Bump RestEasy to 5.0.2 (#3329)
* Bump deps * Test fix * Add test logging * Add test logging * Add logging
This commit is contained in:
parent
a11d72ba51
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31bb1d9e9a
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@ -79,11 +79,6 @@
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<artifactId>jetty-servlet</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.jboss.resteasy</groupId>
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<artifactId>resteasy-jaxrs</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.jboss.resteasy</groupId>
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<artifactId>resteasy-client</artifactId>
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@ -25,6 +25,7 @@
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<li>Jetty Server (CLI): 9.4.43.v20210629 -> 9.4.44.v20210927</li>
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<li>Spring Boot (Boot): 2.5.0 -> 2.6.2</li>
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<li>Swagger UI (OpenAPI): 3.46.0 -> 4.1.3</li>
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<li>Resteasy (JAX-RS): 4.0.0.Beta3 -> 5.0.2.Final</li>
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</ul>
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"
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@ -72,11 +72,6 @@
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<version>${project.version}</version>
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</dependency>
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<dependency>
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<groupId>javax.ws.rs</groupId>
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<artifactId>javax.ws.rs-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>javax.ejb</groupId>
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<artifactId>ejb-api</artifactId>
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@ -87,6 +82,11 @@
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<artifactId>javax.servlet-api</artifactId>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>org.jboss.spec.javax.ws.rs</groupId>
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<artifactId>jboss-jaxrs-api_2.1_spec</artifactId>
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<scope>provided</scope>
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</dependency>
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<dependency>
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<groupId>javax.annotation</groupId>
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@ -122,11 +122,6 @@
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</dependency>
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<dependency>
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<groupId>org.jboss.resteasy</groupId>
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<artifactId>resteasy-jaxrs</artifactId>
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<scope>test</scope>
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</dependency>
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<dependency>
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<groupId>org.jboss.resteasy</groupId>
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<artifactId>resteasy-client</artifactId>
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@ -162,7 +157,7 @@
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<scope>test</scope>
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</dependency>
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</dependencies>
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</dependencies>
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<reporting>
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<plugins>
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@ -20,27 +20,31 @@ package ca.uhn.fhir.jaxrs.client;
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* #L%
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*/
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import java.util.List;
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import java.util.Map;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.rest.api.Constants;
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import ca.uhn.fhir.rest.api.EncodingEnum;
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import ca.uhn.fhir.rest.api.RequestTypeEnum;
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import ca.uhn.fhir.rest.client.api.Header;
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import ca.uhn.fhir.rest.client.api.HttpClientUtil;
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import ca.uhn.fhir.rest.client.api.IHttpClient;
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import ca.uhn.fhir.rest.client.api.IHttpRequest;
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import ca.uhn.fhir.rest.client.impl.BaseHttpClientInvocation;
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import ca.uhn.fhir.rest.client.method.MethodUtil;
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import javax.ws.rs.client.Client;
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import javax.ws.rs.client.Entity;
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import javax.ws.rs.client.Invocation.Builder;
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import javax.ws.rs.core.*;
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import javax.ws.rs.core.Form;
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import javax.ws.rs.core.MultivaluedHashMap;
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import javax.ws.rs.core.MultivaluedMap;
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import org.hl7.fhir.instance.model.api.IBaseBinary;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.rest.api.*;
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import ca.uhn.fhir.rest.client.api.*;
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import ca.uhn.fhir.rest.client.impl.BaseHttpClientInvocation;
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import ca.uhn.fhir.rest.client.method.MethodUtil;
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import ca.uhn.fhir.rest.server.RestfulServerUtils;
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import java.util.List;
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import java.util.Map;
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/**
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* A Http Request based on JaxRs. This is an adapter around the class
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* {@link javax.ws.rs.client.Client Client}
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*
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*
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* @author Peter Van Houte | peter.vanhoute@agfa.com | Agfa Healthcare
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*/
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public class JaxRsHttpClient implements IHttpClient {
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@ -52,8 +56,8 @@ public class JaxRsHttpClient implements IHttpClient {
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private String myIfNoneExistString;
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private RequestTypeEnum myRequestType;
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public JaxRsHttpClient(Client theClient, StringBuilder theUrl, Map<String, List<String>> theIfNoneExistParams, String theIfNoneExistString,
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RequestTypeEnum theRequestType, List<Header> theHeaders) {
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public JaxRsHttpClient(Client theClient, StringBuilder theUrl, Map<String, List<String>> theIfNoneExistParams, String theIfNoneExistString,
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RequestTypeEnum theRequestType, List<Header> theHeaders) {
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this.myClient = theClient;
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this.myUrl = theUrl;
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this.myIfNoneExistParams = theIfNoneExistParams;
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@ -82,7 +86,7 @@ public class JaxRsHttpClient implements IHttpClient {
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}
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Entity<Form> entity = Entity.form(map);
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JaxRsHttpRequest retVal = createHttpRequest(entity);
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addHeadersToRequest(retVal, theEncoding, theContext);
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addHeadersToRequest(retVal, theEncoding, theContext);
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return retVal;
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}
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@ -110,13 +114,13 @@ public class JaxRsHttpClient implements IHttpClient {
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theHttpRequest.addHeader("User-Agent", HttpClientUtil.createUserAgentString(theContext, "jax-rs"));
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theHttpRequest.addHeader("Accept-Charset", "utf-8");
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Builder request = theHttpRequest.getRequest();
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request.acceptEncoding("gzip");
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MethodUtil.addAcceptHeaderToRequest(theEncoding, theHttpRequest, theContext);
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}
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private JaxRsHttpRequest createHttpRequest(Entity<?> entity) {
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Builder request = myClient.target(myUrl.toString()).request();
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JaxRsHttpRequest result = new JaxRsHttpRequest(request, myRequestType, entity);
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@ -26,6 +26,8 @@ import java.util.List;
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import javax.interceptor.Interceptors;
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import javax.ws.rs.*;
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import javax.ws.rs.Produces;
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import javax.ws.rs.core.MediaType;
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import javax.ws.rs.core.Response;
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@ -20,54 +20,77 @@ package ca.uhn.fhir.jaxrs.server;
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* #L%
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*/
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import java.io.IOException;
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import java.lang.annotation.Annotation;
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import java.lang.reflect.Method;
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import java.lang.reflect.Modifier;
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import java.util.*;
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import java.util.Map.Entry;
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import java.util.concurrent.ConcurrentHashMap;
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import javax.annotation.PostConstruct;
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import javax.ws.rs.*;
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import javax.ws.rs.core.MediaType;
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import javax.ws.rs.core.Response;
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import ca.uhn.fhir.context.ConfigurationException;
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import ca.uhn.fhir.context.FhirContext;
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import ca.uhn.fhir.context.FhirVersionEnum;
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import ca.uhn.fhir.context.RuntimeResourceDefinition;
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import ca.uhn.fhir.jaxrs.server.util.JaxRsRequest.Builder;
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import ca.uhn.fhir.rest.annotation.IdParam;
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import ca.uhn.fhir.rest.api.Constants;
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import ca.uhn.fhir.rest.api.RequestTypeEnum;
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import ca.uhn.fhir.rest.api.RestOperationTypeEnum;
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import ca.uhn.fhir.rest.api.SummaryEnum;
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import ca.uhn.fhir.rest.api.server.IRestfulResponse;
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import ca.uhn.fhir.rest.server.HardcodedServerAddressStrategy;
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import ca.uhn.fhir.rest.server.IResourceProvider;
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import ca.uhn.fhir.rest.server.ResourceBinding;
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import ca.uhn.fhir.rest.server.RestfulServerConfiguration;
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import ca.uhn.fhir.rest.server.method.BaseMethodBinding;
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import ca.uhn.fhir.rest.server.provider.ServerCapabilityStatementProvider;
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import ca.uhn.fhir.util.ReflectionUtil;
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import org.apache.commons.lang3.StringUtils;
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import org.hl7.fhir.dstu2.hapi.rest.server.ServerConformanceProvider;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.r4.model.CapabilityStatement;
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import org.slf4j.LoggerFactory;
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import ca.uhn.fhir.context.*;
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import ca.uhn.fhir.jaxrs.server.util.JaxRsRequest.Builder;
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import ca.uhn.fhir.rest.annotation.IdParam;
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import ca.uhn.fhir.rest.api.*;
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import ca.uhn.fhir.rest.api.server.IRestfulResponse;
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import ca.uhn.fhir.rest.server.*;
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import ca.uhn.fhir.rest.server.method.BaseMethodBinding;
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import ca.uhn.fhir.util.ReflectionUtil;
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import java.util.stream.Collectors;
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import javax.annotation.PostConstruct;
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import javax.ws.rs.GET;
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import javax.ws.rs.OPTIONS;
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import javax.ws.rs.Path;
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import javax.ws.rs.Produces;
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import javax.ws.rs.core.MediaType;
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import javax.ws.rs.core.Response;
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import java.io.IOException;
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import java.lang.annotation.Annotation;
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import java.lang.reflect.Method;
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import java.lang.reflect.Modifier;
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import java.util.ArrayList;
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import java.util.Collections;
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import java.util.LinkedList;
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import java.util.List;
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import java.util.Map.Entry;
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import java.util.Set;
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import java.util.concurrent.ConcurrentHashMap;
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/**
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* This is the conformance provider for the jax rs servers. It requires all providers to be registered during startup because the conformance profile is generated during the postconstruct phase.
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*
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*
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* @author Peter Van Houte | peter.vanhoute@agfa.com | Agfa Healthcare
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*/
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@Produces({ MediaType.APPLICATION_JSON, MediaType.APPLICATION_XML })
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@Produces({MediaType.APPLICATION_JSON, MediaType.APPLICATION_XML})
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public abstract class AbstractJaxRsConformanceProvider extends AbstractJaxRsProvider implements IResourceProvider {
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/** the logger */
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/**
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* the logger
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*/
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private static final org.slf4j.Logger ourLog = LoggerFactory.getLogger(AbstractJaxRsConformanceProvider.class);
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/** the server bindings */
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/**
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* the server bindings
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*/
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private ResourceBinding myServerBinding = new ResourceBinding();
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/** the resource bindings */
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/**
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* the resource bindings
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*/
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private ConcurrentHashMap<String, ResourceBinding> myResourceNameToBinding = new ConcurrentHashMap<String, ResourceBinding>();
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/** the server configuration */
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/**
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* the server configuration
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*/
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private RestfulServerConfiguration serverConfiguration = new RestfulServerConfiguration();
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/** the conformance. It is created once during startup */
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/**
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* the conformance. It is created once during startup
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*/
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private org.hl7.fhir.r4.model.CapabilityStatement myR4CapabilityStatement;
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private org.hl7.fhir.dstu3.model.CapabilityStatement myDstu3CapabilityStatement;
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private org.hl7.fhir.dstu2016may.model.Conformance myDstu2_1Conformance;
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/**
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* Constructor allowing the description, servername and server to be set
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*
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* @param implementationDescription
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* the implementation description. If null, "" is used
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* @param serverName
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* the server name. If null, "" is used
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* @param serverVersion
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* the server version. If null, "" is used
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*
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* @param implementationDescription the implementation description. If null, "" is used
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* @param serverName the server name. If null, "" is used
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* @param serverVersion the server version. If null, "" is used
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*/
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protected AbstractJaxRsConformanceProvider(String implementationDescription, String serverName, String serverVersion) {
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serverConfiguration.setFhirContext(getFhirContext());
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/**
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* Constructor allowing the description, servername and server to be set
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*
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* @param ctx
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* the {@link FhirContext} instance.
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* @param implementationDescription
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* the implementation description. If null, "" is used
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* @param serverName
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* the server name. If null, "" is used
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* @param serverVersion
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* the server version. If null, "" is used
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*
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* @param ctx the {@link FhirContext} instance.
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* @param implementationDescription the implementation description. If null, "" is used
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* @param serverName the server name. If null, "" is used
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* @param serverVersion the server version. If null, "" is used
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*/
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protected AbstractJaxRsConformanceProvider(FhirContext ctx, String implementationDescription, String serverName, String serverVersion) {
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super(ctx);
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@ -167,15 +183,15 @@ public abstract class AbstractJaxRsConformanceProvider extends AbstractJaxRsProv
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/**
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* This method must return all the resource providers which need to be included in the conformance
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*
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*
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* @return a map of the resource providers and their corresponding classes. This class needs to be given explicitly because retrieving the interface using {@link Object#getClass()} may not give the
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* correct interface in a jee environment.
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* correct interface in a jee environment.
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*/
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protected abstract ConcurrentHashMap<Class<? extends IResourceProvider>, IResourceProvider> getProviders();
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/**
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* This method will retrieve the conformance using the http OPTIONS method
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*
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*
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* @return the response containing the conformance
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*/
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@OPTIONS
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@ -186,7 +202,7 @@ public abstract class AbstractJaxRsConformanceProvider extends AbstractJaxRsProv
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/**
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* This method will retrieve the conformance using the http GET method
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*
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*
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* @return the response containing the conformance
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*/
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@GET
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Builder request = getRequest(RequestTypeEnum.OPTIONS, RestOperationTypeEnum.METADATA);
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IRestfulResponse response = request.build().getResponse();
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response.addHeader(Constants.HEADER_CORS_ALLOW_ORIGIN, "*");
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IBaseResource conformance;
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FhirVersionEnum fhirContextVersion = super.getFhirContext().getVersion().getVersion();
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switch (fhirContextVersion) {
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@ -219,7 +235,7 @@ public abstract class AbstractJaxRsConformanceProvider extends AbstractJaxRsProv
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default:
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throw new ConfigurationException("Unsupported Fhir version: " + fhirContextVersion);
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}
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if (conformance != null) {
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Set<SummaryEnum> summaryMode = Collections.emptySet();
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return (Response) response.streamResponseAsResource(conformance, false, summaryMode, Constants.STATUS_HTTP_200_OK, null, true, false);
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@ -229,11 +245,9 @@ public abstract class AbstractJaxRsConformanceProvider extends AbstractJaxRsProv
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/**
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* This method will add a provider to the conformance. This method is almost an exact copy of {@link ca.uhn.fhir.rest.server.RestfulServer#findResourceMethods(Object)}
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*
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* @param theProvider
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* an instance of the provider interface
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* @param theProviderInterface
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* the class describing the providers interface
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*
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* @param theProvider an instance of the provider interface
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* @param theProviderInterface the class describing the providers interface
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* @return the numbers of basemethodbindings added
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* @see ca.uhn.fhir.rest.server.RestfulServer#findResourceMethods(Object)
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*/
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@ -23,7 +23,10 @@ package ca.uhn.fhir.jaxrs.server;
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import java.io.IOException;
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import javax.interceptor.Interceptors;
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import javax.ws.rs.*;
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import javax.ws.rs.GET;
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import javax.ws.rs.Produces;
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import javax.ws.rs.QueryParam;
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import javax.ws.rs.core.MediaType;
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import javax.ws.rs.core.Response;
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@ -23,9 +23,13 @@ import java.io.IOException;
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import java.util.*;
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import java.util.Map.Entry;
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import javax.ws.rs.core.*;
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import javax.ws.rs.core.Context;
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import javax.ws.rs.core.HttpHeaders;
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import ca.uhn.fhir.interceptor.api.IInterceptorService;
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import javax.ws.rs.core.MultivaluedMap;
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import javax.ws.rs.core.Response;
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import javax.ws.rs.core.UriInfo;
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import org.apache.commons.lang3.StringUtils;
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import ca.uhn.fhir.context.FhirContext;
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@ -5,6 +5,7 @@ import ca.uhn.fhir.jaxrs.server.test.TestJaxRsDummyPatientProviderDstu2_1;
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import ca.uhn.fhir.jaxrs.server.test.TestJaxRsMockPatientRestProviderDstu2_1;
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import ca.uhn.fhir.rest.api.Constants;
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import ca.uhn.fhir.rest.server.IResourceProvider;
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import javax.ws.rs.core.MultivaluedMap;
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import org.jboss.resteasy.specimpl.ResteasyHttpHeaders;
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import org.junit.jupiter.api.BeforeEach;
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import org.junit.jupiter.api.Test;
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@ -16,7 +17,8 @@ import java.net.URI;
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import java.util.Arrays;
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import java.util.concurrent.ConcurrentHashMap;
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import static org.junit.jupiter.api.Assertions.*;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import static org.junit.jupiter.api.Assertions.assertTrue;
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import static org.mockito.Mockito.mock;
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import static org.mockito.Mockito.when;
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@ -27,7 +29,7 @@ public class AbstractJaxRsConformanceProviderDstu2_1Test {
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AbstractJaxRsConformanceProvider provider;
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private ConcurrentHashMap<Class<? extends IResourceProvider>, IResourceProvider> providers;
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private ResteasyHttpHeaders headers;
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private MultivaluedHashMap<String, String> queryParameters;
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private MultivaluedMap<String, String> queryParameters;
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@BeforeEach
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public void setUp() throws Exception {
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@ -85,7 +87,7 @@ public class AbstractJaxRsConformanceProviderDstu2_1Test {
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}
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private AbstractJaxRsConformanceProvider createConformanceProvider(final ConcurrentHashMap<Class<? extends IResourceProvider>, IResourceProvider> providers)
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throws Exception {
|
||||
throws Exception {
|
||||
AbstractJaxRsConformanceProvider result = new AbstractJaxRsConformanceProvider(FhirContext.forDstu2_1(), null, null, null) {
|
||||
@Override
|
||||
protected ConcurrentHashMap<Class<? extends IResourceProvider>, IResourceProvider> getProviders() {
|
||||
|
|
|
@ -14,7 +14,6 @@ import ca.uhn.fhir.rest.api.SearchStyleEnum;
|
|||
import ca.uhn.fhir.rest.client.api.IGenericClient;
|
||||
import ca.uhn.fhir.rest.client.api.ServerValidationModeEnum;
|
||||
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
|
||||
import ca.uhn.fhir.rest.param.StringAndListParam;
|
||||
import ca.uhn.fhir.rest.param.StringParam;
|
||||
import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
|
||||
import ca.uhn.fhir.test.utilities.JettyUtil;
|
||||
|
@ -36,6 +35,7 @@ import org.hl7.fhir.dstu3.model.Resource;
|
|||
import org.hl7.fhir.dstu3.model.StringType;
|
||||
import org.hl7.fhir.instance.model.api.IBaseOperationOutcome;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
import org.jboss.resteasy.plugins.server.servlet.HttpServletDispatcher;
|
||||
import org.junit.jupiter.api.AfterAll;
|
||||
import org.junit.jupiter.api.BeforeAll;
|
||||
import org.junit.jupiter.api.BeforeEach;
|
||||
|
@ -68,12 +68,9 @@ import static org.mockito.Mockito.when;
|
|||
public class AbstractJaxRsResourceProviderDstu3Test {
|
||||
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(AbstractJaxRsResourceProviderDstu3Test.class);
|
||||
private static IGenericClient client;
|
||||
|
||||
|
||||
private static FhirContext ourCtx = FhirContext.forDstu3();
|
||||
private static final String PATIENT_NAME = "Van Houte";
|
||||
|
||||
private static IGenericClient client;
|
||||
private static FhirContext ourCtx = FhirContext.forDstu3();
|
||||
private static int ourPort;
|
||||
private static String serverBase;
|
||||
private static Server jettyServer;
|
||||
|
@ -85,12 +82,6 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
private void compareResultId(int id, IBaseResource resource) {
|
||||
assertEquals(id, Integer.parseInt(resource.getIdElement().getIdPart()));
|
||||
}
|
||||
|
||||
@AfterAll
|
||||
public static void afterClassClearContext() throws Exception {
|
||||
JettyUtil.closeServer(jettyServer);
|
||||
TestUtil.randomizeLocaleAndTimezone();
|
||||
}
|
||||
|
||||
private void compareResultUrl(String url, IBaseResource resource) {
|
||||
assertEquals(url, resource.getIdElement().getValueAsString().substring(serverBase.length() - 1));
|
||||
|
@ -98,7 +89,7 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
|
||||
private Patient createPatient(long id) {
|
||||
Patient theResource = new Patient();
|
||||
theResource.setId(new IdType(id));
|
||||
theResource.setId(new IdType(id));
|
||||
return theResource;
|
||||
}
|
||||
|
||||
|
@ -110,7 +101,9 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
return result;
|
||||
}
|
||||
|
||||
/** Find By Id */
|
||||
/**
|
||||
* Find By Id
|
||||
*/
|
||||
@Test
|
||||
public void findUsingGenericClientById() {
|
||||
when(mock.find(any(IdType.class))).thenReturn(createPatient(1));
|
||||
|
@ -129,7 +122,7 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
for (long i = 0; i < size; i++) {
|
||||
Patient patient = createPatient(i);
|
||||
BundleEntryComponent entry = new BundleEntryComponent();
|
||||
entry.setResource(patient);
|
||||
entry.setResource(patient);
|
||||
result.addEntry(entry);
|
||||
}
|
||||
return result;
|
||||
|
@ -144,7 +137,9 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
reset(mock);
|
||||
}
|
||||
|
||||
/** Conditional Creates */
|
||||
/**
|
||||
* Conditional Creates
|
||||
*/
|
||||
@Test
|
||||
public void testConditionalCreate() throws Exception {
|
||||
Patient toCreate = createPatient(1);
|
||||
|
@ -156,14 +151,16 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
client.setEncoding(EncodingEnum.JSON);
|
||||
|
||||
MethodOutcome response = client.create().resource(toCreate).conditional()
|
||||
.where(Patient.IDENTIFIER.exactly().identifier("2")).prefer(PreferReturnEnum.REPRESENTATION).execute();
|
||||
.where(Patient.IDENTIFIER.exactly().identifier("2")).prefer(PreferReturnEnum.REPRESENTATION).execute();
|
||||
|
||||
assertEquals("myIdentifier", patientCaptor.getValue().getIdentifier().get(0).getValue());
|
||||
IBaseResource resource = response.getResource();
|
||||
compareResultId(1, resource);
|
||||
}
|
||||
|
||||
/** Conformance - Server */
|
||||
/**
|
||||
* Conformance - Server
|
||||
*/
|
||||
@Test
|
||||
public void testConformance() {
|
||||
final CapabilityStatement conf = client.fetchConformance().ofType(CapabilityStatement.class).execute();
|
||||
|
@ -180,7 +177,7 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
when(mock.create(patientCaptor.capture(), isNull())).thenReturn(outcome);
|
||||
client.setEncoding(EncodingEnum.JSON);
|
||||
final MethodOutcome response = client.create().resource(toCreate).prefer(PreferReturnEnum.REPRESENTATION)
|
||||
.execute();
|
||||
.execute();
|
||||
IBaseResource resource = response.getResource();
|
||||
compareResultId(1, resource);
|
||||
assertEquals("myIdentifier", patientCaptor.getValue().getIdentifier().get(0).getValue());
|
||||
|
@ -192,15 +189,17 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
final IBaseOperationOutcome results = client.delete().resourceById("Patient", "1").execute().getOperationOutcome();
|
||||
assertEquals("1", idCaptor.getValue().getIdPart());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testConditionalDelete() {
|
||||
when(mock.delete(idCaptor.capture(), conditionalCaptor.capture())).thenReturn(new MethodOutcome());
|
||||
client.delete().resourceConditionalByType("Patient").where(Patient.IDENTIFIER.exactly().identifier("2")).execute();
|
||||
assertEquals("Patient?identifier=2&_format=json", conditionalCaptor.getValue());
|
||||
}
|
||||
|
||||
/** Extended Operations */
|
||||
@Test
|
||||
public void testConditionalDelete() {
|
||||
when(mock.delete(idCaptor.capture(), conditionalCaptor.capture())).thenReturn(new MethodOutcome());
|
||||
client.delete().resourceConditionalByType("Patient").where(Patient.IDENTIFIER.exactly().identifier("2")).execute();
|
||||
assertEquals("Patient?identifier=2&_format=json", conditionalCaptor.getValue());
|
||||
}
|
||||
|
||||
/**
|
||||
* Extended Operations
|
||||
*/
|
||||
@Test
|
||||
public void testExtendedOperations() {
|
||||
// prepare mock
|
||||
|
@ -214,23 +213,9 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
inParams.addParameter().setName("dummy").setValue(new StringType("myAwesomeDummyValue"));
|
||||
//invoke
|
||||
Parameters outParams = client.operation().onInstance(new IdType("Patient", "1")).named("$someCustomOperation")
|
||||
.withParameters(inParams).execute();
|
||||
.withParameters(inParams).execute();
|
||||
//verify
|
||||
assertEquals("outputValue", ((StringType)outParams.getParameter().get(0).getValue()).getValueAsString());
|
||||
}
|
||||
|
||||
class StringTypeMatcher implements ArgumentMatcher<StringType> {
|
||||
private StringType myStringType;
|
||||
|
||||
public StringTypeMatcher(StringType stringType) {
|
||||
myStringType = stringType;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean matches(StringType argument) {
|
||||
return myStringType.getValue().equals(argument.getValue());
|
||||
}
|
||||
|
||||
assertEquals("outputValue", ((StringType) outParams.getParameter().get(0).getValue()).getValueAsString());
|
||||
}
|
||||
|
||||
@Test
|
||||
|
@ -238,7 +223,7 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
// prepare mock
|
||||
Parameters resultParameters = new Parameters();
|
||||
resultParameters.addParameter().setName("return").setResource(createPatient(1)).setValue(new StringType("outputValue"));
|
||||
when(mock.someCustomOperation(any(IdType.class), argThat(new StringTypeMatcher(new StringType("myAwesomeDummyValue"))))).thenReturn(resultParameters);
|
||||
when(mock.someCustomOperation(any(IdType.class), argThat(new StringTypeMatcher(new StringType("myAwesomeDummyValue"))))).thenReturn(resultParameters);
|
||||
// Create the input parameters to pass to the server
|
||||
Parameters inParams = new Parameters();
|
||||
inParams.addParameter().setName("start").setValue(new DateType("2001-01-01"));
|
||||
|
@ -255,7 +240,7 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
.execute();
|
||||
|
||||
// verify
|
||||
assertEquals("outputValue", ((StringType)outParams.getParameter().get(0).getValue()).getValueAsString());
|
||||
assertEquals("outputValue", ((StringType) outParams.getParameter().get(0).getValue()).getValueAsString());
|
||||
}
|
||||
|
||||
@Test
|
||||
|
@ -267,37 +252,43 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
assertEquals("1", idCaptor.getValue().getIdPart());
|
||||
}
|
||||
|
||||
/** Search - Compartments */
|
||||
/**
|
||||
* Search - Compartments
|
||||
*/
|
||||
@Test
|
||||
public void testSearchCompartments() {
|
||||
when(mock.searchCompartment(any(IdType.class))).thenReturn(Arrays.asList((IBaseResource) createPatient(1)));
|
||||
org.hl7.fhir.dstu3.model.Bundle response = client.search().forResource(Patient.class).withIdAndCompartment("1", "Condition")
|
||||
.returnBundle(org.hl7.fhir.dstu3.model.Bundle.class).execute();
|
||||
.returnBundle(org.hl7.fhir.dstu3.model.Bundle.class).execute();
|
||||
Resource resource = response.getEntry().get(0).getResource();
|
||||
compareResultId(1, resource);
|
||||
compareResultUrl("/Patient/1", resource);
|
||||
}
|
||||
|
||||
/** */
|
||||
/**
|
||||
*
|
||||
*/
|
||||
@Test
|
||||
public void testSearchPost() {
|
||||
when(mock.search(ArgumentMatchers.isNull(), ArgumentMatchers.isNull()))
|
||||
.thenReturn(createPatients(1, 13));
|
||||
.thenReturn(createPatients(1, 13));
|
||||
org.hl7.fhir.dstu3.model.Bundle result = client.search().forResource("Patient").usingStyle(SearchStyleEnum.POST)
|
||||
.returnBundle(org.hl7.fhir.dstu3.model.Bundle.class).execute();
|
||||
.returnBundle(org.hl7.fhir.dstu3.model.Bundle.class).execute();
|
||||
Resource resource = result.getEntry().get(0).getResource();
|
||||
compareResultId(1, resource);
|
||||
compareResultUrl("/Patient/1", resource);
|
||||
}
|
||||
|
||||
/** Search/Query - Type */
|
||||
/**
|
||||
* Search/Query - Type
|
||||
*/
|
||||
@Test
|
||||
public void testSearchUsingGenericClientBySearch() {
|
||||
// Perform a search
|
||||
when(mock.search(any(StringParam.class), isNull()))
|
||||
.thenReturn(Arrays.asList(createPatient(1)));
|
||||
.thenReturn(Arrays.asList(createPatient(1)));
|
||||
final Bundle results = client.search().forResource(Patient.class)
|
||||
.where(Patient.NAME.matchesExactly().value(PATIENT_NAME)).returnBundle(Bundle.class).execute();
|
||||
.where(Patient.NAME.matchesExactly().value(PATIENT_NAME)).returnBundle(Bundle.class).execute();
|
||||
verify(mock).search(any(StringParam.class), isNull());
|
||||
IBaseResource resource = results.getEntry().get(0).getResource();
|
||||
|
||||
|
@ -305,29 +296,33 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
compareResultUrl("/Patient/1", resource);
|
||||
}
|
||||
|
||||
/** Search - Multi-valued Parameters (ANY/OR) */
|
||||
/**
|
||||
* Search - Multi-valued Parameters (ANY/OR)
|
||||
*/
|
||||
@Test
|
||||
public void testSearchUsingGenericClientBySearchWithMultiValues() {
|
||||
when(mock.search(any(StringParam.class), ArgumentMatchers.notNull()))
|
||||
.thenReturn(Arrays.asList(createPatient(1)));
|
||||
.thenReturn(Arrays.asList(createPatient(1)));
|
||||
final Bundle results = client.search().forResource(Patient.class)
|
||||
.where(Patient.ADDRESS.matches().values("Toronto")).and(Patient.ADDRESS.matches().values("Ontario"))
|
||||
.and(Patient.ADDRESS.matches().values("Canada"))
|
||||
.where(Patient.NAME.matches().value("SHORTNAME")).returnBundle(Bundle.class).execute();
|
||||
.where(Patient.ADDRESS.matches().values("Toronto")).and(Patient.ADDRESS.matches().values("Ontario"))
|
||||
.and(Patient.ADDRESS.matches().values("Canada"))
|
||||
.where(Patient.NAME.matches().value("SHORTNAME")).returnBundle(Bundle.class).execute();
|
||||
IBaseResource resource = results.getEntry().get(0).getResource();
|
||||
|
||||
compareResultId(1, resource);
|
||||
compareResultUrl("/Patient/1", resource);
|
||||
}
|
||||
|
||||
/** Search - Paging */
|
||||
/**
|
||||
* Search - Paging
|
||||
*/
|
||||
@Test
|
||||
public void testSearchWithPaging() {
|
||||
// Perform a search
|
||||
when(mock.search(ArgumentMatchers.isNull(), ArgumentMatchers.isNull()))
|
||||
.thenReturn(createPatients(1, 13));
|
||||
.thenReturn(createPatients(1, 13));
|
||||
final org.hl7.fhir.dstu3.model.Bundle results = client.search().forResource(Patient.class).count(8).returnBundle(org.hl7.fhir.dstu3.model.Bundle.class)
|
||||
.execute();
|
||||
.execute();
|
||||
|
||||
assertEquals(results.getEntry().size(), 8);
|
||||
IBaseResource resource = results.getEntry().get(0).getResource();
|
||||
|
@ -348,15 +343,19 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
assertNull(nextPage.getLink(org.hl7.fhir.dstu3.model.Bundle.LINK_NEXT));
|
||||
}
|
||||
|
||||
/** Search - Subsetting (_summary and _elements) */
|
||||
/**
|
||||
* Search - Subsetting (_summary and _elements)
|
||||
*/
|
||||
@Test
|
||||
@Disabled
|
||||
public void testSummary() {
|
||||
Object response = client.search().forResource(Patient.class)
|
||||
.returnBundle(org.hl7.fhir.dstu3.model.Bundle.class).execute();
|
||||
.returnBundle(org.hl7.fhir.dstu3.model.Bundle.class).execute();
|
||||
}
|
||||
|
||||
/** Transaction - Server */
|
||||
/**
|
||||
* Transaction - Server
|
||||
*/
|
||||
// @Disabled
|
||||
// @Test
|
||||
// public void testTransaction() {
|
||||
|
@ -371,7 +370,6 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
// entry.setTransactionMethod(theTransactionOperation);
|
||||
// ca.uhn.fhir.model.api.Bundle response = client.transaction().withBundle(bundle).execute();
|
||||
// }
|
||||
|
||||
@Test
|
||||
public void testUpdateById() throws Exception {
|
||||
when(mock.update(idCaptor.capture(), patientCaptor.capture(), conditionalCaptor.capture())).thenReturn(new MethodOutcome());
|
||||
|
@ -379,17 +377,17 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
assertEquals("1", idCaptor.getValue().getIdPart());
|
||||
compareResultId(1, patientCaptor.getValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testConditionalUpdate() throws Exception {
|
||||
when(mock.update(idCaptor.capture(), patientCaptor.capture(), conditionalCaptor.capture())).thenReturn(new MethodOutcome());
|
||||
client.update().resource(createPatient(1)).conditional().where(Patient.IDENTIFIER.exactly().identifier("2")).execute();
|
||||
|
||||
assertEquals(null, patientCaptor.getValue().getIdElement().getIdPart());
|
||||
assertEquals(null, patientCaptor.getValue().getIdElement().getVersionIdPart());
|
||||
assertEquals("Patient?identifier=2&_format=json", conditionalCaptor.getValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testConditionalUpdate() throws Exception {
|
||||
when(mock.update(idCaptor.capture(), patientCaptor.capture(), conditionalCaptor.capture())).thenReturn(new MethodOutcome());
|
||||
client.update().resource(createPatient(1)).conditional().where(Patient.IDENTIFIER.exactly().identifier("2")).execute();
|
||||
|
||||
assertEquals(null, patientCaptor.getValue().getIdElement().getIdPart());
|
||||
assertEquals(null, patientCaptor.getValue().getIdElement().getVersionIdPart());
|
||||
assertEquals("Patient?identifier=2&_format=json", conditionalCaptor.getValue());
|
||||
}
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
@Disabled
|
||||
@Test
|
||||
|
@ -425,8 +423,8 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
assertTrue(e.getMessage().contains("999955541264"));
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
|
||||
@Test
|
||||
public void testValidate() {
|
||||
// prepare mock
|
||||
final OperationOutcome oo = new OperationOutcome();
|
||||
|
@ -441,33 +439,53 @@ public class AbstractJaxRsResourceProviderDstu3Test {
|
|||
assertNotNull(mO.getOperationOutcome());
|
||||
}
|
||||
|
||||
class StringTypeMatcher implements ArgumentMatcher<StringType> {
|
||||
private StringType myStringType;
|
||||
|
||||
public StringTypeMatcher(StringType stringType) {
|
||||
myStringType = stringType;
|
||||
}
|
||||
|
||||
@Override
|
||||
public boolean matches(StringType argument) {
|
||||
return myStringType.getValue().equals(argument.getValue());
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@AfterAll
|
||||
public static void afterClassClearContext() throws Exception {
|
||||
JettyUtil.closeServer(jettyServer);
|
||||
TestUtil.randomizeLocaleAndTimezone();
|
||||
}
|
||||
|
||||
@BeforeAll
|
||||
public static void setUpClass() throws Exception {
|
||||
ServletContextHandler context = new ServletContextHandler(ServletContextHandler.SESSIONS);
|
||||
context.setContextPath("/");
|
||||
jettyServer = new Server(0);
|
||||
jettyServer.setHandler(context);
|
||||
ServletHolder jerseyServlet = context.addServlet(org.jboss.resteasy.plugins.server.servlet.HttpServletDispatcher.class, "/*");
|
||||
ServletHolder jerseyServlet = context.addServlet(HttpServletDispatcher.class, "/*");
|
||||
jerseyServlet.setInitOrder(0);
|
||||
|
||||
//@formatter:off
|
||||
jerseyServlet.setInitParameter("resteasy.resources",
|
||||
StringUtils.join(Arrays.asList(
|
||||
TestJaxRsMockPatientRestProviderDstu3.class.getCanonicalName(),
|
||||
StringUtils.join(Arrays.asList(
|
||||
TestJaxRsMockPatientRestProviderDstu3.class.getCanonicalName(),
|
||||
// JaxRsExceptionInterceptor.class.getCanonicalName(),
|
||||
TestJaxRsConformanceRestProviderDstu3.class.getCanonicalName(),
|
||||
TestJaxRsMockPageProviderDstu3.class.getCanonicalName()
|
||||
), ","));
|
||||
TestJaxRsConformanceRestProviderDstu3.class.getCanonicalName(),
|
||||
TestJaxRsMockPageProviderDstu3.class.getCanonicalName()
|
||||
), ","));
|
||||
//@formatter:on
|
||||
|
||||
|
||||
JettyUtil.startServer(jettyServer);
|
||||
ourPort = JettyUtil.getPortForStartedServer(jettyServer);
|
||||
ourPort = JettyUtil.getPortForStartedServer(jettyServer);
|
||||
|
||||
ourCtx.setRestfulClientFactory(new JaxRsRestfulClientFactory(ourCtx));
|
||||
ourCtx.getRestfulClientFactory().setServerValidationMode(ServerValidationModeEnum.NEVER);
|
||||
ourCtx.getRestfulClientFactory().setSocketTimeout(1200 * 1000);
|
||||
serverBase = "http://localhost:" + ourPort + "/";
|
||||
client = ourCtx.newRestfulGenericClient(serverBase);
|
||||
serverBase = "http://localhost:" + ourPort + "/";
|
||||
client = ourCtx.newRestfulGenericClient(serverBase);
|
||||
client.setEncoding(EncodingEnum.JSON);
|
||||
client.registerInterceptor(new LoggingInterceptor(true));
|
||||
}
|
||||
|
|
|
@ -439,7 +439,7 @@ public class AbstractJaxRsResourceProviderTest {
|
|||
context.setContextPath("/");
|
||||
jettyServer = new Server(0);
|
||||
jettyServer.setHandler(context);
|
||||
ServletHolder jerseyServlet = context.addServlet(org.jboss.resteasy.plugins.server.servlet.HttpServletDispatcher.class, "/*");
|
||||
ServletHolder jerseyServlet = context.addServlet(org.jboss.resteasy.plugins.server.servlet.HttpServlet30Dispatcher.class, "/*");
|
||||
jerseyServlet.setInitOrder(0);
|
||||
|
||||
//@formatter:off
|
||||
|
|
|
@ -1,22 +1,21 @@
|
|||
package ca.uhn.fhir.jaxrs.server.test;
|
||||
|
||||
import java.util.concurrent.ConcurrentHashMap;
|
||||
|
||||
import javax.ejb.Stateless;
|
||||
import javax.ws.rs.Path;
|
||||
import javax.ws.rs.Produces;
|
||||
import javax.ws.rs.core.MediaType;
|
||||
|
||||
import ca.uhn.fhir.jaxrs.server.AbstractJaxRsConformanceProvider;
|
||||
import ca.uhn.fhir.rest.api.Constants;
|
||||
import ca.uhn.fhir.rest.server.IResourceProvider;
|
||||
import javax.ws.rs.Path;
|
||||
import javax.ws.rs.Produces;
|
||||
import javax.ws.rs.core.MediaType;
|
||||
|
||||
import javax.ejb.Stateless;
|
||||
import java.util.concurrent.ConcurrentHashMap;
|
||||
|
||||
/**
|
||||
* A conformance provider exposes the mock patient and this provider
|
||||
*/
|
||||
@Path("")
|
||||
@Stateless
|
||||
@Produces({ MediaType.APPLICATION_JSON, Constants.CT_FHIR_JSON, Constants.CT_FHIR_XML })
|
||||
@Produces({MediaType.APPLICATION_JSON, Constants.CT_FHIR_JSON, Constants.CT_FHIR_XML})
|
||||
public class TestJaxRsConformanceRestProvider extends AbstractJaxRsConformanceProvider {
|
||||
|
||||
public TestJaxRsConformanceRestProvider() {
|
||||
|
|
|
@ -3,6 +3,7 @@ package ca.uhn.fhir.jaxrs.server.test;
|
|||
import java.util.concurrent.ConcurrentHashMap;
|
||||
|
||||
import javax.ejb.Stateless;
|
||||
|
||||
import javax.ws.rs.Path;
|
||||
import javax.ws.rs.Produces;
|
||||
import javax.ws.rs.core.MediaType;
|
||||
|
|
|
@ -50,6 +50,7 @@ import ca.uhn.fhir.rest.server.exceptions.ResourceVersionConflictException;
|
|||
import ca.uhn.fhir.rest.server.servlet.ServletRequestDetails;
|
||||
import ca.uhn.fhir.rest.server.util.ISearchParamRegistry;
|
||||
import ca.uhn.fhir.test.BaseTest;
|
||||
import ca.uhn.fhir.test.utilities.BatchJobHelper;
|
||||
import ca.uhn.fhir.test.utilities.LoggingExtension;
|
||||
import ca.uhn.fhir.test.utilities.ProxyUtil;
|
||||
import ca.uhn.fhir.test.utilities.UnregisterScheduledProcessor;
|
||||
|
@ -81,6 +82,10 @@ import org.junit.jupiter.api.extension.RegisterExtension;
|
|||
import org.mockito.Answers;
|
||||
import org.mockito.Mock;
|
||||
import org.mockito.MockitoAnnotations;
|
||||
import org.springframework.batch.core.repository.dao.JobExecutionDao;
|
||||
import org.springframework.batch.core.repository.dao.JobInstanceDao;
|
||||
import org.springframework.batch.core.repository.dao.MapJobExecutionDao;
|
||||
import org.springframework.batch.core.repository.dao.MapJobInstanceDao;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.beans.factory.annotation.Qualifier;
|
||||
import org.springframework.orm.jpa.JpaTransactionManager;
|
||||
|
@ -195,6 +200,21 @@ public abstract class BaseJpaTest extends BaseTest {
|
|||
private IForcedIdDao myForcedIdDao;
|
||||
@Autowired(required = false)
|
||||
protected IFulltextSearchSvc myFulltestSearchSvc;
|
||||
@Autowired(required = false)
|
||||
protected BatchJobHelper myBatchJobHelper;
|
||||
@Autowired(required = false)
|
||||
private JobExecutionDao myMapJobExecutionDao;
|
||||
@Autowired(required = false)
|
||||
private JobInstanceDao myMapJobInstanceDao;
|
||||
|
||||
@AfterEach
|
||||
public void afterEnsureNoStaleBatchJobs() {
|
||||
if (myMapJobInstanceDao != null) {
|
||||
myBatchJobHelper.ensureNoRunningJobs();
|
||||
ProxyUtil.getSingletonTarget(myMapJobExecutionDao, MapJobExecutionDao.class).clear();
|
||||
ProxyUtil.getSingletonTarget(myMapJobInstanceDao, MapJobInstanceDao.class).clear();
|
||||
}
|
||||
}
|
||||
|
||||
@AfterEach
|
||||
public void afterPerformCleanup() {
|
||||
|
|
|
@ -87,7 +87,9 @@ import ca.uhn.fhir.rest.api.EncodingEnum;
|
|||
import ca.uhn.fhir.rest.server.BasePagingProvider;
|
||||
import ca.uhn.fhir.rest.server.interceptor.IServerInterceptor;
|
||||
import ca.uhn.fhir.rest.server.provider.ResourceProviderFactory;
|
||||
import ca.uhn.fhir.test.utilities.BatchJobHelper;
|
||||
import ca.uhn.fhir.test.utilities.ITestDataBuilder;
|
||||
import ca.uhn.fhir.test.utilities.ProxyUtil;
|
||||
import ca.uhn.fhir.util.ClasspathUtil;
|
||||
import ca.uhn.fhir.util.UrlUtil;
|
||||
import ca.uhn.fhir.validation.FhirValidator;
|
||||
|
@ -171,6 +173,10 @@ import org.junit.jupiter.api.AfterEach;
|
|||
import org.junit.jupiter.api.BeforeEach;
|
||||
import org.junit.jupiter.api.extension.ExtendWith;
|
||||
import org.slf4j.event.Level;
|
||||
import org.springframework.batch.core.repository.dao.JobExecutionDao;
|
||||
import org.springframework.batch.core.repository.dao.JobInstanceDao;
|
||||
import org.springframework.batch.core.repository.dao.MapJobExecutionDao;
|
||||
import org.springframework.batch.core.repository.dao.MapJobInstanceDao;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.beans.factory.annotation.Qualifier;
|
||||
import org.springframework.context.ApplicationContext;
|
||||
|
@ -492,11 +498,6 @@ public abstract class BaseJpaR4Test extends BaseJpaTest implements ITestDataBuil
|
|||
@Autowired
|
||||
protected DaoRegistry myDaoRegistry;
|
||||
@Autowired
|
||||
private IValidationSupport myJpaValidationSupportChainR4;
|
||||
private PerformanceTracingLoggingInterceptor myPerformanceTracingLoggingInterceptor;
|
||||
@Autowired
|
||||
private IBulkDataExportSvc myBulkDataExportSvc;
|
||||
@Autowired
|
||||
protected IdHelperService myIdHelperService;
|
||||
@Autowired
|
||||
protected IBatchJobSubmitter myBatchJobSubmitter;
|
||||
|
@ -504,6 +505,11 @@ public abstract class BaseJpaR4Test extends BaseJpaTest implements ITestDataBuil
|
|||
protected ValidationSettings myValidationSettings;
|
||||
@Autowired
|
||||
protected IMdmLinkDao myMdmLinkDao;
|
||||
@Autowired
|
||||
private IValidationSupport myJpaValidationSupportChainR4;
|
||||
private PerformanceTracingLoggingInterceptor myPerformanceTracingLoggingInterceptor;
|
||||
@Autowired
|
||||
private IBulkDataExportSvc myBulkDataExportSvc;
|
||||
|
||||
@AfterEach()
|
||||
public void afterCleanupDao() {
|
||||
|
@ -564,7 +570,7 @@ public abstract class BaseJpaR4Test extends BaseJpaTest implements ITestDataBuil
|
|||
|
||||
@AfterEach
|
||||
public void afterPurgeDatabase() {
|
||||
runInTransaction(()->{
|
||||
runInTransaction(() -> {
|
||||
myMdmLinkDao.deleteAll();
|
||||
});
|
||||
purgeDatabase(myDaoConfig, mySystemDao, myResourceReindexingSvc, mySearchCoordinatorSvc, mySearchParamRegistry, myBulkDataExportSvc);
|
||||
|
@ -623,23 +629,6 @@ public abstract class BaseJpaR4Test extends BaseJpaTest implements ITestDataBuil
|
|||
}
|
||||
}
|
||||
|
||||
public class ValidationPolicyAdvisor implements IValidationPolicyAdvisor {
|
||||
@Override
|
||||
public ReferenceValidationPolicy policyForReference(IResourceValidator validator, Object appContext, String path, String url) {
|
||||
return ReferenceValidationPolicy.CHECK_VALID;
|
||||
}
|
||||
|
||||
@Override
|
||||
public CodedContentValidationPolicy policyForCodedContent(IResourceValidator iResourceValidator, Object o, String s, ElementDefinition elementDefinition, org.hl7.fhir.r5.model.StructureDefinition structureDefinition, BindingKind bindingKind, org.hl7.fhir.r5.model.ValueSet valueSet, List<String> list) {
|
||||
return CodedContentValidationPolicy.CODE;
|
||||
}
|
||||
|
||||
@Override
|
||||
public ContainedReferenceValidationPolicy policyForContained(IResourceValidator validator, Object appContext, String containerType, String containerId, Element.SpecialElement containingResourceType, String path, String url) {
|
||||
return ContainedReferenceValidationPolicy.CHECK_VALID;
|
||||
}
|
||||
}
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
protected void upload(String theClasspath) throws IOException {
|
||||
String resource = loadResource(theClasspath);
|
||||
|
@ -649,7 +638,6 @@ public abstract class BaseJpaR4Test extends BaseJpaTest implements ITestDataBuil
|
|||
dao.update(resourceParsed);
|
||||
}
|
||||
|
||||
|
||||
protected void assertHierarchyContains(String... theStrings) {
|
||||
List<String> hierarchy = runInTransaction(() -> {
|
||||
List<String> hierarchyHolder = new ArrayList<>();
|
||||
|
@ -667,6 +655,72 @@ public abstract class BaseJpaR4Test extends BaseJpaTest implements ITestDataBuil
|
|||
}
|
||||
}
|
||||
|
||||
protected ValueSet.ConceptReferenceDesignationComponent assertConceptContainsDesignation(ValueSet.ValueSetExpansionContainsComponent theConcept, String theLanguage, String theUseSystem, String theUseCode, String theUseDisplay, String theDesignationValue) {
|
||||
Stream<ValueSet.ConceptReferenceDesignationComponent> stream = theConcept.getDesignation().stream();
|
||||
if (theLanguage != null) {
|
||||
stream = stream.filter(designation -> theLanguage.equalsIgnoreCase(designation.getLanguage()));
|
||||
}
|
||||
if (theUseSystem != null) {
|
||||
stream = stream.filter(designation -> theUseSystem.equalsIgnoreCase(designation.getUse().getSystem()));
|
||||
}
|
||||
if (theUseCode != null) {
|
||||
stream = stream.filter(designation -> theUseCode.equalsIgnoreCase(designation.getUse().getCode()));
|
||||
}
|
||||
if (theUseDisplay != null) {
|
||||
stream = stream.filter(designation -> theUseDisplay.equalsIgnoreCase(designation.getUse().getDisplay()));
|
||||
}
|
||||
if (theDesignationValue != null) {
|
||||
stream = stream.filter(designation -> theDesignationValue.equalsIgnoreCase(designation.getValue()));
|
||||
}
|
||||
|
||||
Optional<ValueSet.ConceptReferenceDesignationComponent> first = stream.findFirst();
|
||||
if (!first.isPresent()) {
|
||||
String failureMessage = String.format("Concept %s did not contain designation [%s|%s|%s|%s|%s] ", theConcept, theLanguage, theUseSystem, theUseCode, theUseDisplay, theDesignationValue);
|
||||
fail(failureMessage);
|
||||
return null;
|
||||
} else {
|
||||
return first.get();
|
||||
}
|
||||
}
|
||||
|
||||
protected ValueSet.ValueSetExpansionContainsComponent assertExpandedValueSetContainsConcept(ValueSet theValueSet, String theSystem, String theCode, String theDisplay, Integer theDesignationCount) {
|
||||
List<ValueSet.ValueSetExpansionContainsComponent> contains = theValueSet.getExpansion().getContains();
|
||||
|
||||
Stream<ValueSet.ValueSetExpansionContainsComponent> stream = contains.stream();
|
||||
if (theSystem != null) {
|
||||
stream = stream.filter(concept -> theSystem.equalsIgnoreCase(concept.getSystem()));
|
||||
}
|
||||
if (theCode != null) {
|
||||
stream = stream.filter(concept -> theCode.equalsIgnoreCase(concept.getCode()));
|
||||
}
|
||||
if (theDisplay != null) {
|
||||
stream = stream.filter(concept -> theDisplay.equalsIgnoreCase(concept.getDisplay()));
|
||||
}
|
||||
if (theDesignationCount != null) {
|
||||
stream = stream.filter(concept -> concept.getDesignation().size() == theDesignationCount);
|
||||
}
|
||||
|
||||
Optional<ValueSet.ValueSetExpansionContainsComponent> first = stream.findFirst();
|
||||
if (!first.isPresent()) {
|
||||
String expandedValueSetString = myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(theValueSet);
|
||||
String failureMessage = String.format("Expanded ValueSet %s did not contain concept [%s|%s|%s] with [%d] designations. Outcome:\n%s", theValueSet.getId(), theSystem, theCode, theDisplay, theDesignationCount, expandedValueSetString);
|
||||
fail(failureMessage);
|
||||
return null;
|
||||
} else {
|
||||
return first.get();
|
||||
}
|
||||
}
|
||||
|
||||
public List<String> getExpandedConceptsByValueSetUrl(String theValuesetUrl) {
|
||||
return runInTransaction(() -> {
|
||||
List<TermValueSet> valueSets = myTermValueSetDao.findTermValueSetByUrl(Pageable.unpaged(), theValuesetUrl);
|
||||
assertEquals(1, valueSets.size());
|
||||
TermValueSet valueSet = valueSets.get(0);
|
||||
List<TermValueSetConcept> concepts = valueSet.getConcepts();
|
||||
return concepts.stream().map(concept -> concept.getCode()).collect(Collectors.toList());
|
||||
});
|
||||
}
|
||||
|
||||
private static void flattenExpansionHierarchy(List<String> theFlattenedHierarchy, List<TermConcept> theCodes, String thePrefix) {
|
||||
theCodes.sort((o1, o2) -> {
|
||||
int s1 = o1.getSequence() != null ? o1.getSequence() : o1.getCode().hashCode();
|
||||
|
@ -796,70 +850,20 @@ public abstract class BaseJpaR4Test extends BaseJpaTest implements ITestDataBuil
|
|||
return uuid;
|
||||
}
|
||||
|
||||
|
||||
protected ValueSet.ConceptReferenceDesignationComponent assertConceptContainsDesignation(ValueSet.ValueSetExpansionContainsComponent theConcept, String theLanguage, String theUseSystem, String theUseCode, String theUseDisplay, String theDesignationValue) {
|
||||
Stream<ValueSet.ConceptReferenceDesignationComponent> stream = theConcept.getDesignation().stream();
|
||||
if (theLanguage != null) {
|
||||
stream = stream.filter(designation -> theLanguage.equalsIgnoreCase(designation.getLanguage()));
|
||||
}
|
||||
if (theUseSystem != null) {
|
||||
stream = stream.filter(designation -> theUseSystem.equalsIgnoreCase(designation.getUse().getSystem()));
|
||||
}
|
||||
if (theUseCode != null) {
|
||||
stream = stream.filter(designation -> theUseCode.equalsIgnoreCase(designation.getUse().getCode()));
|
||||
}
|
||||
if (theUseDisplay != null) {
|
||||
stream = stream.filter(designation -> theUseDisplay.equalsIgnoreCase(designation.getUse().getDisplay()));
|
||||
}
|
||||
if (theDesignationValue != null) {
|
||||
stream = stream.filter(designation -> theDesignationValue.equalsIgnoreCase(designation.getValue()));
|
||||
public class ValidationPolicyAdvisor implements IValidationPolicyAdvisor {
|
||||
@Override
|
||||
public ReferenceValidationPolicy policyForReference(IResourceValidator validator, Object appContext, String path, String url) {
|
||||
return ReferenceValidationPolicy.CHECK_VALID;
|
||||
}
|
||||
|
||||
Optional<ValueSet.ConceptReferenceDesignationComponent> first = stream.findFirst();
|
||||
if (!first.isPresent()) {
|
||||
String failureMessage = String.format("Concept %s did not contain designation [%s|%s|%s|%s|%s] ", theConcept, theLanguage, theUseSystem, theUseCode, theUseDisplay, theDesignationValue);
|
||||
fail(failureMessage);
|
||||
return null;
|
||||
} else {
|
||||
return first.get();
|
||||
}
|
||||
}
|
||||
|
||||
protected ValueSet.ValueSetExpansionContainsComponent assertExpandedValueSetContainsConcept(ValueSet theValueSet, String theSystem, String theCode, String theDisplay, Integer theDesignationCount) {
|
||||
List<ValueSet.ValueSetExpansionContainsComponent> contains = theValueSet.getExpansion().getContains();
|
||||
|
||||
Stream<ValueSet.ValueSetExpansionContainsComponent> stream = contains.stream();
|
||||
if (theSystem != null) {
|
||||
stream = stream.filter(concept -> theSystem.equalsIgnoreCase(concept.getSystem()));
|
||||
}
|
||||
if (theCode != null) {
|
||||
stream = stream.filter(concept -> theCode.equalsIgnoreCase(concept.getCode()));
|
||||
}
|
||||
if (theDisplay != null) {
|
||||
stream = stream.filter(concept -> theDisplay.equalsIgnoreCase(concept.getDisplay()));
|
||||
}
|
||||
if (theDesignationCount != null) {
|
||||
stream = stream.filter(concept -> concept.getDesignation().size() == theDesignationCount);
|
||||
@Override
|
||||
public CodedContentValidationPolicy policyForCodedContent(IResourceValidator iResourceValidator, Object o, String s, ElementDefinition elementDefinition, org.hl7.fhir.r5.model.StructureDefinition structureDefinition, BindingKind bindingKind, org.hl7.fhir.r5.model.ValueSet valueSet, List<String> list) {
|
||||
return CodedContentValidationPolicy.CODE;
|
||||
}
|
||||
|
||||
Optional<ValueSet.ValueSetExpansionContainsComponent> first = stream.findFirst();
|
||||
if (!first.isPresent()) {
|
||||
String expandedValueSetString = myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(theValueSet);
|
||||
String failureMessage = String.format("Expanded ValueSet %s did not contain concept [%s|%s|%s] with [%d] designations. Outcome:\n%s", theValueSet.getId(), theSystem, theCode, theDisplay, theDesignationCount, expandedValueSetString);
|
||||
fail(failureMessage);
|
||||
return null;
|
||||
} else {
|
||||
return first.get();
|
||||
@Override
|
||||
public ContainedReferenceValidationPolicy policyForContained(IResourceValidator validator, Object appContext, String containerType, String containerId, Element.SpecialElement containingResourceType, String path, String url) {
|
||||
return ContainedReferenceValidationPolicy.CHECK_VALID;
|
||||
}
|
||||
}
|
||||
|
||||
public List<String> getExpandedConceptsByValueSetUrl(String theValuesetUrl) {
|
||||
return runInTransaction(() -> {
|
||||
List<TermValueSet> valueSets = myTermValueSetDao.findTermValueSetByUrl(Pageable.unpaged(), theValuesetUrl);
|
||||
assertEquals(1, valueSets.size());
|
||||
TermValueSet valueSet = valueSets.get(0);
|
||||
List<TermValueSetConcept> concepts = valueSet.getConcepts();
|
||||
return concepts.stream().map(concept -> concept.getCode()).collect(Collectors.toList());
|
||||
});
|
||||
}
|
||||
}
|
||||
|
|
|
@ -158,9 +158,6 @@ public class FhirResourceDaoR4Test extends BaseJpaR4Test {
|
|||
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoR4Test.class);
|
||||
|
||||
@Autowired
|
||||
private BatchJobHelper myBatchJobHelper;
|
||||
|
||||
@AfterEach
|
||||
public final void after() {
|
||||
myDaoConfig.setAllowExternalReferences(new DaoConfig().isAllowExternalReferences());
|
||||
|
|
|
@ -20,6 +20,9 @@ package ca.uhn.fhir.test.utilities;
|
|||
* #L%
|
||||
*/
|
||||
|
||||
import ca.uhn.fhir.util.StopWatch;
|
||||
import org.awaitility.core.ConditionTimeoutException;
|
||||
import org.hamcrest.Matchers;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.batch.core.BatchStatus;
|
||||
|
@ -37,7 +40,11 @@ import java.util.stream.Collectors;
|
|||
|
||||
import static org.awaitility.Awaitility.await;
|
||||
import static org.hamcrest.MatcherAssert.assertThat;
|
||||
import static org.hamcrest.Matchers.empty;
|
||||
import static org.hamcrest.Matchers.equalTo;
|
||||
import static org.hamcrest.Matchers.hasSize;
|
||||
import static org.hamcrest.Matchers.not;
|
||||
import static org.hamcrest.Matchers.oneOf;
|
||||
import static org.junit.jupiter.api.Assertions.fail;
|
||||
|
||||
public class BatchJobHelper {
|
||||
|
@ -55,15 +62,18 @@ public class BatchJobHelper {
|
|||
|
||||
/**
|
||||
* Await and report for job completions
|
||||
*
|
||||
* @param theFailIfNotJobsFound indicate if must fail in case no matching jobs are found
|
||||
* @param theJobNames The job names to match
|
||||
* @param theJobNames The job names to match
|
||||
* @return the matched JobExecution(s)
|
||||
*/
|
||||
public List<JobExecution> awaitAllBulkJobCompletions(boolean theFailIfNotJobsFound, String... theJobNames) {
|
||||
assert theJobNames.length > 0;
|
||||
|
||||
if (theFailIfNotJobsFound) {
|
||||
await().until(() -> !getJobInstances(theJobNames).isEmpty());
|
||||
await()
|
||||
.alias("Wait for jobs to exist named: " + Arrays.asList(theJobNames))
|
||||
.until(() -> getJobInstances(theJobNames), not(empty()));
|
||||
}
|
||||
List<JobInstance> matchingJobInstances = getJobInstances(theJobNames);
|
||||
|
||||
|
@ -97,19 +107,43 @@ public class BatchJobHelper {
|
|||
}
|
||||
|
||||
protected void awaitJobCompletions(Collection<JobExecution> theJobs) {
|
||||
theJobs.forEach(jobExecution -> awaitJobCompletion(jobExecution));
|
||||
// This intermittently fails for unknown reasons, so I've added a bunch
|
||||
// of extra junk here to improve what we output when it fails
|
||||
for (JobExecution jobExecution : theJobs) {
|
||||
try {
|
||||
awaitJobCompletion(jobExecution);
|
||||
} catch (ConditionTimeoutException e) {
|
||||
StringBuilder msg = new StringBuilder();
|
||||
msg.append("Failed waiting for job to complete.\n");
|
||||
msg.append("Error: ").append(e).append("\n");
|
||||
msg.append("Statuses:");
|
||||
for (JobExecution next : theJobs) {
|
||||
JobExecution execution = myJobExplorer.getJobExecution(next.getId());
|
||||
msg.append("\n * Execution ")
|
||||
.append(execution.getId())
|
||||
.append(" has status ")
|
||||
.append(execution.getStatus());
|
||||
}
|
||||
fail(msg.toString());
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
public void awaitJobCompletion(JobExecution theJobExecution) {
|
||||
await().atMost(120, TimeUnit.SECONDS).until(() -> {
|
||||
JobExecution jobExecution = myJobExplorer.getJobExecution(theJobExecution.getId());
|
||||
ourLog.info("JobExecution {} currently has status: {}- Failures if any: {}", theJobExecution.getId(), jobExecution.getStatus(), jobExecution.getFailureExceptions());
|
||||
// JM: Adding ABANDONED status because given the description, it s similar to FAILURE, and we need to avoid tests failing because
|
||||
// of wait timeouts caused by unmatched statuses. Also adding STOPPED because tests were found where this wait timed out
|
||||
// with jobs keeping that status during the whole wait
|
||||
return jobExecution.getStatus() == BatchStatus.COMPLETED || jobExecution.getStatus() == BatchStatus.FAILED
|
||||
|| jobExecution.getStatus() == BatchStatus.ABANDONED || jobExecution.getStatus() == BatchStatus.STOPPED;
|
||||
});
|
||||
await()
|
||||
.atMost(120, TimeUnit.SECONDS).until(() -> {
|
||||
JobExecution jobExecution = myJobExplorer.getJobExecution(theJobExecution.getId());
|
||||
ourLog.info("JobExecution {} currently has status: {}- Failures if any: {}", theJobExecution.getId(), jobExecution.getStatus(), jobExecution.getFailureExceptions());
|
||||
return jobExecution.getStatus();
|
||||
}, Matchers.oneOf(
|
||||
// JM: Adding ABANDONED status because given the description, it s similar to FAILURE, and we need to avoid tests failing because
|
||||
// of wait timeouts caused by unmatched statuses. Also adding STOPPED because tests were found where this wait timed out
|
||||
// with jobs keeping that status during the whole wait
|
||||
BatchStatus.COMPLETED,
|
||||
BatchStatus.FAILED,
|
||||
BatchStatus.ABANDONED,
|
||||
BatchStatus.STOPPED
|
||||
));
|
||||
}
|
||||
|
||||
public int getReadCount(Long theJobExecutionId) {
|
||||
|
@ -129,4 +163,24 @@ public class BatchJobHelper {
|
|||
return stepExecutions.iterator().next();
|
||||
}
|
||||
|
||||
public void ensureNoRunningJobs() {
|
||||
for (String nextJobName : myJobExplorer.getJobNames()) {
|
||||
List<JobInstance> instances = myJobExplorer.getJobInstances(nextJobName, 0, 10000);
|
||||
for (JobInstance nextInstance : instances) {
|
||||
List<JobExecution> executions = myJobExplorer.getJobExecutions(nextInstance);
|
||||
for (JobExecution nextExecution : executions) {
|
||||
ourLog.info("Have job execution {} in status: {}", nextExecution.getId(), nextExecution.getStatus());
|
||||
try {
|
||||
await().until(() -> myJobExplorer.getJobExecution(nextExecution.getId()).getStatus(), oneOf(BatchStatus.STOPPED, BatchStatus.ABANDONED, BatchStatus.FAILED, BatchStatus.COMPLETED));
|
||||
} catch (ConditionTimeoutException e) {
|
||||
JobExecution execution = myJobExplorer.getJobExecution(nextExecution.getId());
|
||||
fail("Execution " + execution + "\n" +
|
||||
"Instance: " + nextInstance + "\n" +
|
||||
"Job: " + nextJobName);
|
||||
}
|
||||
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
13
pom.xml
13
pom.xml
|
@ -825,7 +825,7 @@
|
|||
<okhttp_version>3.8.1</okhttp_version>
|
||||
<poi_version>4.1.2</poi_version>
|
||||
<poi_ooxml_schemas_version>1.4</poi_ooxml_schemas_version>
|
||||
<resteasy_version>4.0.0.Beta3</resteasy_version>
|
||||
<resteasy_version>5.0.2.Final</resteasy_version>
|
||||
<ph_schematron_version>5.6.5</ph_schematron_version>
|
||||
<ph_commons_version>9.5.4</ph_commons_version>
|
||||
<plexus_compiler_api_version>2.9.0</plexus_compiler_api_version>
|
||||
|
@ -1156,11 +1156,6 @@
|
|||
<artifactId>validation-api</artifactId>
|
||||
<version>2.0.1.Final</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>javax.ws.rs</groupId>
|
||||
<artifactId>javax.ws.rs-api</artifactId>
|
||||
<version>2.0.1</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<!--
|
||||
We use JUnit 5 in HAPI FHIR, but some libraries still pull in / require JUnit 4
|
||||
|
@ -1531,9 +1526,9 @@
|
|||
<version>${jersey_version}</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.jboss.resteasy</groupId>
|
||||
<artifactId>resteasy-jaxrs</artifactId>
|
||||
<version>${resteasy_version}</version>
|
||||
<groupId>org.jboss.spec.javax.ws.rs</groupId>
|
||||
<artifactId>jboss-jaxrs-api_2.1_spec</artifactId>
|
||||
<version>2.0.1.Final</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.jboss.resteasy</groupId>
|
||||
|
|
|
@ -71,10 +71,6 @@
|
|||
<artifactId>jetty-servlet</artifactId>
|
||||
<version>${jetty_version}</version>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.jboss.resteasy</groupId>
|
||||
<artifactId>resteasy-jaxrs</artifactId>
|
||||
</dependency>
|
||||
<dependency>
|
||||
<groupId>org.jboss.resteasy</groupId>
|
||||
<artifactId>resteasy-client</artifactId>
|
||||
|
|
|
@ -8,7 +8,6 @@ import org.eclipse.jetty.server.Server
|
|||
import org.eclipse.jetty.servlet.ServletContextHandler
|
||||
import org.hamcrest.CoreMatchers.`is`
|
||||
import org.hamcrest.MatcherAssert.assertThat
|
||||
import org.jboss.resteasy.client.jaxrs.ResteasyClientBuilder
|
||||
import org.jboss.resteasy.plugins.server.servlet.HttpServletDispatcher
|
||||
import org.junit.jupiter.api.AfterAll
|
||||
import org.junit.jupiter.api.BeforeAll
|
||||
|
@ -19,7 +18,7 @@ class ExtendedOrganizationResourceTest {
|
|||
|
||||
@Test
|
||||
fun makeSureSearchDoesNotThrowOnIncludeParam() {
|
||||
val response = ResteasyClientBuilder()
|
||||
val response = org.jboss.resteasy.client.jaxrs.internal.ResteasyClientBuilderImpl()
|
||||
.build()
|
||||
.target("http://localhost:$ourPort/Organization?_id=1")
|
||||
.request()
|
||||
|
|
Loading…
Reference in New Issue