minor refactor to extract static string variables into a singel constants class in bulk export (#3117)
Co-authored-by: Long Ma <longma@Longs-MBP.hitronhub.home>
This commit is contained in:
parent
8a1e8f4b2f
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2067ba83ee
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@ -56,6 +56,23 @@ public final class BatchConstants {
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public static final String MDM_CLEAR_JOB_NAME = "mdmClearJob";
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public static final String MDM_CLEAR_JOB_NAME = "mdmClearJob";
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public static final String BULK_EXPORT_READ_CHUNK_PARAMETER = "readChunkSize";
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public static final String BULK_EXPORT_READ_CHUNK_PARAMETER = "readChunkSize";
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public static final String BULK_EXPORT_GROUP_ID_PARAMETER = "groupId";
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public static final String BULK_EXPORT_GROUP_ID_PARAMETER = "groupId";
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/**
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* Job Parameters
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*/
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public static final String READ_CHUNK_PARAMETER = "readChunkSize";
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public static final String EXPAND_MDM_PARAMETER = "expandMdm";
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public static final String GROUP_ID_PARAMETER = "groupId";
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public static final String JOB_RESOURCE_TYPES_PARAMETER = "resourceTypes";
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public static final String JOB_DESCRIPTION = "jobDescription";
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public static final String JOB_SINCE_PARAMETER = "since";
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public static final String JOB_TYPE_FILTERS = "filters";
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public static final String JOB_COLLECTION_ENTITY_ID = "bulkExportCollectionEntityId";
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/**
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* Job Execution Context
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*/
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public static final String JOB_EXECUTION_RESOURCE_TYPE = "resourceType";
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/**
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/**
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* This Set contains the step names across all job types that are appropriate for
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* This Set contains the step names across all job types that are appropriate for
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* someone to look at the write count for that given step in order to determine the
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* someone to look at the write count for that given step in order to determine the
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@ -23,8 +23,8 @@ package ca.uhn.fhir.jpa.batch.processor;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.RuntimeSearchParam;
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import ca.uhn.fhir.context.RuntimeSearchParam;
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import ca.uhn.fhir.fhirpath.IFhirPath;
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import ca.uhn.fhir.fhirpath.IFhirPath;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.batch.log.Logs;
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import ca.uhn.fhir.jpa.batch.log.Logs;
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import ca.uhn.fhir.jpa.bulk.export.job.BulkExportJobConfig;
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import ca.uhn.fhir.jpa.dao.mdm.MdmExpansionCacheSvc;
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import ca.uhn.fhir.jpa.dao.mdm.MdmExpansionCacheSvc;
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import ca.uhn.fhir.util.ExtensionUtil;
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import ca.uhn.fhir.util.ExtensionUtil;
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import ca.uhn.fhir.util.HapiExtensions;
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import ca.uhn.fhir.util.HapiExtensions;
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@ -57,7 +57,7 @@ public class GoldenResourceAnnotatingProcessor implements ItemProcessor<List<IBa
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@Autowired
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@Autowired
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private MdmExpansionCacheSvc myMdmExpansionCacheSvc;
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private MdmExpansionCacheSvc myMdmExpansionCacheSvc;
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@Value("#{jobParameters['" + BulkExportJobConfig.EXPAND_MDM_PARAMETER+ "'] ?: false}")
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@Value("#{jobParameters['" + BatchConstants.EXPAND_MDM_PARAMETER + "'] ?: false}")
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private boolean myMdmEnabled;
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private boolean myMdmEnabled;
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@ -52,13 +52,7 @@ import java.util.List;
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*/
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*/
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@Configuration
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@Configuration
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public class BulkExportJobConfig {
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public class BulkExportJobConfig {
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public static final String READ_CHUNK_PARAMETER = "readChunkSize";
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public static final String EXPAND_MDM_PARAMETER = "expandMdm";
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public static final String GROUP_ID_PARAMETER = "groupId";
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public static final String RESOURCE_TYPES_PARAMETER = "resourceTypes";
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public static final int CHUNK_SIZE = 100;
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public static final int CHUNK_SIZE = 100;
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public static final String JOB_DESCRIPTION = "jobDescription";
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@Autowired
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@Autowired
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private FhirContext myFhirContext;
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private FhirContext myFhirContext;
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@ -54,7 +54,7 @@ public class BulkExportJobParameterValidator implements JobParametersValidator {
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TransactionTemplate txTemplate = new TransactionTemplate(myTransactionManager);
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TransactionTemplate txTemplate = new TransactionTemplate(myTransactionManager);
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String errorMessage = txTemplate.execute(tx -> {
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String errorMessage = txTemplate.execute(tx -> {
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StringBuilder errorBuilder = new StringBuilder();
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StringBuilder errorBuilder = new StringBuilder();
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Long readChunkSize = theJobParameters.getLong(BulkExportJobConfig.READ_CHUNK_PARAMETER);
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Long readChunkSize = theJobParameters.getLong(BatchConstants.READ_CHUNK_PARAMETER);
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if (readChunkSize == null || readChunkSize < 1) {
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if (readChunkSize == null || readChunkSize < 1) {
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errorBuilder.append("There must be a valid number for readChunkSize, which is at least 1. ");
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errorBuilder.append("There must be a valid number for readChunkSize, which is at least 1. ");
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}
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}
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@ -68,16 +68,14 @@ public class BulkExportJobParameterValidator implements JobParametersValidator {
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boolean hasExistingJob = oJob.isPresent();
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boolean hasExistingJob = oJob.isPresent();
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//Check for to-be-created parameters.
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//Check for to-be-created parameters.
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if (!hasExistingJob) {
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if (!hasExistingJob) {
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String resourceTypes = theJobParameters.getString(BulkExportJobConfig.RESOURCE_TYPES_PARAMETER);
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String resourceTypes = theJobParameters.getString(BatchConstants.JOB_RESOURCE_TYPES_PARAMETER);
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if (StringUtils.isBlank(resourceTypes)) {
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if (StringUtils.isBlank(resourceTypes)) {
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errorBuilder.append("You must include [").append(BulkExportJobConfig.RESOURCE_TYPES_PARAMETER).append("] as a Job Parameter");
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errorBuilder.append("You must include [").append(BatchConstants.JOB_RESOURCE_TYPES_PARAMETER).append("] as a Job Parameter");
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} else {
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} else {
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String[] resourceArray = resourceTypes.split(",");
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String[] resourceArray = resourceTypes.split(",");
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Arrays.stream(resourceArray).filter(resourceType -> resourceType.equalsIgnoreCase("Binary"))
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Arrays.stream(resourceArray).filter(resourceType -> resourceType.equalsIgnoreCase("Binary"))
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.findFirst()
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.findFirst()
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.ifPresent(resourceType -> {
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.ifPresent(resourceType -> errorBuilder.append("Bulk export of Binary resources is forbidden"));
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errorBuilder.append("Bulk export of Binary resources is forbidden");
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});
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}
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}
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String outputFormat = theJobParameters.getString("outputFormat");
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String outputFormat = theJobParameters.getString("outputFormat");
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@ -20,14 +20,16 @@ package ca.uhn.fhir.jpa.bulk.export.job;
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* #L%
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* #L%
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*/
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*/
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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public class GroupBulkExportJobParametersBuilder extends BulkExportJobParametersBuilder {
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public class GroupBulkExportJobParametersBuilder extends BulkExportJobParametersBuilder {
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public GroupBulkExportJobParametersBuilder setGroupId(String theGroupId) {
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public GroupBulkExportJobParametersBuilder setGroupId(String theGroupId) {
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this.addString(BulkExportJobConfig.GROUP_ID_PARAMETER, theGroupId);
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this.addString(BatchConstants.GROUP_ID_PARAMETER, theGroupId);
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return this;
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return this;
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}
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}
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public GroupBulkExportJobParametersBuilder setMdm(boolean theMdm) {
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public GroupBulkExportJobParametersBuilder setMdm(boolean theMdm) {
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this.addString(BulkExportJobConfig.EXPAND_MDM_PARAMETER, String.valueOf(theMdm));
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this.addString(BatchConstants.EXPAND_MDM_PARAMETER, String.valueOf(theMdm));
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return this;
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return this;
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}
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}
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}
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}
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@ -22,6 +22,7 @@ package ca.uhn.fhir.jpa.bulk.export.job;
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import ca.uhn.fhir.context.RuntimeSearchParam;
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import ca.uhn.fhir.context.RuntimeSearchParam;
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import ca.uhn.fhir.interceptor.model.RequestPartitionId;
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import ca.uhn.fhir.interceptor.model.RequestPartitionId;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.batch.log.Logs;
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import ca.uhn.fhir.jpa.batch.log.Logs;
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import ca.uhn.fhir.jpa.dao.IResultIterator;
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import ca.uhn.fhir.jpa.dao.IResultIterator;
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import ca.uhn.fhir.jpa.dao.ISearchBuilder;
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import ca.uhn.fhir.jpa.dao.ISearchBuilder;
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@ -68,9 +69,9 @@ public class GroupBulkItemReader extends BaseJpaBulkItemReader implements ItemRe
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private static final Logger ourLog = Logs.getBatchTroubleshootingLog();
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private static final Logger ourLog = Logs.getBatchTroubleshootingLog();
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public static final int QUERY_CHUNK_SIZE = 100;
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public static final int QUERY_CHUNK_SIZE = 100;
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@Value("#{jobParameters['" + BulkExportJobConfig.GROUP_ID_PARAMETER + "']}")
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@Value("#{jobParameters['" + BatchConstants.GROUP_ID_PARAMETER + "']}")
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private String myGroupId;
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private String myGroupId;
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@Value("#{jobParameters['" + BulkExportJobConfig.EXPAND_MDM_PARAMETER+ "'] ?: false}")
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@Value("#{jobParameters['" + BatchConstants.EXPAND_MDM_PARAMETER+ "'] ?: false}")
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private boolean myMdmEnabled;
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private boolean myMdmEnabled;
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@Autowired
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@Autowired
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@ -37,7 +37,7 @@ public class ResourceTypePartitioner implements Partitioner {
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private static final Logger ourLog = getLogger(ResourceTypePartitioner.class);
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private static final Logger ourLog = getLogger(ResourceTypePartitioner.class);
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@Value("#{jobExecutionContext['jobUUID']}")
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@Value("#{jobExecutionContext['" + BatchConstants.JOB_UUID_PARAMETER+ "']}")
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private String myJobUUID;
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private String myJobUUID;
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@Autowired
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@Autowired
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@ -57,12 +57,12 @@ public class ResourceTypePartitioner implements Partitioner {
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ExecutionContext context = new ExecutionContext();
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ExecutionContext context = new ExecutionContext();
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//The worker step needs to know what resource type it is looking for.
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//The worker step needs to know what resource type it is looking for.
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context.putString("resourceType", resourceType);
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context.putString(BatchConstants.JOB_EXECUTION_RESOURCE_TYPE, resourceType);
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// The worker step needs to know which parent job it is processing for, and which collection entity it will be
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// The worker step needs to know which parent job it is processing for, and which collection entity it will be
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// attaching its results to.
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// attaching its results to.
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context.putString(BatchConstants.JOB_UUID_PARAMETER, myJobUUID);
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context.putString(BatchConstants.JOB_UUID_PARAMETER, myJobUUID);
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context.putLong("bulkExportCollectionEntityId", collectionEntityId);
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context.putLong(BatchConstants.JOB_COLLECTION_ENTITY_ID, collectionEntityId);
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// Name the partition based on the resource type
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// Name the partition based on the resource type
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partitionContextMap.put(resourceType, context);
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partitionContextMap.put(resourceType, context);
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@ -33,7 +33,6 @@ import ca.uhn.fhir.jpa.api.model.ExpungeOptions;
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import ca.uhn.fhir.jpa.batch.api.IBatchJobSubmitter;
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import ca.uhn.fhir.jpa.batch.api.IBatchJobSubmitter;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportSvc;
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import ca.uhn.fhir.jpa.bulk.export.api.IBulkDataExportSvc;
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import ca.uhn.fhir.jpa.bulk.export.job.BulkExportJobConfig;
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import ca.uhn.fhir.jpa.bulk.export.model.BulkExportJobStatusEnum;
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import ca.uhn.fhir.jpa.bulk.export.model.BulkExportJobStatusEnum;
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import ca.uhn.fhir.jpa.dao.data.IBulkExportCollectionDao;
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import ca.uhn.fhir.jpa.dao.data.IBulkExportCollectionDao;
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import ca.uhn.fhir.jpa.dao.data.IBulkExportCollectionFileDao;
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import ca.uhn.fhir.jpa.dao.data.IBulkExportCollectionFileDao;
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@ -244,7 +243,7 @@ public class BulkDataExportSvcImpl implements IBulkDataExportSvc {
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String theJobUuid = theBulkExportJobEntity.getJobId();
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String theJobUuid = theBulkExportJobEntity.getJobId();
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JobParametersBuilder parameters = new JobParametersBuilder()
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JobParametersBuilder parameters = new JobParametersBuilder()
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.addString(BatchConstants.JOB_UUID_PARAMETER, theJobUuid)
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.addString(BatchConstants.JOB_UUID_PARAMETER, theJobUuid)
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.addLong(BulkExportJobConfig.READ_CHUNK_PARAMETER, READ_CHUNK_SIZE);
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.addLong(BatchConstants.READ_CHUNK_PARAMETER, READ_CHUNK_SIZE);
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ourLog.info("Submitting bulk export job {} to job scheduler", theJobUuid);
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ourLog.info("Submitting bulk export job {} to job scheduler", theJobUuid);
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@ -273,8 +272,8 @@ public class BulkDataExportSvcImpl implements IBulkDataExportSvc {
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private void enhanceBulkParametersWithGroupParameters(BulkExportJobEntity theBulkExportJobEntity, JobParametersBuilder theParameters) {
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private void enhanceBulkParametersWithGroupParameters(BulkExportJobEntity theBulkExportJobEntity, JobParametersBuilder theParameters) {
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String theGroupId = getQueryParameterIfPresent(theBulkExportJobEntity.getRequest(), JpaConstants.PARAM_EXPORT_GROUP_ID);
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String theGroupId = getQueryParameterIfPresent(theBulkExportJobEntity.getRequest(), JpaConstants.PARAM_EXPORT_GROUP_ID);
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String expandMdm = getQueryParameterIfPresent(theBulkExportJobEntity.getRequest(), JpaConstants.PARAM_EXPORT_MDM);
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String expandMdm = getQueryParameterIfPresent(theBulkExportJobEntity.getRequest(), JpaConstants.PARAM_EXPORT_MDM);
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theParameters.addString(BulkExportJobConfig.GROUP_ID_PARAMETER, theGroupId);
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theParameters.addString(BatchConstants.GROUP_ID_PARAMETER, theGroupId);
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theParameters.addString(BulkExportJobConfig.EXPAND_MDM_PARAMETER, expandMdm);
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theParameters.addString(BatchConstants.EXPAND_MDM_PARAMETER, expandMdm);
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}
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}
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@ -24,7 +24,6 @@ import ca.uhn.fhir.jpa.api.config.DaoConfig;
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import ca.uhn.fhir.jpa.batch.api.IBatchJobSubmitter;
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import ca.uhn.fhir.jpa.batch.api.IBatchJobSubmitter;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.batch.log.Logs;
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import ca.uhn.fhir.jpa.batch.log.Logs;
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import ca.uhn.fhir.jpa.bulk.export.job.BulkExportJobConfig;
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import ca.uhn.fhir.jpa.bulk.imprt.api.IBulkDataImportSvc;
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import ca.uhn.fhir.jpa.bulk.imprt.api.IBulkDataImportSvc;
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import ca.uhn.fhir.jpa.bulk.imprt.job.BulkImportJobConfig;
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import ca.uhn.fhir.jpa.bulk.imprt.job.BulkImportJobConfig;
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import ca.uhn.fhir.jpa.bulk.imprt.model.BulkImportJobFileJson;
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import ca.uhn.fhir.jpa.bulk.imprt.model.BulkImportJobFileJson;
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@ -275,7 +274,7 @@ public class BulkDataImportSvcImpl implements IBulkDataImportSvc {
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.addLong(BulkImportJobConfig.JOB_PARAM_COMMIT_INTERVAL, (long) batchSize);
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.addLong(BulkImportJobConfig.JOB_PARAM_COMMIT_INTERVAL, (long) batchSize);
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if (isNotBlank(theBulkExportJobEntity.getJobDescription())) {
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if (isNotBlank(theBulkExportJobEntity.getJobDescription())) {
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parameters.addString(BulkExportJobConfig.JOB_DESCRIPTION, theBulkExportJobEntity.getJobDescription());
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parameters.addString(BatchConstants.JOB_DESCRIPTION, theBulkExportJobEntity.getJobDescription());
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}
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}
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ourLog.info("Submitting bulk import job {} to job scheduler", jobId);
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ourLog.info("Submitting bulk import job {} to job scheduler", jobId);
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@ -6,7 +6,6 @@ import ca.uhn.fhir.interceptor.api.IAnonymousInterceptor;
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import ca.uhn.fhir.interceptor.api.Interceptor;
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import ca.uhn.fhir.interceptor.api.Interceptor;
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import ca.uhn.fhir.interceptor.api.Pointcut;
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import ca.uhn.fhir.interceptor.api.Pointcut;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.bulk.export.job.BulkExportJobConfig;
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import ca.uhn.fhir.jpa.bulk.imprt.api.IBulkDataImportSvc;
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import ca.uhn.fhir.jpa.bulk.imprt.api.IBulkDataImportSvc;
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import ca.uhn.fhir.jpa.bulk.imprt.model.BulkImportJobFileJson;
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import ca.uhn.fhir.jpa.bulk.imprt.model.BulkImportJobFileJson;
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import ca.uhn.fhir.jpa.bulk.imprt.model.BulkImportJobJson;
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import ca.uhn.fhir.jpa.bulk.imprt.model.BulkImportJobJson;
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@ -46,7 +45,6 @@ import org.springframework.beans.factory.annotation.Autowired;
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import javax.annotation.Nonnull;
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import javax.annotation.Nonnull;
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import java.util.ArrayList;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.List;
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import java.util.concurrent.TimeUnit;
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import java.util.stream.Collectors;
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import java.util.stream.Collectors;
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import static ca.uhn.fhir.jpa.batch.config.BatchConstants.BULK_IMPORT_JOB_NAME;
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import static ca.uhn.fhir.jpa.batch.config.BatchConstants.BULK_IMPORT_JOB_NAME;
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@ -144,7 +142,7 @@ public class BulkDataImportR4Test extends BaseJpaR4Test implements ITestDataBuil
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assertTrue(activateJobOutcome);
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assertTrue(activateJobOutcome);
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List<JobExecution> executions = awaitAllBulkImportJobCompletion();
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List<JobExecution> executions = awaitAllBulkImportJobCompletion();
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assertEquals("testFlow_TransactionRows", executions.get(0).getJobParameters().getString(BulkExportJobConfig.JOB_DESCRIPTION));
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assertEquals("testFlow_TransactionRows", executions.get(0).getJobParameters().getString(BatchConstants.JOB_DESCRIPTION));
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runInTransaction(() -> {
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runInTransaction(() -> {
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List<BulkImportJobEntity> jobs = myBulkImportJobDao.findAll();
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List<BulkImportJobEntity> jobs = myBulkImportJobDao.findAll();
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@ -25,6 +25,7 @@ import ca.uhn.fhir.interceptor.model.RequestPartitionId;
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import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
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import ca.uhn.fhir.jpa.api.dao.DaoRegistry;
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import ca.uhn.fhir.jpa.api.dao.IFhirResourceDao;
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import ca.uhn.fhir.jpa.api.dao.IFhirResourceDao;
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import ca.uhn.fhir.jpa.api.model.DaoMethodOutcome;
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import ca.uhn.fhir.jpa.api.model.DaoMethodOutcome;
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import ca.uhn.fhir.jpa.batch.config.BatchConstants;
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import ca.uhn.fhir.jpa.batch.log.Logs;
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import ca.uhn.fhir.jpa.batch.log.Logs;
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import ca.uhn.fhir.jpa.partition.SystemRequestDetails;
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import ca.uhn.fhir.jpa.partition.SystemRequestDetails;
|
||||||
import ca.uhn.fhir.parser.IParser;
|
import ca.uhn.fhir.parser.IParser;
|
||||||
|
@ -51,10 +52,10 @@ public abstract class BaseResourceToFileWriter implements ItemWriter<List<IBaseR
|
||||||
|
|
||||||
protected ByteArrayOutputStream myOutputStream;
|
protected ByteArrayOutputStream myOutputStream;
|
||||||
|
|
||||||
@Value("#{stepExecutionContext['bulkExportCollectionEntityId']}")
|
@Value("#{stepExecutionContext['" + BatchConstants.JOB_COLLECTION_ENTITY_ID + "']}")
|
||||||
protected Long myBulkExportCollectionEntityId;
|
protected Long myBulkExportCollectionEntityId;
|
||||||
|
|
||||||
@Value("#{stepExecutionContext['resourceType']}")
|
@Value("#{stepExecutionContext['" + BatchConstants.JOB_EXECUTION_RESOURCE_TYPE + "']}")
|
||||||
protected String myResourceType;
|
protected String myResourceType;
|
||||||
|
|
||||||
protected IFhirResourceDao myBinaryDao;
|
protected IFhirResourceDao myBinaryDao;
|
||||||
|
|
Loading…
Reference in New Issue