Work on term
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@ -66,7 +66,6 @@ import org.hibernate.search.annotations.TokenizerDef;
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import ca.uhn.fhir.jpa.entity.TermConceptParentChildLink.RelationshipTypeEnum;
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import ca.uhn.fhir.jpa.search.DeferConceptIndexingInterceptor;
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//@formatter:off
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@Entity
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@Indexed(interceptor=DeferConceptIndexingInterceptor.class)
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@Table(name="TRM_CONCEPT", uniqueConstraints= {
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@ -80,7 +79,6 @@ import ca.uhn.fhir.jpa.search.DeferConceptIndexingInterceptor;
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filters = {
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})
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})
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//@formatter:on
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public class TermConcept implements Serializable {
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private static final int MAX_DESC_LENGTH = 400;
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(TermConcept.class);
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@ -102,7 +100,6 @@ public class TermConcept implements Serializable {
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@Fields({ @Field(name = "myCodeSystemVersionPid") })
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private long myCodeSystemVersionPid;
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//@formatter:off
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@Column(name="DISPLAY", length=MAX_DESC_LENGTH, nullable=true)
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@Fields({
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@Field(name = "myDisplay", index = org.hibernate.search.annotations.Index.YES, store = Store.YES, analyze = Analyze.YES, analyzer = @Analyzer(definition = "standardAnalyzer")),
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@ -111,8 +108,10 @@ public class TermConcept implements Serializable {
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@Field(name = "myDisplayPhonetic", index = org.hibernate.search.annotations.Index.YES, store = Store.NO, analyze = Analyze.YES, analyzer = @Analyzer(definition = "autocompletePhoneticAnalyzer"))
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})
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private String myDisplay;
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//@formatter:on
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@OneToMany(mappedBy="myConcept")
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private Collection<TermConceptProperty> myProperties;
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@Id()
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@SequenceGenerator(name = "SEQ_CONCEPT_PID", sequenceName = "SEQ_CONCEPT_PID")
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@GeneratedValue(strategy = GenerationType.AUTO, generator = "SEQ_CONCEPT_PID")
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@ -0,0 +1,71 @@
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package ca.uhn.fhir.jpa.entity;
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/*
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* #%L
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* HAPI FHIR JPA Server
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* %%
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* Copyright (C) 2014 - 2017 University Health Network
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import java.io.Serializable;
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import javax.persistence.*;
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@Entity
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@Table(name = "TRM_CONCEPT_PROPERTY", uniqueConstraints = {
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}, indexes = {
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})
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public class TermConceptProperty implements Serializable {
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private static final long serialVersionUID = 1L;
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@ManyToOne
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@JoinColumn(name = "CONCEPT_PID", referencedColumnName = "PID", foreignKey = @ForeignKey(name = "FK_CONCEPTPROP_CONCEPT"))
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private TermConcept myConcept;
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@Id()
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@SequenceGenerator(name = "SEQ_CONCEPT_PROP_PID", sequenceName = "SEQ_CONCEPT_PROP_PID")
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@GeneratedValue(strategy = GenerationType.AUTO, generator = "SEQ_CONCEPT_PROP_PID")
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@Column(name = "PID")
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private Long myId;
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@Column(name="PROP_KEY", length=200, nullable=false)
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private String myKey;
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@Column(name="PROP_VAL", length=200, nullable=true)
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private String myValue;
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public String getKey() {
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return myKey;
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}
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public String getValue() {
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return myValue;
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}
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public void setConcept(TermConcept theConcept) {
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myConcept = theConcept;
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}
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public void setKey(String theKey) {
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myKey = theKey;
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}
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public void setValue(String theValue) {
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myValue = theValue;
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}
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}
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@ -290,6 +290,8 @@ public class FhirResourceDaoDstu3TerminologyTest extends BaseJpaDstu3Test {
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@Test
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public void testExpandWithOpEquals() {
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ValueSet result = myValueSetDao.expandByIdentifier("http://hl7.org/fhir/ValueSet/doc-typecodes", "");
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ourLog.info(myFhirCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(result));
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}
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@ -8,6 +8,7 @@ import static org.junit.Assert.assertThat;
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import static org.junit.Assert.fail;
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import static org.mockito.Matchers.any;
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import static org.mockito.Mockito.mock;
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import static org.mockito.Mockito.times;
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import static org.mockito.Mockito.verify;
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import java.io.ByteArrayOutputStream;
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@ -78,8 +79,18 @@ public class TerminologyLoaderSvcTest {
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RequestDetails details = mock(RequestDetails.class);
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mySvc.loadLoinc(list(bos1.toByteArray(), bos2.toByteArray()), details);
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verify(myTermSvc, times(1)).storeNewCodeSystemVersion(mySystemCaptor.capture(), myCsvCaptor.capture(), any(RequestDetails.class));
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TermCodeSystemVersion ver = myCsvCaptor.getValue();
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TermConcept code = ver.getConcepts().iterator().next();
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assertEquals("10013-1", code.getCode());
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}
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@Captor
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private ArgumentCaptor<String> mySystemCaptor;
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/**
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* This is just for trying stuff, it won't run without
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