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hapi-fhir
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Merge branch 'master' into fulltext

This commit is contained in:
jamesagnew 2015-10-06 19:42:05 -04:00
parent 8e8db1801c 9fef4f6bab
commit 3050d4776c
19 changed files with 509 additions and 148 deletions
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8
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/annotation/IdParam.java
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@ -28,5 +28,11 @@ import java.lang.annotation.Target;
@Retention(RetentionPolicy.RUNTIME)
@Target(ElementType.PARAMETER)
public @interface IdParam {
// just a marker
/**
* For {@link Operation extended operations}, any parameter with this value set to <code>true</code>
* (default is false) will also be invoked if the operation is invoked against the resource type.
*/
boolean optional() default false;
}

14
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/client/GenericClient.java
View File

@ -50,11 +50,13 @@ import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.instance.model.api.IPrimitiveType;
import ca.uhn.fhir.context.BaseRuntimeChildDatatypeDefinition;
import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementCompositeDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.context.IRuntimeDatatypeDefinition;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.api.IQueryParameterType;
@ -1496,8 +1498,16 @@ public class GenericClient extends BaseClient implements IGenericClient {
parameterElem.getChildByName("name").getMutator().setValue(parameter, name);
if (theValue instanceof IBaseDatatype) {
String childElementName = "value" + StringUtils.capitalize(myContext.getElementDefinition(theValue.getClass()).getName());
parameterElem.getChildByName(childElementName).getMutator().setValue(parameter, theValue);
BaseRuntimeElementDefinition<?> datatypeDef = myContext.getElementDefinition(theValue.getClass());
if (datatypeDef instanceof IRuntimeDatatypeDefinition) {
Class<? extends IBaseDatatype> profileOf = ((IRuntimeDatatypeDefinition) datatypeDef).getProfileOf();
if (profileOf != null) {
datatypeDef = myContext.getElementDefinition(profileOf);
}
}
String childElementName = "value" + StringUtils.capitalize(datatypeDef.getName());
BaseRuntimeChildDefinition childByName = parameterElem.getChildByName(childElementName);
childByName.getMutator().setValue(parameter, theValue);
} else if (theValue instanceof IBaseResource) {
parameterElem.getChildByName("resource").getMutator().setValue(parameter, theValue);
} else {

33
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/method/OperationMethodBinding.java
View File

@ -22,11 +22,12 @@ package ca.uhn.fhir.rest.method;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import java.lang.annotation.Annotation;
import java.lang.reflect.Method;
import java.lang.reflect.Modifier;
import java.util.ArrayList;
import java.util.Collections;
import java.util.HashMap;
import java.util.LinkedHashMap;
import java.util.List;
import java.util.Map;
@ -43,6 +44,7 @@ import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.api.annotation.Description;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.Operation;
import ca.uhn.fhir.rest.annotation.OperationParam;
import ca.uhn.fhir.rest.api.RequestTypeEnum;
@ -67,6 +69,7 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
private final RestOperationTypeEnum myOtherOperatiopnType;
private List<ReturnType> myReturnParams;
private final ReturnTypeEnum myReturnType;
private boolean myCanOperateAtTypeLevel;
protected OperationMethodBinding(Class<?> theReturnResourceType, Class<? extends IBaseResource> theReturnTypeFromRp, Method theMethod, FhirContext theContext, Object theProvider, boolean theIdempotent, String theOperationName, Class<? extends IBaseResource> theOperationType,
OperationParam[] theReturnParams) {
@ -74,6 +77,16 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
myIdempotent = theIdempotent;
myIdParamIndex = MethodUtil.findIdParameterIndex(theMethod);
if (myIdParamIndex != null) {
for (Annotation next : theMethod.getParameterAnnotations()[myIdParamIndex]) {
if (next instanceof IdParam) {
myCanOperateAtTypeLevel = ((IdParam) next).optional() == true;
}
}
} else {
myCanOperateAtTypeLevel = true;
}
Description description = theMethod.getAnnotation(Description.class);
if (description != null) {
myDescription = description.formalDefinition();
@ -195,12 +208,22 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
return false;
}
boolean requestHasId = theRequest.getId() != null;
if (requestHasId != (myIdParamIndex != null)) {
if (!myName.equals(theRequest.getOperation())) {
return false;
}
boolean requestHasId = theRequest.getId() != null;
if (requestHasId) {
if (isCanOperateAtInstanceLevel() == false) {
return false;
}
} else {
if (myCanOperateAtTypeLevel == false) {
return false;
}
}
return myName.equals(theRequest.getOperation());
return true;
}
@Override
@ -289,7 +312,7 @@ public class OperationMethodBinding extends BaseResourceReturningMethodBinding {
FhirTerser t = theContext.newTerser();
List<Object> parameters = t.getValues(theInput, "Parameters.parameter");
Map<String, List<String>> params = new HashMap<String, List<String>>();
Map<String, List<String>> params = new LinkedHashMap<String, List<String>>();
for (Object nextParameter : parameters) {
IPrimitiveType<?> nextNameDt = (IPrimitiveType<?>) t.getSingleValueOrNull((IBase) nextParameter, "name");
if (nextNameDt == null || nextNameDt.isEmpty()) {

16
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/BaseHapiFhirResourceDao.java
View File

@ -162,7 +162,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
private Class<T> myResourceType;
private String mySecondaryPrimaryKeyParamName;
@Autowired
@Autowired()
private ISearchResultDao mySearchResultDao;
private Set<Long> addPredicateComposite(RuntimeSearchParam theParamDef, Set<Long> thePids, List<? extends IQueryParameterType> theNextAnd) {
@ -1784,11 +1784,11 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
List<ResourceLink> results = q.getResultList();
for (ResourceLink resourceLink : results) {
if (theReverseMode) {
if (theEverythingModeEnum.isEncounter()) {
if (resourceLink.getSourcePath().equals("Encounter.subject") || resourceLink.getSourcePath().equals("Encounter.patient")) {
nextRoundOmit.add(resourceLink.getSourceResourcePid());
}
}
// if (theEverythingModeEnum.isEncounter()) {
// if (resourceLink.getSourcePath().equals("Encounter.subject") || resourceLink.getSourcePath().equals("Encounter.patient")) {
// nextRoundOmit.add(resourceLink.getSourceResourcePid());
// }
// }
pidsToInclude.add(resourceLink.getSourceResourcePid());
} else {
pidsToInclude.add(resourceLink.getTargetResourcePid());
@ -2154,8 +2154,8 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
CriteriaQuery<Tuple> cq = builder.createTupleQuery();
Root<ResourceTable> from = cq.from(ResourceTable.class);
List<Predicate> predicates = new ArrayList<Predicate>();
if (theParams.get(BaseResource.RES_ID) != null) {
StringParam idParm = (StringParam) theParams.get(BaseResource.RES_ID).get(0).get(0);
if (theParams.get(BaseResource.SP_RES_ID) != null) {
StringParam idParm = (StringParam) theParams.get(BaseResource.SP_RES_ID).get(0).get(0);
predicates.add(builder.equal(from.get("myId"), idParm.getValue()));
}
predicates.add(builder.equal(from.get("myResourceType"), myResourceName));

20
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/data/IResourceTableDao.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.dao.data;
/*
* #%L
* HAPI FHIR JPA Server
* %%
* Copyright (C) 2014 - 2015 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import org.springframework.data.jpa.repository.JpaRepository;
import ca.uhn.fhir.jpa.entity.ResourceTable;

20
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/data/ISearchResultDao.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.dao.data;
/*
* #%L
* HAPI FHIR JPA Server
* %%
* Copyright (C) 2014 - 2015 University Health Network
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import org.springframework.data.jpa.repository.JpaRepository;
import ca.uhn.fhir.jpa.entity.SearchResult;

2
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/ResourceLink.java
View File

@ -37,8 +37,6 @@ import org.apache.commons.lang3.Validate;
import org.apache.commons.lang3.builder.EqualsBuilder;
import org.apache.commons.lang3.builder.HashCodeBuilder;
import com.phloc.commons.annotations.ContainsSoftMigration;
@Entity
@Table(name = "HFJ_RES_LINK" , indexes= {
@Index(name="IDX_RL_TPATHRES", columnList= "SRC_PATH,TARGET_RESOURCE_ID"),

92
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/BaseJpaResourceProviderValueSetDstu2.java
View File

@ -24,6 +24,8 @@ import static org.apache.commons.lang3.StringUtils.isNotBlank;
import javax.servlet.http.HttpServletRequest;
import org.apache.commons.lang3.BooleanUtils;
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet;
import ca.uhn.fhir.jpa.dao.IFhirResourceDaoValueSet.ValidateCodeResult;
import ca.uhn.fhir.model.dstu2.composite.CodeableConceptDt;
@ -38,65 +40,63 @@ import ca.uhn.fhir.model.primitive.UriDt;
import ca.uhn.fhir.rest.annotation.IdParam;
import ca.uhn.fhir.rest.annotation.Operation;
import ca.uhn.fhir.rest.annotation.OperationParam;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
public class BaseJpaResourceProviderValueSetDstu2 extends JpaResourceProviderDstu2<ValueSet> {
//@formatter:off
@Operation(name = "$expand", idempotent = true)
public ValueSet everything(
public ValueSet expand(
HttpServletRequest theServletRequest,
@IdParam IdDt theId,
@IdParam(optional=true) IdDt theId,
@OperationParam(name="valueSet", min=0, max=1) ValueSet theValueSet,
@OperationParam(name="identifier", min=0, max=1) UriDt theIdentifier,
@OperationParam(name = "filter", min=0, max=1) StringDt theFilter) {
//@formatter:on
boolean haveId = theId != null && theId.hasIdPart();
boolean haveIdentifier = theIdentifier != null && isNotBlank(theIdentifier.getValue());
boolean haveValueSet = theValueSet != null && theValueSet.isEmpty() == false;
if (!haveId && !haveIdentifier && !haveValueSet) {
throw new InvalidRequestException("$expand operation at the type level (no ID specified) requires an identifier or a valueSet as a part of the request");
}
if (moreThanOneTrue(haveId, haveIdentifier, haveValueSet)) {
throw new InvalidRequestException("$expand must EITHER be invoked at the type level, or have an identifier specified, or have a ValueSet specified. Can not combine these options.");
}
startRequest(theServletRequest);
try {
IFhirResourceDaoValueSet<ValueSet> dao = (IFhirResourceDaoValueSet<ValueSet>) getDao();
return dao.expand(theId, toFilterString(theFilter));
if (haveId) {
return dao.expand(theId, toFilterString(theFilter));
} else if (haveIdentifier) {
return dao.expandByIdentifier(theIdentifier.getValue(), toFilterString(theFilter));
} else {
return dao.expand(theValueSet, toFilterString(theFilter));
}
} finally {
endRequest(theServletRequest);
}
}
//@formatter:off
@Operation(name = "$expand", idempotent = true)
public ValueSet everything(
HttpServletRequest theServletRequest,
@OperationParam(name="identifier", min=1, max=1) UriDt theIdentifier,
@OperationParam(name = "filter", min=0, max=1) StringDt theFilter) {
//@formatter:on
startRequest(theServletRequest);
try {
IFhirResourceDaoValueSet<ValueSet> dao = (IFhirResourceDaoValueSet<ValueSet>) getDao();
return dao.expandByIdentifier(theIdentifier.getValue(), toFilterString(theFilter));
} finally {
endRequest(theServletRequest);
private static boolean moreThanOneTrue(boolean... theBooleans) {
boolean haveOne = false;
for (boolean next : theBooleans) {
if (next) {
if (haveOne) {
return true;
} else {
haveOne = true;
}
}
}
return false;
}
//@formatter:off
@Operation(name = "$expand", idempotent = true)
public ValueSet everything(
HttpServletRequest theServletRequest,
@OperationParam(name="valueSet", min=1, max=1) ValueSet theValueSet,
@OperationParam(name = "filter", min=0, max=1) StringDt theFilter) {
//@formatter:on
startRequest(theServletRequest);
try {
IFhirResourceDaoValueSet<ValueSet> dao = (IFhirResourceDaoValueSet<ValueSet>) getDao();
return dao.expand(theValueSet, toFilterString(theFilter));
} finally {
endRequest(theServletRequest);
}
}
private String toFilterString(StringDt theFilter) {
return theFilter != null ? theFilter.getValue() : null;
@ -108,15 +108,15 @@ public class BaseJpaResourceProviderValueSetDstu2 extends JpaResourceProviderDst
@OperationParam(name="message", type=StringDt.class),
@OperationParam(name="display", type=StringDt.class)
})
public Parameters everything(
public Parameters validateCode(
HttpServletRequest theServletRequest,
@IdParam IdDt theId,
@OperationParam(name="identifier") UriDt theValueSetIdentifier,
@OperationParam(name="code") CodeDt theCode,
@OperationParam(name="system") UriDt theSystem,
@OperationParam(name="display") StringDt theDisplay,
@OperationParam(name="coding") CodingDt theCoding,
@OperationParam(name="codeableConcept") CodeableConceptDt theCodeableConcept
@IdParam(optional=true) IdDt theId,
@OperationParam(name="identifier", min=0, max=1) UriDt theValueSetIdentifier,
@OperationParam(name="code", min=0, max=1) CodeDt theCode,
@OperationParam(name="system", min=0, max=1) UriDt theSystem,
@OperationParam(name="display", min=0, max=1) StringDt theDisplay,
@OperationParam(name="coding", min=0, max=1) CodingDt theCoding,
@OperationParam(name="codeableConcept", min=0, max=1) CodeableConceptDt theCodeableConcept
) {
//@formatter:on

2
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/dao/FhirSystemDaoDstu2Test.java
View File

@ -678,6 +678,8 @@ public class FhirSystemDaoDstu2Test extends BaseJpaDstu2Test {
@Test
public void testTransactionDeleteMatchUrlWithTwoMatch() {
myDaoConfig.setAllowMultipleDelete(false);
String methodName = "testTransactionDeleteMatchUrlWithTwoMatch";
Patient p = new Patient();

2
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/ResourceProviderDstu2Test.java
View File

@ -771,6 +771,8 @@ public class ResourceProviderDstu2Test extends BaseResourceProviderDstu2Test {
obs.getEncounter().setReference(encId);
IIdType obsId = ourClient.create().resource(obs).execute().getId().toUnqualifiedVersionless();
ourLog.info("IDs: EncU:" + encUId.getIdPart() + " Enc:" + encId.getIdPart() + " " + patientId.toUnqualifiedVersionless());
Parameters output = ourClient.operation().onInstance(encId).named("everything").withNoParameters(Parameters.class).execute();
ca.uhn.fhir.model.dstu2.resource.Bundle b = (ca.uhn.fhir.model.dstu2.resource.Bundle) output.getParameterFirstRep().getResource();
List<IIdType> ids = toUnqualifiedVersionlessIds(b);

78
hapi-fhir-jpaserver-base/src/test/java/ca/uhn/fhir/jpa/provider/ResourceProviderDstu2ValueSetTest.java
View File

@ -3,7 +3,9 @@ package ca.uhn.fhir.jpa.provider;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.not;
import static org.hamcrest.Matchers.stringContainsInOrder;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.fail;
import java.io.IOException;
@ -14,8 +16,11 @@ import org.springframework.transaction.annotation.Transactional;
import ca.uhn.fhir.model.dstu2.resource.Parameters;
import ca.uhn.fhir.model.dstu2.resource.ValueSet;
import ca.uhn.fhir.model.primitive.BooleanDt;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.model.primitive.StringDt;
import ca.uhn.fhir.model.primitive.UriDt;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
public class ResourceProviderDstu2ValueSetTest extends BaseResourceProviderDstu2Test {
@ -30,6 +35,26 @@ public class ResourceProviderDstu2ValueSetTest extends BaseResourceProviderDstu2
myExtensionalVsId = myValueSetDao.create(upload).getId().toUnqualifiedVersionless();
}
@Test
public void testValidateCodeOperationByCodeAndSystemBad() {
//@formatter:off
Parameters respParam = ourClient
.operation()
.onInstance(myExtensionalVsId)
.named("validate-code")
.withParameter(Parameters.class, "code", new CodeDt("8495-4"))
.andParameter("system", new UriDt("http://loinc.org"))
.execute();
//@formatter:on
String resp = myFhirCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(respParam);
ourLog.info(resp);
assertEquals(new BooleanDt(true), respParam.getParameter().get(0).getValue());
}
@Test
public void testExpandById() throws IOException {
//@formatter:off
@ -112,7 +137,7 @@ public class ResourceProviderDstu2ValueSetTest extends BaseResourceProviderDstu2
//@formatter:off
Parameters respParam = ourClient
.operation()
.onInstance(myExtensionalVsId)
.onType(ValueSet.class)
.named("expand")
.withParameter(Parameters.class, "identifier", new UriDt("http://www.healthintersections.com.au/fhir/ValueSet/extensional-case-2"))
.andParameter("filter", new StringDt("11378"))
@ -138,7 +163,7 @@ public class ResourceProviderDstu2ValueSetTest extends BaseResourceProviderDstu2
//@formatter:off
Parameters respParam = ourClient
.operation()
.onInstance(myExtensionalVsId)
.onType(ValueSet.class)
.named("expand")
.withParameter(Parameters.class, "valueSet", toExpand)
.andParameter("filter", new StringDt("11378"))
@ -157,5 +182,54 @@ public class ResourceProviderDstu2ValueSetTest extends BaseResourceProviderDstu2
assertThat(resp, not(containsString("<code value=\"8450-9\"/>")));
}
@Test
public void testExpandInvalidParams() throws IOException {
//@formatter:off
try {
ourClient
.operation()
.onType(ValueSet.class)
.named("expand")
.withNoParameters(Parameters.class)
.execute();
fail();
} catch (InvalidRequestException e) {
assertEquals("HTTP 400 Bad Request: $expand operation at the type level (no ID specified) requires an identifier or a valueSet as a part of the request", e.getMessage());
}
//@formatter:on
//@formatter:off
try {
ValueSet toExpand = loadResourceFromClasspath(ValueSet.class, "/extensional-case-2.xml");
ourClient
.operation()
.onType(ValueSet.class)
.named("expand")
.withParameter(Parameters.class, "valueSet", toExpand)
.andParameter("identifier", new UriDt("http://www.healthintersections.com.au/fhir/ValueSet/extensional-case-2"))
.execute();
fail();
} catch (InvalidRequestException e) {
assertEquals("HTTP 400 Bad Request: $expand must EITHER be invoked at the type level, or have an identifier specified, or have a ValueSet specified. Can not combine these options.", e.getMessage());
}
//@formatter:on
//@formatter:off
try {
ValueSet toExpand = loadResourceFromClasspath(ValueSet.class, "/extensional-case-2.xml");
ourClient
.operation()
.onInstance(myExtensionalVsId)
.named("expand")
.withParameter(Parameters.class, "valueSet", toExpand)
.andParameter("identifier", new UriDt("http://www.healthintersections.com.au/fhir/ValueSet/extensional-case-2"))
.execute();
fail();
} catch (InvalidRequestException e) {
assertEquals("HTTP 400 Bad Request: $expand must EITHER be invoked at the type level, or have an identifier specified, or have a ValueSet specified. Can not combine these options.", e.getMessage());
}
//@formatter:on
}
}

2
hapi-fhir-jpaserver-example/src/main/resources/META-INF/fhirtest_persistence.xml
View File

@ -22,6 +22,8 @@
<class>ca.uhn.fhir.jpa.entity.ResourceTag</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionTable</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionFlaggedResource</class>
<class>ca.uhn.fhir.jpa.entity.Search</class>
<class>ca.uhn.fhir.jpa.entity.SearchResult</class>
<class>ca.uhn.fhir.jpa.entity.TagDefinition</class>
<exclude-unlisted-classes>true</exclude-unlisted-classes>

2
hapi-fhir-jpaserver-uhnfhirtest/src/main/resources/META-INF/fhirtest_persistence.xml
View File

@ -23,6 +23,8 @@
<class>ca.uhn.fhir.jpa.entity.SubscriptionTable</class>
<class>ca.uhn.fhir.jpa.entity.SubscriptionFlaggedResource</class>
<class>ca.uhn.fhir.jpa.entity.TagDefinition</class>
<class>ca.uhn.fhir.jpa.entity.Search</class>
<class>ca.uhn.fhir.jpa.entity.SearchResult</class>
<exclude-unlisted-classes>true</exclude-unlisted-classes>
<properties>

217
hapi-fhir-structures-dstu2/src/test/java/ca/uhn/fhir/rest/client/GenericClientDstu2Test.java
View File

@ -22,6 +22,7 @@ import org.apache.http.Header;
import org.apache.http.HttpEntityEnclosingRequest;
import org.apache.http.HttpResponse;
import org.apache.http.ProtocolVersion;
import org.apache.http.client.ClientProtocolException;
import org.apache.http.client.HttpClient;
import org.apache.http.client.methods.HttpEntityEnclosingRequestBase;
import org.apache.http.client.methods.HttpUriRequest;
@ -52,6 +53,7 @@ import ca.uhn.fhir.model.dstu2.resource.Observation;
import ca.uhn.fhir.model.dstu2.resource.OperationOutcome;
import ca.uhn.fhir.model.dstu2.resource.Parameters;
import ca.uhn.fhir.model.dstu2.resource.Patient;
import ca.uhn.fhir.model.primitive.CodeDt;
import ca.uhn.fhir.model.primitive.DateDt;
import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.model.primitive.InstantDt;
@ -70,6 +72,8 @@ import ca.uhn.fhir.rest.server.EncodingEnum;
public class GenericClientDstu2Test {
private static FhirContext ourCtx;
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(GenericClientDstu2Test.class);
private HttpClient myHttpClient;
private HttpResponse myHttpResponse;
@ -348,7 +352,7 @@ public class GenericClientDstu2Test {
assertEquals(EncodingEnum.XML.getResourceContentType() + Constants.HEADER_SUFFIX_CT_UTF_8, capt.getAllValues().get(idx).getFirstHeader(Constants.HEADER_CONTENT_TYPE).getValue());
assertThat(extractBody(capt, idx), containsString("<family value=\"FOOFAMILY\"/>"));
assertEquals("http://example.com/fhir/Patient", capt.getAllValues().get(idx).getURI().toString());
assertEquals("http://example.com/fhir/Patient?name=http://foo%7Cbar", capt.getAllValues().get(idx).getFirstHeader(Constants.HEADER_IF_NONE_EXIST).getValue());
assertEquals("http://example.com/fhir/Patient?name=http%3A//foo%7Cbar", capt.getAllValues().get(idx).getFirstHeader(Constants.HEADER_IF_NONE_EXIST).getValue());
assertEquals("POST", capt.getAllValues().get(idx).getRequestLine().getMethod());
idx++;
@ -1089,6 +1093,60 @@ public class GenericClientDstu2Test {
//@formatter:on
}
@Test
public void testOperationWithProfiledDatatypeParam() throws IOException, Exception {
IParser p = ourCtx.newXmlParser();
Parameters outParams = new Parameters();
outParams.addParameter().setValue(new StringDt("STRINGVALOUT1"));
outParams.addParameter().setValue(new StringDt("STRINGVALOUT2"));
final String respString = p.encodeResourceToString(outParams);
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
when(myHttpResponse.getStatusLine()).thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
when(myHttpResponse.getEntity().getContentType()).thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
when(myHttpResponse.getEntity().getContent()).thenAnswer(new Answer<ReaderInputStream>() {
@Override
public ReaderInputStream answer(InvocationOnMock theInvocation) throws Throwable {
return new ReaderInputStream(new StringReader(respString), Charset.forName("UTF-8"));
}
});
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
int idx = 0;
//@formatter:off
client
.operation()
.onInstance(new IdDt("http://foo/Patient/1"))
.named("validate-code")
.withParameter(Parameters.class, "code", new CodeDt("8495-4"))
.andParameter("system", new UriDt("http://loinc.org"))
.useHttpGet()
.execute();
//@formatter:off
assertEquals("http://example.com/fhir/Patient/1/$validate-code?code=8495-4&system=http%3A%2F%2Floinc.org", capt.getAllValues().get(idx).getURI().toASCIIString());
//@formatter:off
idx++;
client
.operation()
.onInstance(new IdDt("http://foo/Patient/1"))
.named("validate-code")
.withParameter(Parameters.class, "code", new CodeDt("8495-4"))
.andParameter("system", new UriDt("http://loinc.org"))
.execute();
//@formatter:off
assertEquals("http://example.com/fhir/Patient/1/$validate-code", capt.getAllValues().get(idx).getURI().toASCIIString());
ourLog.info(extractBody(capt, idx));
assertEquals("<Parameters xmlns=\"http://hl7.org/fhir\"><parameter><name value=\"code\"/><valueString value=\"8495-4\"/></parameter><parameter><name value=\"system\"/><valueUri value=\"http://loinc.org\"/></parameter></Parameters>",extractBody(capt, idx));
}
@Test
public void testOperationWithListOfParameterResponse() throws Exception {
IParser p = ourCtx.newXmlParser();
@ -1556,6 +1614,85 @@ public class GenericClientDstu2Test {
}
@Test
public void testSearchByUrl() throws Exception {
final String msg = getPatientFeedWithOneResult();
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
when(myHttpResponse.getStatusLine()).thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
when(myHttpResponse.getEntity().getContentType()).thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
when(myHttpResponse.getEntity().getContent()).thenAnswer(new Answer<InputStream>() {
@Override
public InputStream answer(InvocationOnMock theInvocation) throws Throwable {
return new ReaderInputStream(new StringReader(msg), Charset.forName("UTF-8"));
}
});
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
int idx = 0;
//@formatter:off
ca.uhn.fhir.model.dstu2.resource.Bundle response = client.search()
.byUrl("http://foo?name=http://foo|bar")
.encodedJson()
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://foo?name=http%3A//foo%7Cbar&_format=json", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
//@formatter:off
response = client.search()
.byUrl("Patient?name=http://foo|bar")
.encodedJson()
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?name=http%3A//foo%7Cbar&_format=json", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
//@formatter:off
response = client.search()
.byUrl("/Patient?name=http://foo|bar")
.encodedJson()
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?name=http%3A//foo%7Cbar&_format=json", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
//@formatter:off
response = client.search()
.byUrl("Patient")
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
//@formatter:off
response = client.search()
.byUrl("Patient?")
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
try {
client.search().byUrl("foo/bar?test=1");
} catch (IllegalArgumentException e) {
assertEquals("Search URL must be either a complete URL starting with http: or https:, or a relative FHIR URL in the form [ResourceType]?[Params]", e.getMessage());
}
}
/**
* See #191
*/
@ -1692,84 +1829,6 @@ public class GenericClientDstu2Test {
}
@Test
public void testSearchByUrl() throws Exception {
final String msg = getPatientFeedWithOneResult();
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
when(myHttpResponse.getStatusLine()).thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
when(myHttpResponse.getEntity().getContentType()).thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_XML + "; charset=UTF-8"));
when(myHttpResponse.getEntity().getContent()).thenAnswer(new Answer<InputStream>() {
@Override
public InputStream answer(InvocationOnMock theInvocation) throws Throwable {
return new ReaderInputStream(new StringReader(msg), Charset.forName("UTF-8"));
}});
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
int idx = 0;
//@formatter:off
ca.uhn.fhir.model.dstu2.resource.Bundle response = client.search()
.byUrl("http://foo?name=http://foo|bar")
.encodedJson()
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://foo?name=http%3A//foo%7Cbar&_format=json", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
//@formatter:off
response = client.search()
.byUrl("Patient?name=http://foo|bar")
.encodedJson()
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?name=http%3A//foo%7Cbar&_format=json", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
//@formatter:off
response = client.search()
.byUrl("/Patient?name=http://foo|bar")
.encodedJson()
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?name=http%3A//foo%7Cbar&_format=json", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
//@formatter:off
response = client.search()
.byUrl("Patient")
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
//@formatter:off
response = client.search()
.byUrl("Patient?")
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
.execute();
//@formatter:on
assertEquals("http://example.com/fhir/Patient?", capt.getAllValues().get(idx).getURI().toString());
assertNotNull(response);
idx++;
try {
client.search().byUrl("foo/bar?test=1");
} catch (IllegalArgumentException e) {
assertEquals("Search URL must be either a complete URL starting with http: or https:, or a relative FHIR URL in the form [ResourceType]?[Params]", e.getMessage());
}
}
@Test
public void testSearchWithSummaryParam() throws Exception {
String msg = "{\"resourceType\":\"Bundle\",\"id\":null,\"base\":\"http://localhost:57931/fhir/contextDev\",\"total\":1,\"link\":[{\"relation\":\"self\",\"url\":\"http://localhost:57931/fhir/contextDev/Patient?identifier=urn%3AMultiFhirVersionTest%7CtestSubmitPatient01&_format=json\"}],\"entry\":[{\"resource\":{\"resourceType\":\"Patient\",\"id\":\"1\",\"meta\":{\"versionId\":\"1\",\"lastUpdated\":\"2014-12-20T18:41:29.706-05:00\"},\"identifier\":[{\"system\":\"urn:MultiFhirVersionTest\",\"value\":\"testSubmitPatient01\"}]}}]}";

83
hapi-fhir-structures-dstu2/src/test/java/ca/uhn/fhir/rest/server/OperationServerTest.java
View File

@ -274,6 +274,56 @@ public class OperationServerTest {
assertEquals("RET1", resp.getParameter().get(0).getName());
}
@Test
public void testOperationOnInstanceAndType_Instance() throws Exception {
Parameters p = new Parameters();
p.addParameter().setName("PARAM1").setValue(new StringDt("PARAM1val"));
p.addParameter().setName("PARAM2").setResource(new Patient().setActive(true));
String inParamsStr = ourCtx.newXmlParser().encodeResourceToString(p);
HttpPost httpPost = new HttpPost("http://localhost:" + ourPort + "/Patient/123/$OP_INSTANCE_OR_TYPE");
httpPost.setEntity(new StringEntity(inParamsStr, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
HttpResponse status = ourClient.execute(httpPost);
assertEquals(200, status.getStatusLine().getStatusCode());
String response = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals("PARAM1val", ourLastParam1.getValue());
assertEquals(true, ourLastParam2.getActive().booleanValue());
assertEquals("123", ourLastId.getIdPart());
assertEquals("$OP_INSTANCE_OR_TYPE", ourLastMethod);
Parameters resp = ourCtx.newXmlParser().parseResource(Parameters.class, response);
assertEquals("RET1", resp.getParameter().get(0).getName());
}
@Test
public void testOperationOnInstanceAndType_Type() throws Exception {
Parameters p = new Parameters();
p.addParameter().setName("PARAM1").setValue(new StringDt("PARAM1val"));
p.addParameter().setName("PARAM2").setResource(new Patient().setActive(true));
String inParamsStr = ourCtx.newXmlParser().encodeResourceToString(p);
HttpPost httpPost = new HttpPost("http://localhost:" + ourPort + "/Patient/$OP_INSTANCE_OR_TYPE");
httpPost.setEntity(new StringEntity(inParamsStr, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
CloseableHttpResponse status = ourClient.execute(httpPost);
assertEquals(200, status.getStatusLine().getStatusCode());
String response = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
assertEquals("PARAM1val", ourLastParam1.getValue());
assertEquals(true, ourLastParam2.getActive().booleanValue());
assertEquals(null, ourLastId);
assertEquals("$OP_INSTANCE_OR_TYPE", ourLastMethod);
Parameters resp = ourCtx.newXmlParser().parseResource(Parameters.class, response);
assertEquals("RET1", resp.getParameter().get(0).getName());
}
@Test
public void testOperationOnInstance() throws Exception {
Parameters p = new Parameters();
@ -296,6 +346,20 @@ public class OperationServerTest {
Parameters resp = ourCtx.newXmlParser().parseResource(Parameters.class, response);
assertEquals("RET1", resp.getParameter().get(0).getName());
/*
* Against type should fail
*/
httpPost = new HttpPost("http://localhost:" + ourPort + "/Patient/$OP_INSTANCE");
httpPost.setEntity(new StringEntity(inParamsStr, ContentType.create(Constants.CT_FHIR_XML, "UTF-8")));
status = ourClient.execute(httpPost);
response = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(response);
assertEquals(400, status.getStatusLine().getStatusCode());
}
@Test
@ -611,6 +675,25 @@ public class OperationServerTest {
return retVal;
}
//@formatter:off
@Operation(name="$OP_INSTANCE_OR_TYPE")
public Parameters opInstanceOrType(
@IdParam(optional=true) IdDt theId,
@OperationParam(name="PARAM1") StringDt theParam1,
@OperationParam(name="PARAM2") Patient theParam2
) {
//@formatter:on
ourLastMethod = "$OP_INSTANCE_OR_TYPE";
ourLastId = theId;
ourLastParam1 = theParam1;
ourLastParam2 = theParam2;
Parameters retVal = new Parameters();
retVal.addParameter().setName("RET1").setValue(new StringDt("RETVAL1"));
return retVal;
}
}
}

54
hapi-fhir-structures-dstu2/src/test/java/ca/uhn/fhir/rest/server/SearchDstu2Test.java
View File

@ -7,13 +7,18 @@ import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertNull;
import static org.junit.Assert.assertThat;
import java.util.ArrayList;
import java.util.Collections;
import java.util.List;
import java.util.concurrent.TimeUnit;
import org.apache.commons.io.IOUtils;
import org.apache.http.HttpResponse;
import org.apache.http.client.methods.CloseableHttpResponse;
import org.apache.http.client.methods.HttpGet;
import org.apache.http.client.methods.HttpPost;
import org.apache.http.entity.ContentType;
import org.apache.http.entity.StringEntity;
import org.apache.http.impl.client.CloseableHttpClient;
import org.apache.http.impl.client.HttpClientBuilder;
import org.apache.http.impl.conn.PoolingHttpClientConnectionManager;
@ -28,6 +33,7 @@ import org.junit.Test;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu2.composite.IdentifierDt;
import ca.uhn.fhir.model.dstu2.resource.Bundle;
import ca.uhn.fhir.model.dstu2.resource.Patient;
import ca.uhn.fhir.model.primitive.InstantDt;
@ -138,6 +144,48 @@ public class SearchDstu2Test {
assertEquals("2002", ourLastDateAndList.getValuesAsQueryTokens().get(0).getValuesAsQueryTokens().get(1).getValueAsString());
}
@Test
public void testSearchByPost() throws Exception {
HttpPost httpGet = new HttpPost("http://localhost:" + ourPort + "/Patient/_search");
StringEntity entity = new StringEntity("searchDateAndList=2001,2002&searchDateAndList=2003,2004", ContentType.APPLICATION_FORM_URLENCODED);
httpGet.setEntity(entity);
HttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals("searchDateAndList", ourLastMethod);
assertEquals(2, ourLastDateAndList.getValuesAsQueryTokens().size());
assertEquals(2, ourLastDateAndList.getValuesAsQueryTokens().get(0).getValuesAsQueryTokens().size());
assertEquals(2, ourLastDateAndList.getValuesAsQueryTokens().get(1).getValuesAsQueryTokens().size());
assertEquals("2001", ourLastDateAndList.getValuesAsQueryTokens().get(0).getValuesAsQueryTokens().get(0).getValueAsString());
assertEquals("2002", ourLastDateAndList.getValuesAsQueryTokens().get(0).getValuesAsQueryTokens().get(1).getValueAsString());
assertThat(responseContent, containsString("SYSTEM"));
}
@Test
public void testSearchByPostWithBodyAndUrlParams() throws Exception {
HttpPost httpGet = new HttpPost("http://localhost:" + ourPort + "/Patient/_search?_format=json");
StringEntity entity = new StringEntity("searchDateAndList=2001,2002&searchDateAndList=2003,2004", ContentType.APPLICATION_FORM_URLENCODED);
httpGet.setEntity(entity);
CloseableHttpResponse status = ourClient.execute(httpGet);
String responseContent = IOUtils.toString(status.getEntity().getContent());
IOUtils.closeQuietly(status.getEntity().getContent());
ourLog.info(responseContent);
assertEquals("searchDateAndList", ourLastMethod);
assertEquals(2, ourLastDateAndList.getValuesAsQueryTokens().size());
assertEquals(2, ourLastDateAndList.getValuesAsQueryTokens().get(0).getValuesAsQueryTokens().size());
assertEquals(2, ourLastDateAndList.getValuesAsQueryTokens().get(1).getValuesAsQueryTokens().size());
assertEquals("2001", ourLastDateAndList.getValuesAsQueryTokens().get(0).getValuesAsQueryTokens().get(0).getValueAsString());
assertEquals("2002", ourLastDateAndList.getValuesAsQueryTokens().get(0).getValuesAsQueryTokens().get(1).getValueAsString());
assertThat(responseContent, containsString(":\"SYSTEM\""));
}
@Test
public void testSearchBlacklist01Failing() throws Exception {
HttpGet httpGet = new HttpGet("http://localhost:" + ourPort + "/Patient?_query=searchBlacklist01&ref.black1=value");
@ -292,7 +340,11 @@ public class SearchDstu2Test {
@RequiredParam(name = "searchDateAndList") DateAndListParam theParam) {
ourLastMethod = "searchDateAndList";
ourLastDateAndList = theParam;
return Collections.emptyList();
ArrayList<Patient> retVal = new ArrayList<Patient>();
Patient patient = new Patient();
patient.setId("1");
retVal.add(patient.addIdentifier(new IdentifierDt("SYSTEM", "CODE")));
return retVal;
}
//@formatter:on

3
hapi-tinder-plugin/src/main/resources/vm/jpa_spring_beans.vm
View File

@ -23,9 +23,10 @@
<property name="dao" ref="mySystemDao${versionCapitalized}"/>
</bean>
<jpa:repositories base-package="ca.uhn.fhir.jpa.dao.data" />
#if ( ${versionCapitalized} == 'Dstu2' )
<bean id="myFhirContextDstu2Hl7Org" class="ca.uhn.fhir.context.FhirContext" factory-method="forDstu2Hl7Org"/>
<jpa:repositories base-package="ca.uhn.fhir.jpa.dao.data" />
<task:annotation-driven executor="myExecutor" scheduler="myScheduler"/>
<task:executor id="myExecutor" pool-size="5"/>

2
hapi-tinder-plugin/src/main/resources/vm/valueset.vm
View File

@ -69,7 +69,7 @@ public enum ${valueSet.className} {
/**
* Returns the enumerated value associated with this code
*/
public ${valueSet.className} forCode(String theCode) {
public static ${valueSet.className} forCode(String theCode) {
${valueSet.className} retVal = CODE_TO_ENUM.get(theCode);
return retVal;
}

7
src/changes/changes.xml
View File

@ -155,6 +155,13 @@
Refactor JPA $everything operations so that
they perform better
</action>
<action type="add">
Server operation methods can now declare the
ID optional, via
@IdParam(optional=true)
meaning that the same operation can also be invoked
at the type level.
</action>
</release>
<release version="1.2" date="2015-09-18">
<action type="add">