Fix a crash when reindexing deleted resources
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6d83edabb6
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@ -1772,8 +1772,12 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao,
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protected ResourceTable updateEntity(RequestDetails theRequest, final IBaseResource theResource, ResourceTable
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theEntity, Date theDeletedTimestampOrNull, boolean thePerformIndexing,
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boolean theUpdateVersion, Date theUpdateTime, boolean theForceUpdate, boolean theCreateNewHistoryEntry) {
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Validate.notNull(theEntity);
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Validate.isTrue(theDeletedTimestampOrNull != null || theResource != null, "Must have either a resource[{}] or a deleted timestamp[{}] for resource PID[{}]", theDeletedTimestampOrNull != null, theResource != null, theEntity.getId());
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ourLog.debug("Starting entity update");
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/*
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* This should be the very first thing..
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*/
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@ -1863,6 +1867,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao,
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theEntity.setNarrativeTextParsedIntoWords(null);
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theEntity.setContentTextParsedIntoWords(null);
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theEntity.setHashSha256(null);
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theEntity.setIndexStatus(INDEX_STATUS_INDEXED);
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changed = populateResourceIntoEntity(theRequest, theResource, theEntity, true);
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} else {
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@ -9,9 +9,9 @@ package ca.uhn.fhir.jpa.dao;
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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@ -927,10 +927,14 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
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@Override
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public void reindex(T theResource, ResourceTable theEntity) {
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ourLog.debug("Indexing resource {} - PID {}", theResource.getIdElement().getValue(), theEntity.getId());
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CURRENTLY_REINDEXING.put(theResource, Boolean.TRUE);
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updateEntity(null, theResource, theEntity, null, true, false, theEntity.getUpdatedDate(), true, false);
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CURRENTLY_REINDEXING.put(theResource, null);
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ourLog.debug("Indexing resource {} - PID {}", theEntity.getIdDt().getValue(), theEntity.getId());
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if (theResource != null) {
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CURRENTLY_REINDEXING.put(theResource, Boolean.TRUE);
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}
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updateEntity(null, theResource, theEntity, theEntity.getDeleted(), true, false, theEntity.getUpdatedDate(), true, false);
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if (theResource != null) {
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CURRENTLY_REINDEXING.put(theResource, null);
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}
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}
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@Override
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@ -1062,6 +1066,11 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
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mySecondaryPrimaryKeyParamName = theSecondaryPrimaryKeyParamName;
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}
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@PostConstruct
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public void start() {
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ourLog.debug("Starting resource DAO for type: {}", getResourceName());
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}
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protected <MT extends IBaseMetaType> MT toMetaDt(Class<MT> theType, Collection<TagDefinition> tagDefinitions) {
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MT retVal;
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try {
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@ -1333,9 +1342,4 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
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}
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}
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@PostConstruct
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public void start() {
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ourLog.debug("Starting resource DAO for type: {}", getResourceName());
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}
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}
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@ -23,7 +23,12 @@ package ca.uhn.fhir.jpa.dao.data;
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import org.springframework.data.jpa.repository.JpaRepository;
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import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamString;
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import org.springframework.data.jpa.repository.Query;
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import org.springframework.data.repository.query.Param;
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public interface IResourceIndexedSearchParamStringDao extends JpaRepository<ResourceIndexedSearchParamString, Long> {
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// nothing yet
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@Query("select count(*) from ResourceIndexedSearchParamString t WHERE t.myResourcePid = :resid")
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int countForResourceId(@Param("resid") Long theResourcePid);
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}
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@ -20,10 +20,14 @@ package ca.uhn.fhir.jpa.dao.data;
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* #L%
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*/
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import org.springframework.data.jpa.repository.JpaRepository;
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import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamToken;
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import org.springframework.data.jpa.repository.JpaRepository;
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import org.springframework.data.jpa.repository.Query;
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import org.springframework.data.repository.query.Param;
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public interface IResourceIndexedSearchParamTokenDao extends JpaRepository<ResourceIndexedSearchParamToken, Long> {
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// nothing yet
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@Query("select count(*) from ResourceIndexedSearchParamToken t WHERE t.myResourcePid = :resid")
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int countForResourceId(@Param("resid") Long theResourcePid);
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}
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@ -1,10 +1,7 @@
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package ca.uhn.fhir.jpa.dao.r4;
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import ca.uhn.fhir.jpa.dao.*;
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import ca.uhn.fhir.jpa.entity.ResourceEncodingEnum;
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import ca.uhn.fhir.jpa.entity.ResourceHistoryTable;
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import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamString;
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import ca.uhn.fhir.jpa.entity.TagTypeEnum;
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import ca.uhn.fhir.jpa.entity.*;
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import ca.uhn.fhir.model.api.Include;
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import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
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import ca.uhn.fhir.model.valueset.BundleEntrySearchModeEnum;
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@ -152,6 +149,42 @@ public class FhirResourceDaoR4Test extends BaseJpaR4Test {
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return retVal;
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}
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@Test
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public void testDeletedResourcesAreReindexed() {
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myDaoConfig.setSchedulingDisabled(true);
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Patient pt1 = new Patient();
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pt1.setActive(true);
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pt1.addName().setFamily("FAM");
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IIdType id1 = myPatientDao.create(pt1).getId().toUnqualifiedVersionless();
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runInTransaction(()->{
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assertThat(myResourceIndexedSearchParamTokenDao.countForResourceId(id1.getIdPartAsLong()), greaterThan(0));
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});
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runInTransaction(()->{
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Optional<ResourceTable> tableOpt = myResourceTableDao.findById(id1.getIdPartAsLong());
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assertTrue(tableOpt.isPresent());
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ResourceTable table = tableOpt.get();
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table.setIndexStatus(null);
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table.setDeleted(new Date());
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});
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mySystemDao.performReindexingPass(1000);
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mySystemDao.performReindexingPass(1000);
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runInTransaction(()->{
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Optional<ResourceTable> tableOpt = myResourceTableDao.findById(id1.getIdPartAsLong());
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assertTrue(tableOpt.isPresent());
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assertEquals(BaseHapiFhirDao.INDEX_STATUS_INDEXED, tableOpt.get().getIndexStatus().longValue());
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assertThat(myResourceIndexedSearchParamTokenDao.countForResourceId(id1.getIdPartAsLong()), not(greaterThan(0)));
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});
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}
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@Test
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public void testCantSearchForDeletedResourceByLanguageOrTag() {
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String methodName = "testCantSearchForDeletedResourceByLanguageOrTag";
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@ -1,9 +1,11 @@
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package ca.uhn.fhir.jpa.dao.r4;
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import ca.uhn.fhir.jpa.dao.BaseHapiFhirDao;
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import ca.uhn.fhir.jpa.dao.DaoConfig;
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import ca.uhn.fhir.jpa.dao.SearchBuilder;
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import ca.uhn.fhir.jpa.dao.SearchParameterMap;
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import ca.uhn.fhir.jpa.entity.ResourceIndexedCompositeStringUnique;
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import ca.uhn.fhir.jpa.entity.ResourceTable;
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import ca.uhn.fhir.jpa.search.JpaRuntimeSearchParam;
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import ca.uhn.fhir.jpa.util.JpaConstants;
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import ca.uhn.fhir.rest.api.server.IBundleProvider;
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@ -27,6 +29,7 @@ import org.springframework.transaction.support.TransactionTemplate;
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import javax.annotation.Nonnull;
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import java.util.Collections;
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import java.util.List;
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import java.util.Optional;
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import java.util.UUID;
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import static org.hamcrest.Matchers.*;
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@ -134,6 +134,10 @@
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A crash was fixed when deleting a ConceptMap resource in the
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JPA server. This crash was a regression in HAPI FHIR 3.4.0.
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</action>
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<action type="fix">
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A crash in the JPA server when performing a manual reindex of a deleted resource
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was fixed.
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</action>
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</release>
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<release version="3.4.0" date="2018-05-28">
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<action type="add">
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