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Fix encoding issue on narrative blocks

This commit is contained in:
James Agnew 2014-08-28 09:44:04 -04:00
parent d205075e35
commit 46fbfeb66e
22 changed files with 352 additions and 93 deletions
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8
hapi-fhir-base/pom.xml
View File

@ -635,6 +635,14 @@
</reportSet>
</reportSets>
</plugin>
<plugin>
<groupId>org.apache.maven.plugins</groupId>
<artifactId>maven-linkcheck-plugin</artifactId>
<version>1.1</version>
<configuration>
<forceSite>false</forceSite>
</configuration>
</plugin>
</plugins>
</reporting>
</profile>

5
hapi-fhir-base/src/changes/changes.xml
View File

@ -131,6 +131,11 @@
java Object class. Thanks to Laurie Macdougall-Sookraj of UHN for
reporting!
</action>
<action type="fix">
Text/narrative blocks that were created with a non-empty
namespace prefix (e.g. &lt;xhtml:div xmlns:xhtml="..."&gt;...&lt;/xhtml:div&gt;)
failed to encode correctly (prefix was missing in encoded resource)
</action>
</release>
<release version="0.5" date="2014-Jul-30">
<action type="add">

3
hapi-fhir-base/src/main/java/ca/uhn/fhir/model/primitive/IdDt.java
View File

@ -259,6 +259,9 @@ public class IdDt extends BasePrimitive<String> {
* "https://"
*/
public boolean isAbsolute() {
if (StringUtils.isBlank(getValue())) {
return false;
}
return UrlUtil.isAbsolute(getValue());
}

10
hapi-fhir-base/src/main/java/ca/uhn/fhir/parser/XmlParser.java
View File

@ -652,7 +652,8 @@ public class XmlParser extends BaseParser implements IParser {
break;
case XMLStreamConstants.CHARACTERS:
case XMLStreamConstants.SPACE:
theEventWriter.writeCharacters(((Characters) event).getData());
String data = ((Characters) event).getData();
theEventWriter.writeCharacters(data);
break;
case XMLStreamConstants.COMMENT:
theEventWriter.writeComment(((Comment) event).getText());
@ -671,15 +672,18 @@ public class XmlParser extends BaseParser implements IParser {
case XMLStreamConstants.START_ELEMENT:
StartElement se = event.asStartElement();
if (firstEvent) {
theEventWriter.writeStartElement(se.getName().getLocalPart());
if (StringUtils.isBlank(se.getName().getPrefix())) {
String namespaceURI = se.getName().getNamespaceURI();
if (StringUtils.isBlank(namespaceURI)) {
namespaceURI = "http://www.w3.org/1999/xhtml";
}
theEventWriter.writeStartElement(se.getName().getLocalPart());
theEventWriter.writeDefaultNamespace(namespaceURI);
} else {
theEventWriter.writeNamespace(se.getName().getPrefix(), se.getName().getNamespaceURI());
String prefix = se.getName().getPrefix();
String namespaceURI = se.getName().getNamespaceURI();
theEventWriter.writeStartElement(prefix, se.getName().getLocalPart(), namespaceURI);
theEventWriter.writeNamespace(prefix, namespaceURI);
}
} else {
if (isBlank(se.getName().getPrefix())) {

2
hapi-fhir-base/src/main/java/ca/uhn/fhir/rest/method/BaseResourceReturningMethodBinding.java
View File

@ -67,10 +67,10 @@ abstract class BaseResourceReturningMethodBinding extends BaseMethodBinding<Obje
set.add(Constants.PARAM_COUNT);
ALLOWED_PARAMS = Collections.unmodifiableSet(set);
}
private MethodReturnTypeEnum myMethodReturnType;
private Class<?> myResourceListCollectionType;
private String myResourceName;
private Class<? extends IResource> myResourceType;
public BaseResourceReturningMethodBinding(Class<? extends IResource> theReturnResourceType, Method theMethod, FhirContext theConetxt, Object theProvider) {

132
hapi-fhir-base/src/main/java/ca/uhn/fhir/validation/FhirValidator.java
View File

@ -27,6 +27,7 @@ import java.util.List;
import org.apache.commons.lang3.Validate;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.OperationOutcome;
@ -55,60 +56,6 @@ public class FhirValidator {
setValidateAgainstStandardSchematron(true);
}
/**
* Should the validator validate the resource against the base schema (the schema provided with the FHIR
* distribution itself)
*/
public boolean isValidateAgainstStandardSchema() {
return haveValidatorOfType(SchemaBaseValidator.class);
}
/**
* Should the validator validate the resource against the base schema (the schema provided with the FHIR
* distribution itself)
*/
public void setValidateAgainstStandardSchema(boolean theValidateAgainstStandardSchema) {
addOrRemoveValidator(theValidateAgainstStandardSchema, SchemaBaseValidator.class, new SchemaBaseValidator());
}
/**
* Should the validator validate the resource against the base schema (the schema provided with the FHIR
* distribution itself)
*/
public boolean isValidateAgainstStandardSchematron() {
return haveValidatorOfType(SchematronBaseValidator.class);
}
/**
* Should the validator validate the resource against the base schematron (the schematron provided with the FHIR
* distribution itself)
*/
public void setValidateAgainstStandardSchematron(boolean theValidateAgainstStandardSchematron) {
addOrRemoveValidator(theValidateAgainstStandardSchematron, SchematronBaseValidator.class, new SchematronBaseValidator());
}
/**
* Validates a resource instance, throwing a {@link ValidationFailureException} if the validation fails
*
* @param theResource The resource to validate
* @throws ValidationFailureException If the validation fails
*/
public void validate(IResource theResource) throws ValidationFailureException {
Validate.notNull(theResource, "theResource must not be null");
ValidationContext<IResource> ctx = ValidationContext.forResource(myContext, theResource);
for (IValidator next : myValidators) {
next.validateResource(ctx);
}
OperationOutcome oo = ctx.getOperationOutcome();
if (oo != null && oo.getIssue().size() > 0) {
throw new ValidationFailureException(oo.getIssueFirstRep().getDetails().getValue(), oo);
}
}
private void addOrRemoveValidator(boolean theValidateAgainstStandardSchema, Class<? extends IValidator> type, IValidator instance) {
if (theValidateAgainstStandardSchema) {
boolean found = haveValidatorOfType(type);
@ -135,4 +82,81 @@ public class FhirValidator {
return found;
}
/**
* Should the validator validate the resource against the base schema (the schema provided with the FHIR
* distribution itself)
*/
public boolean isValidateAgainstStandardSchema() {
return haveValidatorOfType(SchemaBaseValidator.class);
}
/**
* Should the validator validate the resource against the base schema (the schema provided with the FHIR
* distribution itself)
*/
public boolean isValidateAgainstStandardSchematron() {
return haveValidatorOfType(SchematronBaseValidator.class);
}
/**
* Should the validator validate the resource against the base schema (the schema provided with the FHIR
* distribution itself)
*/
public void setValidateAgainstStandardSchema(boolean theValidateAgainstStandardSchema) {
addOrRemoveValidator(theValidateAgainstStandardSchema, SchemaBaseValidator.class, new SchemaBaseValidator());
}
/**
* Should the validator validate the resource against the base schematron (the schematron provided with the FHIR
* distribution itself)
*/
public void setValidateAgainstStandardSchematron(boolean theValidateAgainstStandardSchematron) {
addOrRemoveValidator(theValidateAgainstStandardSchematron, SchematronBaseValidator.class, new SchematronBaseValidator());
}
/**
* Validates a bundle instance, throwing a {@link ValidationFailureException} if the validation fails. This
* validation includes validation of all resources in the bundle.
*
* @param theResource The resource to validate
* @throws ValidationFailureException If the validation fails
*/
public void validate(Bundle theBundle) {
Validate.notNull(theBundle, "theBundle must not be null");
ValidationContext<Bundle> ctx = ValidationContext.forBundle(myContext, theBundle);
for (IValidator next : myValidators) {
next.validateBundle(ctx);
}
OperationOutcome oo = ctx.getOperationOutcome();
if (oo != null && oo.getIssue().size() > 0) {
throw new ValidationFailureException(oo);
}
}
/**
* Validates a resource instance, throwing a {@link ValidationFailureException} if the validation fails
*
* @param theResource The resource to validate
* @throws ValidationFailureException If the validation fails
*/
public void validate(IResource theResource) throws ValidationFailureException {
Validate.notNull(theResource, "theResource must not be null");
ValidationContext<IResource> ctx = ValidationContext.forResource(myContext, theResource);
for (IValidator next : myValidators) {
next.validateResource(ctx);
}
OperationOutcome oo = ctx.getOperationOutcome();
if (oo != null && oo.getIssue().size() > 0) {
throw new ValidationFailureException(oo);
}
}
}

3
hapi-fhir-base/src/main/java/ca/uhn/fhir/validation/IValidator.java
View File

@ -1,5 +1,6 @@
package ca.uhn.fhir.validation;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.api.IResource;
/*
@ -27,4 +28,6 @@ interface IValidator {
void validateResource(ValidationContext<IResource> theCtx);
void validateBundle(ValidationContext<Bundle> theContext);
}

33
hapi-fhir-base/src/main/java/ca/uhn/fhir/validation/SchemaBaseValidator.java
View File

@ -69,15 +69,6 @@ class SchemaBaseValidator implements IValidator {
private Map<String, Schema> myKeyToSchema = new HashMap<String, Schema>();
public void validateBundle(ValidationContext<Bundle> theContext) {
doValidate(theContext, "fhir-atom-single.xsd");
}
@Override
public void validateResource(ValidationContext<IResource> theContext) {
doValidate(theContext, "fhir-single.xsd");
}
private void doValidate(ValidationContext<?> theContext, String schemaName) {
Schema schema = loadSchema("dstu", schemaName);
@ -128,6 +119,16 @@ class SchemaBaseValidator implements IValidator {
return baseSource;
}
@Override
public void validateBundle(ValidationContext<Bundle> theContext) {
doValidate(theContext, "fhir-atom-single.xsd");
}
@Override
public void validateResource(ValidationContext<IResource> theContext) {
doValidate(theContext, "fhir-single.xsd");
}
private static class MyErrorHandler implements org.xml.sax.ErrorHandler {
private ValidationContext<?> myContext;
@ -136,6 +137,13 @@ class SchemaBaseValidator implements IValidator {
myContext = theContext;
}
private void addIssue(SAXParseException theException, IssueSeverityEnum severity) {
Issue issue = myContext.getOperationOutcome().addIssue();
issue.setSeverity(severity);
issue.setDetails(theException.getLocalizedMessage());
issue.addLocation().setValue("Line[" + theException.getLineNumber() + "] Col[" + theException.getColumnNumber() + "]");
}
@Override
public void error(SAXParseException theException) throws SAXException {
addIssue(theException, IssueSeverityEnum.ERROR);
@ -151,13 +159,6 @@ class SchemaBaseValidator implements IValidator {
addIssue(theException, IssueSeverityEnum.WARNING);
}
private void addIssue(SAXParseException theException, IssueSeverityEnum severity) {
Issue issue = myContext.getOperationOutcome().addIssue();
issue.setSeverity(severity);
issue.setDetails(theException.getLocalizedMessage());
issue.addLocation().setValue("Line[" + theException.getLineNumber() + "] Col[" + theException.getColumnNumber() + "]");
}
}
private static final class MyResourceResolver implements LSResourceResolver {

18
hapi-fhir-base/src/main/java/ca/uhn/fhir/validation/SchematronBaseValidator.java
View File

@ -30,6 +30,8 @@ import javax.xml.transform.stream.StreamSource;
import org.oclc.purl.dsdl.svrl.SchematronOutputType;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.api.BundleEntry;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.OperationOutcome.Issue;
import ca.uhn.fhir.model.dstu.valueset.IssueSeverityEnum;
@ -97,10 +99,12 @@ public class SchematronBaseValidator implements IValidator {
return retVal;
}
String pathToBase = "ca/uhn/fhir/model/"+theVersion+"/schema/" + theCtx.getFhirContext().getResourceDefinition(theCtx.getResource()).getBaseDefinition().getName().toLowerCase() + ".sch";
String pathToBase = "ca/uhn/fhir/model/" + theVersion + "/schema/" + theCtx.getFhirContext().getResourceDefinition(theCtx.getResource()).getBaseDefinition().getName().toLowerCase()
+ ".sch";
InputStream baseIs = FhirValidator.class.getClassLoader().getResourceAsStream(pathToBase);
if (baseIs == null) {
throw new ValidationFailureException("No schematron found for resource type: " + theCtx.getFhirContext().getResourceDefinition(theCtx.getResource()).getBaseDefinition().getImplementingClass().getCanonicalName());
throw new ValidationFailureException("No schematron found for resource type: "
+ theCtx.getFhirContext().getResourceDefinition(theCtx.getResource()).getBaseDefinition().getImplementingClass().getCanonicalName());
}
retVal = SchematronResourceSCH.fromClassPath(pathToBase);
@ -109,4 +113,14 @@ public class SchematronBaseValidator implements IValidator {
}
}
@Override
public void validateBundle(ValidationContext<Bundle> theContext) {
for (BundleEntry next : theContext.getResource().getEntries()) {
if (next.getResource() != null) {
ValidationContext<IResource> ctx = ValidationContext.newChild(theContext, next.getResource());
validateResource(ctx);
}
}
}
}

6
hapi-fhir-base/src/main/java/ca/uhn/fhir/validation/ValidationContext.java
View File

@ -79,6 +79,12 @@ class ValidationContext<T> {
});
}
public static ValidationContext<IResource> newChild(ValidationContext<Bundle> theContext, IResource theResource) {
ValidationContext<IResource> retVal = forResource(theContext.getFhirContext(), theResource);
retVal.myOperationOutcome = theContext.getOperationOutcome();
return retVal;
}
private interface IEncoder {
String encode();
}

12
hapi-fhir-base/src/main/java/ca/uhn/fhir/validation/ValidationFailureException.java
View File

@ -32,6 +32,14 @@ public class ValidationFailureException extends RuntimeException {
this(theProblem, IssueSeverityEnum.FATAL, null);
}
private static String toDescription(OperationOutcome theOo) {
StringBuilder b = new StringBuilder();
b.append(theOo.getIssueFirstRep().getDetails().getValue());
b.append(" - ");
b.append(theOo.getIssueFirstRep().getLocationFirstRep().getValue());
return b.toString();
}
public ValidationFailureException(String theProblem, Exception theCause) {
this(theProblem, IssueSeverityEnum.FATAL, theCause);
}
@ -42,8 +50,8 @@ public class ValidationFailureException extends RuntimeException {
myOperationOutcome.addIssue().setSeverity(theSeverity).setDetails(theProblem);
}
public ValidationFailureException(String theProblem, OperationOutcome theOperationOutcome) {
super(theProblem);
public ValidationFailureException(OperationOutcome theOperationOutcome) {
super(toDescription(theOperationOutcome));
myOperationOutcome = theOperationOutcome;
}

2
hapi-fhir-base/src/site/xdoc/doc_logging.xml
View File

@ -104,7 +104,7 @@
<p>
To enable detailed logging of client requests and responses (what URL is being requested, what headers and payload
are being received, etc.), an interceptor may be added to the client which logs each transaction. See
<a href="./doc_rest_client.html#req_resp_logging">Logging Requests and Responses</a> for more information.
<a href="./doc_rest_client_interceptor.html#req_resp_logging">Logging Requests and Responses</a> for more information.
</p>
</section>

3
hapi-fhir-base/src/site/xdoc/doc_rest_client_interceptor.xml
View File

@ -11,6 +11,9 @@
<section name="Client Interceptors">
<macro name="toc">
</macro>
<p>
Both generic clients and annotation-driven clients support
<a href="./apidocs/ca/uhn/fhir/rest/client/IClientInterceptor.html">Client Interceptors</a>,

81
hapi-fhir-base/src/test/java/ca/uhn/fhir/context/NameChanges.java Normal file
View File

@ -0,0 +1,81 @@
package ca.uhn.fhir.context;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import org.junit.Test;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.valueset.SearchParamTypeEnum;
import com.google.common.collect.ImmutableSet;
import com.google.common.reflect.ClassPath;
import com.google.common.reflect.ClassPath.ClassInfo;
public class NameChanges {
@SuppressWarnings("unchecked")
@Test
public void testNameChanges() throws IOException, ClassNotFoundException {
FhirContext ctx = new FhirContext();
ImmutableSet<ClassInfo> names = ClassPath.from(getClass().getClassLoader()).getTopLevelClasses(Patient.class.getPackage().getName());
List<String> changes = new ArrayList<String>();
for (ClassInfo classInfo : names) {
RuntimeResourceDefinition def = ctx.getResourceDefinition((Class<? extends IResource>) Class.forName(classInfo.getName()));
for (RuntimeSearchParam nextParam : def.getSearchParams()) {
if (nextParam.getParamType() == SearchParamTypeEnum.COMPOSITE) {
continue;
}
String name = nextParam.getName();
if (name.contains("[x]")) {
continue;
}
if (name.startsWith("_")) {
continue; // _id and _language
}
String path = nextParam.getPath();
if (path.contains(" | ")) {
changes.add(def.getName() + ": " + name + " has multiple paths so there is no obvious name (" + nextParam.getDescription() + ")");
continue;
}
path = path.substring(path.indexOf('.') + 1);
StringBuilder b = new StringBuilder();
for (int i = 0; i < path.length(); i++) {
char nextChar = path.charAt(i);
if (Character.isUpperCase(nextChar)) {
b.append('-');
}else if (nextChar == '.') {
b.append('-');
continue;
}
b.append(Character.toLowerCase(nextChar));
}
if (name.equals(b.toString())==false) {
changes.add(def.getName() + "," + name + "," + b + "," + nextParam.getDescription());
}
}
}
System.out.println("Resource,old name,new name,description");
for (String next : changes) {
System.out.println(next);
}
}
}

42
hapi-fhir-base/src/test/java/ca/uhn/fhir/parser/JsonParserTest.java
View File

@ -1,9 +1,17 @@
package ca.uhn.fhir.parser;
import static org.hamcrest.Matchers.*;
import static org.junit.Assert.*;
import static org.mockito.Matchers.*;
import static org.mockito.Mockito.*;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.not;
import static org.hamcrest.Matchers.stringContainsInOrder;
import static org.junit.Assert.assertArrayEquals;
import static org.junit.Assert.assertEquals;
import static org.junit.Assert.assertNotEquals;
import static org.junit.Assert.assertNull;
import static org.junit.Assert.assertThat;
import static org.junit.Assert.fail;
import static org.mockito.Matchers.eq;
import static org.mockito.Mockito.mock;
import static org.mockito.Mockito.when;
import java.io.IOException;
import java.io.OutputStreamWriter;
@ -28,7 +36,6 @@ import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.api.BundleEntry;
import ca.uhn.fhir.model.api.ExtensionDt;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
import ca.uhn.fhir.model.api.TagList;
import ca.uhn.fhir.model.api.annotation.Child;
@ -63,6 +70,31 @@ public class JsonParserTest {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(JsonParserTest.class);
private static FhirContext ourCtx;
@Test
public void testEncodeNarrativeBlockInBundle() {
Patient p = new Patient();
p.addIdentifier("foo", "bar");
p.getText().setStatus(NarrativeStatusEnum.GENERATED);
p.getText().setDiv("<div>hello</div>");
Bundle b = new Bundle();
b.getTotalResults().setValue(123);
b.addEntry().setResource(p);
String out = ourCtx.newJsonParser().setPrettyPrint(true).encodeBundleToString(b);
ourLog.info(out);
assertThat(out, containsString("<div>hello</div>"));
p.getText().setDiv("<xhtml:div xmlns:xhtml=\"http://www.w3.org/1999/xhtml\">hello</xhtml:div>");
out = ourCtx.newJsonParser().setPrettyPrint(true).encodeBundleToString(b);
ourLog.info(out);
// Backslashes need to be escaped because they are in a JSON value
assertThat(out, containsString("<xhtml:div xmlns:xhtml=\\\"http://www.w3.org/1999/xhtml\\\">hello</xhtml:div>"));
}
@Test
public void testEncodingNullExtension() {
Patient p = new Patient();

23
hapi-fhir-base/src/test/java/ca/uhn/fhir/parser/XmlParserTest.java
View File

@ -282,6 +282,29 @@ public class XmlParserTest {
}
}
@Test
public void testEncodeNarrativeBlockInBundle() {
Patient p = new Patient();
p.addIdentifier("foo", "bar");
p.getText().setStatus(NarrativeStatusEnum.GENERATED);
p.getText().setDiv("<div>hello</div>");
Bundle b = new Bundle();
b.getTotalResults().setValue(123);
b.addEntry().setResource(p);
String out = ourCtx.newXmlParser().setPrettyPrint(true).encodeBundleToString(b);
ourLog.info(out);
assertThat(out, containsString("<div xmlns=\"http://www.w3.org/1999/xhtml\">hello</div>"));
p.getText().setDiv("<xhtml:div xmlns:xhtml=\"http://www.w3.org/1999/xhtml\">hello</xhtml:div>");
out = ourCtx.newXmlParser().setPrettyPrint(true).encodeBundleToString(b);
ourLog.info(out);
assertThat(out, containsString("<xhtml:div xmlns:xhtml=\"http://www.w3.org/1999/xhtml\">hello</xhtml:div>"));
}
@Test
public void testEncodePrettyPrint() throws DataFormatException {

32
hapi-fhir-base/src/test/java/ca/uhn/fhir/validation/ResourceValidatorTest.java
View File

@ -9,6 +9,7 @@ import org.apache.commons.io.IOUtils;
import org.junit.Test;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.model.api.Bundle;
import ca.uhn.fhir.model.dstu.resource.Patient;
import ca.uhn.fhir.model.dstu.valueset.ContactSystemEnum;
@ -18,7 +19,7 @@ public class ResourceValidatorTest {
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(ResourceValidatorTest.class);
@Test
public void testSchemaValidator() throws IOException {
public void testSchemaResourceValidator() throws IOException {
String res = IOUtils.toString(getClass().getClassLoader().getResourceAsStream("patient-example-dicom.xml"));
Patient p = ourCtx.newXmlParser().parseResource(Patient.class, res);
@ -39,12 +40,33 @@ public class ResourceValidatorTest {
}
}
@Test
public void testSchemaBundleValidator() throws IOException {
String res = IOUtils.toString(getClass().getClassLoader().getResourceAsStream("atom-document-large.xml"));
Bundle b = ourCtx.newXmlParser().parseBundle(res);
FhirValidator val = ourCtx.newValidator();
val.setValidateAgainstStandardSchema(true);
val.setValidateAgainstStandardSchematron(false);
ourLog.info(ourCtx.newXmlParser().setPrettyPrint(false).encodeBundleToString(b).substring(15600));
val.validate(b);
// b.getAnimal().getBreed().setText("The Breed");
// try {
// val.validate(b);
// fail();
// } catch (ValidationFailureException e) {
// ourLog.info(ourCtx.newXmlParser().setPrettyPrint(true).encodeResourceToString(e.getOperationOutcome()));
// assertEquals(1, e.getOperationOutcome().getIssue().size());
// assertThat(e.getOperationOutcome().getIssueFirstRep().getDetails().getValue(), containsString("Invalid content was found starting with element 'breed'"));
// }
}
@Test
public void testSchematronValidator() throws IOException {
// System.setProperty("javax.xml.transform.TransformerFactory", "org.apache.xalan.processor.TransformerFactoryImpl ");
// System.setProperty("javax.xml.transform.TransformerFactory", "net.sf.saxon.TransformerFactoryImpl");
public void testSchematronResourceValidator() throws IOException {
String res = IOUtils.toString(getClass().getClassLoader().getResourceAsStream("patient-example-dicom.xml"));
Patient p = ourCtx.newXmlParser().parseResource(Patient.class, res);

5
hapi-fhir-base/src/test/resources/atom-document-large.xml
View File

@ -216,6 +216,7 @@
<Patient id="cid:b01227b1-2701-4f9f-93b3-428146aa3ed3" xmlns="http://hl7.org/fhir">
<language value="en-US" />
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Parkerson, Parkie</div>
</text>
<identifier>
@ -262,6 +263,7 @@
<Patient id="cid:dd85a42b-eab0-4863-b4e4-2296e8369e9a" xmlns="http://hl7.org/fhir">
<language value="en-US" />
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Parkerson, Parkie</div>
</text>
<identifier>
@ -339,6 +341,7 @@
<Patient xmlns="http://hl7.org/fhir">
<language value="en-US" />
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Parkerson, Parkie</div>
</text>
<identifier>
@ -385,6 +388,7 @@
<Patient xmlns="http://hl7.org/fhir">
<language value="en-US" />
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Parkerson, Parkie</div>
</text>
<identifier>
@ -431,6 +435,7 @@
<Patient xmlns="http://hl7.org/fhir">
<language value="en-US" />
<text>
<status value="generated"/>
<div xmlns="http://www.w3.org/1999/xhtml">Parkerson, Parkie</div>
</text>
<identifier>

2
hapi-fhir-jpaserver-uhnfhirtest/.settings/org.eclipse.wst.common.component
View File

@ -12,7 +12,7 @@
<dependent-module archiveName="hapi-fhir-base-0.6-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base">
<dependency-type>uses</dependency-type>
</dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/var/M2_REPO/ca/uhn/hapi/fhir/hapi-fhir-testpage-overlay/0.6-SNAPSHOT/hapi-fhir-testpage-overlay-0.6-SNAPSHOT.war?unpackFolder=target/m2e-wtp/overlays&amp;includes=**/**&amp;excludes=META-INF/MANIFEST.MF">
<dependent-module deploy-path="/" handle="module:/overlay/prj/hapi-fhir-testpage-overlay?includes=**/**&amp;excludes=META-INF/MANIFEST.MF">
<dependency-type>consumes</dependency-type>
</dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/slf/?includes=**/**&amp;excludes=META-INF/MANIFEST.MF">

11
pom.xml
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@ -22,6 +22,17 @@
<inceptionYear>2014</inceptionYear>
<issueManagement>
<system>GitHub</system>
<url>https://github.com/jamesagnew/hapi-fhir/issues/</url>
</issueManagement>
<scm>
<connection>scm:git:git@github.com:jamesagnew/hapi-fhir.git</connection>
<url>scm:git:git@github.com:jamesagnew/hapi-fhir.git</url>
<developerConnection>scm:git:git@github.com:jamesagnew/hapi-fhir.git</developerConnection>
</scm>
<description>
</description>

2
restful-server-example/.settings/org.eclipse.wst.common.component
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@ -6,7 +6,7 @@
<dependent-module archiveName="hapi-fhir-base-0.6-SNAPSHOT.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/hapi-fhir-base/hapi-fhir-base">
<dependency-type>uses</dependency-type>
</dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/var/M2_REPO/ca/uhn/hapi/fhir/hapi-fhir-testpage-overlay/0.6-SNAPSHOT/hapi-fhir-testpage-overlay-0.6-SNAPSHOT.war?unpackFolder=target/m2e-wtp/overlays&amp;includes=**/**&amp;excludes=META-INF/MANIFEST.MF">
<dependent-module deploy-path="/" handle="module:/overlay/prj/hapi-fhir-testpage-overlay?includes=**/**&amp;excludes=META-INF/MANIFEST.MF">
<dependency-type>consumes</dependency-type>
</dependent-module>
<dependent-module deploy-path="/" handle="module:/overlay/slf/?includes=**/**&amp;excludes=META-INF/MANIFEST.MF">

6
restful-server-example/pom.xml
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@ -92,6 +92,12 @@
<build>
<!--
Tells Maven to name the generated WAR file as
restful-server-example.war
-->
<finalName>restful-server-example</finalName>
<!--
The following is not required for the application to build, but
allows you to test it by issuing "mvn jetty:run" from the command