundle b) {
|
||||
Set<IdDt> ids = new HashSet<IdDt>();
|
||||
for (Entry next : b.getEntry()) {
|
||||
ids.add(next.getResource().getId().toUnqualifiedVersionless());
|
||||
}
|
||||
return ids;
|
||||
@Test
|
||||
public void testEverythingEncounterInstance() throws Exception {
|
||||
String methodName = "testEverythingEncounterInstance";
|
||||
|
||||
Organization org1parent = new Organization();
|
||||
org1parent.setId("org1parent");
|
||||
org1parent.setName(methodName + "1parent");
|
||||
IIdType orgId1parent = ourClient.update().resource(org1parent).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Organization org1 = new Organization();
|
||||
org1.setName(methodName + "1");
|
||||
org1.getPartOf().setReference(orgId1parent);
|
||||
IIdType orgId1 = ourClient.create().resource(org1).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Patient p = new Patient();
|
||||
p.addName().addFamily(methodName);
|
||||
p.getManagingOrganization().setReference(orgId1);
|
||||
IIdType patientId = ourClient.create().resource(p).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Organization org2 = new Organization();
|
||||
org2.setName(methodName + "1");
|
||||
IIdType orgId2 = ourClient.create().resource(org2).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Device dev = new Device();
|
||||
dev.setModel(methodName);
|
||||
dev.getOwner().setReference(orgId2);
|
||||
IIdType devId = ourClient.create().resource(dev).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Location locParent = new Location();
|
||||
locParent.setName(methodName+"Parent");
|
||||
IIdType locPId = ourClient.create().resource(locParent).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Location locChild = new Location();
|
||||
locChild.setName(methodName);
|
||||
locChild.getPartOf().setReference(locPId);
|
||||
IIdType locCId = ourClient.create().resource(locChild).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Encounter encU = new Encounter();
|
||||
encU.getPatient().setReference(patientId);
|
||||
encU.addLocation().getLocation().setReference(locCId);
|
||||
IIdType encUId = ourClient.create().resource(encU).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Encounter enc = new Encounter();
|
||||
enc.getPatient().setReference(patientId);
|
||||
enc.addLocation().getLocation().setReference(locCId);
|
||||
IIdType encId = ourClient.create().resource(enc).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Observation obs = new Observation();
|
||||
obs.getSubject().setReference(patientId);
|
||||
obs.getDevice().setReference(devId);
|
||||
obs.getEncounter().setReference(encId);
|
||||
IIdType obsId = ourClient.create().resource(obs).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Parameters output = ourClient.operation().onInstance(encId).named("everything").withNoParameters(Parameters.class).execute();
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle b = (ca.uhn.fhir.model.dstu2.resource.Bundle) output.getParameterFirstRep().getResource();
|
||||
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
|
||||
assertThat(ids, containsInAnyOrder(patientId, encId, orgId1, orgId2, orgId1parent, locPId, locCId, obsId, devId));
|
||||
assertThat(ids, not(containsInRelativeOrder(encUId)));
|
||||
|
||||
ourLog.info(ids.toString());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testEverythingEncounterType() throws Exception {
|
||||
String methodName = "testEverythingEncounterInstance";
|
||||
|
||||
Organization org1parent = new Organization();
|
||||
org1parent.setId("org1parent");
|
||||
org1parent.setName(methodName + "1parent");
|
||||
IIdType orgId1parent = ourClient.update().resource(org1parent).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Organization org1 = new Organization();
|
||||
org1.setName(methodName + "1");
|
||||
org1.getPartOf().setReference(orgId1parent);
|
||||
IIdType orgId1 = ourClient.create().resource(org1).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Patient p = new Patient();
|
||||
p.addName().addFamily(methodName);
|
||||
p.getManagingOrganization().setReference(orgId1);
|
||||
IIdType patientId = ourClient.create().resource(p).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Organization org2 = new Organization();
|
||||
org2.setName(methodName + "1");
|
||||
IIdType orgId2 = ourClient.create().resource(org2).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Device dev = new Device();
|
||||
dev.setModel(methodName);
|
||||
dev.getOwner().setReference(orgId2);
|
||||
IIdType devId = ourClient.create().resource(dev).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Location locParent = new Location();
|
||||
locParent.setName(methodName+"Parent");
|
||||
IIdType locPId = ourClient.create().resource(locParent).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Location locChild = new Location();
|
||||
locChild.setName(methodName);
|
||||
locChild.getPartOf().setReference(locPId);
|
||||
IIdType locCId = ourClient.create().resource(locChild).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Encounter encU = new Encounter();
|
||||
encU.addIdentifier().setValue(methodName);
|
||||
IIdType encUId = ourClient.create().resource(encU).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Encounter enc = new Encounter();
|
||||
enc.getPatient().setReference(patientId);
|
||||
enc.addLocation().getLocation().setReference(locCId);
|
||||
IIdType encId = ourClient.create().resource(enc).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Observation obs = new Observation();
|
||||
obs.getSubject().setReference(patientId);
|
||||
obs.getDevice().setReference(devId);
|
||||
obs.getEncounter().setReference(encId);
|
||||
IIdType obsId = ourClient.create().resource(obs).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Parameters output = ourClient.operation().onType(Encounter.class).named("everything").withNoParameters(Parameters.class).execute();
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle b = (ca.uhn.fhir.model.dstu2.resource.Bundle) output.getParameterFirstRep().getResource();
|
||||
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
|
||||
assertThat(ids, containsInAnyOrder(patientId, encUId, encId, orgId1, orgId2, orgId1parent, locPId, locCId, obsId, devId));
|
||||
|
||||
ourLog.info(ids.toString());
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
@ -1348,7 +1497,7 @@ public class ResourceProviderDstu2Test extends BaseResourceProviderDstu2Test {
|
|||
o.getCode().setText("testSearchWithInvalidSort");
|
||||
myObservationDao.create(o);
|
||||
//@formatter:off
|
||||
Bundle found = ourClient
|
||||
ourClient
|
||||
.search()
|
||||
.forResource(Observation.class)
|
||||
.sort().ascending(Observation.CODE_VALUE_QUANTITY) // composite sort not supported yet
|
||||
|
|
|
|||
|
|
@ -41,7 +41,7 @@
|
|||
#foreach ( $res in $resources )
|
||||
<bean id="my${res.name}Dao${versionCapitalized}"
|
||||
## Some resource types have customized DAOs for resource specific functionality
|
||||
#if ( ${versionCapitalized} == 'Dstu2' && ( ${res.name} == 'Bundle' || ${res.name} == 'Patient' || ${res.name} == 'Subscription' || ${res.name} == 'QuestionnaireResponse' || ${res.name} == 'ValueSet'))
|
||||
#if ( ${versionCapitalized} == 'Dstu2' && ( ${res.name} == 'Bundle' || ${res.name} == 'Everything' || ${res.name} == 'Patient' || ${res.name} == 'Subscription' || ${res.name} == 'QuestionnaireResponse' || ${res.name} == 'ValueSet'))
|
||||
class="ca.uhn.fhir.jpa.dao.FhirResourceDao${res.name}${versionCapitalized}">
|
||||
#else
|
||||
class="ca.uhn.fhir.jpa.dao.FhirResourceDao${versionCapitalized}">
|
||||
|
|
|
|||
|
|
@ -124,6 +124,9 @@
|
|||
Remove invalid entries in OSGi Manifest. Thanks
|
||||
to Alexander Kley for the fix!
|
||||
</action>
|
||||
<action type="add">
|
||||
JPA server now supports $everything on Patient and Encounter types (patient and encounter instance was already supported)
|
||||
</action>
|
||||
</release>
|
||||
<release version="1.2" date="2015-09-18">
|
||||
<action type="add">
|
||||
|
|
|
|||
Loading…
Reference in New Issue