honeymoose
/
hapi-fhir
mirror of https://github.com/hapifhir/hapi-fhir.git
1
0
Fork 0
Code Issues Packages Projects Releases Wiki Activity

Test fix

This commit is contained in:
James Agnew 2019-12-21 12:24:15 -05:00
parent ecb8da7aea
commit 536f46c89e
1 changed files with 162 additions and 123 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

99
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/SearchBuilder.java
View File

@ -20,7 +20,15 @@ package ca.uhn.fhir.jpa.dao;
* #L% * #L%
*/ */
import ca.uhn.fhir.context.*; import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeDeclaredChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
import ca.uhn.fhir.context.ConfigurationException;
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.RuntimeChildChoiceDefinition;
import ca.uhn.fhir.context.RuntimeChildResourceDefinition;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.context.RuntimeSearchParam;
import ca.uhn.fhir.interceptor.api.HookParams; import ca.uhn.fhir.interceptor.api.HookParams;
import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster; import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
import ca.uhn.fhir.interceptor.api.Pointcut; import ca.uhn.fhir.interceptor.api.Pointcut;
@ -43,8 +51,18 @@ import ca.uhn.fhir.jpa.searchparam.registry.ISearchParamRegistry;
import ca.uhn.fhir.jpa.searchparam.util.SourceParam; import ca.uhn.fhir.jpa.searchparam.util.SourceParam;
import ca.uhn.fhir.jpa.term.VersionIndependentConcept; import ca.uhn.fhir.jpa.term.VersionIndependentConcept;
import ca.uhn.fhir.jpa.term.api.ITermReadSvc; import ca.uhn.fhir.jpa.term.api.ITermReadSvc;
import ca.uhn.fhir.jpa.util.*; import ca.uhn.fhir.jpa.util.BaseIterator;
import ca.uhn.fhir.model.api.*; import ca.uhn.fhir.jpa.util.CurrentThreadCaptureQueriesListener;
import ca.uhn.fhir.jpa.util.JpaInterceptorBroadcaster;
import ca.uhn.fhir.jpa.util.ScrollableResultsIterator;
import ca.uhn.fhir.jpa.util.SqlQueryList;
import ca.uhn.fhir.model.api.IPrimitiveDatatype;
import ca.uhn.fhir.model.api.IQueryParameterAnd;
import ca.uhn.fhir.model.api.IQueryParameterOr;
import ca.uhn.fhir.model.api.IQueryParameterType;
import ca.uhn.fhir.model.api.IResource;
import ca.uhn.fhir.model.api.Include;
import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
import ca.uhn.fhir.model.base.composite.BaseCodingDt; import ca.uhn.fhir.model.base.composite.BaseCodingDt;
import ca.uhn.fhir.model.base.composite.BaseIdentifierDt; import ca.uhn.fhir.model.base.composite.BaseIdentifierDt;
import ca.uhn.fhir.model.base.composite.BaseQuantityDt; import ca.uhn.fhir.model.base.composite.BaseQuantityDt;
@ -52,7 +70,11 @@ import ca.uhn.fhir.model.primitive.IdDt;
import ca.uhn.fhir.model.primitive.InstantDt; import ca.uhn.fhir.model.primitive.InstantDt;
import ca.uhn.fhir.model.valueset.BundleEntrySearchModeEnum; import ca.uhn.fhir.model.valueset.BundleEntrySearchModeEnum;
import ca.uhn.fhir.parser.DataFormatException; import ca.uhn.fhir.parser.DataFormatException;
import ca.uhn.fhir.rest.api.*; import ca.uhn.fhir.rest.api.Constants;
import ca.uhn.fhir.rest.api.QualifiedParamList;
import ca.uhn.fhir.rest.api.RestSearchParameterTypeEnum;
import ca.uhn.fhir.rest.api.SortOrderEnum;
import ca.uhn.fhir.rest.api.SortSpec;
import ca.uhn.fhir.rest.api.server.IPreResourceAccessDetails; import ca.uhn.fhir.rest.api.server.IPreResourceAccessDetails;
import ca.uhn.fhir.rest.api.server.RequestDetails; import ca.uhn.fhir.rest.api.server.RequestDetails;
import ca.uhn.fhir.rest.param.*; import ca.uhn.fhir.rest.param.*;
@ -98,7 +120,11 @@ import java.util.Map.Entry;
import java.util.stream.Collectors; import java.util.stream.Collectors;
import static org.apache.commons.lang3.ObjectUtils.defaultIfNull; import static org.apache.commons.lang3.ObjectUtils.defaultIfNull;
import static org.apache.commons.lang3.StringUtils.*; import static org.apache.commons.lang3.StringUtils.defaultIfBlank;
import static org.apache.commons.lang3.StringUtils.defaultString;
import static org.apache.commons.lang3.StringUtils.isBlank;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import static org.apache.commons.lang3.StringUtils.trim;
/** /**
* The SearchBuilder is responsible for actually forming the SQL query that handles * The SearchBuilder is responsible for actually forming the SQL query that handles
@ -547,20 +573,36 @@ public class SearchBuilder implements ISearchBuilder {
List<ResourcePersistentId> targetPids = myIdHelperService.translateForcedIdToPids(targetIds, theRequest); List<ResourcePersistentId> targetPids = myIdHelperService.translateForcedIdToPids(targetIds, theRequest);
if (!targetPids.isEmpty()) { if (!targetPids.isEmpty()) {
ourLog.debug("Searching for resource link with target PIDs: {}", targetPids); ourLog.debug("Searching for resource link with target PIDs: {}", targetPids);
Predicate pathPredicate = ((operation == null) || (operation == SearchFilterParser.CompareOperation.eq)) ? createResourceLinkPathPredicate(theResourceName, theParamName, join) Predicate pathPredicate;
: createResourceLinkPathPredicate(theResourceName, theParamName, join).not(); if ((operation == null) || (operation == SearchFilterParser.CompareOperation.eq)) {
Predicate pidPredicate = ((operation == null) || (operation == SearchFilterParser.CompareOperation.eq)) ? join.get("myTargetResourcePid").in(targetPids) pathPredicate = createResourceLinkPathPredicate(theResourceName, theParamName, join);
: join.get("myTargetResourcePid").in(targetPids).not(); } else {
pathPredicate = createResourceLinkPathPredicate(theResourceName, theParamName, join).not();
}
Predicate pidPredicate;
if ((operation == null) || (operation == SearchFilterParser.CompareOperation.eq)) {
pidPredicate = join.get("myTargetResourcePid").in(ResourcePersistentId.toLongList(targetPids));
} else {
pidPredicate = join.get("myTargetResourcePid").in(ResourcePersistentId.toLongList(targetPids)).not();
}
codePredicates.add(myBuilder.and(pathPredicate, pidPredicate)); codePredicates.add(myBuilder.and(pathPredicate, pidPredicate));
} }
// Resources by fully qualified URL // Resources by fully qualified URL
if (!targetQualifiedUrls.isEmpty()) { if (!targetQualifiedUrls.isEmpty()) {
ourLog.debug("Searching for resource link with target URLs: {}", targetQualifiedUrls); ourLog.debug("Searching for resource link with target URLs: {}", targetQualifiedUrls);
Predicate pathPredicate = ((operation == null) || (operation == SearchFilterParser.CompareOperation.eq)) ? createResourceLinkPathPredicate(theResourceName, theParamName, join) Predicate pathPredicate;
: createResourceLinkPathPredicate(theResourceName, theParamName, join).not(); if ((operation == null) || (operation == SearchFilterParser.CompareOperation.eq)) {
Predicate pidPredicate = ((operation == null) || (operation == SearchFilterParser.CompareOperation.eq)) ? join.get("myTargetResourceUrl").in(targetQualifiedUrls) pathPredicate = createResourceLinkPathPredicate(theResourceName, theParamName, join);
: join.get("myTargetResourceUrl").in(targetQualifiedUrls).not(); } else {
pathPredicate = createResourceLinkPathPredicate(theResourceName, theParamName, join).not();
}
Predicate pidPredicate;
if ((operation == null) || (operation == SearchFilterParser.CompareOperation.eq)) {
pidPredicate = join.get("myTargetResourceUrl").in(targetQualifiedUrls);
} else {
pidPredicate = join.get("myTargetResourceUrl").in(targetQualifiedUrls).not();
}
codePredicates.add(myBuilder.and(pathPredicate, pidPredicate)); codePredicates.add(myBuilder.and(pathPredicate, pidPredicate));
} }
@ -3050,6 +3092,20 @@ public class SearchBuilder implements ISearchBuilder {
return theFrom.get("mySourcePath").in(path); return theFrom.get("mySourcePath").in(path);
} }
@VisibleForTesting
void setParamsForUnitTest(SearchParameterMap theParams) {
myParams = theParams;
}
SearchParameterMap getParams() {
return myParams;
}
@VisibleForTesting
void setEntityManagerForUnitTest(EntityManager theEntityManager) {
myEntityManager = theEntityManager;
}
private enum TokenModeEnum { private enum TokenModeEnum {
SYSTEM_ONLY, SYSTEM_ONLY,
VALUE_ONLY, VALUE_ONLY,
@ -3071,15 +3127,6 @@ public class SearchBuilder implements ISearchBuilder {
} }
@VisibleForTesting
void setParamsForUnitTest(SearchParameterMap theParams) {
myParams = theParams;
}
SearchParameterMap getParams() {
return myParams;
}
public class IncludesIterator extends BaseIterator<ResourcePersistentId> implements Iterator<ResourcePersistentId> { public class IncludesIterator extends BaseIterator<ResourcePersistentId> implements Iterator<ResourcePersistentId> {
private final RequestDetails myRequest; private final RequestDetails myRequest;
@ -3307,7 +3354,6 @@ public class SearchBuilder implements ISearchBuilder {
} }
} }
private static class CountQueryIterator implements Iterator<Long> { private static class CountQueryIterator implements Iterator<Long> {
private final TypedQuery<Long> myQuery; private final TypedQuery<Long> myQuery;
private boolean myCountLoaded; private boolean myCountLoaded;
@ -3375,7 +3421,6 @@ public class SearchBuilder implements ISearchBuilder {
return "%" + likeExpression.replace("%", "[%]"); return "%" + likeExpression.replace("%", "[%]");
} }
/** /**
* Figures out the tolerance for a search. For example, if the user is searching for <code>4.00</code>, this method * Figures out the tolerance for a search. For example, if the user is searching for <code>4.00</code>, this method
* returns <code>0.005</code> because we shold actually match values which are * returns <code>0.005</code> because we shold actually match values which are
@ -3440,13 +3485,7 @@ public class SearchBuilder implements ISearchBuilder {
return ResourcePersistentId.fromLongList(query.getResultList()); return ResourcePersistentId.fromLongList(query.getResultList());
} }
private static Predicate[] toArray(List<Predicate> thePredicates) { private static Predicate[] toArray(List<Predicate> thePredicates) {
return thePredicates.toArray(new Predicate[0]); return thePredicates.toArray(new Predicate[0]);
} }
@VisibleForTesting
void setEntityManagerForUnitTest(EntityManager theEntityManager) {
myEntityManager = theEntityManager;
}
} }