Fix missing qualifier search for reference search parameters (#6306)
* Fix missing qualifier search for reference search parameter. Reuse tests and run them for both indexing enabled and disabled. * Fix edge case where the search parameter has multiple paths. Add a test. Fix some of the compile warnings in a test class. * Fix test setup.
This commit is contained in:
Martha Mitran
GitHub
parent
4aea94ccb6
commit
20d3e6bb25
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@ -0,0 +1,6 @@
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---
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type: fix
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issue: 6305
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title: "Previously, when having StorageSettings#getIndexMissingFields() == IndexEnabledEnum.DISABLED (default value)
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and attempting to search with the missing qualifier against a resource type with multiple search parameters of type reference,
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the returned results would be incorrect. This has been fixed."
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@ -800,14 +800,19 @@ public class ResourceLinkPredicateBuilder extends BaseJoiningPredicateBuilder im
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subquery.addCustomColumns(1);
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subquery.addFromTable(getTable());
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String resourceType = theParams.getResourceTablePredicateBuilder().getResourceType();
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RuntimeSearchParam paramDefinition =
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mySearchParamRegistry.getRuntimeSearchParam(resourceType, theParams.getParamName());
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List<String> pathList = paramDefinition.getPathsSplitForResourceType(resourceType);
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Condition subQueryCondition = ComboCondition.and(
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BinaryCondition.equalTo(
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getResourceIdColumn(),
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theParams.getResourceTablePredicateBuilder().getResourceIdColumn()),
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BinaryCondition.equalTo(
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getResourceTypeColumn(),
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generatePlaceholder(
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theParams.getResourceTablePredicateBuilder().getResourceType())));
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BinaryCondition.equalTo(getResourceTypeColumn(), generatePlaceholder(resourceType)),
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ComboCondition.or(pathList.stream()
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.map(path -> BinaryCondition.equalTo(getColumnSourcePath(), generatePlaceholder(path)))
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.toArray(BinaryCondition[]::new)));
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subquery.addCondition(subQueryCondition);
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File diff suppressed because it is too large
Load Diff
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@ -217,7 +217,7 @@ import static org.mockito.Mockito.when;
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public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ResourceProviderR4Test.class);
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private SearchCoordinatorSvcImpl mySearchCoordinatorSvcRaw;
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private CapturingInterceptor myCapturingInterceptor = new CapturingInterceptor();
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private final CapturingInterceptor myCapturingInterceptor = new CapturingInterceptor();
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@Autowired
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private ISearchDao mySearchEntityDao;
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@ -413,15 +413,15 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient pt1 = new Patient();
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pt1.addName().setFamily("Elizabeth");
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String pt1id = myPatientDao.create(pt1).getId().toUnqualifiedVersionless().getValue();
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String pt1id = myPatientDao.create(pt1, mySrd).getId().toUnqualifiedVersionless().getValue();
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Patient pt2 = new Patient();
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pt2.addName().setFamily("fghijk");
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String pt2id = myPatientDao.create(pt2).getId().toUnqualifiedVersionless().getValue();
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String pt2id = myPatientDao.create(pt2, mySrd).getId().toUnqualifiedVersionless().getValue();
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Patient pt3 = new Patient();
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pt3.addName().setFamily("zzzzz");
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myPatientDao.create(pt3).getId().toUnqualifiedVersionless().getValue();
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myPatientDao.create(pt3, mySrd).getId().toUnqualifiedVersionless().getValue();
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Bundle output = myClient
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@ -450,7 +450,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient pt1 = new Patient();
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pt1.addName().setFamily("Smith%");
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String pt1id = myPatientDao.create(pt1).getId().toUnqualifiedVersionless().getValue();
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String pt1id = myPatientDao.create(pt1, mySrd).getId().toUnqualifiedVersionless().getValue();
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Bundle output = myClient
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.search()
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@ -463,7 +463,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient pt2 = new Patient();
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pt2.addName().setFamily("Sm%ith");
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String pt2id = myPatientDao.create(pt2).getId().toUnqualifiedVersionless().getValue();
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String pt2id = myPatientDao.create(pt2, mySrd).getId().toUnqualifiedVersionless().getValue();
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output = myClient
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.search()
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@ -740,7 +740,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient p = new Patient();
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p.addName().setFamily("FAM").addGiven("GIV");
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IIdType id = myPatientDao.create(p).getId();
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IIdType id = myPatientDao.create(p, mySrd).getId();
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myClient.read().resource("Patient").withId(id.toUnqualifiedVersionless()).execute();
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@ -763,7 +763,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient p = new Patient();
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p.addName().setFamily("FAM").addGiven("GIV");
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IIdType id = myPatientDao.create(p).getId().toUnqualifiedVersionless();
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IIdType id = myPatientDao.create(p, mySrd).getId().toUnqualifiedVersionless();
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myClient
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.delete()
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@ -1025,57 +1025,58 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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public void testCreateAndReadBackResourceWithContainedReferenceToContainer() {
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myFhirContext.setParserErrorHandler(new StrictErrorHandler());
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String input = "{\n" +
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" \"resourceType\": \"Organization\",\n" +
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" \"id\": \"1\",\n" +
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" \"meta\": {\n" +
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" \"tag\": [\n" +
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" {\n" +
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" \"system\": \"https://blah.org/deployment\",\n" +
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" \"code\": \"e69414dd-b5c2-462d-bcfd-9d04d6b16596\",\n" +
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" \"display\": \"DEPLOYMENT\"\n" +
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" },\n" +
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" {\n" +
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" \"system\": \"https://blah.org/region\",\n" +
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" \"code\": \"b47d7a5b-b159-4bed-a8f8-3258e6603adb\",\n" +
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" \"display\": \"REGION\"\n" +
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" },\n" +
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" {\n" +
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" \"system\": \"https://blah.org/provider\",\n" +
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" \"code\": \"28c30004-0333-40cf-9e7f-3f9e080930bd\",\n" +
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" \"display\": \"PROVIDER\"\n" +
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" }\n" +
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" ]\n" +
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" },\n" +
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" \"contained\": [\n" +
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" {\n" +
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" \"resourceType\": \"Location\",\n" +
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" \"id\": \"2\",\n" +
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" \"position\": {\n" +
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" \"longitude\": 51.443238301454289,\n" +
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" \"latitude\": 7.34196905697293\n" +
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" },\n" +
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" \"managingOrganization\": {\n" +
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" \"reference\": \"#\"\n" +
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" }\n" +
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" }\n" +
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" ],\n" +
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" \"type\": [\n" +
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" {\n" +
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" \"coding\": [\n" +
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" {\n" +
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" \"system\": \"https://blah.org/fmc/OrganizationType\",\n" +
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" \"code\": \"CLINIC\",\n" +
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" \"display\": \"Clinic\"\n" +
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" }\n" +
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" ]\n" +
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" }\n" +
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" ],\n" +
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" \"name\": \"testOrg\"\n" +
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"}";
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String input = """
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{
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"resourceType": "Organization",
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"id": "1",
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"meta": {
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"tag": [
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{
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"system": "https://blah.org/deployment",
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"code": "e69414dd-b5c2-462d-bcfd-9d04d6b16596",
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"display": "DEPLOYMENT"
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},
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{
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"system": "https://blah.org/region",
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"code": "b47d7a5b-b159-4bed-a8f8-3258e6603adb",
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"display": "REGION"
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},
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{
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"system": "https://blah.org/provider",
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"code": "28c30004-0333-40cf-9e7f-3f9e080930bd",
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"display": "PROVIDER"
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}
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]
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},
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"contained": [
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{
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"resourceType": "Location",
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"id": "2",
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"position": {
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"longitude": 51.443238301454289,
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"latitude": 7.34196905697293
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},
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"managingOrganization": {
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"reference": "#"
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}
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}
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],
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"type": [
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{
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"coding": [
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{
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"system": "https://blah.org/fmc/OrganizationType",
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"code": "CLINIC",
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"display": "Clinic"
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}
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]
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}
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],
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"name": "testOrg"
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}""";
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Organization org = myFhirContext.newJsonParser().parseResource(Organization.class, input);
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IIdType id = myOrganizationDao.create(org).getId();
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IIdType id = myOrganizationDao.create(org, mySrd).getId();
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org = myOrganizationDao.read(id);
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String output = myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(org);
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@ -1095,9 +1096,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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}
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List<IBaseResource> outcome = myClient.transaction().withResources(resources).prettyPrint().encodedXml().execute();
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runInTransaction(() -> {
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assertEquals(100, myResourceTableDao.count());
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});
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runInTransaction(() -> assertEquals(100, myResourceTableDao.count()));
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Bundle found = myClient
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.search()
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@ -1306,7 +1305,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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}
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@Test
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public void testCreateQuestionnaireResponseWithValidation() throws IOException {
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public void testCreateQuestionnaireResponseWithValidation() {
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CodeSystem cs = new CodeSystem();
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cs.setUrl("http://cs");
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cs.setStatus(Enumerations.PublicationStatus.ACTIVE);
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@ -1906,8 +1905,8 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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* Try it with a raw socket call. The Apache client won't let us use the unescaped "|" in the URL but we want to make sure that works too..
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*/
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Socket sock = new Socket();
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sock.setSoTimeout(3000);
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try {
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try (sock) {
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sock.setSoTimeout(3000);
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sock.connect(new InetSocketAddress("localhost", myPort));
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sock.getOutputStream().write(("DELETE /fhir/context/Patient?identifier=http://ghh.org/patient|" + methodName + " HTTP/1.1\n").getBytes(StandardCharsets.UTF_8));
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sock.getOutputStream().write("Host: localhost\n".getBytes(StandardCharsets.UTF_8));
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@ -1915,7 +1914,6 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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BufferedReader socketInput = new BufferedReader(new InputStreamReader(sock.getInputStream()));
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// String response = "";
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StringBuilder b = new StringBuilder();
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char[] buf = new char[1000];
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while (socketInput.read(buf) != -1) {
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@ -1925,9 +1923,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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ourLog.debug("Resp: {}", resp);
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} catch (SocketTimeoutException e) {
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e.printStackTrace();
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} finally {
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sock.close();
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ourLog.debug(e.getMessage(), e);
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}
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Thread.sleep(1000);
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@ -2398,7 +2394,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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assertThat(idValues).as(idValues.toString()).hasSize(10);
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idValues = searchAndReturnUnqualifiedIdValues(myServerBase + "/_history?_at=gt" + InstantDt.withCurrentTime().getYear());
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assertThat(idValues).hasSize(0);
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assertThat(idValues).isEmpty();
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}
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@ -2427,7 +2423,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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myMemoryCacheService.invalidateCaches(MemoryCacheService.CacheEnum.PID_TO_FORCED_ID);
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}
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Bundle history = myClient.history().onInstance(id.getValue()).andReturnBundle(Bundle.class).execute();
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Bundle history = myClient.history().onInstance(id.getValue()).returnBundle(Bundle.class).execute();
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assertEquals(1, history.getEntry().size());
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BundleEntryComponent historyEntry0 = history.getEntry().get(0);
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// validate entry.fullUrl
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@ -2476,7 +2472,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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myMemoryCacheService.invalidateCaches(MemoryCacheService.CacheEnum.PID_TO_FORCED_ID);
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}
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Bundle history = myClient.history().onInstance(id.getValue()).andReturnBundle(Bundle.class).execute();
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Bundle history = myClient.history().onInstance(id.getValue()).returnBundle(Bundle.class).execute();
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assertEquals(1, history.getEntry().size());
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BundleEntryComponent historyEntry0 = history.getEntry().get(0);
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// validate entry.fullUrl
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@ -2508,7 +2504,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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ourLog.info("Res ID: {}", id);
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Bundle history = myClient.history().onInstance(id.getValue()).andReturnBundle(Bundle.class).prettyPrint().summaryMode(SummaryEnum.DATA).execute();
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Bundle history = myClient.history().onInstance(id.getValue()).returnBundle(Bundle.class).prettyPrint().summaryMode(SummaryEnum.DATA).execute();
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assertThat(history.getEntry()).hasSize(3);
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assertEquals(id.withVersion("3").getValue(), history.getEntry().get(0).getResource().getId());
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assertThat(((Patient) history.getEntry().get(0).getResource()).getName()).hasSize(1);
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@ -2746,7 +2742,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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int total = 20;
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Organization org = new Organization();
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org.setName("ORG");
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IIdType orgId = myOrganizationDao.create(org).getId().toUnqualifiedVersionless();
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IIdType orgId = myOrganizationDao.create(org, mySrd).getId().toUnqualifiedVersionless();
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Coding tagCode = new Coding();
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tagCode.setCode("test");
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@ -2757,7 +2753,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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.addTag(tagCode);
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t.setStatus(Task.TaskStatus.REQUESTED);
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t.getOwner().setReference(orgId.getValue());
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myTaskDao.create(t);
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myTaskDao.create(t, mySrd);
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}
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HashSet<String> ids = new HashSet<>();
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@ -2835,12 +2831,12 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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if (orgCount > 0) {
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Organization org = new Organization();
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org.setName("ORG");
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IIdType orgId = myOrganizationDao.create(org).getId().toUnqualifiedVersionless();
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IIdType orgId = myOrganizationDao.create(org, mySrd).getId().toUnqualifiedVersionless();
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orgCount--;
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t.getOwner().setReference(orgId.getValue());
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}
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myTaskDao.create(t);
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myTaskDao.create(t, mySrd);
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}
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}
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@ -2909,12 +2905,12 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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if (orgCount > 0) {
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Organization org = new Organization();
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org.setName("ORG");
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IIdType orgId = myOrganizationDao.create(org).getId().toUnqualifiedVersionless();
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IIdType orgId = myOrganizationDao.create(org, mySrd).getId().toUnqualifiedVersionless();
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orgCount--;
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t.getOwner().setReference(orgId.getValue());
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}
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myTaskDao.create(t);
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myTaskDao.create(t, mySrd);
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}
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}
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@ -2961,13 +2957,13 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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public void testIncludeCountDoesntIncludeIncludes() {
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Organization org = new Organization();
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org.setName("ORG");
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IIdType orgId = myOrganizationDao.create(org).getId().toUnqualifiedVersionless();
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IIdType orgId = myOrganizationDao.create(org, mySrd).getId().toUnqualifiedVersionless();
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for (int i = 0; i < 10; i++) {
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Patient pt = new Patient();
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pt.getManagingOrganization().setReference(orgId.getValue());
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pt.addName().setFamily("FAM" + i);
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myPatientDao.create(pt);
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myPatientDao.create(pt, mySrd);
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}
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Bundle bundle = myClient
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@ -3168,7 +3164,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient newPt = myClient.read().resource(Patient.class).withId(pid1.getIdPart()).execute();
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assertEquals("2", newPt.getIdElement().getVersionIdPart());
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assertEquals(false, newPt.getActive());
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assertFalse(newPt.getActive());
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}
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@Test
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@ -3196,7 +3192,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient newPt = myClient.read().resource(Patient.class).withId(pid1.getIdPart()).execute();
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assertEquals("1", newPt.getIdElement().getVersionIdPart());
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assertEquals(true, newPt.getActive());
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assertTrue(newPt.getActive());
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}
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@Test
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@ -3226,7 +3222,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient newPt = myClient.read().resource(Patient.class).withId(pid1.getIdPart()).execute();
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assertEquals("2", newPt.getIdElement().getVersionIdPart());
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assertEquals(false, newPt.getActive());
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assertFalse(newPt.getActive());
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}
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@Test
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@ -3255,7 +3251,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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Patient newPt = myClient.read().resource(Patient.class).withId(pid1.getIdPart()).execute();
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assertEquals("2", newPt.getIdElement().getVersionIdPart());
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assertEquals(false, newPt.getActive());
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assertFalse(newPt.getActive());
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}
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@Test
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@ -3323,12 +3319,12 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
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{
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Bundle returned = myClient.search().forResource(Patient.class).encodedXml().returnBundle(Bundle.class).execute();
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assertThat(returned.getEntry().size()).isGreaterThan(1);
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assertThat(returned.getEntry()).hasSizeGreaterThan(1);
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assertEquals(BundleType.SEARCHSET, returned.getType());
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}
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{
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Bundle returned = myClient.search().forResource(Patient.class).encodedJson().returnBundle(Bundle.class).execute();
|
||||
assertThat(returned.getEntry().size()).isGreaterThan(1);
|
||||
assertThat(returned.getEntry()).hasSizeGreaterThan(1);
|
||||
}
|
||||
}
|
||||
|
||||
|
|
@ -3350,7 +3346,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
}
|
||||
});
|
||||
|
||||
Bundle bundle = myClient.history().onServer().andReturnBundle(Bundle.class).execute();
|
||||
Bundle bundle = myClient.history().onServer().returnBundle(Bundle.class).execute();
|
||||
assertEquals(1, bundle.getTotal());
|
||||
assertThat(bundle.getEntry()).hasSize(1);
|
||||
assertEquals(id2.getIdPart(), bundle.getEntry().get(0).getResource().getIdElement().getIdPart());
|
||||
|
|
@ -3507,15 +3503,6 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
assertThat(text).doesNotContain("\"B\"");
|
||||
assertThat(text).doesNotContain("\"B1\"");
|
||||
}
|
||||
|
||||
|
||||
// HttpGet read = new HttpGet(ourServerBase + "/Observation?patient=P5000000302&_sort:desc=code&code:in=http://fkcfhir.org/fhir/vs/ccdacapddialysisorder");
|
||||
// try (CloseableHttpResponse response = ourHttpClient.execute(read)) {
|
||||
// String text = IOUtils.toString(response.getEntity().getContent(), StandardCharsets.UTF_8);
|
||||
// ourLog.info(text);
|
||||
// assertEquals(Constants.STATUS_HTTP_200_OK, response.getStatusLine().getStatusCode());
|
||||
// assertThat(text).doesNotContain("\"text\",\"type\"");
|
||||
// }
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
@ -3873,9 +3860,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
p.addName().setFamily(methodName + "1");
|
||||
IIdType pid1 = myClient.create().resource(p).execute().getId().toUnqualifiedVersionless();
|
||||
|
||||
Thread.sleep(10);
|
||||
long time1 = System.currentTimeMillis();
|
||||
Thread.sleep(10);
|
||||
|
||||
Patient p2 = new Patient();
|
||||
p2.addName().setFamily(methodName + "2");
|
||||
|
|
@ -4064,9 +4049,6 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
public void testSearchLastUpdatedParamRp() throws InterruptedException {
|
||||
String methodName = "testSearchLastUpdatedParamRp";
|
||||
|
||||
int sleep = 100;
|
||||
Thread.sleep(sleep);
|
||||
|
||||
DateTimeType beforeAny = new DateTimeType(new Date(), TemporalPrecisionEnum.MILLI);
|
||||
IIdType id1a;
|
||||
{
|
||||
|
|
@ -4083,9 +4065,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
id1b = myClient.create().resource(patient).execute().getId().toUnqualifiedVersionless();
|
||||
}
|
||||
|
||||
Thread.sleep(1100);
|
||||
DateTimeType beforeR2 = new DateTimeType(new Date(), TemporalPrecisionEnum.MILLI);
|
||||
Thread.sleep(1100);
|
||||
|
||||
IIdType id2;
|
||||
{
|
||||
|
|
@ -4249,13 +4229,12 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
Bundle bundle = myFhirContext.newXmlParser().parseResource(Bundle.class, resp);
|
||||
matches = bundle.getEntry().size();
|
||||
|
||||
assertThat(matches).isGreaterThan(0);
|
||||
assertThat(matches).isPositive();
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchReturnsSearchDate() throws Exception {
|
||||
Date before = new Date();
|
||||
Thread.sleep(1);
|
||||
|
||||
//@formatter:off
|
||||
Bundle found = myClient
|
||||
|
|
@ -4266,7 +4245,6 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
.execute();
|
||||
//@formatter:on
|
||||
|
||||
Thread.sleep(1);
|
||||
Date after = new Date();
|
||||
|
||||
InstantType updated = found.getMeta().getLastUpdatedElement();
|
||||
|
|
@ -4300,7 +4278,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -4313,7 +4291,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -4326,7 +4304,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -4339,24 +4317,24 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
// > 1m
|
||||
String uri = myServerBase + "/Observation?code-value-quantity=http://" + UrlUtil.escapeUrlParam("loinc.org|2345-7$gt1|http://unitsofmeasure.org|m");
|
||||
ourLog.info("uri = " + uri);
|
||||
ourLog.info("uri = {}", uri);
|
||||
List<String> ids = searchAndReturnUnqualifiedVersionlessIdValues(uri);
|
||||
assertThat(ids).hasSize(3);
|
||||
|
||||
//>= 100cm
|
||||
uri = myServerBase + "/Observation?code-value-quantity=http://" + UrlUtil.escapeUrlParam("loinc.org|2345-7$gt100|http://unitsofmeasure.org|cm");
|
||||
ourLog.info("uri = " + uri);
|
||||
ourLog.info("uri = {}", uri);
|
||||
ids = searchAndReturnUnqualifiedVersionlessIdValues(uri);
|
||||
assertThat(ids).hasSize(3);
|
||||
|
||||
//>= 10dm
|
||||
uri = myServerBase + "/Observation?code-value-quantity=http://" + UrlUtil.escapeUrlParam("loinc.org|2345-7$gt10|http://unitsofmeasure.org|dm");
|
||||
ourLog.info("uri = " + uri);
|
||||
ourLog.info("uri = {}", uri);
|
||||
ids = searchAndReturnUnqualifiedVersionlessIdValues(uri);
|
||||
assertThat(ids).hasSize(3);
|
||||
}
|
||||
|
|
@ -4381,7 +4359,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -4392,7 +4370,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -4403,7 +4381,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -4414,7 +4392,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
String uri;
|
||||
|
|
@ -4451,7 +4429,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -4462,7 +4440,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -4474,7 +4452,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
myCaptureQueriesListener.clear();
|
||||
|
|
@ -4490,8 +4468,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
//-- check use normalized quantity table to search
|
||||
String searchSql = myCaptureQueriesListener.getSelectQueries().get(0).getSql(true, true);
|
||||
assertThat(searchSql).doesNotContain("HFJ_SPIDX_QUANTITY t0");
|
||||
assertThat(searchSql).contains("HFJ_SPIDX_QUANTITY_NRML");
|
||||
assertThat(searchSql).doesNotContain("HFJ_SPIDX_QUANTITY t0").contains("HFJ_SPIDX_QUANTITY_NRML");
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
@ -5044,7 +5021,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
oid1 = myObservationDao.create(obs, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -5056,7 +5033,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
oid2 = myObservationDao.create(obs, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -5068,7 +5045,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
oid3 = myObservationDao.create(obs, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -5080,7 +5057,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
oid4 = myObservationDao.create(obs, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
String uri = myServerBase + "/Observation?_sort=code-value-quantity";
|
||||
|
|
@ -5092,7 +5069,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
found = myFhirContext.newXmlParser().parseResource(Bundle.class, output);
|
||||
}
|
||||
|
||||
ourLog.debug("Bundle: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(found));
|
||||
ourLog.debug("Bundle: {}\n", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(found));
|
||||
|
||||
List<IIdType> list = toUnqualifiedVersionlessIds(found);
|
||||
assertThat(found.getEntry()).hasSize(4);
|
||||
|
|
@ -5129,7 +5106,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
oid1 = myObservationDao.create(obs, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -5145,7 +5122,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
oid2 = myObservationDao.create(obs, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -5161,7 +5138,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
oid3 = myObservationDao.create(obs, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -5176,7 +5153,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
comp.setValue(new Quantity().setValue(250));
|
||||
oid4 = myObservationDao.create(obs, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
String uri = myServerBase + "/Observation?_sort=combo-code-value-quantity";
|
||||
|
|
@ -5188,7 +5165,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
found = myFhirContext.newXmlParser().parseResource(Bundle.class, output);
|
||||
}
|
||||
|
||||
ourLog.debug("Bundle: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(found));
|
||||
ourLog.debug("Bundle: {}\n", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(found));
|
||||
|
||||
List<IIdType> list = toUnqualifiedVersionlessIds(found);
|
||||
assertThat(found.getEntry()).hasSize(4);
|
||||
|
|
@ -5264,9 +5241,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
List<IIdType> list = toUnqualifiedVersionlessIds(found);
|
||||
ourLog.info(methodName + " found: " + list.toString() + " - Wanted " + orgMissing + " but not " + orgNotMissing);
|
||||
assertThat(list).doesNotContain(orgNotMissing);
|
||||
assertThat(list).doesNotContain(deletedIdMissingTrue);
|
||||
assertThat(list).contains(orgMissing);
|
||||
assertThat(list).doesNotContain(orgNotMissing).doesNotContain(deletedIdMissingTrue).contains(orgMissing);
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
@ -5927,7 +5902,6 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
}
|
||||
|
||||
Date before = new Date();
|
||||
Thread.sleep(100);
|
||||
|
||||
pt = new Patient();
|
||||
pt.setId(id.getIdPart());
|
||||
|
|
@ -6450,7 +6424,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
cc.addCoding().setCode("2345-7").setSystem("http://loinc.org");
|
||||
obs.setValue(new Quantity().setValueElement(new DecimalType(125.12)).setUnit("CM").setSystem(UcumServiceUtil.UCUM_CODESYSTEM_URL).setCode("cm"));
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
|
||||
IIdType opid1 = myObservationDao.create(obs, mySrd).getId();
|
||||
|
||||
|
|
@ -6463,7 +6437,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
cc.addCoding().setCode("2345-7").setSystem("http://loinc.org");
|
||||
obs.setValue(new Quantity().setValueElement(new DecimalType(24.12)).setUnit("CM").setSystem(UcumServiceUtil.UCUM_CODESYSTEM_URL).setCode("cm"));
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
|
||||
myObservationDao.update(obs, mySrd);
|
||||
}
|
||||
|
|
@ -6479,7 +6453,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -6492,7 +6466,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
{
|
||||
|
|
@ -6505,25 +6479,25 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
|
||||
myObservationDao.create(obs, mySrd);
|
||||
|
||||
ourLog.debug("Observation: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
ourLog.debug("Observation: {}", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(obs));
|
||||
}
|
||||
|
||||
// > 1m
|
||||
String uri = myServerBase + "/Observation?code-value-quantity=http://" + UrlUtil.escapeUrlParam("loinc.org|2345-7$gt1|http://unitsofmeasure.org|m");
|
||||
ourLog.info("uri = " + uri);
|
||||
ourLog.info("uri = {}", uri);
|
||||
List<String> ids = searchAndReturnUnqualifiedVersionlessIdValues(uri);
|
||||
assertThat(ids).hasSize(2);
|
||||
|
||||
|
||||
//>= 100cm
|
||||
uri = myServerBase + "/Observation?code-value-quantity=http://" + UrlUtil.escapeUrlParam("loinc.org|2345-7$gt100|http://unitsofmeasure.org|cm");
|
||||
ourLog.info("uri = " + uri);
|
||||
ourLog.info("uri = {}", uri);
|
||||
ids = searchAndReturnUnqualifiedVersionlessIdValues(uri);
|
||||
assertThat(ids).hasSize(2);
|
||||
|
||||
//>= 10dm
|
||||
uri = myServerBase + "/Observation?code-value-quantity=http://" + UrlUtil.escapeUrlParam("loinc.org|2345-7$gt10|http://unitsofmeasure.org|dm");
|
||||
ourLog.info("uri = " + uri);
|
||||
ourLog.info("uri = {}", uri);
|
||||
ids = searchAndReturnUnqualifiedVersionlessIdValues(uri);
|
||||
assertThat(ids).hasSize(2);
|
||||
}
|
||||
|
|
@ -6540,7 +6514,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
patient.setBirthDateElement(new DateType("2073"));
|
||||
pid0 = myPatientDao.create(patient, mySrd).getId().toUnqualifiedVersionless();
|
||||
|
||||
ourLog.debug("Patient: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(patient));
|
||||
ourLog.debug("Patient: {}\n", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(patient));
|
||||
|
||||
ourLog.info("pid0 " + pid0);
|
||||
}
|
||||
|
|
@ -6553,7 +6527,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
String resp = IOUtils.toString(response.getEntity().getContent(), StandardCharsets.UTF_8);
|
||||
ourLog.info(resp);
|
||||
Bundle bundle = myFhirContext.newXmlParser().parseResource(Bundle.class, resp);
|
||||
ourLog.debug("Patient: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
|
||||
ourLog.debug("Patient: {}\n", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
|
||||
}
|
||||
|
||||
uri = myServerBase + "/Patient?_total=accurate&birthdate=gt2072-01-01";
|
||||
|
|
@ -6564,7 +6538,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
String resp = IOUtils.toString(response.getEntity().getContent(), StandardCharsets.UTF_8);
|
||||
ourLog.info(resp);
|
||||
Bundle bundle = myFhirContext.newXmlParser().parseResource(Bundle.class, resp);
|
||||
ourLog.debug("Patient: \n" + myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
|
||||
ourLog.debug("Patient: {}\n", myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(bundle));
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -6995,9 +6969,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
&& theInput.IsEnforceRefOnType
|
||||
&& theInput.IsEnforceRefOnWrite).isFalse();
|
||||
} catch (InvalidRequestException ex) {
|
||||
assertThat(ex.getMessage().contains(
|
||||
"Invalid resource reference"
|
||||
)).as(ex.getMessage()).isTrue();
|
||||
assertThat(ex.getMessage()).as(ex.getMessage()).contains("Invalid resource reference");
|
||||
} finally {
|
||||
myStorageSettings.setEnforceReferentialIntegrityOnWrite(isEnforceRefOnWrite);
|
||||
myStorageSettings.setEnforceReferenceTargetTypes(isEnforceRefTargetTypes);
|
||||
|
|
@ -7331,9 +7303,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
patient.setBirthDate(cal.getTime());
|
||||
}
|
||||
return patient;
|
||||
}, (isMissing) -> {
|
||||
return doSearch(Patient.class, Patient.BIRTHDATE.isMissing(isMissing));
|
||||
});
|
||||
}, (isMissing) -> doSearch(Patient.class, Patient.BIRTHDATE.isMissing(isMissing)));
|
||||
}
|
||||
|
||||
@ParameterizedTest
|
||||
|
|
@ -7346,9 +7316,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
patient.setGender(AdministrativeGender.FEMALE);
|
||||
}
|
||||
return patient;
|
||||
}, isMissing -> {
|
||||
return doSearch(Patient.class, Patient.GENDER.isMissing(isMissing));
|
||||
});
|
||||
}, isMissing -> doSearch(Patient.class, Patient.GENDER.isMissing(isMissing)));
|
||||
}
|
||||
|
||||
@ParameterizedTest
|
||||
|
|
@ -7364,9 +7332,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
patient.setGeneralPractitioner(Collections.singletonList(new Reference(practitionerId)));
|
||||
}
|
||||
return patient;
|
||||
}, isMissing -> {
|
||||
return doSearch(Patient.class, Patient.GENERAL_PRACTITIONER.isMissing(isMissing));
|
||||
});
|
||||
}, isMissing -> doSearch(Patient.class, Patient.GENERAL_PRACTITIONER.isMissing(isMissing)));
|
||||
}
|
||||
|
||||
@ParameterizedTest
|
||||
|
|
@ -7409,9 +7375,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
sp.setUrl("http://example.com");
|
||||
}
|
||||
return sp;
|
||||
}, isMissing -> {
|
||||
return doSearch(SearchParameter.class, SearchParameter.URL.isMissing(isMissing));
|
||||
});
|
||||
}, isMissing -> doSearch(SearchParameter.class, SearchParameter.URL.isMissing(isMissing)));
|
||||
}
|
||||
|
||||
@ParameterizedTest
|
||||
|
|
@ -7424,9 +7388,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
obs.setValue(new Quantity(3));
|
||||
}
|
||||
return obs;
|
||||
}, isMissing -> {
|
||||
return doSearch(Observation.class, Observation.VALUE_QUANTITY.isMissing(isMissing));
|
||||
});
|
||||
}, isMissing -> doSearch(Observation.class, Observation.VALUE_QUANTITY.isMissing(isMissing)));
|
||||
}
|
||||
|
||||
@ParameterizedTest
|
||||
|
|
@ -7457,7 +7419,7 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
|
|||
Y doTask(X theInput);
|
||||
}
|
||||
|
||||
private static class MissingSearchTestParameters {
|
||||
public static class MissingSearchTestParameters {
|
||||
/**
|
||||
* The setting for IndexMissingFields
|
||||
*/
|
||||
|
|
|
|||
Loading…
Reference in New Issue