Merge branch 'master' of github.com:jamesagnew/hapi-fhir
This commit is contained in:
James Agnew
commit
5789cd2a46
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@ -0,0 +1,90 @@
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package ca.uhn.fhir.rest.client.interceptor;
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import static org.apache.commons.lang3.StringUtils.isNotBlank;
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/*
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* #%L
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* HAPI FHIR - Core Library
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* %%
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* Copyright (C) 2014 - 2017 University Health Network
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* %%
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* Licensed under the Apache License, Version 2.0 (the "License");
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* you may not use this file except in compliance with the License.
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* You may obtain a copy of the License at
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*
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* http://www.apache.org/licenses/LICENSE-2.0
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*
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* Unless required by applicable law or agreed to in writing, software
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* distributed under the License is distributed on an "AS IS" BASIS,
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* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
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* See the License for the specific language governing permissions and
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* limitations under the License.
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* #L%
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*/
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import java.io.IOException;
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import java.io.UnsupportedEncodingException;
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import org.apache.commons.codec.binary.Base64;
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import org.apache.commons.lang3.StringUtils;
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import ca.uhn.fhir.rest.client.IClientInterceptor;
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import ca.uhn.fhir.rest.client.api.IHttpRequest;
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import ca.uhn.fhir.rest.client.api.IHttpResponse;
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import ca.uhn.fhir.rest.server.Constants;
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import ca.uhn.fhir.rest.server.exceptions.InternalErrorException;
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/**
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* This interceptor adds an arbitrary header to requests made by this client. Both the
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* header name and the header value are specified by the calling code.
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*/
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public class SimpleRequestHeaderInterceptor implements IClientInterceptor {
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private String myHeaderName;
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private String myHeaderValue;
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/**
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* Constructor
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*/
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public SimpleRequestHeaderInterceptor() {
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this(null, null);
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}
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/**
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* Constructor
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*/
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public SimpleRequestHeaderInterceptor(String theHeaderName, String theHeaderValue) {
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super();
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myHeaderName = theHeaderName;
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myHeaderValue = theHeaderValue;
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}
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public String getHeaderName() {
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return myHeaderName;
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}
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public String getHeaderValue() {
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return myHeaderValue;
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}
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@Override
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public void interceptRequest(IHttpRequest theRequest) {
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if (isNotBlank(getHeaderName())) {
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theRequest.addHeader(getHeaderName(), getHeaderValue());
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}
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}
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@Override
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public void interceptResponse(IHttpResponse theResponse) throws IOException {
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// nothing
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}
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public void setHeaderName(String theHeaderName) {
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myHeaderName = theHeaderName;
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}
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public void setHeaderValue(String theHeaderValue) {
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myHeaderValue = theHeaderValue;
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}
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}
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@ -39,6 +39,7 @@ import java.util.Map.Entry;
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import java.util.Set;
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import javax.persistence.TypedQuery;
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import javax.servlet.http.HttpServletRequest;
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import org.apache.http.NameValuePair;
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import org.hl7.fhir.dstu3.model.Bundle;
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@ -79,6 +80,7 @@ import ca.uhn.fhir.jpa.util.DeleteConflict;
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import ca.uhn.fhir.model.api.ResourceMetadataKeyEnum;
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import ca.uhn.fhir.parser.DataFormatException;
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import ca.uhn.fhir.parser.IParser;
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import ca.uhn.fhir.rest.api.PreferReturnEnum;
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import ca.uhn.fhir.rest.api.RequestTypeEnum;
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import ca.uhn.fhir.rest.api.RestOperationTypeEnum;
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import ca.uhn.fhir.rest.method.BaseMethodBinding;
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@ -282,7 +284,7 @@ public class FhirSystemDaoDstu3 extends BaseHapiFhirSystemDao<Bundle, Meta> {
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super.clearRequestAsProcessingSubRequest(theRequestDetails);
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}
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}
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@SuppressWarnings("unchecked")
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private Bundle doTransaction(ServletRequestDetails theRequestDetails, Bundle theRequest, String theActionName) {
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BundleType transactionType = theRequest.getTypeElement().getValue();
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@ -408,7 +410,7 @@ public class FhirSystemDaoDstu3 extends BaseHapiFhirSystemDao<Bundle, Meta> {
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String matchUrl = nextReqEntry.getRequest().getIfNoneExist();
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outcome = resourceDao.create(res, matchUrl, false, theRequestDetails);
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if (nextResourceId != null) {
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handleTransactionCreateOrUpdateOutcome(idSubstitutions, idToPersistedOutcome, nextResourceId, outcome, nextRespEntry, resourceType, res);
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handleTransactionCreateOrUpdateOutcome(idSubstitutions, idToPersistedOutcome, nextResourceId, outcome, nextRespEntry, resourceType, res, theRequestDetails);
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}
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entriesToProcess.put(nextRespEntry, outcome.getEntity());
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if (outcome.getCreated() == false) {
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@ -445,12 +447,12 @@ public class FhirSystemDaoDstu3 extends BaseHapiFhirSystemDao<Bundle, Meta> {
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if (allDeleted.isEmpty()) {
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status = Constants.STATUS_HTTP_204_NO_CONTENT;
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}
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nextRespEntry.getResponse().setOutcome((Resource) deleteOutcome.getOperationOutcome());
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}
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nextRespEntry.getResponse().setStatus(toStatusString(status));
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break;
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}
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case PUT: {
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@ -474,7 +476,7 @@ public class FhirSystemDaoDstu3 extends BaseHapiFhirSystemDao<Bundle, Meta> {
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}
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}
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handleTransactionCreateOrUpdateOutcome(idSubstitutions, idToPersistedOutcome, nextResourceId, outcome, nextRespEntry, resourceType, res);
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handleTransactionCreateOrUpdateOutcome(idSubstitutions, idToPersistedOutcome, nextResourceId, outcome, nextRespEntry, resourceType, res, theRequestDetails);
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entriesToProcess.put(nextRespEntry, outcome.getEntity());
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break;
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}
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@ -646,10 +648,8 @@ public class FhirSystemDaoDstu3 extends BaseHapiFhirSystemDao<Bundle, Meta> {
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return response;
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}
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private static void handleTransactionCreateOrUpdateOutcome(Map<IdType, IdType> idSubstitutions, Map<IdType, DaoMethodOutcome> idToPersistedOutcome, IdType nextResourceId, DaoMethodOutcome outcome,
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BundleEntryComponent newEntry, String theResourceType, IBaseResource theRes) {
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BundleEntryComponent newEntry, String theResourceType, IBaseResource theRes, ServletRequestDetails theRequestDetails) {
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IdType newId = (IdType) outcome.getId().toUnqualifiedVersionless();
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IdType resourceId = isPlaceholder(nextResourceId) ? nextResourceId : nextResourceId.toUnqualifiedVersionless();
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if (newId.equals(resourceId) == false) {
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@ -668,6 +668,19 @@ public class FhirSystemDaoDstu3 extends BaseHapiFhirSystemDao<Bundle, Meta> {
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newEntry.getResponse().setStatus(toStatusString(Constants.STATUS_HTTP_200_OK));
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}
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newEntry.getResponse().setLastModified(((Resource) theRes).getMeta().getLastUpdated());
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if (theRequestDetails != null) {
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if (outcome.getResource() != null) {
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String prefer = theRequestDetails.getHeader(Constants.HEADER_PREFER);
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PreferReturnEnum preferReturn = RestfulServerUtils.parsePreferHeader(prefer);
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if (preferReturn != null) {
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if (preferReturn == PreferReturnEnum.REPRESENTATION) {
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newEntry.setResource((Resource) outcome.getResource());
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}
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}
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}
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}
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}
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private static boolean isPlaceholder(IdType theId) {
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@ -1181,6 +1181,23 @@ public class FhirResourceDaoDstu3SearchNoFtTest extends BaseJpaDstu3Test {
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assertThat(patients, (hasItems(id1a, id1b)));
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assertThat(patients, not(hasItems(id2)));
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}
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{
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SearchParameterMap params = new SearchParameterMap();
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params.setLastUpdated(new DateRangeParam(new DateParam(ParamPrefixEnum.GREATERTHAN_OR_EQUALS, beforeR2)));
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List<IIdType> patients = toUnqualifiedVersionlessIds(myPatientDao.search(params));
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assertThat(patients, not(hasItems(id1a, id1b)));
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assertThat(patients, (hasItems(id2)));
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}
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{
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SearchParameterMap params = new SearchParameterMap();
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params.setLastUpdated(new DateRangeParam(new DateParam(ParamPrefixEnum.LESSTHAN_OR_EQUALS, beforeR2)));
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List<IIdType> patients = toUnqualifiedVersionlessIds(myPatientDao.search(params));
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assertThat(patients, (hasItems(id1a, id1b)));
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assertThat(patients, not(hasItems(id2)));
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}
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}
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@SuppressWarnings("deprecation")
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@ -1369,6 +1369,53 @@ public class ResourceProviderDstu3Test extends BaseResourceProviderDstu3Test {
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ourLog.info(ids.toString());
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}
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@Test
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public void testSearchByLastUpdated() throws Exception {
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String methodName = "testSearchByLastUpdated";
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Patient p = new Patient();
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p.addName().setFamily(methodName+"1");
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IIdType pid1 = ourClient.create().resource(p).execute().getId().toUnqualifiedVersionless();
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Thread.sleep(10);
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long time1 = System.currentTimeMillis();
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Thread.sleep(10);
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Patient p2 = new Patient();
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p2.addName().setFamily(methodName+"2");
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IIdType pid2 = ourClient.create().resource(p2).execute().getId().toUnqualifiedVersionless();
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HttpGet get = new HttpGet(ourServerBase + "/Patient?_lastUpdated=lt" + new InstantType(new Date(time1)).getValueAsString());
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CloseableHttpResponse response = ourHttpClient.execute(get);
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try {
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assertEquals(200, response.getStatusLine().getStatusCode());
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String output = IOUtils.toString(response.getEntity().getContent(), StandardCharsets.UTF_8);
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IOUtils.closeQuietly(response.getEntity().getContent());
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ourLog.info(output);
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List<IIdType> ids = toUnqualifiedVersionlessIds(myFhirCtx.newXmlParser().parseResource(Bundle.class, output));
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ourLog.info(ids.toString());
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assertThat(ids, containsInAnyOrder(pid1));
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} finally {
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response.close();
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}
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get = new HttpGet(ourServerBase + "/Patient?_lastUpdated=gt" + new InstantType(new Date(time1)).getValueAsString());
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response = ourHttpClient.execute(get);
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try {
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assertEquals(200, response.getStatusLine().getStatusCode());
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String output = IOUtils.toString(response.getEntity().getContent(), StandardCharsets.UTF_8);
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IOUtils.closeQuietly(response.getEntity().getContent());
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ourLog.info(output);
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List<IIdType> ids = toUnqualifiedVersionlessIds(myFhirCtx.newXmlParser().parseResource(Bundle.class, output));
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ourLog.info(ids.toString());
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assertThat(ids, containsInAnyOrder(pid2));
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} finally {
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response.close();
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}
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}
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@Test
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public void testEverythingPatientType() throws Exception {
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String methodName = "testEverythingPatientType";
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|
|
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@ -60,6 +60,7 @@ import ca.uhn.fhir.jpa.rp.dstu3.OrganizationResourceProvider;
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import ca.uhn.fhir.jpa.rp.dstu3.PatientResourceProvider;
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import ca.uhn.fhir.jpa.testutil.RandomServerPortProvider;
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import ca.uhn.fhir.rest.client.IGenericClient;
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import ca.uhn.fhir.rest.client.interceptor.SimpleRequestHeaderInterceptor;
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import ca.uhn.fhir.rest.server.Constants;
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import ca.uhn.fhir.rest.server.EncodingEnum;
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import ca.uhn.fhir.rest.server.FifoMemoryPagingProvider;
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@ -80,6 +81,7 @@ public class SystemProviderDstu3Test extends BaseJpaDstu3Test {
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private static final org.slf4j.Logger ourLog = org.slf4j.LoggerFactory.getLogger(SystemProviderDstu3Test.class);
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private static Server ourServer;
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private static String ourServerBase;
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private SimpleRequestHeaderInterceptor mySimpleHeaderInterceptor;
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@Test
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public void testTransactionWithInlineConditionalUrl() throws Exception {
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@ -237,10 +239,17 @@ public class SystemProviderDstu3Test extends BaseJpaDstu3Test {
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myRestServer.setDefaultResponseEncoding(EncodingEnum.XML);
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}
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@Before
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public void before() {
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mySimpleHeaderInterceptor = new SimpleRequestHeaderInterceptor();
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ourClient.registerInterceptor(mySimpleHeaderInterceptor);
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}
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@SuppressWarnings("deprecation")
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@After
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public void after() {
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myRestServer.setUseBrowserFriendlyContentTypes(true);
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ourClient.unregisterInterceptor(mySimpleHeaderInterceptor);
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}
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@SuppressWarnings("deprecation")
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|
|
@ -632,6 +641,44 @@ public class SystemProviderDstu3Test extends BaseJpaDstu3Test {
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assertEquals(0, respSub.getEntry().size());
|
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}
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@Test
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public void testTransactionCreateWithPreferHeader() throws Exception {
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Patient p = new Patient();
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p.setActive(true);
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|
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Bundle req;
|
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Bundle resp;
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|
||||
// No prefer header
|
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req = new Bundle();
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req.setType(BundleType.TRANSACTION);
|
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req.addEntry().setResource(p).getRequest().setMethod(HTTPVerb.POST).setUrl("Patient");
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resp = ourClient.transaction().withBundle(req).execute();
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assertEquals(null, resp.getEntry().get(0).getResource());
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assertEquals("201 Created", resp.getEntry().get(0).getResponse().getStatus());
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|
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// Prefer return=minimal
|
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mySimpleHeaderInterceptor.setHeaderName(Constants.HEADER_PREFER);
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mySimpleHeaderInterceptor.setHeaderValue(Constants.HEADER_PREFER_RETURN + "=" + Constants.HEADER_PREFER_RETURN_MINIMAL);
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req = new Bundle();
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req.setType(BundleType.TRANSACTION);
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req.addEntry().setResource(p).getRequest().setMethod(HTTPVerb.POST).setUrl("Patient");
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resp = ourClient.transaction().withBundle(req).execute();
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assertEquals(null, resp.getEntry().get(0).getResource());
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assertEquals("201 Created", resp.getEntry().get(0).getResponse().getStatus());
|
||||
|
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// Prefer return=representation
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mySimpleHeaderInterceptor.setHeaderName(Constants.HEADER_PREFER);
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mySimpleHeaderInterceptor.setHeaderValue(Constants.HEADER_PREFER_RETURN + "=" + Constants.HEADER_PREFER_RETURN_REPRESENTATION);
|
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req = new Bundle();
|
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req.setType(BundleType.TRANSACTION);
|
||||
req.addEntry().setResource(p).getRequest().setMethod(HTTPVerb.POST).setUrl("Patient");
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||||
resp = ourClient.transaction().withBundle(req).execute();
|
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assertEquals(Patient.class, resp.getEntry().get(0).getResource().getClass());
|
||||
assertEquals("201 Created", resp.getEntry().get(0).getResponse().getStatus());
|
||||
}
|
||||
|
||||
@AfterClass
|
||||
public static void afterClassClearContext() throws Exception {
|
||||
ourServer.stop();
|
||||
|
|
|
|||
|
|
@ -27,6 +27,7 @@ import org.apache.http.ProtocolVersion;
|
|||
import org.apache.http.client.ClientProtocolException;
|
||||
import org.apache.http.client.HttpClient;
|
||||
import org.apache.http.client.methods.HttpEntityEnclosingRequestBase;
|
||||
import org.apache.http.client.methods.HttpGet;
|
||||
import org.apache.http.client.methods.HttpPut;
|
||||
import org.apache.http.client.methods.HttpUriRequest;
|
||||
import org.apache.http.entity.ContentType;
|
||||
|
|
@ -60,6 +61,7 @@ import ca.uhn.fhir.parser.CustomTypeDstu3Test.MyCustomPatient;
|
|||
import ca.uhn.fhir.parser.IParser;
|
||||
import ca.uhn.fhir.rest.api.MethodOutcome;
|
||||
import ca.uhn.fhir.rest.api.PreferReturnEnum;
|
||||
import ca.uhn.fhir.rest.client.SearchClientDstu3Test.ILocationClient;
|
||||
import ca.uhn.fhir.rest.client.exceptions.FhirClientConnectionException;
|
||||
import ca.uhn.fhir.rest.client.exceptions.NonFhirResponseException;
|
||||
import ca.uhn.fhir.rest.client.interceptor.CookieInterceptor;
|
||||
|
|
@ -177,6 +179,8 @@ public class GenericClientDstu3Test {
|
|||
OperationOutcome oo = (OperationOutcome) outcome.getOperationOutcome();
|
||||
assertThat(oo.getText().getDivAsString(), containsString("OK!"));
|
||||
}
|
||||
|
||||
|
||||
|
||||
@Test
|
||||
public void testPatchJsonByIdType() throws Exception {
|
||||
|
|
@ -1191,6 +1195,36 @@ public class GenericClientDstu3Test {
|
|||
// assertEquals("FAM", resp.getNameFirstRep().getFamilyAsSingleString());
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchWithNullParameters() throws Exception {
|
||||
final String msg = "{\"resourceType\":\"Bundle\",\"id\":null,\"base\":\"http://localhost:57931/fhir/contextDev\",\"total\":1,\"link\":[{\"relation\":\"self\",\"url\":\"http://localhost:57931/fhir/contextDev/Patient?identifier=urn%3AMultiFhirVersionTest%7CtestSubmitPatient01&_format=json\"}],\"entry\":[{\"resource\":{\"resourceType\":\"Patient\",\"id\":\"1\",\"meta\":{\"versionId\":\"1\",\"lastUpdated\":\"2014-12-20T18:41:29.706-05:00\"},\"identifier\":[{\"system\":\"urn:MultiFhirVersionTest\",\"value\":\"testSubmitPatient01\"}]}}]}";
|
||||
|
||||
ArgumentCaptor<HttpUriRequest> capt = ArgumentCaptor.forClass(HttpUriRequest.class);
|
||||
when(myHttpClient.execute(capt.capture())).thenReturn(myHttpResponse);
|
||||
when(myHttpResponse.getStatusLine()).thenReturn(new BasicStatusLine(new ProtocolVersion("HTTP", 1, 1), 200, "OK"));
|
||||
when(myHttpResponse.getEntity().getContentType()).thenReturn(new BasicHeader("content-type", Constants.CT_FHIR_JSON + "; charset=UTF-8"));
|
||||
when(myHttpResponse.getEntity().getContent()).then(new Answer<InputStream>() {
|
||||
@Override
|
||||
public InputStream answer(InvocationOnMock theInvocation) throws Throwable {
|
||||
return new ReaderInputStream(new StringReader(msg), Charset.forName("UTF-8"));
|
||||
}
|
||||
});
|
||||
|
||||
IGenericClient client = ourCtx.newRestfulGenericClient("http://example.com/fhir");
|
||||
int idx = 0;
|
||||
|
||||
DateTimeDt now = DateTimeDt.withCurrentTime();
|
||||
String dateString = now.getValueAsString().substring(0, 10);
|
||||
|
||||
client.search()
|
||||
.forResource("Patient")
|
||||
.where(Patient.NAME.matches().value((String)null))
|
||||
.returnBundle(Bundle.class)
|
||||
.execute();
|
||||
assertEquals("http://example.com/fhir/Patient", capt.getAllValues().get(idx).getURI().toString());
|
||||
idx++;
|
||||
}
|
||||
|
||||
@Test
|
||||
public void testSearchByDate() throws Exception {
|
||||
final String msg = "{\"resourceType\":\"Bundle\",\"id\":null,\"base\":\"http://localhost:57931/fhir/contextDev\",\"total\":1,\"link\":[{\"relation\":\"self\",\"url\":\"http://localhost:57931/fhir/contextDev/Patient?identifier=urn%3AMultiFhirVersionTest%7CtestSubmitPatient01&_format=json\"}],\"entry\":[{\"resource\":{\"resourceType\":\"Patient\",\"id\":\"1\",\"meta\":{\"versionId\":\"1\",\"lastUpdated\":\"2014-12-20T18:41:29.706-05:00\"},\"identifier\":[{\"system\":\"urn:MultiFhirVersionTest\",\"value\":\"testSubmitPatient01\"}]}}]}";
|
||||
|
|
|
|||
|
|
@ -43,7 +43,6 @@ import ca.uhn.fhir.rest.annotation.Sort;
|
|||
import ca.uhn.fhir.rest.api.SortOrderEnum;
|
||||
import ca.uhn.fhir.rest.api.SortSpec;
|
||||
import ca.uhn.fhir.rest.client.api.IRestfulClient;
|
||||
import ca.uhn.fhir.rest.param.DateParam;
|
||||
import ca.uhn.fhir.rest.param.StringParam;
|
||||
import ca.uhn.fhir.rest.server.Constants;
|
||||
import ca.uhn.fhir.util.TestUtil;
|
||||
|
|
|
|||
|
|
@ -32,6 +32,11 @@
|
|||
Fix HTTP 500 error in JPA server if a numeric search parameter was supplied with no value, e.g.
|
||||
<![CDATA[<code>GET /Observation?value-quantity=</code>]]>
|
||||
</action>
|
||||
<action type="add">
|
||||
JPA server transaction processing now honours the Prefer header and includes
|
||||
created and updated resource bodies in the response bundle if it is set
|
||||
appropriately.
|
||||
</action>
|
||||
<action type="add">
|
||||
Optimize queries in JPA server remove a few redundant select columns when performing
|
||||
searches. This provides a slight speed increase in some cases.
|
||||
|
|
|
|||
Loading…
Reference in New Issue