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Rel 6 4 mb update (#5741) 

* Add backport and folder

* Add missing changelog

* Cherry p icking

* Update upgrade.md

* added new version version.yaml

* Provide default update time to batch2 entities (#4630)

* Data migration - default value for batch2 UPDATE_TIME

* fixed changelog, added 6.4.3 changelog folder

* Spotless

---------

Co-authored-by: Kevin Dougan SmileCDR <72025369+KevinDougan-SmileCDR@users.noreply.github.com>
Co-authored-by: longma1 <long@smilecdr.com>
Co-authored-by: michaelabuckley <michaelabuckley@gmail.com>
This commit is contained in:
Tadgh 2024-02-27 12:50:01 -05:00 committed by GitHub
parent 497b9f2e53
commit 28b8662637
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GPG Key ID: B5690EEEBB952194
15 changed files with 82 additions and 11 deletions
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4
hapi-fhir-base/src/main/java/ca/uhn/fhir/util/VersionEnum.java
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@ -115,6 +115,10 @@ public enum VersionEnum {
V6_4_0,
V6_4_1,
V6_4_2,
V6_4_3,
V6_4_4,
V6_4_5,
V6_4_6,
V6_5_0,
V6_6_0,
V6_6_1,

2
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_3/upgrade.md
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@ -0,0 +1,2 @@
The known issue with Bulk Export in HAPI 6.4.0 has been resolved. Bulk export functionality is now
more performant at large scale, and does not generate occasional incomplete file reports.

4
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_3/version.yaml
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@ -1,3 +1,3 @@
---
release-date: "2023-03-15"
codename: "Vishwa"
release-date: "2023-03-08"
codename: "Wizard"

5
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_4/4652-mssql-migration-failure.yaml Normal file
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@ -0,0 +1,5 @@
---
type: fix
issue: 4652
backport: 6.4.5
title: "Fix for MSSQL migration failure related to Job instance UPDATE_TIME column default value not being set correctly"

0
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_4/upgrade.md Normal file
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3
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_4/version.yaml Normal file
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@ -0,0 +1,3 @@
---
release-date: "2023-03-15"
codename: "Wizard"

10
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_5/upgrade.md Normal file
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@ -0,0 +1,10 @@
This release fixes an accidental behaviour that was introduced in 6.4.2. From that version up until now, if a Tag Definition was created with a null `userSelected` element,
it would still be stored as `false` instead of `null`. This release fixes that behaviour, and now correctly stores the value as `null` if it is not specified. If you do not use this field, no action needs to be taken. However, if you do use this field, the `userSelected` elements stored from the installation of version 2023.02.R02 up until now are potentially suspect. The following SQL can be executed to clear the `false` value from this table and replace it with null, if desired:
```sql
update HFJ_TAG_DEF
set TAG_USER_SELECTED = null
where TAG_USER_SELECTED = 'false'
```
This will wholesale replace all `userSelected` fields.

3
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_5/version.yaml Normal file
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@ -0,0 +1,3 @@
---
release-date: "2023-03-15"
codename: "Wizard"

0
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_6/upgrade.md Normal file
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3
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_6/version.yaml Normal file
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@ -0,0 +1,3 @@
---
release-date: "2023-06-28"
codename: "Wizard"

1
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_6_0/4597-possible-resource-duplication-on-conditional-create-update-operations.yaml
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@ -2,4 +2,5 @@
type: fix
issue: 4597
jira: SMILE-5993
backport: 6.4.4
title: "Simultaneous conditional create or create-on-update operations no longer create duplicate matching resources."

1
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_4_0/4622-batch2-chunk-io.yaml → hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_6_0/4622-batch2-chunk-io.yaml
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@ -1,4 +1,5 @@
---
type: perf
issue: 4622
backport: 6.4.3
title: "The batch system now reads less data during the maintenance pass. This avoids slowdowns on large systems."

5
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_6_0/4630-instance-default-update-time.yaml Normal file
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@ -0,0 +1,5 @@
---
type: fix
issue: 4630
backport: 6.4.3
title: "Default values are provided for the new UPDATE_TIME columns so batch jobs started before an upgrade can complete."

1
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_8_0/4813-fix-tag-nonunique.yaml
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@ -1,4 +1,5 @@
---
type: fix
issue: 4813
backport: 6.4.5
title: "Under heavy concurrency, a bug resulted in identical tag definitions being rejected with a `NonUniqueResultException` some of the time. This has been corrected."

51
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/migrate/tasks/HapiFhirJpaMigrationTasks.java
View File

@ -221,15 +221,6 @@ public class HapiFhirJpaMigrationTasks extends BaseMigrationTasks<VersionEnum> {
protected void init680() {
Builder version = forVersion(VersionEnum.V6_8_0);
// HAPI-FHIR #4801 - Add New Index On HFJ_RESOURCE
Builder.BuilderWithTableName resourceTable = version.onTable("HFJ_RESOURCE");
resourceTable
.addIndex("20230502.1", "IDX_RES_RESID_UPDATED")
.unique(false)
.online(true)
.withColumns("RES_ID", "RES_UPDATED", "PARTITION_ID");
Builder.BuilderWithTableName tagDefTable = version.onTable("HFJ_TAG_DEF");
tagDefTable.dropIndex("20230505.1", "IDX_TAGDEF_TYPESYSCODEVERUS");
@ -731,6 +722,48 @@ public class HapiFhirJpaMigrationTasks extends BaseMigrationTasks<VersionEnum> {
.addColumn("20230110.2", "UPDATE_TIME")
.nullable()
.type(ColumnTypeEnum.DATE_TIMESTAMP);
Map<DriverTypeEnum, String> updateBatch2JobInstance = new HashMap<>();
updateBatch2JobInstance.put(
DriverTypeEnum.H2_EMBEDDED,
"update BT2_JOB_INSTANCE set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2JobInstance.put(
DriverTypeEnum.MARIADB_10_1,
"update BT2_JOB_INSTANCE set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2JobInstance.put(
DriverTypeEnum.MYSQL_5_7,
"update BT2_JOB_INSTANCE set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2JobInstance.put(
DriverTypeEnum.ORACLE_12C,
"update BT2_JOB_INSTANCE set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2JobInstance.put(
DriverTypeEnum.POSTGRES_9_4,
"update BT2_JOB_INSTANCE set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2JobInstance.put(
DriverTypeEnum.MSSQL_2012,
"update BT2_JOB_INSTANCE set UPDATE_TIME = coalesce(end_time, start_time, create_time, CONVERT(DATETIME,'2023-01-01 00:00:00')) where UPDATE_TIME is null");
version.executeRawSql("20230397.1", updateBatch2JobInstance);
Map<DriverTypeEnum, String> updateBatch2WorkChunk = new HashMap<>();
updateBatch2WorkChunk.put(
DriverTypeEnum.H2_EMBEDDED,
"update bt2_work_chunk set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2WorkChunk.put(
DriverTypeEnum.MARIADB_10_1,
"update bt2_work_chunk set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2WorkChunk.put(
DriverTypeEnum.MYSQL_5_7,
"update bt2_work_chunk set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2WorkChunk.put(
DriverTypeEnum.ORACLE_12C,
"update bt2_work_chunk set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2WorkChunk.put(
DriverTypeEnum.POSTGRES_9_4,
"update bt2_work_chunk set UPDATE_TIME = coalesce(end_time, start_time, create_time, TIMESTAMP '2023-01-01 00:00:00') where UPDATE_TIME is null");
updateBatch2WorkChunk.put(
DriverTypeEnum.MSSQL_2012,
"update bt2_work_chunk set UPDATE_TIME = coalesce(end_time, start_time, create_time, CONVERT(DATETIME,'2023-01-01 00:00:00')) where UPDATE_TIME is null");
version.executeRawSql("20230397.2", updateBatch2WorkChunk);
}
private void init610() {