Questions on FHIR Repository Validation and profile versions.
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Martha Mitran
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564ae46008
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package ca.uhn.fhir.jpa.provider;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.support.DefaultProfileValidationSupport;
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import ca.uhn.fhir.jpa.test.BaseJpaR4Test;
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import ca.uhn.fhir.validation.FhirValidator;
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import ca.uhn.fhir.validation.SingleValidationMessage;
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import ca.uhn.fhir.validation.ValidationResult;
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import org.hl7.fhir.common.hapi.validation.support.CachingValidationSupport;
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import org.hl7.fhir.common.hapi.validation.support.CommonCodeSystemsTerminologyService;
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import org.hl7.fhir.common.hapi.validation.support.InMemoryTerminologyServerValidationSupport;
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import org.hl7.fhir.common.hapi.validation.support.PrePopulatedValidationSupport;
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import org.hl7.fhir.common.hapi.validation.support.SnapshotGeneratingValidationSupport;
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import org.hl7.fhir.common.hapi.validation.support.ValidationSupportChain;
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import org.hl7.fhir.common.hapi.validation.validator.FhirInstanceValidator;
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import org.hl7.fhir.r4.model.CodeType;
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import org.hl7.fhir.r4.model.ElementDefinition;
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import org.hl7.fhir.r4.model.Enumerations;
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import org.hl7.fhir.r4.model.Observation;
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import org.hl7.fhir.r4.model.Patient;
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import org.hl7.fhir.r4.model.Quantity;
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import org.hl7.fhir.r4.model.StructureDefinition;
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import org.hl7.fhir.r4.model.UriType;
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import org.hl7.fhir.r4.model.ValueSet;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import static org.junit.jupiter.api.Assertions.assertTrue;
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public class DiscoveryValidationSupportTest extends BaseJpaR4Test {
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private static final FhirContext ourCtx = FhirContext.forR4();
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private static FhirValidator myFhirValidator;
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private static PrePopulatedValidationSupport ourValidationSupport;
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@BeforeAll
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public static void setup() {
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myFhirValidator = ourCtx.newValidator();
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myFhirValidator.setValidateAgainstStandardSchema(false);
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myFhirValidator.setValidateAgainstStandardSchematron(false);
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ourValidationSupport = new PrePopulatedValidationSupport(ourCtx);
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ValidationSupportChain chain = new ValidationSupportChain(
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new DefaultProfileValidationSupport(ourCtx),
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new SnapshotGeneratingValidationSupport(ourCtx),
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new CommonCodeSystemsTerminologyService(ourCtx),
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new InMemoryTerminologyServerValidationSupport(ourCtx),
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ourValidationSupport);
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CachingValidationSupport myValidationSupport = new CachingValidationSupport(chain, true);
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FhirInstanceValidator myInstanceVal = new FhirInstanceValidator(myValidationSupport);
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myFhirValidator.registerValidatorModule(myInstanceVal);
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}
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@Test
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public void test() {
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ValueSet vs = new ValueSet();
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vs.setUrl("http://vs");
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vs.getCompose().addInclude().setSystem("http://cs")
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.addConcept(new ValueSet.ConceptReferenceComponent(new CodeType("code1")))
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.addConcept(new ValueSet.ConceptReferenceComponent(new CodeType("code2")));
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myValueSetDao.create(vs);
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StructureDefinition sd1 = new StructureDefinition()
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.setUrl("http://example.org/fhir/StructureDefinition/TestObservation").setVersion("v1")
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.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Observation")
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.setType("Observation")
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.setDerivation(StructureDefinition.TypeDerivationRule.CONSTRAINT);
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sd1.getDifferential()
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.addElement()
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.setPath("Observation.value[x]")
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.addType(new ElementDefinition.TypeRefComponent(new UriType("Quantity")))
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.setBinding(new ElementDefinition.ElementDefinitionBindingComponent().setStrength(Enumerations.BindingStrength.REQUIRED).setValueSet("http://vs1"))
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.setId("Observation.value[x]");
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myStructureDefinitionDao.create(sd1, mySrd);
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StructureDefinition sd2 = new StructureDefinition()
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.setUrl("http://example.org/fhir/StructureDefinition/TestObservation").setVersion("v2")
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.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Observation")
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.setType("Observation")
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.setDerivation(StructureDefinition.TypeDerivationRule.CONSTRAINT);
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sd2.getDifferential()
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.addElement()
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.setPath("Observation.value[x]")
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.addType(new ElementDefinition.TypeRefComponent(new UriType("Quantity")))
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.setBinding(new ElementDefinition.ElementDefinitionBindingComponent().setStrength(Enumerations.BindingStrength.REQUIRED).setValueSet("http://vs"))
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.setId("Observation.value[x]");
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myStructureDefinitionDao.create(sd2, mySrd);
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ourValidationSupport.addStructureDefinition(sd1);
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ourValidationSupport.addStructureDefinition(sd2);
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Observation observation = new Observation();
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observation.getMeta().addProfile("http://example.org/fhir/StructureDefinition/TestObservation");
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observation.setStatus(Observation.ObservationStatus.REGISTERED);
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observation.getCode().setText("new-visit");
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observation.setValue(new Quantity().setSystem("http://cs").setCode("code1").setValue(123));
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ValidationResult validationResult = myFhirValidator.validateWithResult(observation);
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for (SingleValidationMessage message : validationResult.getMessages()) {
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ourLog.info(message.toString());
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}
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assertTrue(validationResult.isSuccessful());
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}
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@Test
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public void test_simple() {
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StructureDefinition sdIdentifier = new StructureDefinition()
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.setUrl("http://example.org/fhir/StructureDefinition/TestPatient").setVersion("1")
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.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Patient-identifier")
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.setType("Patient")
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.setDerivation(StructureDefinition.TypeDerivationRule.CONSTRAINT);
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sdIdentifier.getDifferential().addElement()
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.setPath("Patient.identifier")
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.setMin(1)
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.setId("Patient.identifier");
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myStructureDefinitionDao.create(sdIdentifier, mySrd);
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StructureDefinition sdName = new StructureDefinition()
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.setUrl("http://example.org/fhir/StructureDefinition/TestPatient").setVersion("2")
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.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Patient-name")
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.setType("Patient")
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.setDerivation(StructureDefinition.TypeDerivationRule.CONSTRAINT);
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sdName.getDifferential().addElement()
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.setPath("Patient.name")
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.setMin(1)
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.setMustSupport(true)
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.setId("Patient.name");
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myStructureDefinitionDao.create(sdName, mySrd);
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StructureDefinition sdBirthDate = new StructureDefinition()
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.setUrl("http://example.org/fhir/StructureDefinition/TestPatient").setVersion("3")
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.setBaseDefinition("http://hl7.org/fhir/StructureDefinition/Patient")
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.setType("Patient")
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.setDerivation(StructureDefinition.TypeDerivationRule.CONSTRAINT);
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sdBirthDate.getDifferential().addElement()
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.setPath("Patient.birthDate")
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.setMin(1)
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.setMustSupport(true)
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.setId("Patient.birthDate");
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myStructureDefinitionDao.create(sdBirthDate, mySrd);
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ourValidationSupport.addStructureDefinition(sdIdentifier);
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ourValidationSupport.addStructureDefinition(sdName);
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ourValidationSupport.addStructureDefinition(sdBirthDate);
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Patient patient = new Patient();
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patient.getMeta()
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.addProfile("http://example.org/fhir/StructureDefinition/TestPatient-name|1")
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.addProfile("http://example.org/fhir/StructureDefinition/TestPatient-identifier|2");
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myPatientDao.create(patient, mySrd);
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ValidationResult validationResult = myFhirValidator.validateWithResult(patient);
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for (SingleValidationMessage message : validationResult.getMessages()) {
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ourLog.info(message.toString());
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}
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assertTrue(validationResult.isSuccessful());
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}
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}
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