Bump several dependency versions to latest versions

This commit is contained in:
James Agnew 2019-07-07 09:58:31 -04:00
parent 24536941c2
commit 190f0a0d5a
54 changed files with 11 additions and 7007 deletions

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/jpaserver_derby_files

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<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-example-with-custom</artifactId>
<version>0.0.1-SNAPSHOT</version>
<name>HAPI FHIR JPA Server - Example with Custom Resources</name>
<repositories>
<repository>
<id>oss-snapshots</id>
<snapshots>
<enabled>true</enabled>
</snapshots>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
</repository>
</repositories>
<dependencies>
<!-- This dependency includes the core HAPI-FHIR classes -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>1.0-SNAPSHOT</version>
</dependency>
<!-- At least one "structures" JAR must also be included -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu2</artifactId>
<version>1.0-SNAPSHOT</version>
</dependency>
<!-- This dependency includes the JPA server itself, which is packaged
separately from the rest of HAPI FHIR -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-jpaserver-base</artifactId>
<version>1.0-SNAPSHOT</version>
</dependency>
<!-- This dependency is used for the "FHIR Tester" web app overlay -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-testpage-overlay</artifactId>
<version>1.0-SNAPSHOT</version>
<type>war</type>
<scope>provided</scope>
</dependency>
<!-- HAPI-FHIR uses Logback for logging support. The logback library is
included automatically by Maven as a part of the hapi-fhir-base dependency,
but you also need to include a logging library. Logback is used here, but
log4j would also be fine. -->
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.1.2</version>
</dependency>
<!-- Needed for JEE/Servlet support -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.0.1</version>
<scope>provided</scope>
</dependency>
<!-- If you are using HAPI narrative generation, you will need to include
Thymeleaf as well. Otherwise the following can be omitted. -->
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<version>2.1.4.RELEASE</version>
</dependency>
<!-- Used for CORS support -->
<dependency>
<groupId>org.ebaysf.web</groupId>
<artifactId>cors-filter</artifactId>
<version>1.0.1</version>
<exclusions>
<exclusion>
<artifactId>servlet-api</artifactId>
<groupId>javax.servlet</groupId>
</exclusion>
</exclusions>
</dependency>
<!-- Spring Web is used to deploy the server to a web container. -->
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-web</artifactId>
<version>4.1.6.RELEASE</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>org.springframework</groupId>
<artifactId>spring-webmvc</artifactId>
<version>4.1.6.RELEASE</version>
</dependency>
<!-- You may not need this if you are deploying to an application server
which provides database connection pools itself. -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-dbcp2</artifactId>
<version>2.0.1</version>
</dependency>
<!-- Used to provide JSON support in non-FHIR services -->
<!-- <dependency> <groupId>org.codehaus.jackson</groupId> <artifactId>jackson-mapper-asl</artifactId>
<version>1.9.13</version> </dependency> -->
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-core</artifactId>
<version>2.5.2</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-annotations</artifactId>
<version>2.5.2</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>2.5.2</version>
</dependency>
<!-- This example uses Derby embedded database. If you are using another
database such as Mysql or Oracle, you may omit the following dependencies
and replace them with an appropriate database client dependency for your
database platform. -->
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derby</artifactId>
<version>10.11.1.1</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbynet</artifactId>
<version>10.11.1.1</version>
</dependency>
<dependency>
<groupId>org.apache.derby</groupId>
<artifactId>derbyclient</artifactId>
<version>10.11.1.1</version>
</dependency>
<!-- Testing -->
<dependency>
<groupId>junit</groupId>
<artifactId>junit</artifactId>
<version>4.12</version>
<scope>test</scope>
</dependency>
<dependency>
<groupId>org.hamcrest</groupId>
<artifactId>java-hamcrest</artifactId>
<version>2.0.0.0</version>
<scope>test</scope>
</dependency>
</dependencies>
<build>
<!-- Tells Maven to name the generated WAR file as hapi-fhir-jpaserver-example.war -->
<finalName>hapi-fhir-jpaserver-example</finalName>
<!-- The following is not required for the application to build, but allows
you to test it by issuing "mvn jetty:run" from the command line. -->
<pluginManagement>
<plugins>
<plugin>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
<version>9.1.1.v20140108</version>
<configuration>
<webApp>
<contextPath>/hapi-fhir-jpaserver-example-advanced</contextPath>
</webApp>
</configuration>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<!-- Tell Maven which Java source version you want to use -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.2</version>
<configuration>
<source>1.7</source>
<target>1.7</target>
</configuration>
</plugin>
<!-- The configuration here tells the WAR plugin to include the FHIR Tester
overlay. You can omit it if you are not using that feature. -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-war-plugin</artifactId>
<configuration>
<overlays>
<overlay>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-testpage-overlay</artifactId>
</overlay>
</overlays>
</configuration>
</plugin>
<!-- This plugin is just a part of the HAPI internal build process, you
do not need to incude it in your own projects -->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<skip>true</skip>
</configuration>
</plugin>
</plugins>
</build>
</project>

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package ca.uhn.fhir.jpa.demo;
public class DerbyInit {
public DerbyInit() throws ClassNotFoundException {
Class.forName("org.apache.derby.jdbc.ClientDriver");
}
}

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package ca.uhn.fhir.jpa.demo;
import java.util.List;
import javax.servlet.ServletException;
import ca.uhn.fhir.context.FhirVersionEnum;
import org.springframework.web.context.ContextLoaderListener;
import org.springframework.web.context.WebApplicationContext;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu1;
import ca.uhn.fhir.jpa.provider.JpaConformanceProviderDstu2;
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu1;
import ca.uhn.fhir.jpa.provider.JpaSystemProviderDstu2;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu2.resource.Bundle;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
import ca.uhn.fhir.rest.server.ETagSupportEnum;
import ca.uhn.fhir.rest.server.EncodingEnum;
import ca.uhn.fhir.rest.server.FifoMemoryPagingProvider;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.RestfulServer;
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
import ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor;
public class JpaServerDemo extends RestfulServer {
private static final long serialVersionUID = 1L;
private WebApplicationContext myAppCtx;
@SuppressWarnings("unchecked")
@Override
protected void initialize() throws ServletException {
super.initialize();
/*
* We want to support FHIR DSTU2 format. This means that the server
* will use the DSTU2 bundle format and other DSTU2 encoding changes.
*
* If you want to use DSTU1 instead, change the following line, and change the 2 occurrences of dstu2 in web.xml to dstu1
*/
FhirVersionEnum fhirVersion = FhirVersionEnum.DSTU2;
setFhirContext(new FhirContext(fhirVersion));
// Get the spring context from the web container (it's declared in web.xml)
myAppCtx = ContextLoaderListener.getCurrentWebApplicationContext();
/*
* The hapi-fhir-server-resourceproviders-dev.xml file is a spring configuration
* file which is automatically generated as a part of hapi-fhir-jpaserver-base and
* contains bean definitions for a resource provider for each resource type
*/
ResourceProviderFactory beans = myAppCtx.getBean("myResourceProvidersDstu2", List.class);
setResourceProviders(beans);
/*
* The system provider implements non-resource-type methods, such as
* transaction, and global history.
*/
Object systemProvider = myAppCtx.getBean("mySystemProviderDstu2", JpaSystemProviderDstu2.class);
setPlainProviders(systemProvider);
/*
* The conformance provider exports the supported resources, search parameters, etc for
* this server. The JPA version adds resource counts to the exported statement, so it
* is a nice addition.
*/
IFhirSystemDao<Bundle> systemDao = myAppCtx.getBean("mySystemDaoDstu2", IFhirSystemDao.class);
JpaConformanceProviderDstu2 confProvider = new JpaConformanceProviderDstu2(this, systemDao);
confProvider.setImplementationDescription("Example Server");
setServerConformanceProvider(confProvider);
/*
* Enable ETag Support (this is already the default)
*/
setETagSupport(ETagSupportEnum.ENABLED);
/*
* This tells the server to use "browser friendly" MIME types if it
* detects that the request is coming from a browser, in the hopes that the
* browser won't just treat the content as a binary payload and try
* to download it (which is what generally happens if you load a
* FHIR URL in a browser).
*
* This means that the server isn't technically complying with the
* FHIR specification for direct browser requests, but this mode
* is very helpful for testing and troubleshooting since it means
* you can look at FHIR URLs directly in a browser.
*/
setUseBrowserFriendlyContentTypes(true);
/*
* Default to XML and pretty printing
*/
setDefaultPrettyPrint(true);
setDefaultResponseEncoding(EncodingEnum.JSON);
/*
* This is a simple paging strategy that keeps the last 10 searches in memory
*/
setPagingProvider(new FifoMemoryPagingProvider(10));
/*
* Load interceptors for the server from Spring (these are defined in hapi-fhir-server-config.xml
*/
List<IServerInterceptor> interceptorBeans = myAppCtx.getBean("myServerInterceptors", List.class);
for (IServerInterceptor interceptor : interceptorBeans) {
this.registerInterceptor(interceptor);
}
}
}

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package ca.uhn.fhir.jpa.demo.entity;
/*
* #%L
* HAPI FHIR JPA Server
* %%
* Copyright (C) 2014 - 2015 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import java.io.Serializable;
import javax.persistence.Column;
import javax.persistence.Entity;
import javax.persistence.GeneratedValue;
import javax.persistence.GenerationType;
import javax.persistence.Id;
import javax.persistence.Table;
//@formatter:off
@Entity()
@Table(name = "CUST_USER")
//@formatter:on
public class User implements Serializable {
private static final long serialVersionUID = 1L;
@GeneratedValue(strategy = GenerationType.AUTO)
@Id
@Column(name = "PID")
private Long myId;
@Column(name = "PASSWORD", length = 200)
private String myPassword;
@Column(name = "USERNAME", length = 200)
private String myUsername;
public Long getId() {
return myId;
}
public String getPassword() {
return myPassword;
}
public String getUsername() {
return myUsername;
}
public void setId(Long theId) {
myId = theId;
}
public void setPassword(String thePassword) {
myPassword = thePassword;
}
public void setUsername(String theUsername) {
myUsername = theUsername;
}
}

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package ca.uhn.fhir.jpa.demo.interceptor;
import javax.persistence.EntityManager;
import javax.persistence.NoResultException;
import javax.persistence.PersistenceContext;
import javax.persistence.TypedQuery;
import javax.servlet.http.HttpServletRequest;
import javax.servlet.http.HttpServletResponse;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.transaction.PlatformTransactionManager;
import org.springframework.transaction.annotation.Propagation;
import org.springframework.transaction.annotation.Transactional;
import ca.uhn.fhir.jpa.demo.entity.User;
import ca.uhn.fhir.rest.server.interceptor.InterceptorAdapter;
public class RequestAuthorizationInterceptor extends InterceptorAdapter {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(RequestAuthorizationInterceptor.class);
@PersistenceContext()
private EntityManager myEntityManager;
@Autowired
private PlatformTransactionManager myPlatformTransactionManager;
@Transactional(propagation = Propagation.REQUIRED)
@Override
public boolean incomingRequestPreProcessed(HttpServletRequest theRequest, HttpServletResponse theResponse) {
String authorization = theResponse.getHeader("Authorization");
TypedQuery<User> q = myEntityManager.createQuery("SELECT u FROM User u WHERE u.myUsername = :username", User.class);
String username = authorization;
q.setParameter("username", username);
try {
User user = q.getSingleResult();
ourLog.info("Found user [{}]: {}", username, user);
} catch (NoResultException e) {
ourLog.info("No user found in user table with username [{}]", username);
}
return true;
}
}

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package ca.uhn.fhir.jpa.demo.svc;
import com.fasterxml.jackson.annotation.JsonProperty;
public class LoginResponse {
@JsonProperty(value = "success")
private boolean mySuccess;
public boolean isSuccess() {
return mySuccess;
}
public void setSuccess(boolean theSuccess) {
mySuccess = theSuccess;
}
}

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package ca.uhn.fhir.jpa.demo.svc;
import org.springframework.web.bind.annotation.RequestMapping;
import org.springframework.web.bind.annotation.RequestMethod;
import org.springframework.web.bind.annotation.RequestParam;
import org.springframework.web.bind.annotation.ResponseBody;
import org.springframework.web.bind.annotation.RestController;
@RestController
public class ServiceController {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ServiceController.class);
public ServiceController() {
ourLog.info("Starting service controller");
}
@RequestMapping(value = "/login", method = {RequestMethod.GET, RequestMethod.POST} )
public @ResponseBody LoginResponse handleFormUpload(@RequestParam("name") String theUsername) {
ourLog.info("Login request for user[{}]", theUsername);
LoginResponse retVal = new LoginResponse();
retVal.setSuccess(true);
return retVal;
}
}

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<configuration scan="true" scanPeriod="30 seconds">
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>INFO</level>
</filter>
<encoder>
<pattern>%d{yyyy-MM-dd HH:mm:ss.SSS} [%thread] %-5level %logger{36} [%file:%line] %msg%n</pattern>
</encoder>
</appender>
<root level="INFO">
<appender-ref ref="STDOUT" />
</root>
</configuration>

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<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"
xmlns:p="http://www.springframework.org/schema/p" xmlns:tx="http://www.springframework.org/schema/tx" xmlns:task="http://www.springframework.org/schema/task" xmlns:util="http://www.springframework.org/schema/util"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.0.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx.xsd
http://www.springframework.org/schema/task http://www.springframework.org/schema/task/spring-task.xsd
http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-2.0.xsd
"
default-autowire="no" default-lazy-init="false">
<context:annotation-config />
<context:mbean-server />
<bean id="myDaoConfig" class="ca.uhn.fhir.jpa.dao.DaoConfig">
</bean>
<bean id="myTxManager" class="org.springframework.orm.jpa.JpaTransactionManager">
<property name="entityManagerFactory" ref="entityManagerFactory" />
</bean>
<tx:annotation-driven transaction-manager="myTxManager" />
<util:list id="myServerInterceptors">
<ref bean="authorizationInterceptor"/>
<ref bean="loggingInterceptor"/>
</util:list>
<bean id="authorizationInterceptor" class="ca.uhn.fhir.jpa.demo.interceptor.RequestAuthorizationInterceptor">
</bean>
<!--
Do some fancy logging to create a nice access log that has details
about each incoming request.
-->
<bean id="loggingInterceptor" class="ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor">
<property name="loggerName" value="fhirtest.access"/>
<property name="messageFormat"
value="Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] Operation[${operationType} ${idOrResourceName}] UA[${requestHeader.user-agent}] Params[${requestParameters}]"/>
</bean>
</beans>

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<beans xmlns="http://www.springframework.org/schema/beans" xmlns:mvc="http://www.springframework.org/schema/mvc" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:tx="http://www.springframework.org/schema/tx" xmlns:context="http://www.springframework.org/schema/context" xmlns:security="http://www.springframework.org/schema/security"
xmlns:oauth="http://www.springframework.org/schema/security/oauth2"
xsi:schemaLocation="http://www.springframework.org/schema/security/oauth2 http://www.springframework.org/schema/security/spring-security-oauth2-2.0.xsd
http://www.springframework.org/schema/mvc http://www.springframework.org/schema/mvc/spring-mvc-3.2.xsd
http://www.springframework.org/schema/security http://www.springframework.org/schema/security/spring-security-3.1.xsd
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.2.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx-3.2.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.2.xsd">
<!--
This file configures the database connection for the HAPI JPA Server.
-->
<!--
The following bean configures the database connection. The 'url' property value
of "jdbc:derby:directory:jpaserver_derby_files;create=true" indicates that the
server should save resources in a directory called "jpaserver_derby_files".
A URL to a remote database could also be placed here, along with login credentials
and other properties supported by BasicDataSource.
-->
<bean id="myPersistenceDataSource" class="org.apache.commons.dbcp2.BasicDataSource" destroy-method="close">
<property name="url" value="jdbc:derby:directory:jpaserver_derby_files;create=true" />
<property name="driverClassName" value="org.apache.derby.jdbc.EmbeddedDriver"></property>
<property name="username" value=""/>
<property name="password" value=""/>
</bean>
<!--
Hibernate can be configured with other dialects if you wish to connect to another
database (e.g. Postgres). Consult the Hibernate documentation to see a list of
available dialects.
-->
<bean id="entityManagerFactory" class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
<property name="dataSource" ref="myPersistenceDataSource" />
<!--
<property name="persistenceXmlLocation" value="classpath:META-INF/fhirtest_persistence.xml" />
<property name="persistenceUnitName" value="FHIR_UT" />
-->
<property name="packagesToScan">
<array>
<value type="java.lang.String">ca.uhn.fhir.jpa.entity</value>
<value type="java.lang.String">ca.uhn.fhir.jpa.model.entity</value>
<value type="java.lang.String">ca.uhn.fhir.jpa.demo.entity</value>
</array>
</property>
<property name="jpaVendorAdapter">
<bean class="org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter">
<property name="showSql" value="false" />
<property name="generateDdl" value="true" />
<property name="databasePlatform" value="ca.uhn.fhir.jpa.util.DerbyTenSevenHapiFhirDialect" />
</bean>
</property>
</bean>
</beans>

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<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:mvc="http://www.springframework.org/schema/mvc" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:tx="http://www.springframework.org/schema/tx" xmlns:context="http://www.springframework.org/schema/context" xmlns:security="http://www.springframework.org/schema/security"
xmlns:oauth="http://www.springframework.org/schema/security/oauth2"
xsi:schemaLocation="http://www.springframework.org/schema/security/oauth2 http://www.springframework.org/schema/security/spring-security-oauth2-2.0.xsd
http://www.springframework.org/schema/mvc http://www.springframework.org/schema/mvc/spring-mvc-3.2.xsd
http://www.springframework.org/schema/security http://www.springframework.org/schema/security/spring-security-3.1.xsd
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.2.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx-3.2.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.2.xsd">
<bean class="ca.uhn.fhir.to.TesterConfig">
<property name="servers">
<list>
<value>home , DSTU2 , Local Server , ${serverBase}/fhir</value>
</list>
</property>
</bean>
<bean id="fhirContext" class="ca.uhn.fhir.context.FhirContext" factory-method="forDstu2">
</bean>
</beans>

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<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"
xmlns:p="http://www.springframework.org/schema/p" xmlns:tx="http://www.springframework.org/schema/tx"
xmlns:task="http://www.springframework.org/schema/task" xmlns:util="http://www.springframework.org/schema/util"
xmlns:mvc="http://www.springframework.org/schema/mvc"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.0.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx.xsd
http://www.springframework.org/schema/task http://www.springframework.org/schema/task/spring-task.xsd
http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-2.0.xsd
http://www.springframework.org/schema/mvc http://www.springframework.org/schema/mvc/spring-mvc.xsd
"
default-autowire="no" default-lazy-init="false">
<context:annotation-config/>
<context:mbean-server/>
<mvc:annotation-driven>
<mvc:message-converters register-defaults="false">
<bean id="jacksonMessageConverter"
class="org.springframework.http.converter.json.MappingJackson2HttpMessageConverter"/>
</mvc:message-converters>
</mvc:annotation-driven>
<context:component-scan base-package="ca.uhn.fhir.jpa.demo.svc"></context:component-scan>
</beans>

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@ -1,67 +0,0 @@
<!DOCTYPE html>
<html lang="en">
<head th:include="tmpl-head :: head">
<title>About This Server</title>
</head>
<body>
<form action="" method="get" id="outerForm">
<div th:replace="tmpl-navbar-top :: top" ></div>
<div class="container-fluid">
<div class="row">
<div th:replace="tmpl-navbar-left :: left" ></div>
<div class="col-sm-9 col-sm-offset-3 col-md-9 col-md-offset-3 main">
<div th:replace="tmpl-banner :: banner"></div>
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">About This Server</h3>
</div>
<div class="panel-body">
<div class="pull-right">
<object data="img/fhirtest-architecture.svg" width="383" height="369" type="image/svg+xml"></object>
</div>
<p>
This server provides a nearly complete implementation of the FHIR Specification
using a 100% open source software stack. It is hosted by University Health Network.
</p>
<p>
The architecture in use here is shown in the image on the right. This server is built
from a number of modules of the
<a href="https://github.com/jamesagnew/hapi-fhir/">HAPI FHIR</a>
project, which is a 100% open-source (Apache 2.0 Licensed) Java based
implementation of the FHIR specification.
</p>
<p>
</p>
</div>
</div>
<div class="panel panel-default">
<div class="panel-heading">
<h3 class="panel-title">Data On This Server</h3>
</div>
<div class="panel-body">
<p>
This server is regularly loaded with a standard set of test data sourced
from UHN's own testing environment. Do not use this server to store any data
that you will need later, as we will be regularly resetting it.
</p>
<p>
This is not a production server and it provides no privacy. Do not store any
confidential data here.
</p>
</div>
</div>
</div>
</div>
</div>
<div th:replace="tmpl-footer :: footer" ></div>
</form>
</body>
</html>

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@ -1,16 +0,0 @@
<!DOCTYPE html>
<html lang="en">
<div th:fragment="footer">
<script>
(function(i,s,o,g,r,a,m){i['GoogleAnalyticsObject']=r;i[r]=i[r]||function(){
(i[r].q=i[r].q||[]).push(arguments)},i[r].l=1*new Date();a=s.createElement(o),
m=s.getElementsByTagName(o)[0];a.async=1;a.src=g;m.parentNode.insertBefore(a,m)
})(window,document,'script','//www.google-analytics.com/analytics.js','ga');
ga('create', 'UA-1395874-6', 'auto');
ga('require', 'displayfeatures');
ga('require', 'linkid', 'linkid.js');
ga('send', 'pageview');
</script>
</div>
</html>

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@ -1,52 +0,0 @@
<!DOCTYPE html>
<html lang="en">
<div th:fragment="banner" class="well">
<th:block th:if="${serverId} == 'home'">
<p>
This is the home for the FHIR test server operated by
<a href="http://uhn.ca">University Health Network</a>. This server
(and the testing application you are currently using to access it)
is entirely built using
<a href="https://github.com/jamesagnew/hapi-fhir">HAPI-FHIR</a>,
a 100% open-source Java implementation of the
<a href="http://hl7.org/implement/standards/fhir/">FHIR specification</a>.
</p>
<p>
Here are some things you might wish to try:
</p>
<ul>
<li>
View a
<a href="http://fhirtest.uhn.ca/search?serverId=home&amp;encoding=json&amp;pretty=true&amp;resource=Patient&amp;param.0.type=string&amp;param.0.name=_id&amp;param.0.0=&amp;resource-search-limit=">list of patients</a>
on this server.
</li>
<li>
Construct a
<a href="http://fhirtest.uhn.ca/resource?serverId=home&amp;encoding=json&amp;pretty=true&amp;resource=Patient">search query</a>
on this server.
</li>
<li>
Access a
<a href="http://fhirtest.uhn.ca/home?serverId=furore">different server</a>
(use the <b>Server</b> menu at the top of the page to see a list of public FHIR servers)
</li>
</ul>
</th:block>
<th:block th:if="${serverId} != 'home'">
<p>
You are accessing the public FHIR server
<b th:text="${baseName}"/>. This server is hosted elsewhere on the internet
but is being accessed using the HAPI client implementation.
</p>
</th:block>
<p>
<b style="color: red;">
<span class="glyphicon glyphicon-warning-sign"/>
This is not a production server!
</b>
Do not store any information here that contains personal health information
or any other confidential information. This server will be regularly purged
and reloaded with fixed test data.
</p>
</div>
</html>

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@ -1,104 +0,0 @@
<web-app xmlns="http://java.sun.com/xml/ns/javaee"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
version="3.0" xsi:schemaLocation="http://java.sun.com/xml/ns/javaee ./xsd/web-app_3_0.xsd">
<listener>
<listener-class>org.springframework.web.context.ContextLoaderListener</listener-class>
</listener>
<context-param>
<param-name>contextConfigLocation</param-name>
<param-value>
classpath:hapi-fhir-server-resourceproviders-dstu2.xml
/WEB-INF/hapi-fhir-server-database-config.xml
/WEB-INF/hapi-fhir-server-config.xml
/WEB-INF/hapi-fhir-tester-application-context.xml
/WEB-INF/hapi-fhir-tester-config.xml
/WEB-INF/non-fhir-services-config.xml
</param-value>
</context-param>
<!-- Servlets -->
<servlet>
<servlet-name>spring</servlet-name>
<servlet-class>org.springframework.web.servlet.DispatcherServlet</servlet-class>
<init-param>
<param-name>contextConfigLocation</param-name>
<param-value>
/WEB-INF/hapi-fhir-tester-application-context.xml
/WEB-INF/hapi-fhir-tester-config.xml
</param-value>
</init-param>
<load-on-startup>2</load-on-startup>
</servlet>
<servlet>
<servlet-name>fhirServlet</servlet-name>
<servlet-class>ca.uhn.fhir.jpa.demo.JpaServerDemo</servlet-class>
<init-param>
<param-name>ImplementationDescription</param-name>
<param-value>FHIR JPA Server</param-value>
</init-param>
<load-on-startup>1</load-on-startup>
</servlet>
<servlet-mapping>
<servlet-name>fhirServlet</servlet-name>
<url-pattern>/fhir/*</url-pattern>
</servlet-mapping>
<servlet-mapping>
<servlet-name>spring</servlet-name>
<url-pattern>/</url-pattern>
</servlet-mapping>
<!-- This filters provide support for Cross Origin Resource Sharing (CORS) -->
<filter>
<filter-name>CORS Filter</filter-name>
<filter-class>org.ebaysf.web.cors.CORSFilter</filter-class>
<init-param>
<description>A comma separated list of allowed origins. Note: An '*' cannot be used for an allowed origin when using credentials.</description>
<param-name>cors.allowed.origins</param-name>
<param-value>*</param-value>
</init-param>
<init-param>
<description>A comma separated list of HTTP verbs, using which a CORS request can be made.</description>
<param-name>cors.allowed.methods</param-name>
<param-value>GET,POST,PUT,DELETE,OPTIONS</param-value>
</init-param>
<init-param>
<description>A comma separated list of allowed headers when making a non simple CORS request.</description>
<param-name>cors.allowed.headers</param-name>
<param-value>X-FHIR-Starter,Origin,Accept,X-Requested-With,Content-Type,Access-Control-Request-Method,Access-Control-Request-Headers</param-value>
</init-param>
<init-param>
<description>A comma separated list non-standard response headers that will be exposed to XHR2 object.</description>
<param-name>cors.exposed.headers</param-name>
<param-value>Location,Content-Location</param-value>
</init-param>
<init-param>
<description>A flag that suggests if CORS is supported with cookies</description>
<param-name>cors.support.credentials</param-name>
<param-value>true</param-value>
</init-param>
<init-param>
<description>A flag to control logging</description>
<param-name>cors.logging.enabled</param-name>
<param-value>true</param-value>
</init-param>
<init-param>
<description>Indicates how long (in seconds) the results of a preflight request can be cached in a preflight result cache.</description>
<param-name>cors.preflight.maxage</param-name>
<param-value>300</param-value>
</init-param>
</filter>
<filter-mapping>
<filter-name>CORS Filter</filter-name>
<url-pattern>/*</url-pattern>
</filter-mapping>
</web-app>

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@ -1,389 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<xsd:schema xmlns="http://www.w3.org/2001/XMLSchema"
targetNamespace="http://java.sun.com/xml/ns/javaee"
xmlns:javaee="http://java.sun.com/xml/ns/javaee"
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
elementFormDefault="qualified"
attributeFormDefault="unqualified"
version="2.2">
<xsd:annotation>
<xsd:documentation>
DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
Copyright 2003-2009 Sun Microsystems, Inc. All rights reserved.
The contents of this file are subject to the terms of either the
GNU General Public License Version 2 only ("GPL") or the Common
Development and Distribution License("CDDL") (collectively, the
"License"). You may not use this file except in compliance with
the License. You can obtain a copy of the License at
https://glassfish.dev.java.net/public/CDDL+GPL.html or
glassfish/bootstrap/legal/LICENSE.txt. See the License for the
specific language governing permissions and limitations under the
License.
When distributing the software, include this License Header
Notice in each file and include the License file at
glassfish/bootstrap/legal/LICENSE.txt. Sun designates this
particular file as subject to the "Classpath" exception as
provided by Sun in the GPL Version 2 section of the License file
that accompanied this code. If applicable, add the following
below the License Header, with the fields enclosed by brackets []
replaced by your own identifying information:
"Portions Copyrighted [year] [name of copyright owner]"
Contributor(s):
If you wish your version of this file to be governed by only the
CDDL or only the GPL Version 2, indicate your decision by adding
"[Contributor] elects to include this software in this
distribution under the [CDDL or GPL Version 2] license." If you
don't indicate a single choice of license, a recipient has the
option to distribute your version of this file under either the
CDDL, the GPL Version 2 or to extend the choice of license to its
licensees as provided above. However, if you add GPL Version 2
code and therefore, elected the GPL Version 2 license, then the
option applies only if the new code is made subject to such
option by the copyright holder.
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
This is the XML Schema for the JSP 2.2 deployment descriptor
types. The JSP 2.2 schema contains all the special
structures and datatypes that are necessary to use JSP files
from a web application.
The contents of this schema is used by the web-common_3_0.xsd
file to define JSP specific content.
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
The following conventions apply to all Java EE
deployment descriptor elements unless indicated otherwise.
- In elements that specify a pathname to a file within the
same JAR file, relative filenames (i.e., those not
starting with "/") are considered relative to the root of
the JAR file's namespace. Absolute filenames (i.e., those
starting with "/") also specify names in the root of the
JAR file's namespace. In general, relative names are
preferred. The exception is .war files where absolute
names are preferred for consistency with the Servlet API.
</xsd:documentation>
</xsd:annotation>
<xsd:include schemaLocation="javaee_6.xsd"/>
<!-- **************************************************** -->
<xsd:complexType name="jsp-configType">
<xsd:annotation>
<xsd:documentation>
The jsp-configType is used to provide global configuration
information for the JSP files in a web application. It has
two subelements, taglib and jsp-property-group.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:element name="taglib"
type="javaee:taglibType"
minOccurs="0"
maxOccurs="unbounded"/>
<xsd:element name="jsp-property-group"
type="javaee:jsp-property-groupType"
minOccurs="0"
maxOccurs="unbounded"/>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="jsp-fileType">
<xsd:annotation>
<xsd:documentation>
The jsp-file element contains the full path to a JSP file
within the web application beginning with a `/'.
</xsd:documentation>
</xsd:annotation>
<xsd:simpleContent>
<xsd:restriction base="javaee:pathType"/>
</xsd:simpleContent>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="jsp-property-groupType">
<xsd:annotation>
<xsd:documentation>
The jsp-property-groupType is used to group a number of
files so they can be given global property information.
All files so described are deemed to be JSP files. The
following additional properties can be described:
- Control whether EL is ignored.
- Control whether scripting elements are invalid.
- Indicate pageEncoding information.
- Indicate that a resource is a JSP document (XML).
- Prelude and Coda automatic includes.
- Control whether the character sequence #{ is allowed
when used as a String literal.
- Control whether template text containing only
whitespaces must be removed from the response output.
- Indicate the default contentType information.
- Indicate the default buffering model for JspWriter
- Control whether error should be raised for the use of
undeclared namespaces in a JSP page.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:group ref="javaee:descriptionGroup"/>
<xsd:element name="url-pattern"
type="javaee:url-patternType"
maxOccurs="unbounded"/>
<xsd:element name="el-ignored"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
Can be used to easily set the isELIgnored
property of a group of JSP pages. By default, the
EL evaluation is enabled for Web Applications using
a Servlet 2.4 or greater web.xml, and disabled
otherwise.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="page-encoding"
type="javaee:string"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The valid values of page-encoding are those of the
pageEncoding page directive. It is a
translation-time error to name different encodings
in the pageEncoding attribute of the page directive
of a JSP page and in a JSP configuration element
matching the page. It is also a translation-time
error to name different encodings in the prolog
or text declaration of a document in XML syntax and
in a JSP configuration element matching the document.
It is legal to name the same encoding through
mulitple mechanisms.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="scripting-invalid"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
Can be used to easily disable scripting in a
group of JSP pages. By default, scripting is
enabled.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="is-xml"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
If true, denotes that the group of resources
that match the URL pattern are JSP documents,
and thus must be interpreted as XML documents.
If false, the resources are assumed to not
be JSP documents, unless there is another
property group that indicates otherwise.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="include-prelude"
type="javaee:pathType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
The include-prelude element is a context-relative
path that must correspond to an element in the
Web Application. When the element is present,
the given path will be automatically included (as
in an include directive) at the beginning of each
JSP page in this jsp-property-group.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="include-coda"
type="javaee:pathType"
minOccurs="0"
maxOccurs="unbounded">
<xsd:annotation>
<xsd:documentation>
The include-coda element is a context-relative
path that must correspond to an element in the
Web Application. When the element is present,
the given path will be automatically included (as
in an include directive) at the end of each
JSP page in this jsp-property-group.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="deferred-syntax-allowed-as-literal"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The character sequence #{ is reserved for EL expressions.
Consequently, a translation error occurs if the #{
character sequence is used as a String literal, unless
this element is enabled (true). Disabled (false) by
default.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="trim-directive-whitespaces"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
Indicates that template text containing only whitespaces
must be removed from the response output. It has no
effect on JSP documents (XML syntax). Disabled (false)
by default.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="default-content-type"
type="javaee:string"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The valid values of default-content-type are those of the
contentType page directive. It specifies the default
response contentType if the page directive does not include
a contentType attribute.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="buffer"
type="javaee:string"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The valid values of buffer are those of the
buffer page directive. It specifies if buffering should be
used for the output to response, and if so, the size of the
buffer to use.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="error-on-undeclared-namespace"
type="javaee:true-falseType"
minOccurs="0">
<xsd:annotation>
<xsd:documentation>
The default behavior when a tag with unknown namespace is used
in a JSP page (regular syntax) is to silently ignore it. If
set to true, then an error must be raised during the translation
time when an undeclared tag is used in a JSP page. Disabled
(false) by default.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
<!-- **************************************************** -->
<xsd:complexType name="taglibType">
<xsd:annotation>
<xsd:documentation>
The taglibType defines the syntax for declaring in
the deployment descriptor that a tag library is
available to the application. This can be done
to override implicit map entries from TLD files and
from the container.
</xsd:documentation>
</xsd:annotation>
<xsd:sequence>
<xsd:element name="taglib-uri"
type="javaee:string">
<xsd:annotation>
<xsd:documentation>
A taglib-uri element describes a URI identifying a
tag library used in the web application. The body
of the taglib-uri element may be either an
absolute URI specification, or a relative URI.
There should be no entries in web.xml with the
same taglib-uri value.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
<xsd:element name="taglib-location"
type="javaee:pathType">
<xsd:annotation>
<xsd:documentation>
the taglib-location element contains the location
(as a resource relative to the root of the web
application) where to find the Tag Library
Description file for the tag library.
</xsd:documentation>
</xsd:annotation>
</xsd:element>
</xsd:sequence>
<xsd:attribute name="id"
type="xsd:ID"/>
</xsd:complexType>
</xsd:schema>

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@ -1,272 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<xsd:schema xmlns="http://www.w3.org/2001/XMLSchema"
targetNamespace="http://java.sun.com/xml/ns/javaee"
xmlns:javaee="http://java.sun.com/xml/ns/javaee"
xmlns:xsd="http://www.w3.org/2001/XMLSchema"
elementFormDefault="qualified"
attributeFormDefault="unqualified"
version="3.0">
<xsd:annotation>
<xsd:documentation>
DO NOT ALTER OR REMOVE COPYRIGHT NOTICES OR THIS HEADER.
Copyright 2003-2009 Sun Microsystems, Inc. All rights reserved.
The contents of this file are subject to the terms of either the
GNU General Public License Version 2 only ("GPL") or the Common
Development and Distribution License("CDDL") (collectively, the
"License"). You may not use this file except in compliance with
the License. You can obtain a copy of the License at
https://glassfish.dev.java.net/public/CDDL+GPL.html or
glassfish/bootstrap/legal/LICENSE.txt. See the License for the
specific language governing permissions and limitations under the
License.
When distributing the software, include this License Header
Notice in each file and include the License file at
glassfish/bootstrap/legal/LICENSE.txt. Sun designates this
particular file as subject to the "Classpath" exception as
provided by Sun in the GPL Version 2 section of the License file
that accompanied this code. If applicable, add the following
below the License Header, with the fields enclosed by brackets []
replaced by your own identifying information:
"Portions Copyrighted [year] [name of copyright owner]"
Contributor(s):
If you wish your version of this file to be governed by only the
CDDL or only the GPL Version 2, indicate your decision by adding
"[Contributor] elects to include this software in this
distribution under the [CDDL or GPL Version 2] license." If you
don't indicate a single choice of license, a recipient has the
option to distribute your version of this file under either the
CDDL, the GPL Version 2 or to extend the choice of license to its
licensees as provided above. However, if you add GPL Version 2
code and therefore, elected the GPL Version 2 license, then the
option applies only if the new code is made subject to such
option by the copyright holder.
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
<![CDATA[[
This is the XML Schema for the Servlet 3.0 deployment descriptor.
The deployment descriptor must be named "WEB-INF/web.xml" in the
web application's war file. All Servlet deployment descriptors
must indicate the web application schema by using the Java EE
namespace:
http://java.sun.com/xml/ns/javaee
and by indicating the version of the schema by
using the version element as shown below:
<web-app xmlns="http://java.sun.com/xml/ns/javaee"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="..."
version="3.0">
...
</web-app>
The instance documents may indicate the published version of
the schema using the xsi:schemaLocation attribute for Java EE
namespace with the following location:
http://java.sun.com/xml/ns/javaee/web-app_3_0.xsd
]]>
</xsd:documentation>
</xsd:annotation>
<xsd:annotation>
<xsd:documentation>
The following conventions apply to all Java EE
deployment descriptor elements unless indicated otherwise.
- In elements that specify a pathname to a file within the
same JAR file, relative filenames (i.e., those not
starting with "/") are considered relative to the root of
the JAR file's namespace. Absolute filenames (i.e., those
starting with "/") also specify names in the root of the
JAR file's namespace. In general, relative names are
preferred. The exception is .war files where absolute
names are preferred for consistency with the Servlet API.
</xsd:documentation>
</xsd:annotation>
<xsd:include schemaLocation="web-common_3_0.xsd"/>
<!-- **************************************************** -->
<xsd:element name="web-app"
type="javaee:web-appType">
<xsd:annotation>
<xsd:documentation>
The web-app element is the root of the deployment
descriptor for a web application. Note that the sub-elements
of this element can be in the arbitrary order. Because of
that, the multiplicity of the elements of distributable,
session-config, welcome-file-list, jsp-config, login-config,
and locale-encoding-mapping-list was changed from "?" to "*"
in this schema. However, the deployment descriptor instance
file must not contain multiple elements of session-config,
jsp-config, and login-config. When there are multiple elements of
welcome-file-list or locale-encoding-mapping-list, the container
must concatenate the element contents. The multiple occurence
of the element distributable is redundant and the container
treats that case exactly in the same way when there is only
one distributable.
</xsd:documentation>
</xsd:annotation>
<xsd:unique name="web-common-servlet-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The servlet element contains the name of a servlet.
The name must be unique within the web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:servlet"/>
<xsd:field xpath="javaee:servlet-name"/>
</xsd:unique>
<xsd:unique name="web-common-filter-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The filter element contains the name of a filter.
The name must be unique within the web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:filter"/>
<xsd:field xpath="javaee:filter-name"/>
</xsd:unique>
<xsd:unique name="web-common-ejb-local-ref-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The ejb-local-ref-name element contains the name of an EJB
reference. The EJB reference is an entry in the web
application's environment and is relative to the
java:comp/env context. The name must be unique within
the web application.
It is recommended that name is prefixed with "ejb/".
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:ejb-local-ref"/>
<xsd:field xpath="javaee:ejb-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-ejb-ref-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The ejb-ref-name element contains the name of an EJB
reference. The EJB reference is an entry in the web
application's environment and is relative to the
java:comp/env context. The name must be unique within
the web application.
It is recommended that name is prefixed with "ejb/".
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:ejb-ref"/>
<xsd:field xpath="javaee:ejb-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-resource-env-ref-uniqueness">
<xsd:annotation>
<xsd:documentation>
The resource-env-ref-name element specifies the name of
a resource environment reference; its value is the
environment entry name used in the web application code.
The name is a JNDI name relative to the java:comp/env
context and must be unique within a web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:resource-env-ref"/>
<xsd:field xpath="javaee:resource-env-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-message-destination-ref-uniqueness">
<xsd:annotation>
<xsd:documentation>
The message-destination-ref-name element specifies the name of
a message destination reference; its value is the
environment entry name used in the web application code.
The name is a JNDI name relative to the java:comp/env
context and must be unique within a web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:message-destination-ref"/>
<xsd:field xpath="javaee:message-destination-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-res-ref-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The res-ref-name element specifies the name of a
resource manager connection factory reference. The name
is a JNDI name relative to the java:comp/env context.
The name must be unique within a web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:resource-ref"/>
<xsd:field xpath="javaee:res-ref-name"/>
</xsd:unique>
<xsd:unique name="web-common-env-entry-name-uniqueness">
<xsd:annotation>
<xsd:documentation>
The env-entry-name element contains the name of a web
application's environment entry. The name is a JNDI
name relative to the java:comp/env context. The name
must be unique within a web application.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:env-entry"/>
<xsd:field xpath="javaee:env-entry-name"/>
</xsd:unique>
<xsd:key name="web-common-role-name-key">
<xsd:annotation>
<xsd:documentation>
A role-name-key is specified to allow the references
from the security-role-refs.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:security-role"/>
<xsd:field xpath="javaee:role-name"/>
</xsd:key>
<xsd:keyref name="web-common-role-name-references"
refer="javaee:web-common-role-name-key">
<xsd:annotation>
<xsd:documentation>
The keyref indicates the references from
security-role-ref to a specified role-name.
</xsd:documentation>
</xsd:annotation>
<xsd:selector xpath="javaee:servlet/javaee:security-role-ref"/>
<xsd:field xpath="javaee:role-link"/>
</xsd:keyref>
</xsd:element>
</xsd:schema>

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@ -1,287 +0,0 @@
<?xml version='1.0'?>
<?xml-stylesheet href="../2008/09/xsd.xsl" type="text/xsl"?>
<xs:schema targetNamespace="http://www.w3.org/XML/1998/namespace"
xmlns:xs="http://www.w3.org/2001/XMLSchema"
xmlns ="http://www.w3.org/1999/xhtml"
xml:lang="en">
<xs:annotation>
<xs:documentation>
<div>
<h1>About the XML namespace</h1>
<div class="bodytext">
<p>
This schema document describes the XML namespace, in a form
suitable for import by other schema documents.
</p>
<p>
See <a href="http://www.w3.org/XML/1998/namespace.html">
http://www.w3.org/XML/1998/namespace.html</a> and
<a href="http://www.w3.org/TR/REC-xml">
http://www.w3.org/TR/REC-xml</a> for information
about this namespace.
</p>
<p>
Note that local names in this namespace are intended to be
defined only by the World Wide Web Consortium or its subgroups.
The names currently defined in this namespace are listed below.
They should not be used with conflicting semantics by any Working
Group, specification, or document instance.
</p>
<p>
See further below in this document for more information about <a
href="#usage">how to refer to this schema document from your own
XSD schema documents</a> and about <a href="#nsversioning">the
namespace-versioning policy governing this schema document</a>.
</p>
</div>
</div>
</xs:documentation>
</xs:annotation>
<xs:attribute name="lang">
<xs:annotation>
<xs:documentation>
<div>
<h3>lang (as an attribute name)</h3>
<p>
denotes an attribute whose value
is a language code for the natural language of the content of
any element; its value is inherited. This name is reserved
by virtue of its definition in the XML specification.</p>
</div>
<div>
<h4>Notes</h4>
<p>
Attempting to install the relevant ISO 2- and 3-letter
codes as the enumerated possible values is probably never
going to be a realistic possibility.
</p>
<p>
See BCP 47 at <a href="http://www.rfc-editor.org/rfc/bcp/bcp47.txt">
http://www.rfc-editor.org/rfc/bcp/bcp47.txt</a>
and the IANA language subtag registry at
<a href="http://www.iana.org/assignments/language-subtag-registry">
http://www.iana.org/assignments/language-subtag-registry</a>
for further information.
</p>
<p>
The union allows for the 'un-declaration' of xml:lang with
the empty string.
</p>
</div>
</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:union memberTypes="xs:language">
<xs:simpleType>
<xs:restriction base="xs:string">
<xs:enumeration value=""/>
</xs:restriction>
</xs:simpleType>
</xs:union>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="space">
<xs:annotation>
<xs:documentation>
<div>
<h3>space (as an attribute name)</h3>
<p>
denotes an attribute whose
value is a keyword indicating what whitespace processing
discipline is intended for the content of the element; its
value is inherited. This name is reserved by virtue of its
definition in the XML specification.</p>
</div>
</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:NCName">
<xs:enumeration value="default"/>
<xs:enumeration value="preserve"/>
</xs:restriction>
</xs:simpleType>
</xs:attribute>
<xs:attribute name="base" type="xs:anyURI"> <xs:annotation>
<xs:documentation>
<div>
<h3>base (as an attribute name)</h3>
<p>
denotes an attribute whose value
provides a URI to be used as the base for interpreting any
relative URIs in the scope of the element on which it
appears; its value is inherited. This name is reserved
by virtue of its definition in the XML Base specification.</p>
<p>
See <a
href="http://www.w3.org/TR/xmlbase/">http://www.w3.org/TR/xmlbase/</a>
for information about this attribute.
</p>
</div>
</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attribute name="id" type="xs:ID">
<xs:annotation>
<xs:documentation>
<div>
<h3>id (as an attribute name)</h3>
<p>
denotes an attribute whose value
should be interpreted as if declared to be of type ID.
This name is reserved by virtue of its definition in the
xml:id specification.</p>
<p>
See <a
href="http://www.w3.org/TR/xml-id/">http://www.w3.org/TR/xml-id/</a>
for information about this attribute.
</p>
</div>
</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attributeGroup name="specialAttrs">
<xs:attribute ref="xml:base"/>
<xs:attribute ref="xml:lang"/>
<xs:attribute ref="xml:space"/>
<xs:attribute ref="xml:id"/>
</xs:attributeGroup>
<xs:annotation>
<xs:documentation>
<div>
<h3>Father (in any context at all)</h3>
<div class="bodytext">
<p>
denotes Jon Bosak, the chair of
the original XML Working Group. This name is reserved by
the following decision of the W3C XML Plenary and
XML Coordination groups:
</p>
<blockquote>
<p>
In appreciation for his vision, leadership and
dedication the W3C XML Plenary on this 10th day of
February, 2000, reserves for Jon Bosak in perpetuity
the XML name "xml:Father".
</p>
</blockquote>
</div>
</div>
</xs:documentation>
</xs:annotation>
<xs:annotation>
<xs:documentation>
<div xml:id="usage" id="usage">
<h2><a name="usage">About this schema document</a></h2>
<div class="bodytext">
<p>
This schema defines attributes and an attribute group suitable
for use by schemas wishing to allow <code>xml:base</code>,
<code>xml:lang</code>, <code>xml:space</code> or
<code>xml:id</code> attributes on elements they define.
</p>
<p>
To enable this, such a schema must import this schema for
the XML namespace, e.g. as follows:
</p>
<pre>
&lt;schema . . .>
. . .
&lt;import namespace="http://www.w3.org/XML/1998/namespace"
schemaLocation="http://www.w3.org/2001/xml.xsd"/>
</pre>
<p>
or
</p>
<pre>
&lt;import namespace="http://www.w3.org/XML/1998/namespace"
schemaLocation="http://www.w3.org/2009/01/xml.xsd"/>
</pre>
<p>
Subsequently, qualified reference to any of the attributes or the
group defined below will have the desired effect, e.g.
</p>
<pre>
&lt;type . . .>
. . .
&lt;attributeGroup ref="xml:specialAttrs"/>
</pre>
<p>
will define a type which will schema-validate an instance element
with any of those attributes.
</p>
</div>
</div>
</xs:documentation>
</xs:annotation>
<xs:annotation>
<xs:documentation>
<div id="nsversioning" xml:id="nsversioning">
<h2><a name="nsversioning">Versioning policy for this schema document</a></h2>
<div class="bodytext">
<p>
In keeping with the XML Schema WG's standard versioning
policy, this schema document will persist at
<a href="http://www.w3.org/2009/01/xml.xsd">
http://www.w3.org/2009/01/xml.xsd</a>.
</p>
<p>
At the date of issue it can also be found at
<a href="http://www.w3.org/2001/xml.xsd">
http://www.w3.org/2001/xml.xsd</a>.
</p>
<p>
The schema document at that URI may however change in the future,
in order to remain compatible with the latest version of XML
Schema itself, or with the XML namespace itself. In other words,
if the XML Schema or XML namespaces change, the version of this
document at <a href="http://www.w3.org/2001/xml.xsd">
http://www.w3.org/2001/xml.xsd
</a>
will change accordingly; the version at
<a href="http://www.w3.org/2009/01/xml.xsd">
http://www.w3.org/2009/01/xml.xsd
</a>
will not change.
</p>
<p>
Previous dated (and unchanging) versions of this schema
document are at:
</p>
<ul>
<li><a href="http://www.w3.org/2009/01/xml.xsd">
http://www.w3.org/2009/01/xml.xsd</a></li>
<li><a href="http://www.w3.org/2007/08/xml.xsd">
http://www.w3.org/2007/08/xml.xsd</a></li>
<li><a href="http://www.w3.org/2004/10/xml.xsd">
http://www.w3.org/2004/10/xml.xsd</a></li>
<li><a href="http://www.w3.org/2001/03/xml.xsd">
http://www.w3.org/2001/03/xml.xsd</a></li>
</ul>
</div>
</div>
</xs:documentation>
</xs:annotation>
</xs:schema>

View File

@ -1,32 +0,0 @@
package ca.uhn.fhir.jpa.demo;
import org.junit.AfterClass;
import org.junit.BeforeClass;
import org.junit.Test;
import org.springframework.context.support.FileSystemXmlApplicationContext;
public class ServiceTest {
private static FileSystemXmlApplicationContext ourAppCtx;
@BeforeClass
public static void beforeClass() {
ourAppCtx = new FileSystemXmlApplicationContext(
"src/test/resources/test-hapi-fhir-server-database-config.xml",
"src/main/webapp/WEB-INF/hapi-fhir-server-config.xml",
"src/main/webapp/WEB-INF/non-fhir-services-config.xml"
);
ourAppCtx.start();
}
@Test
public void testSomething() {
}
@AfterClass
public static void afterClass() {
ourAppCtx.stop();
}
}

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@ -1,42 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"
xmlns:p="http://www.springframework.org/schema/p" xmlns:tx="http://www.springframework.org/schema/tx" xmlns:task="http://www.springframework.org/schema/task" xmlns:util="http://www.springframework.org/schema/util"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.0.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx.xsd
http://www.springframework.org/schema/task http://www.springframework.org/schema/task/spring-task.xsd
http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-2.0.xsd
"
default-autowire="no" default-lazy-init="false">
<context:annotation-config />
<context:mbean-server />
<bean id="myDaoConfig" class="ca.uhn.fhir.jpa.dao.DaoConfig">
</bean>
<bean id="myTxManager" class="org.springframework.orm.jpa.JpaTransactionManager">
<property name="entityManagerFactory" ref="entityManagerFactory" />
</bean>
<tx:annotation-driven transaction-manager="myTxManager" />
<util:list id="myServerInterceptors">
<ref bean="authorizationInterceptor"/>
<ref bean="loggingInterceptor"/>
</util:list>
<bean id="authorizationInterceptor" class="ca.uhn.fhir.jpa.demo.interceptor.RequestAuthorizationInterceptor">
</bean>
<!--
Do some fancy logging to create a nice access log that has details
about each incoming request.
-->
<bean id="loggingInterceptor" class="ca.uhn.fhir.rest.server.interceptor.LoggingInterceptor">
<property name="loggerName" value="fhirtest.access"/>
<property name="messageFormat"
value="Path[${servletPath}] Source[${requestHeader.x-forwarded-for}] Operation[${operationType} ${idOrResourceName}] UA[${requestHeader.user-agent}] Params[${requestParameters}]"/>
</bean>
</beans>

View File

@ -1,57 +0,0 @@
<beans xmlns="http://www.springframework.org/schema/beans" xmlns:mvc="http://www.springframework.org/schema/mvc" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xmlns:tx="http://www.springframework.org/schema/tx" xmlns:context="http://www.springframework.org/schema/context" xmlns:security="http://www.springframework.org/schema/security"
xmlns:oauth="http://www.springframework.org/schema/security/oauth2"
xsi:schemaLocation="http://www.springframework.org/schema/security/oauth2 http://www.springframework.org/schema/security/spring-security-oauth2-2.0.xsd
http://www.springframework.org/schema/mvc http://www.springframework.org/schema/mvc/spring-mvc-3.2.xsd
http://www.springframework.org/schema/security http://www.springframework.org/schema/security/spring-security-3.1.xsd
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans-3.2.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx-3.2.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.2.xsd">
<!--
This file configures the database connection for the HAPI JPA Server.
-->
<!--
The following bean configures the database connection. The 'url' property value
of "jdbc:derby:directory:jpaserver_derby_files;create=true" indicates that the
server should save resources in a directory called "jpaserver_derby_files".
A URL to a remote database could also be placed here, along with login credentials
and other properties supported by BasicDataSource.
-->
<bean id="myPersistenceDataSource" class="org.apache.commons.dbcp2.BasicDataSource" destroy-method="close">
<property name="url" value="jdbc:derby:directory:jpaserver_derby_files;create=true" />
<property name="driverClassName" value="org.apache.derby.jdbc.EmbeddedDriver"></property>
<property name="username" value=""/>
<property name="password" value=""/>
</bean>
<!--
Hibernate can be configured with other dialects if you wish to connect to another
database (e.g. Postgres). Consult the Hibernate documentation to see a list of
available dialects.
-->
<bean id="entityManagerFactory" class="org.springframework.orm.jpa.LocalContainerEntityManagerFactoryBean">
<property name="dataSource" ref="myPersistenceDataSource" />
<!--
<property name="persistenceXmlLocation" value="classpath:META-INF/fhirtest_persistence.xml" />
<property name="persistenceUnitName" value="FHIR_UT" />
-->
<property name="packagesToScan">
<array>
<value type="java.lang.String">ca.uhn.fhir.jpa.entity</value>
<value type="java.lang.String">ca.uhn.fhir.jpa.model.entity</value>
<value type="java.lang.String">ca.uhn.fhir.jpa.demo.entity</value>
</array>
</property>
<property name="jpaVendorAdapter">
<bean class="org.springframework.orm.jpa.vendor.HibernateJpaVendorAdapter">
<property name="showSql" value="false" />
<property name="generateDdl" value="true" />
<property name="databasePlatform" value="org.hibernate.dialect.DerbyTenSevenDialect" />
</bean>
</property>
</bean>
</beans>

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@ -1,29 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<beans xmlns="http://www.springframework.org/schema/beans"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:context="http://www.springframework.org/schema/context"
xmlns:p="http://www.springframework.org/schema/p" xmlns:tx="http://www.springframework.org/schema/tx"
xmlns:task="http://www.springframework.org/schema/task" xmlns:util="http://www.springframework.org/schema/util"
xmlns:mvc="http://www.springframework.org/schema/mvc"
xsi:schemaLocation="
http://www.springframework.org/schema/beans http://www.springframework.org/schema/beans/spring-beans.xsd
http://www.springframework.org/schema/context http://www.springframework.org/schema/context/spring-context-3.0.xsd
http://www.springframework.org/schema/tx http://www.springframework.org/schema/tx/spring-tx.xsd
http://www.springframework.org/schema/task http://www.springframework.org/schema/task/spring-task.xsd
http://www.springframework.org/schema/util http://www.springframework.org/schema/util/spring-util-2.0.xsd
http://www.springframework.org/schema/mvc http://www.springframework.org/schema/mvc/spring-mvc.xsd
"
default-autowire="no" default-lazy-init="false">
<context:annotation-config/>
<context:mbean-server/>
<mvc:annotation-driven>
<mvc:message-converters register-defaults="false">
<bean id="jacksonMessageConverter"
class="org.springframework.http.converter.json.MappingJackson2HttpMessageConverter"/>
</mvc:message-converters>
</mvc:annotation-driven>
<context:component-scan base-package="ca.uhn.fhir.jpa.demo.svc"></context:component-scan>
</beans>

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@ -1,4 +0,0 @@
.classpath
.project
/target/
/bin/

View File

@ -1,121 +0,0 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<!--
HAPI projects use the Sonatype OSS parent project.
You do not need to use this <parent> in your own projects.
-->
<parent>
<groupId>org.sonatype.oss</groupId>
<artifactId>oss-parent</artifactId>
<version>7</version>
</parent>
<groupId>ca.uhn.hapi.example</groupId>
<artifactId>hapi-fhir-example-simple-server</artifactId>
<version>0.8</version>
<packaging>war</packaging>
<name>HAPI FHIR Example - Simple Server</name>
<repositories>
<repository>
<id>oss-snapshots</id>
<snapshots>
<enabled>true</enabled>
</snapshots>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
</repository>
</repositories>
<dependencies>
<!-- This dependency includes the core HAPI-FHIR classes -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>1.6</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu</artifactId>
<version>1.6</version>
</dependency>
<!--
HAPI-FHIR uses Logback for logging support. The logback library is included
automatically by Maven as a part of the hapi-fhir-base dependency, but you
also need to include a logging library. Logback is used here, but log4j
would also be fine.
-->
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.1.2</version>
</dependency>
<!-- Needed for JEE/Servlet support -->
<dependency>
<groupId>javax.servlet</groupId>
<artifactId>javax.servlet-api</artifactId>
<version>3.0.1</version>
<scope>provided</scope>
</dependency>
</dependencies>
<build>
<!--
Tells Maven to name the generated WAR file as
restful-server-example.war
-->
<finalName>restful-server-example</finalName>
<!--
The following is not required for the application to build, but
allows you to test it by issuing "mvn jetty:run" from the command
line.
-->
<pluginManagement>
<plugins>
<plugin>
<groupId>org.eclipse.jetty</groupId>
<artifactId>jetty-maven-plugin</artifactId>
<version>9.1.1.v20140108</version>
</plugin>
</plugins>
</pluginManagement>
<plugins>
<!--
Tell Maven which Java source version you want to use
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
<!--
The deploy plugin is configured as a part of the HAPI
internal build process, you do not need to include
the <plugin> below in your own projects
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<skip>false</skip>
</configuration>
</plugin>
</plugins>
</build>
</project>

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@ -1 +0,0 @@
curl -H "Content-Type: application/xml+fhir" -X POST -d '<Patient xmlns="http://hl7.org/fhir"><name><family value="Fireman"/><given value="John"/></name></Patient>' "http://localhost:8080/example03/Patient"

View File

@ -1,46 +0,0 @@
package ca.uhn.fhir.example.ex1;
import java.util.List;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.annotation.Create;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.OptionalParam;
import ca.uhn.fhir.rest.annotation.Read;
import ca.uhn.fhir.rest.annotation.ResourceParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.param.StringParam;
import ca.uhn.fhir.rest.server.IResourceProvider;
/**
* Note, this is an incomplete example of a resource provider. It does not
* do anything but is used as examples of methods that can be used.
*/
public class Example01_ResourceProviders implements IResourceProvider {
@Override
public Class<? extends IResource> getResourceType() {
return Patient.class;
}
@Read()
public Patient read(@IdParam IdDt theId) {
return null; // populate this
}
@Create
void create(@ResourceParam Patient thePatient) {
// save the resource
}
@Search
List<Patient> search(
@OptionalParam(name="family") StringParam theFamily,
@OptionalParam(name="given") StringParam theGiven
) {
return null; // populate this
}
}

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@ -1,46 +0,0 @@
package ca.uhn.fhir.example.ex2;
import java.util.HashMap;
import java.util.Map;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.Read;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
/**
* This is the most basic resource provider, showing only a single
* read method on a resource provider
*/
public class Example02_PatientResourceProvider implements IResourceProvider {
private Map<Long, Patient> myPatients = new HashMap<Long, Patient>();
/** Constructor */
public Example02_PatientResourceProvider() {
Patient pat1 = new Patient();
pat1.addIdentifier().setSystem("http://acme.com/MRNs").setValue("7000135");
pat1.addName().addFamily("Simpson").addGiven("Homer").addGiven("J");
myPatients.put(1L, pat1);
}
/** All Resource Providers must implement this method */
@Override
public Class<? extends IResource> getResourceType() {
return Patient.class;
}
/** Simple implementation of the "read" method */
@Read()
public Patient read(@IdParam IdDt theId) {
Patient retVal = myPatients.get(theId.getIdPartAsLong());
if (retVal == null) {
throw new ResourceNotFoundException(theId);
}
return retVal;
}
}

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@ -1,27 +0,0 @@
package ca.uhn.fhir.example.ex2;
import javax.servlet.ServletException;
import javax.servlet.annotation.WebServlet;
import ca.uhn.fhir.rest.server.RestfulServer;
@WebServlet("/example02/*")
public class Example02_SimpleRestfulServer extends RestfulServer {
private static final long serialVersionUID = 1L;
@Override
protected void initialize() throws ServletException {
// Set the resource providers used by this server
setResourceProviders(new Example02_PatientResourceProvider());
/* This just means to use Content-Types which are not technically
* FHIR compliant if a browser is detected (so that they display
* nicely for testing) */
setUseBrowserFriendlyContentTypes(true);
}
}

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@ -1,98 +0,0 @@
package ca.uhn.fhir.example.ex3;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.annotation.Create;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.OptionalParam;
import ca.uhn.fhir.rest.annotation.Read;
import ca.uhn.fhir.rest.annotation.RequiredParam;
import ca.uhn.fhir.rest.annotation.ResourceParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.param.StringParam;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
/**
* This is the most basic resource provider, showing only a single
* read method on a resource provider
*/
public class Example03_PatientResourceProvider implements IResourceProvider {
private Map<Long, Patient> myPatients = new HashMap<Long, Patient>();
private Long myNextId = 1L;
/** Constructor */
public Example03_PatientResourceProvider() {
Long id = myNextId++;
Patient pat1 = new Patient();
pat1.setId(new IdDt(id));
pat1.addIdentifier().setSystem("http://acme.com/MRNs").setValue("7000135");
pat1.addName().addFamily("Simpson").addGiven("Homer").addGiven("J");
myPatients.put(id, pat1);
}
/** All Resource Providers must implement this method */
@Override
public Class<? extends IResource> getResourceType() {
return Patient.class;
}
/** Simple implementation of the "read" method */
@Read()
public Patient read(@IdParam IdDt theId) {
Patient retVal = myPatients.get(theId.getIdPartAsLong());
if (retVal == null) {
throw new ResourceNotFoundException(theId);
}
return retVal;
}
/** Create/save a new resource */
@Create
public MethodOutcome create(@ResourceParam Patient thePatient) {
// Give the resource the next sequential ID
long id = myNextId++;
thePatient.setId(new IdDt(id));
// Store the resource in memory
myPatients.put(id, thePatient);
// Inform the server of the ID for the newly stored resource
return new MethodOutcome(thePatient.getId());
}
/** Simple "search" implementation **/
@Search
public List<Patient> search() {
List<Patient> retVal = new ArrayList<Patient>();
retVal.addAll(myPatients.values());
return retVal;
}
/** A search with a parameter */
@Search
public List<Patient> search(@RequiredParam(name="family") StringParam theParam) {
List<Patient> retVal = new ArrayList<Patient>();
// Loop through the patients looking for matches
for (Patient next : myPatients.values()) {
String familyName = next.getNameFirstRep().getFamilyAsSingleString().toLowerCase();
if (familyName.contains(theParam.getValue().toLowerCase()) == false) {
continue;
}
retVal.add(next);
}
return retVal;
}
}

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@ -1,27 +0,0 @@
package ca.uhn.fhir.example.ex3;
import javax.servlet.ServletException;
import javax.servlet.annotation.WebServlet;
import ca.uhn.fhir.rest.server.RestfulServer;
@WebServlet("/example03/*")
public class Example03_SimpleRestfulServer extends RestfulServer {
private static final long serialVersionUID = 1L;
@Override
protected void initialize() throws ServletException {
// Set the resource providers used by this server
setResourceProviders(new Example03_PatientResourceProvider());
/* This just means to use Content-Types which are not technically
* FHIR compliant if a browser is detected (so that they display
* nicely for testing) */
setUseBrowserFriendlyContentTypes(true);
}
}

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@ -1,75 +0,0 @@
package ca.uhn.fhir.example.ex4;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.annotation.Create;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.Read;
import ca.uhn.fhir.rest.annotation.ResourceParam;
import ca.uhn.fhir.rest.annotation.Search;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.server.IResourceProvider;
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
/**
* This is the most basic resource provider, showing only a single
* read method on a resource provider
*/
public class Example04_PatientResourceProvider implements IResourceProvider {
private Map<Long, Patient> myPatients = new HashMap<Long, Patient>();
private Long myNextId = 1L;
/** Constructor */
public Example04_PatientResourceProvider() {
Patient pat1 = new Patient();
pat1.addIdentifier().setSystem("http://acme.com/MRNs").setValue("7000135");
pat1.addName().addFamily("Simpson").addGiven("Homer").addGiven("J");
myPatients.put(myNextId++, pat1);
}
/** All Resource Providers must implement this method */
@Override
public Class<? extends IResource> getResourceType() {
return Patient.class;
}
/** Simple implementation of the "read" method */
@Read()
public Patient read(@IdParam IdDt theId) {
Patient retVal = myPatients.get(theId.getIdPartAsLong());
if (retVal == null) {
throw new ResourceNotFoundException(theId);
}
return retVal;
}
/** Create/save a new resource */
@Create
public MethodOutcome create(@ResourceParam Patient thePatient) {
// Give the resource the next sequential ID
long id = myNextId++;
thePatient.setId(new IdDt(id));
// Store the resource in memory
myPatients.put(id, thePatient);
// Inform the server of the ID for the newly stored resource
return new MethodOutcome(thePatient.getId());
}
/** Simple "search" implementation **/
@Search
public List<Patient> search() {
List<Patient> retVal = new ArrayList<Patient>();
retVal.addAll(myPatients.values());
return retVal;
}
}

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@ -1,19 +0,0 @@
package ca.uhn.fhir.example.ex4;
import javax.servlet.ServletException;
import javax.servlet.annotation.WebServlet;
import ca.uhn.fhir.rest.server.RestfulServer;
@WebServlet("/example04/*")
public class Example04_SimpleRestfulServer extends RestfulServer {
private static final long serialVersionUID = 1L;
@Override
protected void initialize() throws ServletException {
setResourceProviders(new Example04_PatientResourceProvider());
}
}

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@ -1,6 +0,0 @@
<?xml version="1.0" encoding="UTF-8"?>
<web-app version="3.0">
</web-app>

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@ -1,3 +0,0 @@
.classpath
.project
/target/

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@ -1,126 +0,0 @@
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
<modelVersion>4.0.0</modelVersion>
<!--
HAPI projects use the Sonatype OSS parent project.
You do not need to use this in your own projects.
-->
<parent>
<groupId>org.sonatype.oss</groupId>
<artifactId>oss-parent</artifactId>
<version>7</version>
</parent>
<groupId>ca.uhn.hapi.example</groupId>
<artifactId>hapi-fhir-example-skeleton-project</artifactId>
<version>0.7</version>
<packaging>jar</packaging>
<name>HAPI FHIR Example - Skeleton Project</name>
<repositories>
<repository>
<id>oss-snapshots</id>
<snapshots>
<enabled>true</enabled>
</snapshots>
<url>https://oss.sonatype.org/content/repositories/snapshots/</url>
</repository>
</repositories>
<dependencies>
<!-- This dependency includes the core HAPI-FHIR classes -->
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-base</artifactId>
<version>0.7</version>
</dependency>
<!--
Beginning in HAPI 0.8, at least one "structures" JAR must also be included.
For now it is commented out.
-->
<!--
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-structures-dstu</artifactId>
<version>0.8-SNAPSHOT</version>
</dependency>
-->
<!--
HAPI-FHIR uses Logback for logging support. The logback library is included
automatically by Maven as a part of the hapi-fhir-base dependency, but you
also need to include a logging library. Logback is used here, but log4j
would also be fine.
-->
<dependency>
<groupId>ch.qos.logback</groupId>
<artifactId>logback-classic</artifactId>
<version>1.1.2</version>
</dependency>
<!--
The following two dependencies are required only if you are using
Schematron resource validation. Otherwise, they may be omitted.
-->
<dependency>
<groupId>com.helger</groupId>
<artifactId>ph-schematron</artifactId>
<exclusions>
<exclusion>
<artifactId>Saxon-HE</artifactId>
<groupId>net.sf.saxon</groupId>
</exclusion>
</exclusions>
</dependency>
<dependency>
<groupId>com.helger</groupId>
<artifactId>ph-commons</artifactId>
<version>4.3.3</version>
</dependency>
<!--
The following dependency is only required for narrative generator
support. If you are not using this, it may be removed.
-->
<dependency>
<groupId>org.thymeleaf</groupId>
<artifactId>thymeleaf</artifactId>
<version>2.1.3.RELEASE</version>
</dependency>
</dependencies>
<build>
<plugins>
<!--
Tell Maven which Java source version you want to use
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-compiler-plugin</artifactId>
<version>3.1</version>
<configuration>
<source>1.6</source>
<target>1.6</target>
</configuration>
</plugin>
<!--
This plugin is just a part of the HAPI internal build process, you do not
need to incude it in your own projects
-->
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-deploy-plugin</artifactId>
<configuration>
<skip>false</skip>
</configuration>
</plugin>
</plugins>
</build>
</project>

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@ -1,27 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.model.dstu.composite.HumanNameDt;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.resource.Patient;
public class Example01_CreateAPatient {
public static void main(String[] theArgs) {
// Create a resource instance
Patient pat = new Patient();
// Add a "name" element
HumanNameDt name = pat.addName();
name.addFamily("Simpson").addGiven("Homer").addGiven("J");
// Add an "identifier" element
IdentifierDt identifier = pat.addIdentifier();
identifier.setSystem("http://acme.org/MRNs").setValue("7000135");
// Model is designed to be chained
pat.addIdentifier().setLabel("Library Card 12345").setValue("12345");
}
}

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@ -1,27 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.model.dstu.composite.ContactDt;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.valueset.AdministrativeGenderCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.ContactSystemEnum;
import ca.uhn.fhir.model.dstu.valueset.ContactUseEnum;
public class Example02_CreateAPatient {
public static void main(String[] theArgs) {
Patient pat = new Patient();
pat.addName().addFamily("Simpson").addGiven("Homer").addGiven("J");
pat.addIdentifier().setSystem("http://acme.org/MRNs").setValue("7000135");
pat.addIdentifier().setLabel("Library Card 12345").setValue("12345");
// Enumerated types are provided for many coded elements
ContactDt contact = pat.addTelecom();
contact.setUse(ContactUseEnum.HOME);
contact.setSystem(ContactSystemEnum.PHONE);
contact.setValue("1 (416) 340-4800");
pat.setGender(AdministrativeGenderCodesEnum.M);
}
}

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@ -1,32 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.valueset.AdministrativeGenderCodesEnum;
import ca.uhn.fhir.model.dstu.valueset.ContactSystemEnum;
import ca.uhn.fhir.model.dstu.valueset.ContactUseEnum;
import ca.uhn.fhir.parser.IParser;
public class Example03_EncodeResource {
public static void main(String[] theArgs) {
// Create a Patient
Patient pat = new Patient();
pat.addName().addFamily("Simpson").addGiven("Homer").addGiven("J");
pat.addIdentifier().setSystem("http://acme.org/MRNs").setValue("7000135");
pat.addIdentifier().setLabel("Library Card 12345").setValue("12345");
pat.addTelecom().setUse(ContactUseEnum.HOME).setSystem(ContactSystemEnum.PHONE).setValue("1 (416) 340-4800");
pat.setGender(AdministrativeGenderCodesEnum.M);
// Create a context
FhirContext ctx = new FhirContext();
// Create a XML parser
IParser parser = ctx.newXmlParser();
parser.setPrettyPrint(true);
String encode = parser.encodeResourceToString(pat);
System.out.println(encode);
}
}

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@ -1,29 +0,0 @@
package ca.uhn.fhir.example;
import java.util.List;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.parser.IParser;
public class Example04_ParseResource {
public static void main(String[] theArgs) {
String resourceBody = "{\"resourceType\":\"Patient\",\"identifier\":[{\"system\":\"http://acme.org/MRNs\",\"value\":\"7000135\"}],\"name\":[{\"family\":[\"Simpson\"],\"given\":[\"Homer\",\"J\"]}]}";
// Create a context
FhirContext ctx = new FhirContext();
// Create a JSON parser
IParser parser = ctx.newJsonParser();
Patient pat = parser.parseResource(Patient.class, resourceBody);
List<IdentifierDt> identifiers = pat.getIdentifier();
String idSystemString = identifiers.get(0).getSystem().getValueAsString();
String idValueString = identifiers.get(0).getValue().getValueAsString();
System.out.println(idSystemString + " " + idValueString);
}
}

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@ -1,31 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.valueset.AdministrativeGenderCodesEnum;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.client.IGenericClient;
public class Example05_ClientCreate {
public static void main(String[] theArgs) {
Patient pat = new Patient();
pat.addName().addFamily("Simpson").addGiven("Homer").addGiven("J");
pat.addIdentifier().setSystem("http://acme.org/MRNs").setValue("7000135");
pat.setGender(AdministrativeGenderCodesEnum.M);
// Create a context
FhirContext ctx = new FhirContext();
// Create a client
String serverBaseUrl = "http://fhirtest.uhn.ca/base";
IGenericClient client = ctx.newRestfulGenericClient(serverBaseUrl);
// Use the client to store a new resource instance
MethodOutcome outcome = client.create().resource(pat).execute();
// Print the ID of the newly created resource
System.out.println(outcome.getId());
}
}

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@ -1,39 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.rest.client.IGenericClient;
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
//@formatter:off
public class Example06_ClientReadAndUpdate {
public static void main(String[] theArgs) {
// Create a client
FhirContext ctx = new FhirContext();
String serverBaseUrl = "http://fhirtest.uhn.ca/base";
IGenericClient client = ctx.newRestfulGenericClient(serverBaseUrl);
// Log requests and responses
client.registerInterceptor(new LoggingInterceptor(true));
// Build a search and execute it
Bundle response = client.search()
.forResource(Patient.class)
.where(Patient.NAME.matches().value("Test"))
.and(Patient.BIRTHDATE.before().day("2014-01-01"))
.limitTo(100)
.execute();
// How many resources did we find?
System.out.println("Responses: " + response.size());
// Print the ID of the first one
IdDt firstResponseId = response.getEntries().get(0).getResource().getId();
System.out.println(firstResponseId);
}
}
//@formatter:on

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@ -1,31 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.valueset.AdministrativeGenderCodesEnum;
import ca.uhn.fhir.rest.api.MethodOutcome;
import ca.uhn.fhir.rest.client.IGenericClient;
public class Example07_ClientSearch {
public static void main(String[] theArgs) {
// Create a client
String serverBaseUrl = "http://fhirtest.uhn.ca/base";
FhirContext ctx = new FhirContext();
IGenericClient client = ctx.newRestfulGenericClient(serverBaseUrl);
// Use the client to read back the new instance using the
// ID we retrieved from the read
Patient patient = client.read(Patient.class, "4529");
// Print the ID of the newly created resource
System.out.println("Found ID: " + patient.getId());
// Change the gender and send an update to the server
patient.setGender(AdministrativeGenderCodesEnum.F);
MethodOutcome outcome = client.update().resource(patient).execute();
System.out.println("Now have ID: " + outcome.getId());
}
}

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@ -1,34 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Encounter;
import ca.uhn.fhir.model.dstu.resource.OperationOutcome;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.validation.FhirValidator;
import ca.uhn.fhir.validation.ValidationResult;
public class Example08_ValidateResource {
public static void main(String[] args) {
// Create an encounter with an invalid status and no class
Encounter enc = new Encounter();
enc.getStatus().setValueAsString("invalid_status");
// Create a new validator
FhirContext ctx = new FhirContext();
FhirValidator validator = ctx.newValidator();
// Did we succeed?
ValidationResult result = validator.validateWithResult(enc);
System.out.println("Success: " + result.isSuccessful());
// What was the result
OperationOutcome outcome = result.getOperationOutcome();
IParser parser = ctx.newXmlParser().setPrettyPrint(true);
System.out.println(parser.encodeResourceToString(outcome));
}
}

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@ -1,30 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Encounter;
import ca.uhn.fhir.model.dstu.resource.OperationOutcome;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
import ca.uhn.fhir.parser.IParser;
import ca.uhn.fhir.validation.FhirValidator;
import ca.uhn.fhir.validation.ValidationResult;
public class Example09_NarrativeGenerator {
public static void main(String[] args) {
// Create an encounter with an invalid status and no class
Patient pat = new Patient();
pat.addName().addFamily("Simpson").addGiven("Homer").addGiven("Jay");
pat.addAddress().addLine("342 Evergreen Terrace").addLine("Springfield");
pat.addIdentifier().setLabel("MRN: 12345");
// Create a new context and enable the narrative generator
FhirContext ctx = new FhirContext();
ctx.setNarrativeGenerator(new DefaultThymeleafNarrativeGenerator());
String res = ctx.newJsonParser().setPrettyPrint(true).encodeResourceToString(pat);
System.out.println(res);
}
}

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@ -1,24 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.parser.IParser;
public class Example10_Extensions {
public static void main(String[] args) {
Patient pat = new Patient();
pat.addName().addFamily("Simpson").addGiven("Homer");
String url = "http://acme.org#eyeColour";
boolean isModifier = false;
pat.addUndeclaredExtension(isModifier, url).setValue(new CodeDt("blue"));;
IParser p = new FhirContext().newXmlParser().setPrettyPrint(true);
String encoded = p.encodeResourceToString(pat);
System.out.println(encoded);
}
}

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@ -1,27 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.model.api.annotation.Child;
import ca.uhn.fhir.model.api.annotation.Extension;
import ca.uhn.fhir.model.api.annotation.ResourceDef;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.primitive.CodeDt;
@ResourceDef(name="Patient")
public class Example11_ExtendedPatient extends Patient {
@Child(name = "eyeColour")
@Extension(url="http://acme.org/#extpt", definedLocally = false, isModifier = false)
private CodeDt myEyeColour;
public CodeDt getEyeColour() {
if (myEyeColour == null) {
myEyeColour = new CodeDt();
}
return myEyeColour;
}
public void setEyeColour(CodeDt theEyeColour) {
myEyeColour = theEyeColour;
}
}

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@ -1,22 +0,0 @@
package ca.uhn.fhir.example;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.parser.IParser;
public class Example11_UseExtensions {
public static void main(String[] args) {
Example11_ExtendedPatient pat = new Example11_ExtendedPatient();
pat.addName().addFamily("Simpson").addGiven("Homer");
pat.setEyeColour(new CodeDt("blue"));
IParser p = new FhirContext().newXmlParser().setPrettyPrint(true);
String encoded = p.encodeResourceToString(pat);
System.out.println(encoded);
}
}

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@ -1,16 +0,0 @@
<configuration scan="true" scanPeriod="30 seconds">
<appender name="STDOUT" class="ch.qos.logback.core.ConsoleAppender">
<filter class="ch.qos.logback.classic.filter.ThresholdFilter">
<level>INFO</level>
</filter>
<encoder>
<pattern>%d{HH:mm:ss.SSS} %-5level %logger{36} %msg%n</pattern>
</encoder>
</appender>
<root>
<appender-ref ref="STDOUT" />
</root>
</configuration>

11
pom.xml
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@ -555,9 +555,9 @@
<aries_spifly_version>1.2</aries_spifly_version>
<caffeine_version>2.7.0</caffeine_version>
<commons_codec_version>1.12</commons_codec_version>
<commons_text_version>1.6</commons_text_version>
<commons_text_version>1.7</commons_text_version>
<commons_io_version>2.6</commons_io_version>
<commons_lang3_version>3.8.1</commons_lang3_version>
<commons_lang3_version>3.9</commons_lang3_version>
<derby_version>10.14.2.0</derby_version>
<!--<derby_version>10.15.1.3</derby_version>-->
<error_prone_annotations_version>2.3.3</error_prone_annotations_version>
@ -581,6 +581,7 @@
<httpcore_version>4.4.11</httpcore_version>
<httpclient_version>4.5.8</httpclient_version>
<jackson_version>2.9.9</jackson_version>
<jackson_databind_version>2.9.9.1</jackson_databind_version>
<maven_assembly_plugin_version>3.1.0</maven_assembly_plugin_version>
<maven_license_plugin_version>1.8</maven_license_plugin_version>
<resteasy_version>4.0.0.Beta3</resteasy_version>
@ -639,7 +640,7 @@
<dependency>
<groupId>com.fasterxml.jackson.core</groupId>
<artifactId>jackson-databind</artifactId>
<version>${jackson_version}</version>
<version>${jackson_databind_version}</version>
</dependency>
<dependency>
<groupId>com.fasterxml.jackson.datatype</groupId>
@ -739,7 +740,7 @@
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-collections4</artifactId>
<version>4.1</version>
<version>4.3</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>
@ -908,7 +909,7 @@
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-dbcp2</artifactId>
<version>2.5.0</version>
<version>2.6.0</version>
</dependency>
<dependency>
<groupId>org.apache.commons</groupId>

View File

@ -20,6 +20,11 @@
<!-- <li>Derby (CLI and JPA Examples): 10.14.2.0 -&gt; 10.15.1.3</li>-->
<li>JANSI (CLI): 1.17.1 -&gt; 1.18</li>
<li>json-patch (JPA): 1.10 -&gt; 1.15 (see changelog entry about this change)</li>
<li>Jackson-Databind (JPA): 2.9.9 -&gt; 2.9.9.1 (due to a Jackson vulnerability CVE-2019-12384)</li>
<li>commons-collections4 (Server/JPA): 4.1 -&gt; 4.3</li>
<li>commons-dbcp2 (JPA): 2.5.0 -&gt; 2.6.0</li>
<li>commons-lang3 (Core): 3.8.1 -&gt; 3.9</li>
<li>commons-text (Core): 1.6 -&gt; 1.7</li>
</ul>
]]>
</action>