JPA server now correctly suppresses contents of deleted resources
in history
This commit is contained in:
jamesagnew
parent
e2bc9336f9
commit
48ee2cbee8
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@ -19,8 +19,7 @@ package ca.uhn.fhir.model.api;
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* limitations under the License.
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* #L%
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*/
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import static org.apache.commons.lang3.StringUtils.*;
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import static org.apache.commons.lang3.StringUtils.isNotBlank;
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import java.io.Serializable;
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import java.util.ArrayList;
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@ -35,7 +34,6 @@ import ca.uhn.fhir.model.base.composite.BaseCodingDt;
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import ca.uhn.fhir.model.primitive.DecimalDt;
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import ca.uhn.fhir.model.primitive.IdDt;
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import ca.uhn.fhir.model.primitive.InstantDt;
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import ca.uhn.fhir.model.primitive.StringDt;
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import ca.uhn.fhir.model.valueset.BundleEntrySearchModeEnum;
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import ca.uhn.fhir.model.valueset.BundleEntryTransactionMethodEnum;
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import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
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@ -74,6 +72,8 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<InstantDt> DELETED_AT = new ResourceMetadataKeyEnum<InstantDt>("DELETED_AT") {
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private static final long serialVersionUID = 1L;
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@Override
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public InstantDt get(IResource theResource) {
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return getInstantFromMetadataOrNullIfNone(theResource.getResourceMetadata(), DELETED_AT);
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@ -96,6 +96,8 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<DecimalDt> ENTRY_SCORE = new ResourceMetadataKeyEnum<DecimalDt>("ENTRY_SCORE") {
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private static final long serialVersionUID = 1L;
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@Override
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public DecimalDt get(IResource theResource) {
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return getDecimalFromMetadataOrNullIfNone(theResource.getResourceMetadata(), ENTRY_SCORE);
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@ -119,6 +121,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<BundleEntrySearchModeEnum> ENTRY_SEARCH_MODE = new ResourceMetadataKeyEnum<BundleEntrySearchModeEnum>("ENTRY_SEARCH_MODE") {
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private static final long serialVersionUID = 1L;
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@Override
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public BundleEntrySearchModeEnum get(IResource theResource) {
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return getEnumFromMetadataOrNullIfNone(theResource.getResourceMetadata(), ENTRY_SEARCH_MODE, BundleEntrySearchModeEnum.class, BundleEntrySearchModeEnum.VALUESET_BINDER);
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@ -144,6 +147,8 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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*/
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public static final ResourceMetadataKeyEnum<BundleEntryTransactionMethodEnum> ENTRY_TRANSACTION_METHOD = new ResourceMetadataKeyEnum<BundleEntryTransactionMethodEnum>(
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"ENTRY_TRANSACTION_OPERATION") {
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private static final long serialVersionUID = 1L;
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@Override
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public BundleEntryTransactionMethodEnum get(IResource theResource) {
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return getEnumFromMetadataOrNullIfNone(theResource.getResourceMetadata(), ENTRY_TRANSACTION_METHOD, BundleEntryTransactionMethodEnum.class,
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@ -165,6 +170,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<String> LINK_ALTERNATE = new ResourceMetadataKeyEnum<String>("LINK_ALTERNATE") {
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private static final long serialVersionUID = 1L;
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@Override
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public String get(IResource theResource) {
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return getStringFromMetadataOrNullIfNone(theResource.getResourceMetadata(), LINK_ALTERNATE);
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@ -185,6 +191,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<String> LINK_SEARCH = new ResourceMetadataKeyEnum<String>("LINK_SEARCH") {
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private static final long serialVersionUID = 1L;
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@Override
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public String get(IResource theResource) {
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return getStringFromMetadataOrNullIfNone(theResource.getResourceMetadata(), LINK_SEARCH);
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@ -203,6 +210,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<IdDt> PREVIOUS_ID = new ResourceMetadataKeyEnum<IdDt>("PREVIOUS_ID") {
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private static final long serialVersionUID = 1L;
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@Override
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public IdDt get(IResource theResource) {
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return getIdFromMetadataOrNullIfNone(theResource.getResourceMetadata(), PREVIOUS_ID);
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@ -222,6 +230,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<List<IdDt>> PROFILES = new ResourceMetadataKeyEnum<List<IdDt>>("PROFILES") {
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private static final long serialVersionUID = 1L;
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@Override
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public List<IdDt> get(IResource theResource) {
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return getIdListFromMetadataOrNullIfNone(theResource.getResourceMetadata(), PROFILES);
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@ -245,6 +254,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* @see InstantDt
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*/
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public static final ResourceMetadataKeyEnum<InstantDt> PUBLISHED = new ResourceMetadataKeyEnum<InstantDt>("PUBLISHED") {
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private static final long serialVersionUID = 1L;
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@Override
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public InstantDt get(IResource theResource) {
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return getInstantFromMetadataOrNullIfNone(theResource.getResourceMetadata(), PUBLISHED);
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@ -257,6 +267,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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};
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public static final ResourceMetadataKeyEnum<List<BaseCodingDt>> SECURITY_LABELS = new ResourceMetadataKeyEnum<List<BaseCodingDt>>("SECURITY_LABELS") {
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private static final long serialVersionUID = 1L;
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@Override
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public List<BaseCodingDt> get(IResource resource) {
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Object obj = resource.getResourceMetadata().get(SECURITY_LABELS);
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@ -264,6 +275,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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return null;
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} else {
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try {
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@SuppressWarnings("unchecked")
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List<BaseCodingDt> securityLabels = (List<BaseCodingDt>) obj;
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if (securityLabels.isEmpty())
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return null;
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@ -294,6 +306,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* @see TagList
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*/
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public static final ResourceMetadataKeyEnum<TagList> TAG_LIST = new ResourceMetadataKeyEnum<TagList>("TAG_LIST") {
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private static final long serialVersionUID = 1L;
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@Override
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public TagList get(IResource theResource) {
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Object retValObj = theResource.getResourceMetadata().get(TAG_LIST);
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@ -323,6 +336,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<String> TITLE = new ResourceMetadataKeyEnum<String>("TITLE") {
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private static final long serialVersionUID = 1L;
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@Override
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public String get(IResource theResource) {
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return getStringFromMetadataOrNullIfNone(theResource.getResourceMetadata(), TITLE);
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@ -344,6 +358,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* @see InstantDt
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*/
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public static final ResourceMetadataKeyEnum<InstantDt> UPDATED = new ResourceMetadataKeyEnum<InstantDt>("UPDATED") {
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private static final long serialVersionUID = 1L;
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@Override
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public InstantDt get(IResource theResource) {
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return getInstantFromMetadataOrNullIfNone(theResource.getResourceMetadata(), UPDATED);
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@ -362,6 +377,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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* </p>
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*/
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public static final ResourceMetadataKeyEnum<String> VERSION = new ResourceMetadataKeyEnum<String>("VERSION") {
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private static final long serialVersionUID = 1L;
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@Override
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public String get(IResource theResource) {
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return getStringFromMetadataOrNullIfNone(theResource.getResourceMetadata(), VERSION);
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@ -383,6 +399,7 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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*/
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@Deprecated
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public static final ResourceMetadataKeyEnum<IdDt> VERSION_ID = new ResourceMetadataKeyEnum<IdDt>("VERSION_ID") {
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private static final long serialVersionUID = 1L;
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@Override
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public IdDt get(IResource theResource) {
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return getIdFromMetadataOrNullIfNone(theResource.getResourceMetadata(), VERSION_ID);
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@ -519,26 +536,6 @@ public abstract class ResourceMetadataKeyEnum<T> implements Serializable {
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+ InstantDt.class.getCanonicalName());
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}
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private static StringDt getStringDtFromMetadataOrNullIfNone(Map<ResourceMetadataKeyEnum<?>, Object> theResourceMetadata, ResourceMetadataKeyEnum<StringDt> theKey) {
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Object retValObj = theResourceMetadata.get(theKey);
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if (retValObj == null) {
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return null;
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} else if (retValObj instanceof String) {
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if (StringUtils.isBlank((String) retValObj)) {
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return null;
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}
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return new StringDt((String) retValObj);
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} else if (retValObj instanceof StringDt) {
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if (((StringDt) retValObj).isEmpty()) {
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return null;
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} else {
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return (StringDt) retValObj;
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}
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}
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throw new InternalErrorException("Found an object of type '" + retValObj.getClass().getCanonicalName() + "' in resource metadata for key " + theKey.name() + " - Expected "
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+ InstantDt.class.getCanonicalName());
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}
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private static String getStringFromMetadataOrNullIfNone(Map<ResourceMetadataKeyEnum<?>, Object> theResourceMetadata, ResourceMetadataKeyEnum<String> theKey) {
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Object retValObj = theResourceMetadata.get(theKey);
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if (retValObj == null) {
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@ -498,7 +498,11 @@ public abstract class BaseParser implements IParser {
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List<IBase> entryResources = entryDef.getChildByName("resource").getAccessor().getValues(nextEntry);
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if (entryResources != null && entryResources.size() > 0) {
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IBaseResource res = (IBaseResource) entryResources.get(0);
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String versionId = res.getIdElement().getVersionIdPart();
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res.setId(value.getValueAsString());
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if (isNotBlank(versionId) && res.getIdElement().hasVersionIdPart() == false) {
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res.setId(res.getIdElement().withVersion(versionId));
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}
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}
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}
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}
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@ -100,6 +100,7 @@ import ca.uhn.fhir.model.base.composite.BaseResourceReferenceDt;
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import ca.uhn.fhir.model.dstu2.composite.MetaDt;
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import ca.uhn.fhir.model.primitive.IdDt;
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import ca.uhn.fhir.model.primitive.InstantDt;
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import ca.uhn.fhir.model.valueset.BundleEntryTransactionMethodEnum;
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import ca.uhn.fhir.parser.DataFormatException;
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import ca.uhn.fhir.parser.IParser;
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import ca.uhn.fhir.rest.api.RestOperationTypeEnum;
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@ -940,6 +941,7 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
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return toResource(type.getImplementingClass(), theEntity);
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}
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@SuppressWarnings("unchecked")
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protected <R extends IBaseResource> R toResource(Class<R> theResourceType, BaseHasResource theEntity) {
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String resourceText = null;
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switch (theEntity.getEncoding()) {
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@ -975,7 +977,15 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
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ourLog.error(msg, e);
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throw new DataFormatException(msg, e);
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}
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IResource res = (IResource) retVal;
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if (theEntity.getDeleted() != null) {
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res = (IResource) myContext.getResourceDefinition(theResourceType).newInstance();
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retVal = (R) res;
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ResourceMetadataKeyEnum.DELETED_AT.put(res, new InstantDt(theEntity.getDeleted()));
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ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.put(res, BundleEntryTransactionMethodEnum.DELETE);
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}
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res.setId(theEntity.getIdDt());
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ResourceMetadataKeyEnum.VERSION.put(res, Long.toString(theEntity.getVersion()));
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@ -986,10 +996,6 @@ public abstract class BaseHapiFhirDao<T extends IBaseResource> implements IDao {
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ResourceMetadataKeyEnum.TITLE.put(res, theEntity.getTitle());
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}
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if (theEntity.getDeleted() != null) {
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ResourceMetadataKeyEnum.DELETED_AT.put(res, new InstantDt(theEntity.getDeleted()));
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}
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Collection<? extends BaseTag> tags = theEntity.getTags();
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if (theEntity.isHasTags()) {
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TagList tagList = new TagList();
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@ -397,8 +397,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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return processMatchUrl(theMatchUrl, getResourceType());
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}
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private boolean addPredicateMissingFalseIfPresent(CriteriaBuilder theBuilder, String theParamName, Root<? extends BaseResourceIndexedSearchParam> from, List<Predicate> codePredicates,
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IQueryParameterType nextOr) {
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private boolean addPredicateMissingFalseIfPresent(CriteriaBuilder theBuilder, String theParamName, Root<? extends BaseResourceIndexedSearchParam> from, List<Predicate> codePredicates, IQueryParameterType nextOr) {
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boolean missingFalse = false;
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if (nextOr.getMissing() != null) {
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if (nextOr.getMissing().booleanValue() == true) {
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@ -412,8 +411,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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return missingFalse;
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}
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private boolean addPredicateMissingFalseIfPresentForResourceLink(CriteriaBuilder theBuilder, String theParamName, Root<? extends ResourceLink> from, List<Predicate> codePredicates,
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IQueryParameterType nextOr) {
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private boolean addPredicateMissingFalseIfPresentForResourceLink(CriteriaBuilder theBuilder, String theParamName, Root<? extends ResourceLink> from, List<Predicate> codePredicates, IQueryParameterType nextOr) {
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boolean missingFalse = false;
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if (nextOr.getMissing() != null) {
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if (nextOr.getMissing().booleanValue() == true) {
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@ -502,7 +500,6 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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return new HashSet<Long>(q.getResultList());
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}
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private Set<Long> addPredicateUri(String theParamName, Set<Long> thePids, List<? extends IQueryParameterType> theList) {
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if (theList == null || theList.isEmpty()) {
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return thePids;
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@ -556,7 +553,6 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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return new HashSet<Long>(q.getResultList());
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}
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private Set<Long> addPredicateParamMissing(Set<Long> thePids, String joinName, String theParamName, Class<? extends BaseResourceIndexedSearchParam> theParamTable) {
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String resourceType = getContext().getResourceDefinition(getResourceType()).getName();
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@ -1108,8 +1104,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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}
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}
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private Predicate createPredicateString(IQueryParameterType theParameter, String theParamName, CriteriaBuilder theBuilder,
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From<ResourceIndexedSearchParamString, ResourceIndexedSearchParamString> theFrom) {
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private Predicate createPredicateString(IQueryParameterType theParameter, String theParamName, CriteriaBuilder theBuilder, From<ResourceIndexedSearchParamString, ResourceIndexedSearchParamString> theFrom) {
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String rawSearchTerm;
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if (theParameter instanceof TokenParam) {
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TokenParam id = (TokenParam) theParameter;
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@ -1128,8 +1123,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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}
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if (rawSearchTerm.length() > ResourceIndexedSearchParamString.MAX_LENGTH) {
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throw new InvalidRequestException("Parameter[" + theParamName + "] has length (" + rawSearchTerm.length() + ") that is longer than maximum allowed ("
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+ ResourceIndexedSearchParamString.MAX_LENGTH + "): " + rawSearchTerm);
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throw new InvalidRequestException("Parameter[" + theParamName + "] has length (" + rawSearchTerm.length() + ") that is longer than maximum allowed (" + ResourceIndexedSearchParamString.MAX_LENGTH + "): " + rawSearchTerm);
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}
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String likeExpression = normalizeString(rawSearchTerm);
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@ -1143,8 +1137,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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return singleCode;
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}
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private Predicate createPredicateToken(IQueryParameterType theParameter, String theParamName, CriteriaBuilder theBuilder,
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From<ResourceIndexedSearchParamToken, ResourceIndexedSearchParamToken> theFrom) {
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private Predicate createPredicateToken(IQueryParameterType theParameter, String theParamName, CriteriaBuilder theBuilder, From<ResourceIndexedSearchParamToken, ResourceIndexedSearchParamToken> theFrom) {
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String code;
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String system;
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if (theParameter instanceof TokenParam) {
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@ -1164,12 +1157,10 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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}
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if (system != null && system.length() > ResourceIndexedSearchParamToken.MAX_LENGTH) {
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throw new InvalidRequestException(
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"Parameter[" + theParamName + "] has system (" + system.length() + ") that is longer than maximum allowed (" + ResourceIndexedSearchParamToken.MAX_LENGTH + "): " + system);
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throw new InvalidRequestException("Parameter[" + theParamName + "] has system (" + system.length() + ") that is longer than maximum allowed (" + ResourceIndexedSearchParamToken.MAX_LENGTH + "): " + system);
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}
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if (code != null && code.length() > ResourceIndexedSearchParamToken.MAX_LENGTH) {
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throw new InvalidRequestException(
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"Parameter[" + theParamName + "] has code (" + code.length() + ") that is longer than maximum allowed (" + ResourceIndexedSearchParamToken.MAX_LENGTH + "): " + code);
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throw new InvalidRequestException("Parameter[" + theParamName + "] has code (" + code.length() + ") that is longer than maximum allowed (" + ResourceIndexedSearchParamToken.MAX_LENGTH + "): " + code);
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}
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ArrayList<Predicate> singleCodePredicates = (new ArrayList<Predicate>());
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@ -1332,8 +1323,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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if (isNotBlank(theResource.getId().getIdPart())) {
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if (isValidPid(theResource.getId())) {
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throw new UnprocessableEntityException(
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"This server cannot create an entity with a user-specified numeric ID - Client should not specify an ID when creating a new resource, or should include at least one letter in the ID to force a client-defined ID");
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throw new UnprocessableEntityException("This server cannot create an entity with a user-specified numeric ID - Client should not specify an ID when creating a new resource, or should include at least one letter in the ID to force a client-defined ID");
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}
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createForcedIdIfNeeded(entity, theResource.getId());
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@ -1434,8 +1424,13 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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final T current = currentTmp;
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String querySring = "SELECT count(h) FROM ResourceHistoryTable h " + "WHERE h.myResourceId = :PID AND h.myResourceType = :RESTYPE" + " AND h.myUpdated < :END"
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+ (theSince != null ? " AND h.myUpdated >= :SINCE" : "");
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StringBuilder B = new StringBuilder();
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B.append("SELECT count(h) FROM ResourceHistoryTable h ");
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B.append("WHERE h.myResourceId = :PID AND h.myResourceType = :RESTYPE");
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B.append(" AND h.myUpdated < :END");
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B.append((theSince != null ? " AND h.myUpdated >= :SINCE" : ""));
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String querySring = B.toString();
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TypedQuery<Long> countQuery = myEntityManager.createQuery(querySring, Long.class);
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countQuery.setParameter("PID", translateForcedIdToPid(theId));
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countQuery.setParameter("RESTYPE", resourceType);
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@ -1473,8 +1468,11 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
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retVal.add(current);
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}
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|
||||
TypedQuery<ResourceHistoryTable> q = myEntityManager.createQuery("SELECT h FROM ResourceHistoryTable h WHERE h.myResourceId = :PID AND h.myResourceType = :RESTYPE AND h.myUpdated < :END "
|
||||
+ (theSince != null ? " AND h.myUpdated >= :SINCE" : "") + " ORDER BY h.myUpdated ASC", ResourceHistoryTable.class);
|
||||
StringBuilder b = new StringBuilder();
|
||||
b.append("SELECT h FROM ResourceHistoryTable h WHERE h.myResourceId = :PID AND h.myResourceType = :RESTYPE AND h.myUpdated < :END ");
|
||||
b.append((theSince != null ? " AND h.myUpdated >= :SINCE" : ""));
|
||||
b.append(" ORDER BY h.myUpdated DESC");
|
||||
TypedQuery<ResourceHistoryTable> q = myEntityManager.createQuery(b.toString(), ResourceHistoryTable.class);
|
||||
q.setParameter("PID", translateForcedIdToPid(theId));
|
||||
q.setParameter("RESTYPE", resourceType);
|
||||
q.setParameter("END", end.getValue(), TemporalType.TIMESTAMP);
|
||||
|
|
@ -1734,9 +1732,9 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
|
|||
|
||||
myEntityManager.merge(entity);
|
||||
myEntityManager.flush();
|
||||
|
||||
|
||||
ourLog.info("Processed metaDeleteOperation on {} in {}ms", new Object[] { theResourceId.getValue(), w.getMillisAndRestart() });
|
||||
|
||||
|
||||
return metaGetOperation(theResourceId);
|
||||
}
|
||||
|
||||
|
|
@ -1771,7 +1769,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
|
|||
|
||||
retVal.setLastUpdated(entity.getUpdated());
|
||||
retVal.setVersionId(Long.toString(entity.getVersion()));
|
||||
|
||||
|
||||
return retVal;
|
||||
}
|
||||
|
||||
|
|
@ -1853,8 +1851,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
|
|||
|
||||
if (entity == null) {
|
||||
if (theId.hasVersionIdPart()) {
|
||||
TypedQuery<ResourceHistoryTable> q = myEntityManager
|
||||
.createQuery("SELECT t from ResourceHistoryTable t WHERE t.myResourceId = :RID AND t.myResourceType = :RTYP AND t.myResourceVersion = :RVER", ResourceHistoryTable.class);
|
||||
TypedQuery<ResourceHistoryTable> q = myEntityManager.createQuery("SELECT t from ResourceHistoryTable t WHERE t.myResourceId = :RID AND t.myResourceType = :RTYP AND t.myResourceVersion = :RVER", ResourceHistoryTable.class);
|
||||
q.setParameter("RID", pid);
|
||||
q.setParameter("RTYP", myResourceName);
|
||||
q.setParameter("RVER", Long.parseLong(theId.getVersionIdPart()));
|
||||
|
|
@ -2245,7 +2242,8 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
|
|||
}
|
||||
|
||||
/**
|
||||
* If set, the given param will be treated as a secondary primary key, and multiple resources will not be able to share the same value.
|
||||
* If set, the given param will be treated as a secondary primary key, and multiple resources will not be able to
|
||||
* share the same value.
|
||||
*/
|
||||
public void setSecondaryPrimaryKeyParamName(String theSecondaryPrimaryKeyParamName) {
|
||||
mySecondaryPrimaryKeyParamName = theSecondaryPrimaryKeyParamName;
|
||||
|
|
@ -2373,8 +2371,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
|
|||
}
|
||||
|
||||
if (resourceId.hasResourceType() && !resourceId.getResourceType().equals(getResourceName())) {
|
||||
throw new UnprocessableEntityException(
|
||||
"Invalid resource ID[" + entity.getIdDt().toUnqualifiedVersionless() + "] of type[" + entity.getResourceType() + "] - Does not match expected [" + getResourceName() + "]");
|
||||
throw new UnprocessableEntityException("Invalid resource ID[" + entity.getIdDt().toUnqualifiedVersionless() + "] of type[" + entity.getResourceType() + "] - Does not match expected [" + getResourceName() + "]");
|
||||
}
|
||||
|
||||
// Notify interceptors
|
||||
|
|
@ -2409,8 +2406,7 @@ public abstract class BaseHapiFhirResourceDao<T extends IResource> extends BaseH
|
|||
|
||||
private void validateResourceType(BaseHasResource entity) {
|
||||
if (!myResourceName.equals(entity.getResourceType())) {
|
||||
throw new ResourceNotFoundException(
|
||||
"Resource with ID " + entity.getIdDt().getIdPart() + " exists but it is not of type " + myResourceName + ", found resource of type " + entity.getResourceType());
|
||||
throw new ResourceNotFoundException("Resource with ID " + entity.getIdDt().getIdPart() + " exists but it is not of type " + myResourceName + ", found resource of type " + entity.getResourceType());
|
||||
}
|
||||
}
|
||||
|
||||
|
|
|
|||
|
|
@ -1,13 +1,12 @@
|
|||
package ca.uhn.fhir.jpa.dao;
|
||||
|
||||
import static org.apache.commons.lang3.StringUtils.defaultString;
|
||||
import static org.hamcrest.Matchers.contains;
|
||||
import static org.hamcrest.Matchers.containsInAnyOrder;
|
||||
import static org.hamcrest.Matchers.containsInRelativeOrder;
|
||||
import static org.hamcrest.Matchers.containsString;
|
||||
import static org.hamcrest.Matchers.endsWith;
|
||||
import static org.hamcrest.Matchers.greaterThan;
|
||||
import static org.hamcrest.Matchers.hasItem;
|
||||
import static org.hamcrest.Matchers.hasItems;
|
||||
import static org.hamcrest.Matchers.not;
|
||||
import static org.junit.Assert.assertEquals;
|
||||
import static org.junit.Assert.assertFalse;
|
||||
|
|
@ -22,9 +21,9 @@ import static org.mockito.Mockito.reset;
|
|||
import static org.mockito.Mockito.verify;
|
||||
import static org.mockito.Mockito.verifyNoMoreInteractions;
|
||||
|
||||
import java.math.BigDecimal;
|
||||
import java.util.ArrayList;
|
||||
import java.util.Collections;
|
||||
import java.util.Comparator;
|
||||
import java.util.Date;
|
||||
import java.util.HashMap;
|
||||
import java.util.List;
|
||||
|
|
@ -32,12 +31,10 @@ import java.util.Map;
|
|||
import java.util.Set;
|
||||
|
||||
import org.apache.commons.lang3.RandomStringUtils;
|
||||
import org.apache.commons.lang3.StringUtils;
|
||||
import org.hamcrest.Matchers;
|
||||
import org.hamcrest.core.StringContains;
|
||||
import org.hl7.fhir.instance.model.api.IBaseResource;
|
||||
import org.hl7.fhir.instance.model.api.IIdType;
|
||||
import org.junit.Before;
|
||||
import org.junit.Test;
|
||||
import org.mockito.ArgumentCaptor;
|
||||
|
||||
|
|
@ -45,10 +42,9 @@ import ca.uhn.fhir.jpa.entity.ResourceIndexedSearchParamString;
|
|||
import ca.uhn.fhir.jpa.entity.TagTypeEnum;
|
||||
import ca.uhn.fhir.model.api.IQueryParameterType;
|
||||
import ca.uhn.fhir.model.api.IResource;
|
||||
import ca.uhn.fhir.model.api.Include;
|
||||
import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
|
||||
import ca.uhn.fhir.model.api.Tag;
|
||||
import ca.uhn.fhir.model.api.TagList;
|
||||
import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
|
||||
import ca.uhn.fhir.model.base.composite.BaseCodingDt;
|
||||
import ca.uhn.fhir.model.dstu.valueset.QuantityCompararatorEnum;
|
||||
import ca.uhn.fhir.model.dstu2.composite.CodeableConceptDt;
|
||||
|
|
@ -62,15 +58,12 @@ import ca.uhn.fhir.model.dstu2.resource.Bundle;
|
|||
import ca.uhn.fhir.model.dstu2.resource.Device;
|
||||
import ca.uhn.fhir.model.dstu2.resource.DiagnosticReport;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Encounter;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Location;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Observation;
|
||||
import ca.uhn.fhir.model.dstu2.resource.OperationOutcome;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Organization;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Patient;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Practitioner;
|
||||
import ca.uhn.fhir.model.dstu2.resource.Questionnaire;
|
||||
import ca.uhn.fhir.model.dstu2.valueset.AdministrativeGenderEnum;
|
||||
import ca.uhn.fhir.model.dstu2.valueset.ContactPointSystemEnum;
|
||||
import ca.uhn.fhir.model.dstu2.valueset.HTTPVerbEnum;
|
||||
import ca.uhn.fhir.model.dstu2.valueset.IssueSeverityEnum;
|
||||
import ca.uhn.fhir.model.dstu2.valueset.QuantityComparatorEnum;
|
||||
|
|
@ -85,17 +78,12 @@ import ca.uhn.fhir.rest.api.MethodOutcome;
|
|||
import ca.uhn.fhir.rest.api.RestOperationTypeEnum;
|
||||
import ca.uhn.fhir.rest.api.SortOrderEnum;
|
||||
import ca.uhn.fhir.rest.api.SortSpec;
|
||||
import ca.uhn.fhir.rest.param.CompositeParam;
|
||||
import ca.uhn.fhir.rest.param.DateParam;
|
||||
import ca.uhn.fhir.rest.param.DateRangeParam;
|
||||
import ca.uhn.fhir.rest.param.NumberParam;
|
||||
import ca.uhn.fhir.rest.param.QuantityParam;
|
||||
import ca.uhn.fhir.rest.param.ReferenceParam;
|
||||
import ca.uhn.fhir.rest.param.StringParam;
|
||||
import ca.uhn.fhir.rest.param.TokenAndListParam;
|
||||
import ca.uhn.fhir.rest.param.TokenOrListParam;
|
||||
import ca.uhn.fhir.rest.param.TokenParam;
|
||||
import ca.uhn.fhir.rest.param.UriParam;
|
||||
import ca.uhn.fhir.rest.server.Constants;
|
||||
import ca.uhn.fhir.rest.server.IBundleProvider;
|
||||
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
|
||||
|
|
@ -110,26 +98,6 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoDstu2Test.class);
|
||||
|
||||
@Before
|
||||
public void before() {
|
||||
deleteAll(myPatientDao);
|
||||
deleteAll(myObservationDao);
|
||||
deleteAll(myOrganizationDao);
|
||||
deleteAll(myDiagnosticReportDao);
|
||||
deleteAll(myEncounterDao);
|
||||
|
||||
FhirSystemDaoDstu2Test.doDeleteEverything(mySystemDao);
|
||||
reset(myInterceptor);
|
||||
}
|
||||
|
||||
private void deleteAll(IFhirResourceDao<?> dao) {
|
||||
IBundleProvider find = dao.search(new SearchParameterMap());
|
||||
List<IBaseResource> res = find.getResources(0, find.size());
|
||||
for (IBaseResource next : res) {
|
||||
dao.delete(next.getIdElement());
|
||||
}
|
||||
}
|
||||
|
||||
private List<String> extractNames(IBundleProvider theSearch) {
|
||||
ArrayList<String> retVal = new ArrayList<String>();
|
||||
for (IBaseResource next : theSearch.getResources(0, theSearch.size())) {
|
||||
|
|
@ -139,6 +107,46 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
return retVal;
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testReadWithDeletedResource() {
|
||||
String methodName = "testReadWithDeletedResource";
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addName().addFamily(methodName);
|
||||
IIdType id = myPatientDao.create(patient).getId().toVersionless();
|
||||
myPatientDao.delete(id);
|
||||
|
||||
try {
|
||||
myPatientDao.read(id);
|
||||
fail();
|
||||
} catch (ResourceGoneException e) {
|
||||
// good
|
||||
}
|
||||
|
||||
patient.setId(id);
|
||||
patient.addAddress().addLine("AAA");
|
||||
myPatientDao.update(patient);
|
||||
|
||||
Patient p;
|
||||
|
||||
p = myPatientDao.read(id);
|
||||
assertEquals(1, (p).getName().size());
|
||||
|
||||
p = myPatientDao.read(id.withVersion("1"));
|
||||
assertEquals(1, (p).getName().size());
|
||||
|
||||
try {
|
||||
myPatientDao.read(id.withVersion("2"));
|
||||
fail();
|
||||
} catch (ResourceGoneException e) {
|
||||
// good
|
||||
}
|
||||
|
||||
p = myPatientDao.read(id.withVersion("3"));
|
||||
assertEquals(1, (p).getName().size());
|
||||
}
|
||||
|
||||
|
||||
@Test
|
||||
public void testChoiceParamConcept() {
|
||||
Observation o1 = new Observation();
|
||||
|
|
@ -230,8 +238,8 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
@Test
|
||||
public void testCreateOperationOutcome() {
|
||||
/*
|
||||
* If any of this ever fails, it means that one of the OperationOutcome issue severity codes has changed code value across versions. We store the string as a constant, so something will need to
|
||||
* be fixed.
|
||||
* If any of this ever fails, it means that one of the OperationOutcome issue severity codes has changed code
|
||||
* value across versions. We store the string as a constant, so something will need to be fixed.
|
||||
*/
|
||||
assertEquals(org.hl7.fhir.instance.model.OperationOutcome.IssueSeverity.ERROR.toCode(), BaseHapiFhirResourceDao.OO_SEVERITY_ERROR);
|
||||
assertEquals(ca.uhn.fhir.model.dstu.valueset.IssueSeverityEnum.ERROR.getCode(), BaseHapiFhirResourceDao.OO_SEVERITY_ERROR);
|
||||
|
|
@ -709,6 +717,108 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
assertNotEquals(idv1, idv2);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testHistoryWithDeletedResource() throws Exception {
|
||||
String methodName = "testHistoryWithDeletedResource";
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addName().addFamily(methodName);
|
||||
IIdType id = myPatientDao.create(patient).getId().toUnqualifiedVersionless();
|
||||
|
||||
myPatientDao.delete(id);
|
||||
patient.setId(id);
|
||||
myPatientDao.update(patient);
|
||||
|
||||
IBundleProvider history = myPatientDao.history(id, null);
|
||||
assertEquals(3, history.size());
|
||||
List<IBaseResource> entries = history.getResources(0, 3);
|
||||
ourLog.info("" + ResourceMetadataKeyEnum.UPDATED.get((IResource) entries.get(0)));
|
||||
ourLog.info("" + ResourceMetadataKeyEnum.UPDATED.get((IResource) entries.get(1)));
|
||||
ourLog.info("" + ResourceMetadataKeyEnum.UPDATED.get((IResource) entries.get(2)));
|
||||
|
||||
assertEquals(id.withVersion("3"), entries.get(0).getIdElement());
|
||||
assertEquals(id.withVersion("2"), entries.get(1).getIdElement());
|
||||
assertEquals(id.withVersion("1"), entries.get(2).getIdElement());
|
||||
|
||||
assertNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(0)));
|
||||
assertNotNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(1)));
|
||||
assertNull(ResourceMetadataKeyEnum.DELETED_AT.get((IResource) entries.get(2)));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testHistoryOverMultiplePages() throws Exception {
|
||||
String methodName = "testHistoryOverMultiplePages";
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addName().addFamily(methodName);
|
||||
IIdType id = myPatientDao.create(patient).getId().toUnqualifiedVersionless();
|
||||
|
||||
Date middleDate = null;
|
||||
for (int i = 0; i < 100; i++) {
|
||||
if (i == 50) {
|
||||
Thread.sleep(100);
|
||||
middleDate = new Date();
|
||||
Thread.sleep(100);
|
||||
}
|
||||
patient.setId(id);
|
||||
patient.getName().get(0).getFamily().get(0).setValue(methodName + "_i");
|
||||
myPatientDao.update(patient);
|
||||
}
|
||||
|
||||
// By instance
|
||||
IBundleProvider history = myPatientDao.history(id, null);
|
||||
for (int i = 0; i < 100; i++) {
|
||||
String expected = id.withVersion(Integer.toString(101 - i)).getValue();
|
||||
String actual = history.getResources(i, i + 1).get(0).getIdElement().getValue();
|
||||
assertEquals(expected, actual);
|
||||
}
|
||||
|
||||
// By type
|
||||
history = myPatientDao.history(null);
|
||||
for (int i = 0; i < 100; i++) {
|
||||
String expected = id.withVersion(Integer.toString(101 - i)).getValue();
|
||||
String actual = history.getResources(i, i + 1).get(0).getIdElement().getValue();
|
||||
assertEquals(expected, actual);
|
||||
}
|
||||
|
||||
// By server
|
||||
history = mySystemDao.history(null);
|
||||
for (int i = 0; i < 100; i++) {
|
||||
String expected = id.withVersion(Integer.toString(101 - i)).getValue();
|
||||
String actual = history.getResources(i, i + 1).get(0).getIdElement().getValue();
|
||||
assertEquals(expected, actual);
|
||||
}
|
||||
|
||||
/*
|
||||
* With since date
|
||||
*/
|
||||
|
||||
// By instance
|
||||
history = myPatientDao.history(id, middleDate);
|
||||
for (int i = 0; i < 50; i++) {
|
||||
String expected = id.withVersion(Integer.toString(101 - i)).getValue();
|
||||
String actual = history.getResources(i, i + 1).get(0).getIdElement().getValue();
|
||||
assertEquals(expected, actual);
|
||||
}
|
||||
|
||||
// By type
|
||||
history = myPatientDao.history(middleDate);
|
||||
for (int i = 0; i < 50; i++) {
|
||||
String expected = id.withVersion(Integer.toString(101 - i)).getValue();
|
||||
String actual = history.getResources(i, i + 1).get(0).getIdElement().getValue();
|
||||
assertEquals(expected, actual);
|
||||
}
|
||||
|
||||
// By server
|
||||
history = mySystemDao.history(middleDate);
|
||||
for (int i = 0; i < 50; i++) {
|
||||
String expected = id.withVersion(Integer.toString(101 - i)).getValue();
|
||||
String actual = history.getResources(i, i + 1).get(0).getIdElement().getValue();
|
||||
assertEquals(expected, actual);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testIdParam() {
|
||||
Patient patient = new Patient();
|
||||
|
|
@ -1130,21 +1240,21 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
|
||||
id = myPatientDao.create(patient).getId();
|
||||
}
|
||||
|
||||
|
||||
assertTrue(id.hasVersionIdPart());
|
||||
|
||||
|
||||
/*
|
||||
* Create a second version
|
||||
*/
|
||||
|
||||
|
||||
Patient pt = myPatientDao.read(id);
|
||||
pt.addName().addFamily("anotherName");
|
||||
myPatientDao.update(pt);
|
||||
|
||||
|
||||
/*
|
||||
* Meta-Delete on previous version
|
||||
*/
|
||||
|
||||
|
||||
MetaDt meta = new MetaDt();
|
||||
meta.addTag().setSystem("tag_scheme1").setCode("tag_code1");
|
||||
meta.addProfile("http://profile/1");
|
||||
|
|
@ -1156,11 +1266,11 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
assertEquals("tag_code2", newMeta.getTag().get(0).getCode());
|
||||
assertEquals("http://profile/2", newMeta.getProfile().get(0).getValue());
|
||||
assertEquals("seclabel_code2", newMeta.getSecurity().get(0).getCode());
|
||||
|
||||
|
||||
/*
|
||||
* Meta Read on Version
|
||||
*/
|
||||
|
||||
|
||||
meta = myPatientDao.metaGetOperation(id.withVersion("1"));
|
||||
assertEquals(1, meta.getProfile().size());
|
||||
assertEquals(1, meta.getSecurity().size());
|
||||
|
|
@ -1168,7 +1278,7 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
assertEquals("tag_code2", meta.getTag().get(0).getCode());
|
||||
assertEquals("http://profile/2", meta.getProfile().get(0).getValue());
|
||||
assertEquals("seclabel_code2", meta.getSecurity().get(0).getCode());
|
||||
|
||||
|
||||
/*
|
||||
* Meta-read on Version 2
|
||||
*/
|
||||
|
|
@ -1189,7 +1299,7 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
/*
|
||||
* Meta-Add on previous version
|
||||
*/
|
||||
|
||||
|
||||
meta = new MetaDt();
|
||||
meta.addTag().setSystem("tag_scheme1").setCode("tag_code1");
|
||||
meta.addProfile("http://profile/1");
|
||||
|
|
@ -1198,11 +1308,11 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
assertEquals(2, newMeta.getProfile().size());
|
||||
assertEquals(2, newMeta.getSecurity().size());
|
||||
assertEquals(2, newMeta.getTag().size());
|
||||
|
||||
|
||||
/*
|
||||
* Meta Read on Version
|
||||
*/
|
||||
|
||||
|
||||
meta = myPatientDao.metaGetOperation(id.withVersion("1"));
|
||||
assertEquals(2, meta.getProfile().size());
|
||||
assertEquals(2, meta.getSecurity().size());
|
||||
|
|
@ -1228,7 +1338,7 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
/*
|
||||
* Meta-Add on latest version
|
||||
*/
|
||||
|
||||
|
||||
meta = new MetaDt();
|
||||
meta.addTag().setSystem("tag_scheme1").setCode("tag_code1");
|
||||
meta.addProfile("http://profile/1");
|
||||
|
|
@ -1238,7 +1348,7 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
assertEquals(2, newMeta.getSecurity().size());
|
||||
assertEquals(2, newMeta.getTag().size());
|
||||
assertEquals("2", newMeta.getVersionId());
|
||||
|
||||
|
||||
}
|
||||
|
||||
@Test
|
||||
|
|
@ -1859,7 +1969,7 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
securityLabels.add(new CodingDt().setSystem("seclabel:sys:2").setCode("seclabel:code:2").setDisplay("seclabel:dis:2"));
|
||||
ResourceMetadataKeyEnum.SECURITY_LABELS.put(patient, securityLabels);
|
||||
|
||||
ArrayList<IdDt> profiles = new ArrayList<IdDt>();
|
||||
List<IdDt> profiles = new ArrayList<IdDt>();
|
||||
profiles.add(new IdDt("http://profile/1"));
|
||||
profiles.add(new IdDt("http://profile/2"));
|
||||
ResourceMetadataKeyEnum.PROFILES.put(patient, profiles);
|
||||
|
|
@ -1871,6 +1981,7 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
|
||||
Patient retrieved = myPatientDao.read(patientId);
|
||||
TagList published = (TagList) retrieved.getResourceMetadata().get(ResourceMetadataKeyEnum.TAG_LIST);
|
||||
sort(published);
|
||||
assertEquals(2, published.size());
|
||||
assertEquals("Dog", published.get(0).getTerm());
|
||||
assertEquals("Puppies", published.get(0).getLabel());
|
||||
|
|
@ -1878,14 +1989,18 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
assertEquals("Cat", published.get(1).getTerm());
|
||||
assertEquals("Kittens", published.get(1).getLabel());
|
||||
assertEquals("http://foo", published.get(1).getScheme());
|
||||
assertEquals(2, ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).size());
|
||||
assertEquals("seclabel:sys:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getDisplayElement().getValue());
|
||||
assertEquals("seclabel:sys:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getDisplayElement().getValue());
|
||||
assertEquals(2, ResourceMetadataKeyEnum.PROFILES.get(retrieved).size());
|
||||
List<BaseCodingDt> secLabels = ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved);
|
||||
sortCodings(secLabels);
|
||||
assertEquals(2, secLabels.size());
|
||||
assertEquals("seclabel:sys:1", secLabels.get(0).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:1", secLabels.get(0).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:1", secLabels.get(0).getDisplayElement().getValue());
|
||||
assertEquals("seclabel:sys:2", secLabels.get(1).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:2", secLabels.get(1).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:2", secLabels.get(1).getDisplayElement().getValue());
|
||||
profiles = ResourceMetadataKeyEnum.PROFILES.get(retrieved);
|
||||
profiles = sortIds(profiles);
|
||||
assertEquals(2, profiles.size());
|
||||
assertEquals("http://profile/1", ResourceMetadataKeyEnum.PROFILES.get(retrieved).get(0).getValue());
|
||||
assertEquals("http://profile/2", ResourceMetadataKeyEnum.PROFILES.get(retrieved).get(1).getValue());
|
||||
|
||||
|
|
@ -1899,13 +2014,13 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
assertEquals("Cat", published.get(1).getTerm());
|
||||
assertEquals("Kittens", published.get(1).getLabel());
|
||||
assertEquals("http://foo", published.get(1).getScheme());
|
||||
assertEquals(2, ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).size());
|
||||
assertEquals("seclabel:sys:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getDisplayElement().getValue());
|
||||
assertEquals("seclabel:sys:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getDisplayElement().getValue());
|
||||
assertEquals(2, secLabels.size());
|
||||
assertEquals("seclabel:sys:1", secLabels.get(0).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:1", secLabels.get(0).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:1", secLabels.get(0).getDisplayElement().getValue());
|
||||
assertEquals("seclabel:sys:2", secLabels.get(1).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:2", secLabels.get(1).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:2", secLabels.get(1).getDisplayElement().getValue());
|
||||
assertEquals(2, ResourceMetadataKeyEnum.PROFILES.get(retrieved).size());
|
||||
assertEquals("http://profile/1", ResourceMetadataKeyEnum.PROFILES.get(retrieved).get(0).getValue());
|
||||
assertEquals("http://profile/2", ResourceMetadataKeyEnum.PROFILES.get(retrieved).get(1).getValue());
|
||||
|
|
@ -1925,19 +2040,50 @@ public class FhirResourceDaoDstu2Test extends BaseJpaDstu2Test {
|
|||
assertEquals("Cow", published.get(2).getTerm());
|
||||
assertEquals("Calves", published.get(2).getLabel());
|
||||
assertEquals("http://foo", published.get(2).getScheme());
|
||||
assertEquals(2, ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).size());
|
||||
assertEquals("seclabel:sys:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:1", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(0).getDisplayElement().getValue());
|
||||
assertEquals("seclabel:sys:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:2", ResourceMetadataKeyEnum.SECURITY_LABELS.get(retrieved).get(1).getDisplayElement().getValue());
|
||||
assertEquals(2, secLabels.size());
|
||||
assertEquals("seclabel:sys:1", secLabels.get(0).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:1", secLabels.get(0).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:1", secLabels.get(0).getDisplayElement().getValue());
|
||||
assertEquals("seclabel:sys:2", secLabels.get(1).getSystemElement().getValue());
|
||||
assertEquals("seclabel:code:2", secLabels.get(1).getCodeElement().getValue());
|
||||
assertEquals("seclabel:dis:2", secLabels.get(1).getDisplayElement().getValue());
|
||||
assertEquals(2, ResourceMetadataKeyEnum.PROFILES.get(retrieved).size());
|
||||
assertEquals("http://profile/1", ResourceMetadataKeyEnum.PROFILES.get(retrieved).get(0).getValue());
|
||||
assertEquals("http://profile/2", ResourceMetadataKeyEnum.PROFILES.get(retrieved).get(1).getValue());
|
||||
|
||||
}
|
||||
|
||||
private List<IdDt> sortIds(List<IdDt> theProfiles) {
|
||||
ArrayList<IdDt> retVal = new ArrayList<IdDt>(theProfiles);
|
||||
Collections.sort(retVal, new Comparator<IdDt>() {
|
||||
@Override
|
||||
public int compare(IdDt theO1, IdDt theO2) {
|
||||
return theO1.getValue().compareTo(theO2.getValue());
|
||||
}});
|
||||
return retVal;
|
||||
}
|
||||
|
||||
private void sortCodings(List<BaseCodingDt> theSecLabels) {
|
||||
Collections.sort(theSecLabels, new Comparator<BaseCodingDt>() {
|
||||
@Override
|
||||
public int compare(BaseCodingDt theO1, BaseCodingDt theO2) {
|
||||
return theO1.getSystemElement().getValue().compareTo(theO2.getSystemElement().getValue());
|
||||
}});
|
||||
}
|
||||
|
||||
private void sort(TagList thePublished) {
|
||||
ArrayList<Tag> tags = new ArrayList<Tag>(thePublished);
|
||||
Collections.sort(tags, new Comparator<Tag>() {
|
||||
@Override
|
||||
public int compare(Tag theO1, Tag theO2) {
|
||||
return defaultString(theO1.getScheme()).compareTo(defaultString(theO2.getScheme()));
|
||||
}});
|
||||
thePublished.clear();
|
||||
for (Tag next : tags) {
|
||||
thePublished.add(next);
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testTokenParamWhichIsTooLong() {
|
||||
|
||||
|
|
|
|||
|
|
@ -101,6 +101,7 @@ import ca.uhn.fhir.model.valueset.BundleEntrySearchModeEnum;
|
|||
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
|
||||
import ca.uhn.fhir.narrative.DefaultThymeleafNarrativeGenerator;
|
||||
import ca.uhn.fhir.rest.api.MethodOutcome;
|
||||
import ca.uhn.fhir.rest.api.SummaryEnum;
|
||||
import ca.uhn.fhir.rest.client.IGenericClient;
|
||||
import ca.uhn.fhir.rest.client.ServerValidationModeEnum;
|
||||
import ca.uhn.fhir.rest.client.interceptor.LoggingInterceptor;
|
||||
|
|
@ -424,7 +425,8 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
}
|
||||
|
||||
/*
|
||||
* Try it with a raw socket call. The Apache client won't let us use the unescaped "|" in the URL but we want to make sure that works too..
|
||||
* Try it with a raw socket call. The Apache client won't let us use the unescaped "|" in the URL but we want to
|
||||
* make sure that works too..
|
||||
*/
|
||||
Socket sock = new Socket();
|
||||
sock.setSoTimeout(3000);
|
||||
|
|
@ -685,6 +687,30 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testHistoryWithDeletedResource() {
|
||||
String methodName = "testHistoryWithDeletedResource";
|
||||
|
||||
Patient patient = new Patient();
|
||||
patient.addName().addFamily(methodName);
|
||||
IIdType id = ourClient.create().resource(patient).execute().getId().toVersionless();
|
||||
ourClient.delete().resourceById(id).execute();
|
||||
patient.setId(id);
|
||||
ourClient.update().resource(patient).execute();
|
||||
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle history = ourClient.history().onInstance(id).andReturnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class).prettyPrint().summaryMode(SummaryEnum.DATA).execute();
|
||||
assertEquals(3, history.getEntry().size());
|
||||
assertEquals(id.withVersion("3"), history.getEntry().get(0).getResource().getId());
|
||||
assertEquals(1, ((Patient) history.getEntry().get(0).getResource()).getName().size());
|
||||
|
||||
assertEquals(id.withVersion("2"), history.getEntry().get(1).getResource().getId());
|
||||
assertEquals(HTTPVerbEnum.DELETE, history.getEntry().get(1).getRequest().getMethodElement().getValueAsEnum());
|
||||
assertEquals(0, ((Patient) history.getEntry().get(1).getResource()).getName().size());
|
||||
|
||||
assertEquals(id.withVersion("1"), history.getEntry().get(2).getResource().getId());
|
||||
assertEquals(1, ((Patient) history.getEntry().get(2).getResource()).getName().size());
|
||||
}
|
||||
|
||||
/**
|
||||
* See issue #52
|
||||
*/
|
||||
|
|
@ -703,6 +729,21 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testMetadata() throws Exception {
|
||||
HttpGet get = new HttpGet(ourServerBase + "/metadata");
|
||||
CloseableHttpResponse response = ourHttpClient.execute(get);
|
||||
try {
|
||||
String resp = IOUtils.toString(response.getEntity().getContent());
|
||||
ourLog.info(resp);
|
||||
assertEquals(200, response.getStatusLine().getStatusCode());
|
||||
assertThat(resp, stringContainsInOrder("THIS IS THE DESC"));
|
||||
} finally {
|
||||
IOUtils.closeQuietly(response.getEntity().getContent());
|
||||
response.close();
|
||||
}
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testMetaOperations() throws Exception {
|
||||
String methodName = "testMetaOperations";
|
||||
|
|
@ -838,7 +879,7 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
.returnBundle(ca.uhn.fhir.model.dstu2.resource.Bundle.class)
|
||||
.execute();
|
||||
//@formatter:on
|
||||
|
||||
|
||||
assertEquals(1, actual.getEntry().size());
|
||||
assertEquals(ourServerBase + "/Patient/" + p1Id.getIdPart(), actual.getEntry().get(0).getFullUrl());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntry().get(0).getResource().getId().getIdPart());
|
||||
|
|
@ -853,8 +894,7 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
p1.addIdentifier().setValue("testSearchByIdentifierWithoutSystem01");
|
||||
IdDt p1Id = (IdDt) ourClient.create().resource(p1).execute().getId();
|
||||
|
||||
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode(null, "testSearchByIdentifierWithoutSystem01")).encodedJson().prettyPrint()
|
||||
.execute();
|
||||
Bundle actual = ourClient.search().forResource(Patient.class).where(Patient.IDENTIFIER.exactly().systemAndCode(null, "testSearchByIdentifierWithoutSystem01")).encodedJson().prettyPrint().execute();
|
||||
assertEquals(1, actual.size());
|
||||
assertEquals(p1Id.getIdPart(), actual.getEntries().get(0).getResource().getId().getIdPart());
|
||||
|
||||
|
|
@ -989,6 +1029,19 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
}
|
||||
}
|
||||
|
||||
private void testSearchReturnsResults(String search) throws IOException, ClientProtocolException {
|
||||
int matches;
|
||||
HttpGet get = new HttpGet(ourServerBase + search);
|
||||
CloseableHttpResponse response = ourHttpClient.execute(get);
|
||||
String resp = IOUtils.toString(response.getEntity().getContent());
|
||||
IOUtils.closeQuietly(response.getEntity().getContent());
|
||||
ourLog.info(resp);
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle bundle = ourCtx.newXmlParser().parseResource(ca.uhn.fhir.model.dstu2.resource.Bundle.class, resp);
|
||||
matches = bundle.getTotal();
|
||||
|
||||
assertThat(matches, greaterThan(0));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchReturnsSearchDate() throws Exception {
|
||||
Date before = new Date();
|
||||
|
|
@ -1047,33 +1100,6 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
assertEquals(BundleEntrySearchModeEnum.INCLUDE, found.getEntries().get(1).getResource().getResourceMetadata().get(ResourceMetadataKeyEnum.ENTRY_SEARCH_MODE));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchWithTextInexactMatch() throws Exception {
|
||||
Observation obs = new Observation();
|
||||
obs.getCode().setText("THIS_IS_THE_TEXT");
|
||||
obs.getCode().addCoding().setSystem("SYSTEM").setCode("CODE").setDisplay("THIS_IS_THE_DISPLAY");
|
||||
ourClient.create().resource(obs).execute();
|
||||
|
||||
testSearchReturnsResults("/Observation?code%3Atext=THIS_IS_THE_TEXT");
|
||||
testSearchReturnsResults("/Observation?code%3Atext=THIS_IS_THE_");
|
||||
testSearchReturnsResults("/Observation?code%3Atext=this_is_the_");
|
||||
testSearchReturnsResults("/Observation?code%3Atext=THIS_IS_THE_DISPLAY");
|
||||
testSearchReturnsResults("/Observation?code%3Atext=THIS_IS_THE_disp");
|
||||
}
|
||||
|
||||
private void testSearchReturnsResults(String search) throws IOException, ClientProtocolException {
|
||||
int matches;
|
||||
HttpGet get = new HttpGet(ourServerBase + search);
|
||||
CloseableHttpResponse response = ourHttpClient.execute(get);
|
||||
String resp = IOUtils.toString(response.getEntity().getContent());
|
||||
IOUtils.closeQuietly(response.getEntity().getContent());
|
||||
ourLog.info(resp);
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle bundle = ourCtx.newXmlParser().parseResource(ca.uhn.fhir.model.dstu2.resource.Bundle.class, resp);
|
||||
matches = bundle.getTotal();
|
||||
|
||||
assertThat(matches, greaterThan(0));
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchWithMissing() throws Exception {
|
||||
ourLog.info("Starting testSearchWithMissing");
|
||||
|
|
@ -1153,6 +1179,20 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
checkParamMissing(Observation.SP_DATE);
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchWithTextInexactMatch() throws Exception {
|
||||
Observation obs = new Observation();
|
||||
obs.getCode().setText("THIS_IS_THE_TEXT");
|
||||
obs.getCode().addCoding().setSystem("SYSTEM").setCode("CODE").setDisplay("THIS_IS_THE_DISPLAY");
|
||||
ourClient.create().resource(obs).execute();
|
||||
|
||||
testSearchReturnsResults("/Observation?code%3Atext=THIS_IS_THE_TEXT");
|
||||
testSearchReturnsResults("/Observation?code%3Atext=THIS_IS_THE_");
|
||||
testSearchReturnsResults("/Observation?code%3Atext=this_is_the_");
|
||||
testSearchReturnsResults("/Observation?code%3Atext=THIS_IS_THE_DISPLAY");
|
||||
testSearchReturnsResults("/Observation?code%3Atext=THIS_IS_THE_disp");
|
||||
}
|
||||
|
||||
/**
|
||||
* See #198
|
||||
*/
|
||||
|
|
@ -1281,7 +1321,7 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
//@formatter:om
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Test for issue #60
|
||||
*/
|
||||
|
|
@ -1637,21 +1677,6 @@ public class ResourceProviderDstu2Test extends BaseJpaTest {
|
|||
ourHttpClient.close();
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testMetadata() throws Exception {
|
||||
HttpGet get = new HttpGet(ourServerBase + "/metadata");
|
||||
CloseableHttpResponse response = ourHttpClient.execute(get);
|
||||
try {
|
||||
String resp = IOUtils.toString(response.getEntity().getContent());
|
||||
ourLog.info(resp);
|
||||
assertEquals(200, response.getStatusLine().getStatusCode());
|
||||
assertThat(resp, stringContainsInOrder("THIS IS THE DESC"));
|
||||
} finally {
|
||||
IOUtils.closeQuietly(response.getEntity().getContent());
|
||||
response.close();
|
||||
}
|
||||
}
|
||||
|
||||
@SuppressWarnings("unchecked")
|
||||
@BeforeClass
|
||||
public static void beforeClass() throws Exception {
|
||||
|
|
|
|||
|
|
@ -51,6 +51,7 @@ import ca.uhn.fhir.model.dstu2.valueset.SearchEntryModeEnum;
|
|||
import ca.uhn.fhir.model.primitive.IdDt;
|
||||
import ca.uhn.fhir.model.primitive.InstantDt;
|
||||
import ca.uhn.fhir.model.valueset.BundleEntrySearchModeEnum;
|
||||
import ca.uhn.fhir.model.valueset.BundleEntryTransactionMethodEnum;
|
||||
import ca.uhn.fhir.model.valueset.BundleTypeEnum;
|
||||
import ca.uhn.fhir.rest.server.AddProfileTagEnum;
|
||||
import ca.uhn.fhir.rest.server.BundleInclusionRule;
|
||||
|
|
@ -147,6 +148,10 @@ public class Dstu2BundleFactory implements IVersionSpecificBundleFactory {
|
|||
if (next.getId().hasBaseUrl()) {
|
||||
entry.setFullUrl(next.getId().getValue());
|
||||
}
|
||||
BundleEntryTransactionMethodEnum httpVerb = ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get(next);
|
||||
if (httpVerb != null) {
|
||||
entry.getRequest().getMethodElement().setValueAsString(httpVerb.getCode());
|
||||
}
|
||||
}
|
||||
|
||||
/*
|
||||
|
|
@ -238,6 +243,10 @@ public class Dstu2BundleFactory implements IVersionSpecificBundleFactory {
|
|||
} while (references.isEmpty() == false);
|
||||
|
||||
Entry entry = myBundle.addEntry().setResource(next);
|
||||
BundleEntryTransactionMethodEnum httpVerb = ResourceMetadataKeyEnum.ENTRY_TRANSACTION_METHOD.get(next);
|
||||
if (httpVerb != null) {
|
||||
entry.getRequest().getMethodElement().setValueAsString(httpVerb.getCode());
|
||||
}
|
||||
populateBundleEntryFullUrl(next, entry);
|
||||
|
||||
BundleEntrySearchModeEnum searchMode = ResourceMetadataKeyEnum.ENTRY_SEARCH_MODE.get(next);
|
||||
|
|
|
|||
|
|
@ -92,6 +92,21 @@ public class XmlParserDstu2Test {
|
|||
private static final FhirContext ourCtx = FhirContext.forDstu2();
|
||||
private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(XmlParserDstu2Test.class);
|
||||
|
||||
@Test
|
||||
public void testParseBundleWithResourceId() {
|
||||
//@formatter:off
|
||||
String input = "<Bundle xmlns=\"http://hl7.org/fhir\">"
|
||||
+ "<entry><fullUrl value=\"http://localhost:58402/fhir/context/Patient/1\"/><resource><Patient xmlns=\"http://hl7.org/fhir\"><id value=\"1\"/><meta><versionId value=\"3\"/><lastUpdated value=\"2015-09-11T23:35:43.273-04:00\"/></meta><name><family value=\"testHistoryWithDeletedResource\"/></name></Patient></resource></entry>"
|
||||
+ "<entry><fullUrl value=\"http://localhost:58402/fhir/context/Patient/1\"/><resource><Patient xmlns=\"http://hl7.org/fhir\"><id value=\"1\"/><meta><versionId value=\"2\"/><lastUpdated value=\"2015-09-11T23:35:42.849-04:00\"/></meta><name><family value=\"testHistoryWithDeletedResource\"/></name></Patient></resource></entry>"
|
||||
+ "<entry><fullUrl value=\"http://localhost:58402/fhir/context/Patient/1\"/><resource><Patient xmlns=\"http://hl7.org/fhir\"><id value=\"1\"/><meta><versionId value=\"1\"/><lastUpdated value=\"2015-09-11T23:35:42.295-04:00\"/></meta><name><family value=\"testHistoryWithDeletedResource\"/></name></Patient></resource></entry>"
|
||||
+ "</Bundle>\n";
|
||||
//@formatter:on
|
||||
|
||||
ca.uhn.fhir.model.dstu2.resource.Bundle bundle = ourCtx.newXmlParser().parseResource(ca.uhn.fhir.model.dstu2.resource.Bundle.class, input);
|
||||
assertEquals("http://localhost:58402/fhir/context/Patient/1/_history/3", bundle.getEntry().get(0).getResource().getId().getValue());
|
||||
assertEquals("http://localhost:58402/fhir/context/Patient/1/_history/2", bundle.getEntry().get(1).getResource().getId().getValue());
|
||||
assertEquals("http://localhost:58402/fhir/context/Patient/1/_history/1", bundle.getEntry().get(2).getResource().getId().getValue());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testEncodeReferenceUsingUnqualifiedResourceWorksCorrectly() {
|
||||
|
|
|
|||
|
|
@ -182,6 +182,10 @@
|
|||
RestfulServer now supports dynamically adding and removing resource providers
|
||||
at runtime. Thanks to Bill Denton for adding this.
|
||||
</action>
|
||||
<action type="add">
|
||||
JPA server now correctly suppresses contents of deleted resources
|
||||
in history
|
||||
</action>
|
||||
</release>
|
||||
<release version="1.1" date="2015-07-13">
|
||||
<action type="add">
|
||||
|
|
|
|||
Loading…
Reference in New Issue