Clean up custom seach param code
This commit is contained in:
James
parent
f1828d1ca8
commit
53f6effd56
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@ -27,7 +27,6 @@ import java.util.Map;
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import javax.annotation.PostConstruct;
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import org.apache.commons.lang3.ObjectUtils;
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import org.apache.commons.lang3.Validate;
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import org.springframework.beans.factory.annotation.Autowired;
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@ -37,8 +36,6 @@ import ca.uhn.fhir.context.RuntimeSearchParam;
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public abstract class BaseSearchParamRegistry implements ISearchParamRegistry {
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private static final Map<String, RuntimeSearchParam> EMPTY_SP_MAP = Collections.emptyMap();
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private Map<String, Map<String, RuntimeSearchParam>> myBuiltInSearchParams;
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@Autowired
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@ -68,15 +65,6 @@ public abstract class BaseSearchParamRegistry implements ISearchParamRegistry {
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return myBuiltInSearchParams.get(theResourceName);
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}
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@Override
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public Collection<RuntimeSearchParam> getAllSearchParams(String theResourceName) {
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Validate.notBlank(theResourceName, "theResourceName must not be null or blank");
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Map<String, RuntimeSearchParam> map = myBuiltInSearchParams.get(theResourceName);
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map = ObjectUtils.defaultIfNull(map, EMPTY_SP_MAP);
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return Collections.unmodifiableCollection(map.values());
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}
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public Map<String, Map<String, RuntimeSearchParam>> getBuiltInSearchParams() {
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return myBuiltInSearchParams;
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}
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@ -1,26 +1,5 @@
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package ca.uhn.fhir.jpa.dao;
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/*
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* #%L
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* HAPI FHIR JPA Server
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* %%
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* Copyright (C) 2014 - 2017 University Health Network
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import java.util.Collection;
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import java.util.Map;
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import ca.uhn.fhir.context.RuntimeSearchParam;
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@ -33,6 +12,4 @@ public interface ISearchParamRegistry {
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Map<String,RuntimeSearchParam> getActiveSearchParams(String theResourceName);
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Collection<RuntimeSearchParam> getAllSearchParams(String theResourceName);
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}
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@ -2,8 +2,6 @@ package ca.uhn.fhir.jpa.dao.dstu3;
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import static org.apache.commons.lang3.StringUtils.isBlank;
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import java.util.List;
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/*
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* #%L
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* HAPI FHIR JPA Server
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@ -36,22 +34,21 @@ import ca.uhn.fhir.jpa.dao.IFhirResourceDaoSearchParameter;
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import ca.uhn.fhir.jpa.dao.IFhirSystemDao;
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import ca.uhn.fhir.jpa.dao.ISearchParamRegistry;
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import ca.uhn.fhir.jpa.entity.ResourceTable;
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import ca.uhn.fhir.jpa.util.DeleteConflict;
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import ca.uhn.fhir.parser.DataFormatException;
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import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
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import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
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import ca.uhn.fhir.util.ElementUtil;
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public class FhirResourceDaoSearchParameterDstu3 extends FhirResourceDaoDstu3<SearchParameter> implements IFhirResourceDaoSearchParameter<SearchParameter> {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(FhirResourceDaoSearchParameterDstu3.class);
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@Autowired
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private IFhirSystemDao<Bundle, Meta> mySystemDao;
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@Autowired
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private ISearchParamRegistry mySearchParamRegistry;
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private void markAffectedResources(SearchParameter theResource) {
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@Autowired
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private IFhirSystemDao<Bundle, Meta> mySystemDao;
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protected void markAffectedResources(SearchParameter theResource) {
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if (theResource != null) {
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String expression = theResource.getExpression();
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String resourceType = expression.substring(0, expression.indexOf('.'));
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@ -63,7 +60,6 @@ public class FhirResourceDaoSearchParameterDstu3 extends FhirResourceDaoDstu3<Se
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mySearchParamRegistry.forceRefresh();
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}
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/**
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* This method is called once per minute to perform any required re-indexing. During most passes this will
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* just check and find that there are no resources requiring re-indexing. In that case the method just returns
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@ -89,13 +85,6 @@ public class FhirResourceDaoSearchParameterDstu3 extends FhirResourceDaoDstu3<Se
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}
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@Override
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protected void preDelete(SearchParameter theResourceToDelete) {
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super.preDelete(theResourceToDelete);
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markAffectedResources(theResourceToDelete);
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}
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@Override
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protected void postPersist(ResourceTable theEntity, SearchParameter theResource) {
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super.postPersist(theEntity, theResource);
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@ -108,6 +97,12 @@ public class FhirResourceDaoSearchParameterDstu3 extends FhirResourceDaoDstu3<Se
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markAffectedResources(theResource);
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}
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@Override
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protected void preDelete(SearchParameter theResourceToDelete) {
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super.preDelete(theResourceToDelete);
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markAffectedResources(theResourceToDelete);
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}
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@Override
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protected void validateResourceForStorage(SearchParameter theResource, ResourceTable theEntityToSave) {
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super.validateResourceForStorage(theResource, theEntityToSave);
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@ -121,9 +116,18 @@ public class FhirResourceDaoSearchParameterDstu3 extends FhirResourceDaoDstu3<Se
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throw new UnprocessableEntityException("SearchParameter.expression is missing");
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}
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if (ElementUtil.isEmpty(theResource.getBase())) {
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throw new UnprocessableEntityException("SearchParameter.base is missing");
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}
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expression = expression.trim();
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theResource.setExpression(expression);
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String[] expressionSplit = BaseSearchParamExtractor.SPLIT.split(expression);
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String allResourceName = null;
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for (String nextPath : expressionSplit) {
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nextPath = nextPath.trim();
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int dotIdx = nextPath.indexOf('.');
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if (dotIdx == -1) {
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throw new UnprocessableEntityException("Invalid SearchParameter.expression value \"" + nextPath + "\". Must start with a resource name");
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@ -10,7 +10,7 @@ package ca.uhn.fhir.jpa.dao.dstu3;
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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@ -35,6 +35,7 @@ import org.apache.commons.lang3.time.DateUtils;
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import org.hl7.fhir.dstu3.model.CodeType;
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import org.hl7.fhir.dstu3.model.SearchParameter;
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import org.hl7.fhir.instance.model.api.IBaseResource;
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import org.hl7.fhir.instance.model.api.IIdType;
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import org.springframework.beans.factory.annotation.Autowired;
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import ca.uhn.fhir.context.RuntimeSearchParam;
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@ -50,19 +51,43 @@ import ca.uhn.fhir.rest.server.IBundleProvider;
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public class SearchParamRegistryDstu3 extends BaseSearchParamRegistry {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(SearchParamRegistryDstu3.class);
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@Autowired
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private IFhirResourceDao<SearchParameter> mySpDao;
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private long myLastRefresh;
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private volatile Map<String, Map<String, RuntimeSearchParam>> myActiveSearchParams;
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@Autowired
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private DaoConfig myDaoConfig;
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private long myLastRefresh;
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@Autowired
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private IFhirResourceDao<SearchParameter> mySpDao;
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@Override
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public void forceRefresh() {
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myLastRefresh = 0;
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}
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@Override
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public Map<String, Map<String, RuntimeSearchParam>> getActiveSearchParams() {
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refreshCacheIfNeccesary();
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return myActiveSearchParams;
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}
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@Override
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public Map<String, RuntimeSearchParam> getActiveSearchParams(String theResourceName) {
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refreshCacheIfNeccesary();
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return myActiveSearchParams.get(theResourceName);
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}
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private Map<String, RuntimeSearchParam> getSearchParamMap(Map<String, Map<String, RuntimeSearchParam>> searchParams, String theResourceName) {
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Map<String, RuntimeSearchParam> retVal = searchParams.get(theResourceName);
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if (retVal == null) {
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retVal = new HashMap<String, RuntimeSearchParam>();
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searchParams.put(theResourceName, retVal);
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}
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return retVal;
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}
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private void refreshCacheIfNeccesary() {
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long refreshInterval = 60 * DateUtils.MILLIS_PER_MINUTE;
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if (System.currentTimeMillis() - refreshInterval > myLastRefresh) {
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StopWatch sw = new StopWatch();
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@ -134,22 +159,6 @@ public class SearchParamRegistryDstu3 extends BaseSearchParamRegistry {
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myLastRefresh = System.currentTimeMillis();
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ourLog.info("Refreshed search parameter cache in {}ms", sw.getMillis());
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}
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return myActiveSearchParams.get(theResourceName);
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}
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@Override
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public void forceRefresh() {
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myLastRefresh = 0;
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}
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private Map<String, RuntimeSearchParam> getSearchParamMap(Map<String, Map<String, RuntimeSearchParam>> searchParams, String theResourceName) {
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Map<String, RuntimeSearchParam> retVal = searchParams.get(theResourceName);
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if (retVal == null) {
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retVal = new HashMap<String, RuntimeSearchParam>();
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searchParams.put(theResourceName, retVal);
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}
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return retVal;
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}
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private RuntimeSearchParam toRuntimeSp(SearchParameter theNextSp) {
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@ -208,7 +217,9 @@ public class SearchParamRegistryDstu3 extends BaseSearchParamRegistry {
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return null;
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}
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RuntimeSearchParam retVal = new RuntimeSearchParam(name, description, path, paramType, providesMembershipInCompartments, targets, status);
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IIdType id = theNextSp.getIdElement();
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String uri = "";
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RuntimeSearchParam retVal = new RuntimeSearchParam(id, uri, name, description, path, paramType, null, providesMembershipInCompartments, targets, status);
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return retVal;
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}
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@ -70,6 +70,10 @@ public abstract class BaseResourceIndexedSearchParam implements Serializable {
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return myResourcePid;
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}
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public String getResourceType() {
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return myResourceType;
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}
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public void setParamName(String theName) {
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myParamName = theName;
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}
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@ -29,6 +29,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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@Test
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public void testCreateInvalidParamInvalidResourceName() {
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -43,9 +44,27 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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}
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}
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@Test
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public void testCreateInvalidNoBase() {
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SearchParameter fooSp = new SearchParameter();
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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fooSp.setExpression("Patient.gender");
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fooSp.setXpathUsage(org.hl7.fhir.dstu3.model.SearchParameter.XPathUsageType.NORMAL);
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fooSp.setStatus(org.hl7.fhir.dstu3.model.Enumerations.PublicationStatus.ACTIVE);
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try {
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mySearchParameterDao.create(fooSp, mySrd);
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fail();
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} catch (UnprocessableEntityException e) {
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assertEquals("SearchParameter.base is missing", e.getMessage());
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}
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}
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@Test
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public void testCreateInvalidParamMismatchedResourceName() {
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -63,6 +82,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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@Test
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public void testCreateInvalidParamNoPath() {
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -79,6 +99,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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@Test
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public void testCreateInvalidParamNoResourceName() {
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -97,6 +118,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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public void testCreateInvalidParamParamNullStatus() {
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -115,6 +137,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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@Test
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public void testExtensionWithNoValueIndexesWithoutFailure() {
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SearchParameter eyeColourSp = new SearchParameter();
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eyeColourSp.addBase("Patient");
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eyeColourSp.setCode("eyecolour");
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eyeColourSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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eyeColourSp.setTitle("Eye Colour");
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@ -135,6 +158,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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@Test
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public void testSearchForExtension() {
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SearchParameter eyeColourSp = new SearchParameter();
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eyeColourSp.addBase("Patient");
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eyeColourSp.setCode("eyecolour");
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eyeColourSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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eyeColourSp.setTitle("Eye Colour");
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@ -168,6 +192,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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public void testSearchWithCustomParam() {
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -221,6 +246,7 @@ public class FhirResourceDaoDstu3SearchCustomSearchParamTest extends BaseJpaDstu
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public void testSearchWithCustomParamDraft() {
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -59,11 +59,6 @@ public class SearchParamExtractorDstu3Test {
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// nothing
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}
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@Override
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public Collection<RuntimeSearchParam> getAllSearchParams(String theResourceName) {
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throw new UnsupportedOperationException();
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}
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@Override
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public Map<String, Map<String, RuntimeSearchParam>> getActiveSearchParams() {
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throw new UnsupportedOperationException();
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@ -76,6 +76,7 @@ public class ResourceProviderCustomSearchParamDstu3Test extends BaseResourceProv
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@Test
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public void testSearchForExtension() {
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SearchParameter eyeColourSp = new SearchParameter();
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eyeColourSp.addBase("Patient");
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eyeColourSp.setCode("eyecolour");
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eyeColourSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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eyeColourSp.setTitle("Eye Colour");
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@ -147,6 +148,7 @@ public class ResourceProviderCustomSearchParamDstu3Test extends BaseResourceProv
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// Add a custom search parameter
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -157,6 +159,7 @@ public class ResourceProviderCustomSearchParamDstu3Test extends BaseResourceProv
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// Disable an existing parameter
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fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("gender");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("Gender");
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@ -199,6 +202,7 @@ public class ResourceProviderCustomSearchParamDstu3Test extends BaseResourceProv
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// Add a custom search parameter
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SearchParameter fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("foo");
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fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
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fooSp.setTitle("FOO SP");
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@ -209,6 +213,7 @@ public class ResourceProviderCustomSearchParamDstu3Test extends BaseResourceProv
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// Disable an existing parameter
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fooSp = new SearchParameter();
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fooSp.addBase("Patient");
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fooSp.setCode("gender");
|
||||
fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
|
||||
fooSp.setTitle("Gender");
|
||||
|
|
@ -253,6 +258,7 @@ public class ResourceProviderCustomSearchParamDstu3Test extends BaseResourceProv
|
|||
public void testSearchWithCustomParam() {
|
||||
|
||||
SearchParameter fooSp = new SearchParameter();
|
||||
fooSp.addBase("Patient");
|
||||
fooSp.setCode("foo");
|
||||
fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
|
||||
fooSp.setTitle("FOO SP");
|
||||
|
|
@ -304,6 +310,7 @@ public class ResourceProviderCustomSearchParamDstu3Test extends BaseResourceProv
|
|||
assertEquals(BaseHapiFhirDao.INDEX_STATUS_INDEXED, res.getIndexStatus().longValue());
|
||||
|
||||
SearchParameter fooSp = new SearchParameter();
|
||||
fooSp.addBase("Patient");
|
||||
fooSp.setCode("foo");
|
||||
fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.TOKEN);
|
||||
fooSp.setTitle("FOO SP");
|
||||
|
|
@ -324,6 +331,7 @@ public class ResourceProviderCustomSearchParamDstu3Test extends BaseResourceProv
|
|||
public void testSearchQualifiedWithCustomReferenceParam() {
|
||||
|
||||
SearchParameter fooSp = new SearchParameter();
|
||||
fooSp.addBase("Patient");
|
||||
fooSp.setCode("foo");
|
||||
fooSp.setType(org.hl7.fhir.dstu3.model.Enumerations.SearchParamType.REFERENCE);
|
||||
fooSp.setTitle("FOO SP");
|
||||
|
|
|
|||
|
|
@ -24,6 +24,7 @@
|
|||
mode. This allows users to create search parameters which contain
|
||||
custom paths, or even override and disable existing search
|
||||
parameters.
|
||||
</action>
|
||||
<action type="fix">
|
||||
CLI example uploader couldn't find STU3 examples after CI server
|
||||
was moved to build.fhir.org
|
||||
|
|
@ -151,6 +152,11 @@
|
|||
being expanded had codes included explicitly (i.e. not by
|
||||
is-a relationship). Thanks to David Hay for reporting!
|
||||
</action>
|
||||
<action type="fix">
|
||||
JPA validator incorrectly returned an HTTP 400 instead of an HTTP 422 when
|
||||
the resource ID was not present and required, or vice versa. Thanks to
|
||||
Brian Postlethwaite for reporting!
|
||||
</action>
|
||||
</release>
|
||||
<release version="2.2" date="2016-12-20">
|
||||
<action type="add">
|
||||
|
|
|
|||
Loading…
Reference in New Issue