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* Add source_resource_id column 

* Add source_resource columm
Still need to depracate the old columns.
Reworked a Matcher to ignore Person
This commit is contained in:
Tadgh 2020-11-05 13:07:45 -05:00
parent ef2041d89d
commit 5797cd0682
25 changed files with 217 additions and 182 deletions
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56
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/entity/EmpiLink.java
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@ -60,6 +60,13 @@ public class EmpiLink {
@Column(name = "PID") @Column(name = "PID")
private Long myId; private Long myId;
@ManyToOne(optional = false, fetch = FetchType.LAZY, cascade = {})
@JoinColumn(name = "SOURCE_RESOURCE_PID", referencedColumnName = "RES_ID", foreignKey = @ForeignKey(name = "FK_EMPI_LINK_SOURCE_RESOURCE"), insertable=false, updatable=false, nullable=false)
private ResourceTable mySourceResource;
@Column(name = "SOURCE_RESOURCE_PID", nullable=false)
private Long mySourceResourcePid;
@ManyToOne(optional = false, fetch = FetchType.LAZY, cascade = {}) @ManyToOne(optional = false, fetch = FetchType.LAZY, cascade = {})
@JoinColumn(name = "PERSON_PID", referencedColumnName = "RES_ID", foreignKey = @ForeignKey(name = "FK_EMPI_LINK_PERSON"), insertable=false, updatable=false, nullable=false) @JoinColumn(name = "PERSON_PID", referencedColumnName = "RES_ID", foreignKey = @ForeignKey(name = "FK_EMPI_LINK_PERSON"), insertable=false, updatable=false, nullable=false)
private ResourceTable myPerson; private ResourceTable myPerson;
@ -99,7 +106,7 @@ public class EmpiLink {
/** This link created a new person **/ /** This link created a new person **/
@Column(name = "NEW_PERSON") @Column(name = "NEW_PERSON")
private Boolean myNewPerson; private Boolean myHadToCreateNewResource;
@Column(name = "VECTOR") @Column(name = "VECTOR")
private Long myVector; private Long myVector;
@ -107,6 +114,10 @@ public class EmpiLink {
@Column(name = "SCORE") @Column(name = "SCORE")
private Double myScore; private Double myScore;
//TODO GGG GL-1340
@Column(name = "RULE_COUNT")
private Long myRuleCount;
public EmpiLink() {} public EmpiLink() {}
public EmpiLink(String theVersion) { public EmpiLink(String theVersion) {
@ -125,18 +136,18 @@ public class EmpiLink {
return this; return this;
} }
public ResourceTable getPerson() { public ResourceTable getSourceResource() {
return myPerson; return mySourceResource;
} }
public EmpiLink setPerson(ResourceTable thePerson) { public EmpiLink setSourceResource(ResourceTable theSourceResource) {
myPerson = thePerson; mySourceResource = theSourceResource;
myPersonPid = thePerson.getId(); mySourceResourcePid = theSourceResource.getId();
return this; return this;
} }
public Long getPersonPid() { public Long getSourceResourcePid() {
return myPersonPid; return mySourceResourcePid;
} }
public EmpiLink setPersonPid(Long thePersonPid) { public EmpiLink setPersonPid(Long thePersonPid) {
@ -144,6 +155,11 @@ public class EmpiLink {
return this; return this;
} }
public EmpiLink setSourceResourcePid(Long theSourceResourcePid) {
mySourceResourcePid = theSourceResourcePid;
return this;
}
public ResourceTable getTarget() { public ResourceTable getTarget() {
return myTarget; return myTarget;
} }
@ -267,16 +283,12 @@ public class EmpiLink {
return this; return this;
} }
public Boolean getNewPerson() { public boolean getHadToCreateNewResource() {
return myNewPerson; return myHadToCreateNewResource != null && myHadToCreateNewResource;
} }
public boolean isNewPerson() { public EmpiLink setHadToCreateNewResource(Boolean theHadToCreateNewResource) {
return myNewPerson != null && myNewPerson; myHadToCreateNewResource = theHadToCreateNewResource;
}
public EmpiLink setNewPerson(Boolean theNewPerson) {
myNewPerson = theNewPerson;
return this; return this;
} }
@ -289,13 +301,13 @@ public class EmpiLink {
public String toString() { public String toString() {
return new ToStringBuilder(this) return new ToStringBuilder(this)
.append("myId", myId) .append("myId", myId)
.append("myPersonPid", myPersonPid) .append("myPersonPid", mySourceResourcePid)
.append("myTargetPid", myTargetPid) .append("myTargetPid", myTargetPid)
.append("myEmpiTargetType", myEmpiTargetType) .append("myEmpiTargetType", myEmpiTargetType)
.append("myMatchResult", myMatchResult) .append("myMatchResult", myMatchResult)
.append("myLinkSource", myLinkSource) .append("myLinkSource", myLinkSource)
.append("myEidMatch", myEidMatch) .append("myEidMatch", myEidMatch)
.append("myNewPerson", myNewPerson) .append("myNewPerson", myHadToCreateNewResource)
.append("myScore", myScore) .append("myScore", myScore)
.toString(); .toString();
} }
@ -303,4 +315,12 @@ public class EmpiLink {
public String getEmpiTargetType() { public String getEmpiTargetType() {
return myEmpiTargetType; return myEmpiTargetType;
} }
public Long getRuleCount() {
return myRuleCount;
}
public void setRuleCount(Long theRuleCount) {
myRuleCount = theRuleCount;
}
} }

11
hapi-fhir-jpaserver-empi/src/main/java/ca/uhn/fhir/jpa/empi/dao/EmpiLinkDaoSvc.java
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@ -68,7 +68,7 @@ public class EmpiLinkDaoSvc {
empiLink.setMatchResult(theMatchOutcome.getMatchResultEnum()); empiLink.setMatchResult(theMatchOutcome.getMatchResultEnum());
// Preserve these flags for link updates // Preserve these flags for link updates
empiLink.setEidMatch(theMatchOutcome.isEidMatch() | empiLink.isEidMatch()); empiLink.setEidMatch(theMatchOutcome.isEidMatch() | empiLink.isEidMatch());
empiLink.setNewPerson(theMatchOutcome.isNewPerson() | empiLink.isNewPerson()); empiLink.setHadToCreateNewResource(theMatchOutcome.isNewPerson() | empiLink.getHadToCreateNewResource());
empiLink.setEmpiTargetType(myFhirContext.getResourceType(theTarget)); empiLink.setEmpiTargetType(myFhirContext.getResourceType(theTarget));
if (empiLink.getScore() != null) { if (empiLink.getScore() != null) {
empiLink.setScore(Math.max(theMatchOutcome.score, empiLink.getScore())); empiLink.setScore(Math.max(theMatchOutcome.score, empiLink.getScore()));
@ -90,6 +90,7 @@ public class EmpiLinkDaoSvc {
return oExisting.get(); return oExisting.get();
} else { } else {
EmpiLink newLink = myEmpiLinkFactory.newEmpiLink(); EmpiLink newLink = myEmpiLinkFactory.newEmpiLink();
newLink.setSourceResourcePid(thePersonPid);
newLink.setPersonPid(thePersonPid); newLink.setPersonPid(thePersonPid);
newLink.setTargetPid(theResourcePid); newLink.setTargetPid(theResourcePid);
return newLink; return newLink;
@ -103,7 +104,7 @@ public class EmpiLinkDaoSvc {
} }
EmpiLink link = myEmpiLinkFactory.newEmpiLink(); EmpiLink link = myEmpiLinkFactory.newEmpiLink();
link.setTargetPid(theTargetPid); link.setTargetPid(theTargetPid);
link.setPersonPid(thePersonPid); link.setSourceResourcePid(thePersonPid);
Example<EmpiLink> example = Example.of(link); Example<EmpiLink> example = Example.of(link);
return myEmpiLinkDao.findOne(example); return myEmpiLinkDao.findOne(example);
} }
@ -170,7 +171,7 @@ public class EmpiLinkDaoSvc {
*/ */
public Optional<EmpiLink> getEmpiLinksByPersonPidTargetPidAndMatchResult(Long thePersonPid, Long theTargetPid, EmpiMatchResultEnum theMatchResult) { public Optional<EmpiLink> getEmpiLinksByPersonPidTargetPidAndMatchResult(Long thePersonPid, Long theTargetPid, EmpiMatchResultEnum theMatchResult) {
EmpiLink exampleLink = myEmpiLinkFactory.newEmpiLink(); EmpiLink exampleLink = myEmpiLinkFactory.newEmpiLink();
exampleLink.setPersonPid(thePersonPid); exampleLink.setSourceResourcePid(thePersonPid);
exampleLink.setTargetPid(theTargetPid); exampleLink.setTargetPid(theTargetPid);
exampleLink.setMatchResult(theMatchResult); exampleLink.setMatchResult(theMatchResult);
Example<EmpiLink> example = Example.of(exampleLink); Example<EmpiLink> example = Example.of(exampleLink);
@ -222,7 +223,7 @@ public class EmpiLinkDaoSvc {
if (pid == null) { if (pid == null) {
return Collections.emptyList(); return Collections.emptyList();
} }
EmpiLink exampleLink = myEmpiLinkFactory.newEmpiLink().setPersonPid(pid); EmpiLink exampleLink = myEmpiLinkFactory.newEmpiLink().setSourceResourcePid(pid);
Example<EmpiLink> example = Example.of(exampleLink); Example<EmpiLink> example = Example.of(exampleLink);
return myEmpiLinkDao.findAll(example); return myEmpiLinkDao.findAll(example);
} }
@ -239,7 +240,7 @@ public class EmpiLinkDaoSvc {
} }
private List<Long> deleteEmpiLinksAndReturnPersonPids(List<EmpiLink> theLinks) { private List<Long> deleteEmpiLinksAndReturnPersonPids(List<EmpiLink> theLinks) {
Set<Long> persons = theLinks.stream().map(EmpiLink::getPersonPid).collect(Collectors.toSet()); Set<Long> persons = theLinks.stream().map(EmpiLink::getSourceResourcePid).collect(Collectors.toSet());
persons.addAll(theLinks.stream().filter(link -> "Person".equals(link.getEmpiTargetType())).map(EmpiLink::getTargetPid).collect(Collectors.toSet())); persons.addAll(theLinks.stream().filter(link -> "Person".equals(link.getEmpiTargetType())).map(EmpiLink::getTargetPid).collect(Collectors.toSet()));
ourLog.info("Deleting {} EMPI link records...", theLinks.size()); ourLog.info("Deleting {} EMPI link records...", theLinks.size());
myEmpiLinkDao.deleteAll(theLinks); myEmpiLinkDao.deleteAll(theLinks);

4
hapi-fhir-jpaserver-empi/src/main/java/ca/uhn/fhir/jpa/empi/svc/EmpiEidUpdateService.java
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@ -103,7 +103,7 @@ public class EmpiEidUpdateService {
} }
private boolean candidateIsSameAsEmpiLinkPerson(EmpiLink theExistingMatchLink, MatchedPersonCandidate thePersonCandidate) { private boolean candidateIsSameAsEmpiLinkPerson(EmpiLink theExistingMatchLink, MatchedPersonCandidate thePersonCandidate) {
return theExistingMatchLink.getPersonPid().equals(thePersonCandidate.getCandidatePersonPid().getIdAsLong()); return theExistingMatchLink.getSourceResourcePid().equals(thePersonCandidate.getCandidatePersonPid().getIdAsLong());
} }
private void createNewPersonAndFlagAsDuplicate(IAnyResource theResource, EmpiTransactionContext theEmpiTransactionContext, IAnyResource theOldPerson) { private void createNewPersonAndFlagAsDuplicate(IAnyResource theResource, EmpiTransactionContext theEmpiTransactionContext, IAnyResource theOldPerson) {
@ -151,7 +151,7 @@ public class EmpiEidUpdateService {
myExistingPerson = null; myExistingPerson = null;
if (theExistingMatchLink.isPresent()) { if (theExistingMatchLink.isPresent()) {
Long existingPersonPid = theExistingMatchLink.get().getPersonPid(); Long existingPersonPid = theExistingMatchLink.get().getSourceResourcePid();
myExistingPerson = myEmpiResourceDaoSvc.readPersonByPid(new ResourcePersistentId(existingPersonPid)); myExistingPerson = myEmpiResourceDaoSvc.readPersonByPid(new ResourcePersistentId(existingPersonPid));
myRemainsMatchedToSamePerson = candidateIsSameAsEmpiLinkPerson(theExistingMatchLink.get(), theMatchedPersonCandidate); myRemainsMatchedToSamePerson = candidateIsSameAsEmpiLinkPerson(theExistingMatchLink.get(), theMatchedPersonCandidate);
} else { } else {

8
hapi-fhir-jpaserver-empi/src/main/java/ca/uhn/fhir/jpa/empi/svc/EmpiLinkQuerySvcImpl.java
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@ -52,8 +52,6 @@ public class EmpiLinkQuerySvcImpl implements IEmpiLinkQuerySvc {
.map(this::toJson); .map(this::toJson);
} }
@Override @Override
public Stream<EmpiLinkJson> getDuplicatePersons(EmpiTransactionContext theEmpiContext) { public Stream<EmpiLinkJson> getDuplicatePersons(EmpiTransactionContext theEmpiContext) {
Example<EmpiLink> exampleLink = exampleLinkFromParameters(null, null, EmpiMatchResultEnum.POSSIBLE_DUPLICATE, null); Example<EmpiLink> exampleLink = exampleLinkFromParameters(null, null, EmpiMatchResultEnum.POSSIBLE_DUPLICATE, null);
@ -64,13 +62,13 @@ public class EmpiLinkQuerySvcImpl implements IEmpiLinkQuerySvc {
EmpiLinkJson retval = new EmpiLinkJson(); EmpiLinkJson retval = new EmpiLinkJson();
String targetId = myIdHelperService.resourceIdFromPidOrThrowException(theLink.getTargetPid()).toVersionless().getValue(); String targetId = myIdHelperService.resourceIdFromPidOrThrowException(theLink.getTargetPid()).toVersionless().getValue();
retval.setTargetId(targetId); retval.setTargetId(targetId);
String personId = myIdHelperService.resourceIdFromPidOrThrowException(theLink.getPersonPid()).toVersionless().getValue(); String personId = myIdHelperService.resourceIdFromPidOrThrowException(theLink.getSourceResourcePid()).toVersionless().getValue();
retval.setPersonId(personId); retval.setPersonId(personId);
retval.setCreated(theLink.getCreated()); retval.setCreated(theLink.getCreated());
retval.setEidMatch(theLink.getEidMatch()); retval.setEidMatch(theLink.getEidMatch());
retval.setLinkSource(theLink.getLinkSource()); retval.setLinkSource(theLink.getLinkSource());
retval.setMatchResult(theLink.getMatchResult()); retval.setMatchResult(theLink.getMatchResult());
retval.setNewPerson(theLink.getNewPerson()); retval.setNewPerson(theLink.getHadToCreateNewResource());
retval.setScore(theLink.getScore()); retval.setScore(theLink.getScore());
retval.setUpdated(theLink.getUpdated()); retval.setUpdated(theLink.getUpdated());
retval.setVector(theLink.getVector()); retval.setVector(theLink.getVector());
@ -81,7 +79,7 @@ public class EmpiLinkQuerySvcImpl implements IEmpiLinkQuerySvc {
private Example<EmpiLink> exampleLinkFromParameters(IIdType thePersonId, IIdType theTargetId, EmpiMatchResultEnum theMatchResult, EmpiLinkSourceEnum theLinkSource) { private Example<EmpiLink> exampleLinkFromParameters(IIdType thePersonId, IIdType theTargetId, EmpiMatchResultEnum theMatchResult, EmpiLinkSourceEnum theLinkSource) {
EmpiLink empiLink = myEmpiLinkDaoSvc.newEmpiLink(); EmpiLink empiLink = myEmpiLinkDaoSvc.newEmpiLink();
if (thePersonId != null) { if (thePersonId != null) {
empiLink.setPersonPid(myIdHelperService.getPidOrThrowException(thePersonId)); empiLink.setSourceResourcePid(myIdHelperService.getPidOrThrowException(thePersonId));
} }
if (theTargetId != null) { if (theTargetId != null) {
empiLink.setTargetPid(myIdHelperService.getPidOrThrowException(theTargetId)); empiLink.setTargetPid(myIdHelperService.getPidOrThrowException(theTargetId));

2
hapi-fhir-jpaserver-empi/src/main/java/ca/uhn/fhir/jpa/empi/svc/EmpiPersonMergerSvcImpl.java
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@ -116,7 +116,7 @@ public class EmpiPersonMergerSvcImpl implements IEmpiPersonMergerSvc {
} }
} }
// The original links didn't contain this target, so move it over to the toPerson // The original links didn't contain this target, so move it over to the toPerson
fromLink.setPersonPid(theToPersonPid); fromLink.setSourceResourcePid(theToPersonPid);
ourLog.trace("Saving link {}", fromLink); ourLog.trace("Saving link {}", fromLink);
myEmpiLinkDaoSvc.save(fromLink); myEmpiLinkDaoSvc.save(fromLink);
} }

2
hapi-fhir-jpaserver-empi/src/main/java/ca/uhn/fhir/jpa/empi/svc/candidate/FindCandidateByLinkSvc.java
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@ -49,7 +49,7 @@ public class FindCandidateByLinkSvc extends BaseCandidateFinder {
if (targetPid != null) { if (targetPid != null) {
Optional<EmpiLink> oLink = myEmpiLinkDaoSvc.getMatchedLinkForTargetPid(targetPid); Optional<EmpiLink> oLink = myEmpiLinkDaoSvc.getMatchedLinkForTargetPid(targetPid);
if (oLink.isPresent()) { if (oLink.isPresent()) {
ResourcePersistentId personPid = new ResourcePersistentId(oLink.get().getPersonPid()); ResourcePersistentId personPid = new ResourcePersistentId(oLink.get().getSourceResourcePid());
ourLog.debug("Resource previously linked. Using existing link."); ourLog.debug("Resource previously linked. Using existing link.");
retval.add(new MatchedPersonCandidate(personPid, oLink.get())); retval.add(new MatchedPersonCandidate(personPid, oLink.get()));
} }

8
hapi-fhir-jpaserver-empi/src/main/java/ca/uhn/fhir/jpa/empi/svc/candidate/FindCandidateByScoreSvc.java
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@ -82,12 +82,12 @@ public class FindCandidateByScoreSvc extends BaseCandidateFinder {
} }
EmpiLink matchEmpiLink = optMatchEmpiLink.get(); EmpiLink matchEmpiLink = optMatchEmpiLink.get();
if (personPidsToExclude.contains(matchEmpiLink.getPersonPid())) { if (personPidsToExclude.contains(matchEmpiLink.getSourceResourcePid())) {
ourLog.info("Skipping EMPI on candidate person with PID {} due to manual NO_MATCH", matchEmpiLink.getPersonPid()); ourLog.info("Skipping EMPI on candidate person with PID {} due to manual NO_MATCH", matchEmpiLink.getSourceResourcePid());
continue; continue;
} }
MatchedPersonCandidate candidate = new MatchedPersonCandidate(getResourcePersistentId(matchEmpiLink.getPersonPid()), match.getMatchResult()); MatchedPersonCandidate candidate = new MatchedPersonCandidate(getResourcePersistentId(matchEmpiLink.getSourceResourcePid()), match.getMatchResult());
retval.add(candidate); retval.add(candidate);
} }
return retval; return retval;
@ -97,7 +97,7 @@ public class FindCandidateByScoreSvc extends BaseCandidateFinder {
Long targetPid = myIdHelperService.getPidOrNull(theBaseResource); Long targetPid = myIdHelperService.getPidOrNull(theBaseResource);
return myEmpiLinkDaoSvc.getEmpiLinksByTargetPidAndMatchResult(targetPid, EmpiMatchResultEnum.NO_MATCH) return myEmpiLinkDaoSvc.getEmpiLinksByTargetPidAndMatchResult(targetPid, EmpiMatchResultEnum.NO_MATCH)
.stream() .stream()
.map(EmpiLink::getPersonPid) .map(EmpiLink::getSourceResourcePid)
.collect(Collectors.toList()); .collect(Collectors.toList());
} }

16
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/BaseEmpiR4Test.java
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@ -23,7 +23,7 @@ import ca.uhn.fhir.jpa.empi.matcher.IsMatchedToAPerson;
import ca.uhn.fhir.jpa.empi.matcher.IsPossibleDuplicateOf; import ca.uhn.fhir.jpa.empi.matcher.IsPossibleDuplicateOf;
import ca.uhn.fhir.jpa.empi.matcher.IsPossibleLinkedTo; import ca.uhn.fhir.jpa.empi.matcher.IsPossibleLinkedTo;
import ca.uhn.fhir.jpa.empi.matcher.IsPossibleMatchWith; import ca.uhn.fhir.jpa.empi.matcher.IsPossibleMatchWith;
import ca.uhn.fhir.jpa.empi.matcher.IsSamePersonAs; import ca.uhn.fhir.jpa.empi.matcher.IsSameSourceResourceAs;
import ca.uhn.fhir.jpa.empi.svc.EmpiMatchLinkSvc; import ca.uhn.fhir.jpa.empi.svc.EmpiMatchLinkSvc;
import ca.uhn.fhir.jpa.entity.EmpiLink; import ca.uhn.fhir.jpa.entity.EmpiLink;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap; import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
@ -272,7 +272,7 @@ abstract public class BaseEmpiR4Test extends BaseJpaR4Test {
protected Person getPersonFromTarget(IAnyResource theBaseResource) { protected Person getPersonFromTarget(IAnyResource theBaseResource) {
Optional<EmpiLink> matchedLinkForTargetPid = myEmpiLinkDaoSvc.getMatchedLinkForTargetPid(myIdHelperService.getPidOrNull(theBaseResource)); Optional<EmpiLink> matchedLinkForTargetPid = myEmpiLinkDaoSvc.getMatchedLinkForTargetPid(myIdHelperService.getPidOrNull(theBaseResource));
if (matchedLinkForTargetPid.isPresent()) { if (matchedLinkForTargetPid.isPresent()) {
Long personPid = matchedLinkForTargetPid.get().getPersonPid(); Long personPid = matchedLinkForTargetPid.get().getSourceResourcePid();
return (Person) myPersonDao.readByPid(new ResourcePersistentId(personPid)); return (Person) myPersonDao.readByPid(new ResourcePersistentId(personPid));
} else { } else {
return null; return null;
@ -280,7 +280,7 @@ abstract public class BaseEmpiR4Test extends BaseJpaR4Test {
} }
protected Person getPersonFromEmpiLink(EmpiLink theEmpiLink) { protected Person getPersonFromEmpiLink(EmpiLink theEmpiLink) {
return (Person) myPersonDao.readByPid(new ResourcePersistentId(theEmpiLink.getPersonPid())); return (Person) myPersonDao.readByPid(new ResourcePersistentId(theEmpiLink.getSourceResourcePid()));
} }
protected Patient addExternalEID(Patient thePatient, String theEID) { protected Patient addExternalEID(Patient thePatient, String theEID) {
@ -332,8 +332,8 @@ abstract public class BaseEmpiR4Test extends BaseJpaR4Test {
return thePractitioner; return thePractitioner;
} }
protected Matcher<IAnyResource> samePersonAs(IAnyResource... theBaseResource) { protected Matcher<IAnyResource> sameSourceResourceAs(IAnyResource... theBaseResource) {
return IsSamePersonAs.samePersonAs(myIdHelperService, myEmpiLinkDaoSvc, theBaseResource); return IsSameSourceResourceAs.sameSourceResourceAs(myIdHelperService, myEmpiLinkDaoSvc, theBaseResource);
} }
protected Matcher<IAnyResource> linkedTo(IAnyResource... theBaseResource) { protected Matcher<IAnyResource> linkedTo(IAnyResource... theBaseResource) {
@ -391,7 +391,7 @@ abstract public class BaseEmpiR4Test extends BaseJpaR4Test {
EmpiLink empiLink = myEmpiLinkDaoSvc.newEmpiLink(); EmpiLink empiLink = myEmpiLinkDaoSvc.newEmpiLink();
empiLink.setLinkSource(EmpiLinkSourceEnum.MANUAL); empiLink.setLinkSource(EmpiLinkSourceEnum.MANUAL);
empiLink.setMatchResult(EmpiMatchResultEnum.MATCH); empiLink.setMatchResult(EmpiMatchResultEnum.MATCH);
empiLink.setPersonPid(myIdHelperService.getPidOrNull(person)); empiLink.setSourceResourcePid(myIdHelperService.getPidOrNull(person));
empiLink.setTargetPid(myIdHelperService.getPidOrNull(patient)); empiLink.setTargetPid(myIdHelperService.getPidOrNull(patient));
return empiLink; return empiLink;
} }
@ -413,8 +413,8 @@ abstract public class BaseEmpiR4Test extends BaseJpaR4Test {
assertFields(EmpiLink::getMatchResult, theExpectedValues); assertFields(EmpiLink::getMatchResult, theExpectedValues);
} }
protected void assertLinksNewPerson(Boolean... theExpectedValues) { protected void assertLinksCreatedNewResource(Boolean... theExpectedValues) {
assertFields(EmpiLink::getNewPerson, theExpectedValues); assertFields(EmpiLink::getHadToCreateNewResource, theExpectedValues);
} }
protected void assertLinksMatchedByEid(Boolean... theExpectedValues) { protected void assertLinksMatchedByEid(Boolean... theExpectedValues) {

2
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/helper/EmpiLinkHelper.java
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@ -23,7 +23,7 @@ public class EmpiLinkHelper {
List<EmpiLink> links = myEmpiLinkDao.findAll(); List<EmpiLink> links = myEmpiLinkDao.findAll();
ourLog.info("All EMPI Links:"); ourLog.info("All EMPI Links:");
for (EmpiLink link : links) { for (EmpiLink link : links) {
IdDt personId = link.getPerson().getIdDt().toVersionless(); IdDt personId = link.getSourceResource().getIdDt().toVersionless();
IdDt targetId = link.getTarget().getIdDt().toVersionless(); IdDt targetId = link.getTarget().getIdDt().toVersionless();
ourLog.info("{}: {}, {}, {}, {}", link.getId(), personId, targetId, link.getMatchResult(), link.getLinkSource()); ourLog.info("{}: {}, {}, {}, {}", link.getId(), personId, targetId, link.getMatchResult(), link.getLinkSource());
} }

2
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/interceptor/EmpiExpungeTest.java
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@ -48,7 +48,7 @@ public class EmpiExpungeTest extends BaseEmpiR4Test {
EmpiLink empiLink = myEmpiLinkDaoSvc.newEmpiLink(); EmpiLink empiLink = myEmpiLinkDaoSvc.newEmpiLink();
empiLink.setLinkSource(EmpiLinkSourceEnum.MANUAL); empiLink.setLinkSource(EmpiLinkSourceEnum.MANUAL);
empiLink.setMatchResult(EmpiMatchResultEnum.MATCH); empiLink.setMatchResult(EmpiMatchResultEnum.MATCH);
empiLink.setPersonPid(myPersonEntity.getId()); empiLink.setSourceResourcePid(myPersonEntity.getId());
empiLink.setTargetPid(myTargetEntity.getId()); empiLink.setTargetPid(myTargetEntity.getId());
saveLink(empiLink); saveLink(empiLink);
} }

2
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/interceptor/EmpiStorageInterceptorIT.java
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@ -174,7 +174,7 @@ public class EmpiStorageInterceptorIT extends BaseEmpiR4Test {
//Updating a Person who was created via EMPI should fail. //Updating a Person who was created via EMPI should fail.
EmpiLink empiLink = myEmpiLinkDaoSvc.getMatchedLinkForTargetPid(myIdHelperService.getPidOrNull(patient)).get(); EmpiLink empiLink = myEmpiLinkDaoSvc.getMatchedLinkForTargetPid(myIdHelperService.getPidOrNull(patient)).get();
Long personPid = empiLink.getPersonPid(); Long personPid = empiLink.getSourceResourcePid();
Person empiPerson = (Person) myPersonDao.readByPid(new ResourcePersistentId(personPid)); Person empiPerson = (Person) myPersonDao.readByPid(new ResourcePersistentId(personPid));
empiPerson.setGender(Enumerations.AdministrativeGender.MALE); empiPerson.setGender(Enumerations.AdministrativeGender.MALE);
try { try {

34
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/matcher/BasePersonMatcher.java → hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/matcher/BaseSourceResourceMatcher.java
View File

@ -16,40 +16,32 @@ import java.util.Collection;
import java.util.List; import java.util.List;
import java.util.stream.Collectors; import java.util.stream.Collectors;
public abstract class BasePersonMatcher extends TypeSafeMatcher<IAnyResource> { public abstract class BaseSourceResourceMatcher extends TypeSafeMatcher<IAnyResource> {
private static final Logger ourLog = LoggerFactory.getLogger(BasePersonMatcher.class); private static final Logger ourLog = LoggerFactory.getLogger(BaseSourceResourceMatcher.class);
protected IdHelperService myIdHelperService; protected IdHelperService myIdHelperService;
protected EmpiLinkDaoSvc myEmpiLinkDaoSvc; protected EmpiLinkDaoSvc myEmpiLinkDaoSvc;
protected Collection<IAnyResource> myBaseResources; protected Collection<IAnyResource> myBaseResources;
protected String myTargetType;
protected BasePersonMatcher(IdHelperService theIdHelperService, EmpiLinkDaoSvc theEmpiLinkDaoSvc, IAnyResource... theBaseResource) { protected BaseSourceResourceMatcher(IdHelperService theIdHelperService, EmpiLinkDaoSvc theEmpiLinkDaoSvc, IAnyResource... theBaseResource) {
myIdHelperService = theIdHelperService; myIdHelperService = theIdHelperService;
myEmpiLinkDaoSvc = theEmpiLinkDaoSvc; myEmpiLinkDaoSvc = theEmpiLinkDaoSvc;
myBaseResources = Arrays.stream(theBaseResource).collect(Collectors.toList()); myBaseResources = Arrays.stream(theBaseResource).collect(Collectors.toList());
} }
@Nullable @Nullable
protected Long getMatchedPersonPidFromResource(IAnyResource theResource) { protected Long getMatchedResourcePidFromResource(IAnyResource theResource) {
Long retval; Long retval;
if (isPatientOrPractitioner(theResource)) { EmpiLink matchLink = getMatchedEmpiLink(theResource);
EmpiLink matchLink = getMatchedEmpiLink(theResource); myTargetType = matchLink.getEmpiTargetType();
retval = matchLink == null ? null : matchLink.getPersonPid(); //TODO if this is already a golden record resource, we can just use its PID instead of doing a lookup.
} else if (isPerson(theResource)) { retval = matchLink == null ? null : matchLink.getSourceResourcePid();
retval = myIdHelperService.getPidOrNull(theResource);
} else {
throw new IllegalArgumentException("Resources of type " + theResource.getIdElement().getResourceType() + " cannot be persons!");
}
return retval; return retval;
} }
protected List<Long> getPossibleMatchedPersonPidsFromTarget(IAnyResource theBaseResource) { protected List<Long> getPossibleMatchedSourceResourcePidsFromTarget(IAnyResource theBaseResource) {
return getEmpiLinksForTarget(theBaseResource, EmpiMatchResultEnum.POSSIBLE_MATCH).stream().map(EmpiLink::getPersonPid).collect(Collectors.toList()); return getEmpiLinksForTarget(theBaseResource, EmpiMatchResultEnum.POSSIBLE_MATCH).stream().map(EmpiLink::getSourceResourcePid).collect(Collectors.toList());
}
protected boolean isPatientOrPractitioner(IAnyResource theResource) {
String resourceType = theResource.getIdElement().getResourceType();
return (resourceType.equalsIgnoreCase("Patient") || resourceType.equalsIgnoreCase("Practitioner"));
} }
protected EmpiLink getMatchedEmpiLink(IAnyResource thePatientOrPractitionerResource) { protected EmpiLink getMatchedEmpiLink(IAnyResource thePatientOrPractitionerResource) {
@ -63,10 +55,6 @@ public abstract class BasePersonMatcher extends TypeSafeMatcher<IAnyResource> {
} }
} }
protected boolean isPerson(IAnyResource theIncomingResource) {
return (theIncomingResource.getIdElement().getResourceType().equalsIgnoreCase("Person"));
}
protected List<EmpiLink> getEmpiLinksForTarget(IAnyResource thePatientOrPractitionerResource, EmpiMatchResultEnum theMatchResult) { protected List<EmpiLink> getEmpiLinksForTarget(IAnyResource thePatientOrPractitionerResource, EmpiMatchResultEnum theMatchResult) {
Long pidOrNull = myIdHelperService.getPidOrNull(thePatientOrPractitionerResource); Long pidOrNull = myIdHelperService.getPidOrNull(thePatientOrPractitionerResource);
List<EmpiLink> matchLinkForTarget = myEmpiLinkDaoSvc.getEmpiLinksByTargetPidAndMatchResult(pidOrNull, theMatchResult); List<EmpiLink> matchLinkForTarget = myEmpiLinkDaoSvc.getEmpiLinksByTargetPidAndMatchResult(pidOrNull, theMatchResult);

6
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/matcher/IsLinkedTo.java
View File

@ -14,7 +14,7 @@ import java.util.stream.Collectors;
* is linked to a set of patients/practitioners via a person. * is linked to a set of patients/practitioners via a person.
* *
*/ */
public class IsLinkedTo extends BasePersonMatcher { public class IsLinkedTo extends BaseSourceResourceMatcher {
private List<Long> baseResourcePersonPids; private List<Long> baseResourcePersonPids;
private Long incomingResourcePersonPid; private Long incomingResourcePersonPid;
@ -26,11 +26,11 @@ public class IsLinkedTo extends BasePersonMatcher {
@Override @Override
protected boolean matchesSafely(IAnyResource theIncomingResource) { protected boolean matchesSafely(IAnyResource theIncomingResource) {
incomingResourcePersonPid = getMatchedPersonPidFromResource(theIncomingResource); incomingResourcePersonPid = getMatchedResourcePidFromResource(theIncomingResource);
//OK, lets grab all the person pids of the resources passed in via the constructor. //OK, lets grab all the person pids of the resources passed in via the constructor.
baseResourcePersonPids = myBaseResources.stream() baseResourcePersonPids = myBaseResources.stream()
.map(this::getMatchedPersonPidFromResource) .map(this::getMatchedResourcePidFromResource)
.collect(Collectors.toList()); .collect(Collectors.toList());
//The resources are linked if all person pids match the incoming person pid. //The resources are linked if all person pids match the incoming person pid.

6
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/matcher/IsPossibleDuplicateOf.java
View File

@ -12,7 +12,7 @@ import java.util.List;
import java.util.Optional; import java.util.Optional;
import java.util.stream.Collectors; import java.util.stream.Collectors;
public class IsPossibleDuplicateOf extends BasePersonMatcher { public class IsPossibleDuplicateOf extends BaseSourceResourceMatcher {
/** /**
* Matcher with tells us if there is an EmpiLink with between these two resources that are considered POSSIBLE DUPLICATE. * Matcher with tells us if there is an EmpiLink with between these two resources that are considered POSSIBLE DUPLICATE.
* For use only on persons. * For use only on persons.
@ -26,10 +26,10 @@ public class IsPossibleDuplicateOf extends BasePersonMatcher {
@Override @Override
protected boolean matchesSafely(IAnyResource theIncomingResource) { protected boolean matchesSafely(IAnyResource theIncomingResource) {
incomingPersonPid = getMatchedPersonPidFromResource(theIncomingResource); incomingPersonPid = getMatchedResourcePidFromResource(theIncomingResource);
List<Long> personPidsToMatch = myBaseResources.stream() List<Long> personPidsToMatch = myBaseResources.stream()
.map(this::getMatchedPersonPidFromResource) .map(this::getMatchedResourcePidFromResource)
.collect(Collectors.toList()); .collect(Collectors.toList());

4
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/matcher/IsPossibleLinkedTo.java
View File

@ -14,7 +14,7 @@ import java.util.stream.Collectors;
* is linked to a set of patients/practitioners via a person. * is linked to a set of patients/practitioners via a person.
* *
*/ */
public class IsPossibleLinkedTo extends BasePersonMatcher { public class IsPossibleLinkedTo extends BaseSourceResourceMatcher {
private List<Long> baseResourcePersonPids; private List<Long> baseResourcePersonPids;
private Long incomingResourcePersonPid; private Long incomingResourcePersonPid;
@ -29,7 +29,7 @@ public class IsPossibleLinkedTo extends BasePersonMatcher {
//OK, lets grab all the person pids of the resources passed in via the constructor. //OK, lets grab all the person pids of the resources passed in via the constructor.
baseResourcePersonPids = myBaseResources.stream() baseResourcePersonPids = myBaseResources.stream()
.flatMap(iBaseResource -> getPossibleMatchedPersonPidsFromTarget(iBaseResource).stream()) .flatMap(iBaseResource -> getPossibleMatchedSourceResourcePidsFromTarget(iBaseResource).stream())
.collect(Collectors.toList()); .collect(Collectors.toList());
//The resources are linked if all person pids match the incoming person pid. //The resources are linked if all person pids match the incoming person pid.

8
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/matcher/IsPossibleMatchWith.java
View File

@ -15,7 +15,7 @@ import java.util.stream.Collectors;
/** /**
* Matcher with tells us if there is an EmpiLink with between these two resources that are considered POSSIBLE_MATCH * Matcher with tells us if there is an EmpiLink with between these two resources that are considered POSSIBLE_MATCH
*/ */
public class IsPossibleMatchWith extends BasePersonMatcher { public class IsPossibleMatchWith extends BaseSourceResourceMatcher {
protected IsPossibleMatchWith(IdHelperService theIdHelperService, EmpiLinkDaoSvc theEmpiLinkDaoSvc, IAnyResource... theBaseResource) { protected IsPossibleMatchWith(IdHelperService theIdHelperService, EmpiLinkDaoSvc theEmpiLinkDaoSvc, IAnyResource... theBaseResource) {
super(theIdHelperService, theEmpiLinkDaoSvc, theBaseResource); super(theIdHelperService, theEmpiLinkDaoSvc, theBaseResource);
@ -26,17 +26,17 @@ public class IsPossibleMatchWith extends BasePersonMatcher {
List<EmpiLink> empiLinks = getEmpiLinksForTarget(theIncomingResource, EmpiMatchResultEnum.POSSIBLE_MATCH); List<EmpiLink> empiLinks = getEmpiLinksForTarget(theIncomingResource, EmpiMatchResultEnum.POSSIBLE_MATCH);
List<Long> personPidsToMatch = myBaseResources.stream() List<Long> personPidsToMatch = myBaseResources.stream()
.map(this::getMatchedPersonPidFromResource) .map(this::getMatchedResourcePidFromResource)
.filter(Objects::nonNull) .filter(Objects::nonNull)
.collect(Collectors.toList()); .collect(Collectors.toList());
if (personPidsToMatch.isEmpty()) { if (personPidsToMatch.isEmpty()) {
personPidsToMatch = myBaseResources.stream() personPidsToMatch = myBaseResources.stream()
.flatMap(iBaseResource -> getPossibleMatchedPersonPidsFromTarget(iBaseResource).stream()) .flatMap(iBaseResource -> getPossibleMatchedSourceResourcePidsFromTarget(iBaseResource).stream())
.collect(Collectors.toList()); .collect(Collectors.toList());
} }
List<Long> empiLinkSourcePersonPids = empiLinks.stream().map(EmpiLink::getPersonPid).collect(Collectors.toList()); List<Long> empiLinkSourcePersonPids = empiLinks.stream().map(EmpiLink::getSourceResourcePid).collect(Collectors.toList());
return empiLinkSourcePersonPids.containsAll(personPidsToMatch); return empiLinkSourcePersonPids.containsAll(personPidsToMatch);
} }

46
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/matcher/IsSamePersonAs.java
View File

@ -1,46 +0,0 @@
package ca.uhn.fhir.jpa.empi.matcher;
import ca.uhn.fhir.jpa.dao.index.IdHelperService;
import ca.uhn.fhir.jpa.empi.dao.EmpiLinkDaoSvc;
import org.hamcrest.Description;
import org.hamcrest.Matcher;
import org.hl7.fhir.instance.model.api.IAnyResource;
import java.util.List;
import java.util.stream.Collectors;
public class IsSamePersonAs extends BasePersonMatcher {
private List<Long> personPidsToMatch;
private Long incomingPersonPid;
public IsSamePersonAs(IdHelperService theIdHelperService, EmpiLinkDaoSvc theEmpiLinkDaoSvc, IAnyResource... theBaseResource) {
super(theIdHelperService, theEmpiLinkDaoSvc, theBaseResource);
}
@Override
protected boolean matchesSafely(IAnyResource theIncomingResource) {
incomingPersonPid = getMatchedPersonPidFromResource(theIncomingResource);
personPidsToMatch = myBaseResources.stream().map(this::getMatchedPersonPidFromResource).collect(Collectors.toList());
boolean allToCheckAreSame = personPidsToMatch.stream().allMatch(pid -> pid.equals(personPidsToMatch.get(0)));
if (!allToCheckAreSame) {
throw new IllegalStateException("You wanted to do a person comparison, but the pool of persons you submitted for checking don't match! We won't even check the incoming person against them.");
}
return personPidsToMatch.contains(incomingPersonPid);
}
@Override
public void describeTo(Description theDescription) {
theDescription.appendText("patient/practitioner linked to Person/" + personPidsToMatch);
}
@Override
protected void describeMismatchSafely(IAnyResource item, Description mismatchDescription) {
super.describeMismatchSafely(item, mismatchDescription);
mismatchDescription.appendText(" was actually linked to Person/" + incomingPersonPid);
}
public static Matcher<IAnyResource> samePersonAs(IdHelperService theIdHelperService, EmpiLinkDaoSvc theEmpiLinkDaoSvc, IAnyResource... theBaseResource) {
return new IsSamePersonAs(theIdHelperService, theEmpiLinkDaoSvc, theBaseResource);
}
}

46
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/matcher/IsSameSourceResourceAs.java Normal file
View File

@ -0,0 +1,46 @@
package ca.uhn.fhir.jpa.empi.matcher;
import ca.uhn.fhir.jpa.dao.index.IdHelperService;
import ca.uhn.fhir.jpa.empi.dao.EmpiLinkDaoSvc;
import org.hamcrest.Description;
import org.hamcrest.Matcher;
import org.hl7.fhir.instance.model.api.IAnyResource;
import java.util.List;
import java.util.stream.Collectors;
public class IsSameSourceResourceAs extends BaseSourceResourceMatcher {
private List<Long> sourceResourcePidsToMatch;
private Long incomingSourceResourcePid;
public IsSameSourceResourceAs(IdHelperService theIdHelperService, EmpiLinkDaoSvc theEmpiLinkDaoSvc, IAnyResource... theBaseResource) {
super(theIdHelperService, theEmpiLinkDaoSvc, theBaseResource);
}
@Override
protected boolean matchesSafely(IAnyResource theIncomingResource) {
incomingSourceResourcePid = getMatchedResourcePidFromResource(theIncomingResource);
sourceResourcePidsToMatch = myBaseResources.stream().map(this::getMatchedResourcePidFromResource).collect(Collectors.toList());
boolean allToCheckAreSame = sourceResourcePidsToMatch.stream().allMatch(pid -> pid.equals(sourceResourcePidsToMatch.get(0)));
if (!allToCheckAreSame) {
throw new IllegalStateException("You wanted to do a source resource comparison, but the pool of persons you submitted for checking don't match! We won't even check the incoming person against them.");
}
return sourceResourcePidsToMatch.contains(incomingSourceResourcePid);
}
@Override
public void describeTo(Description theDescription) {
theDescription.appendText(String.format(" %s linked to source resource %s/%s", myTargetType, myTargetType, sourceResourcePidsToMatch));
}
@Override
protected void describeMismatchSafely(IAnyResource item, Description mismatchDescription) {
super.describeMismatchSafely(item, mismatchDescription);
mismatchDescription.appendText(String.format(" was actually linked to %s/%s", myTargetType, incomingSourceResourcePid));
}
public static Matcher<IAnyResource> sameSourceResourceAs(IdHelperService theIdHelperService, EmpiLinkDaoSvc theEmpiLinkDaoSvc, IAnyResource... theBaseResource) {
return new IsSameSourceResourceAs(theIdHelperService, theEmpiLinkDaoSvc, theBaseResource);
}
}

2
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/provider/EmpiProviderMergePersonsR4Test.java
View File

@ -42,7 +42,7 @@ public class EmpiProviderMergePersonsR4Test extends BaseProviderR4Test {
public void testMerge() { public void testMerge() {
Person mergedPerson = myEmpiProviderR4.mergePersons(myFromPersonId, myToPersonId, myRequestDetails); Person mergedPerson = myEmpiProviderR4.mergePersons(myFromPersonId, myToPersonId, myRequestDetails);
assertEquals(myToPerson.getIdElement(), mergedPerson.getIdElement()); assertEquals(myToPerson.getIdElement(), mergedPerson.getIdElement());
assertThat(mergedPerson, is(samePersonAs(myToPerson))); assertThat(mergedPerson, is(sameSourceResourceAs(myToPerson)));
assertEquals(2, getAllPersons().size()); assertEquals(2, getAllPersons().size());
assertEquals(1, getAllActivePersons().size()); assertEquals(1, getAllActivePersons().size());

2
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/provider/EmpiProviderQueryLinkR4Test.java
View File

@ -48,7 +48,7 @@ public class EmpiProviderQueryLinkR4Test extends BaseLinkR4Test {
myPerson2Id = new StringType(person2.getIdElement().toVersionless().getValue()); myPerson2Id = new StringType(person2.getIdElement().toVersionless().getValue());
Long person2Pid = myIdHelperService.getPidOrNull(person2); Long person2Pid = myIdHelperService.getPidOrNull(person2);
EmpiLink possibleDuplicateEmpiLink = myEmpiLinkDaoSvc.newEmpiLink().setPersonPid(person1Pid).setTargetPid(person2Pid).setMatchResult(EmpiMatchResultEnum.POSSIBLE_DUPLICATE).setLinkSource(EmpiLinkSourceEnum.AUTO); EmpiLink possibleDuplicateEmpiLink = myEmpiLinkDaoSvc.newEmpiLink().setSourceResourcePid(person1Pid).setTargetPid(person2Pid).setMatchResult(EmpiMatchResultEnum.POSSIBLE_DUPLICATE).setLinkSource(EmpiLinkSourceEnum.AUTO);
saveLink(possibleDuplicateEmpiLink); saveLink(possibleDuplicateEmpiLink);
} }

2
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/provider/EmpiProviderUpdateLinkR4Test.java
View File

@ -33,7 +33,7 @@ public class EmpiProviderUpdateLinkR4Test extends BaseLinkR4Test {
assertEquals(EmpiMatchResultEnum.NO_MATCH, links.get(0).getMatchResult()); assertEquals(EmpiMatchResultEnum.NO_MATCH, links.get(0).getMatchResult());
assertEquals(EmpiLinkSourceEnum.AUTO, links.get(1).getLinkSource()); assertEquals(EmpiLinkSourceEnum.AUTO, links.get(1).getLinkSource());
assertEquals(EmpiMatchResultEnum.MATCH, links.get(1).getMatchResult()); assertEquals(EmpiMatchResultEnum.MATCH, links.get(1).getMatchResult());
assertNotEquals(links.get(0).getPersonPid(), links.get(1).getPersonPid()); assertNotEquals(links.get(0).getSourceResourcePid(), links.get(1).getSourceResourcePid());
} }
@Test @Test

2
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/svc/EmpiLinkSvcTest.java
View File

@ -116,7 +116,7 @@ public class EmpiLinkSvcTest extends BaseEmpiR4Test {
private void saveNoMatchLink(Long thePersonPid, Long theTargetPid) { private void saveNoMatchLink(Long thePersonPid, Long theTargetPid) {
EmpiLink noMatchLink = myEmpiLinkDaoSvc.newEmpiLink() EmpiLink noMatchLink = myEmpiLinkDaoSvc.newEmpiLink()
.setPersonPid(thePersonPid) .setSourceResourcePid(thePersonPid)
.setTargetPid(theTargetPid) .setTargetPid(theTargetPid)
.setLinkSource(EmpiLinkSourceEnum.MANUAL) .setLinkSource(EmpiLinkSourceEnum.MANUAL)
.setMatchResult(EmpiMatchResultEnum.NO_MATCH); .setMatchResult(EmpiMatchResultEnum.NO_MATCH);

32
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/svc/EmpiMatchLinkSvcMultipleEidModeTest.java
View File

@ -47,7 +47,7 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
// Existing Person with system-assigned EID found linked from matched Patient. incoming Patient has EID. Replace Person system-assigned EID with Patient EID. // Existing Person with system-assigned EID found linked from matched Patient. incoming Patient has EID. Replace Person system-assigned EID with Patient EID.
Patient patient = createPatientAndUpdateLinks(buildJanePatient()); Patient patient = createPatientAndUpdateLinks(buildJanePatient());
assertLinksMatchResult(MATCH); assertLinksMatchResult(MATCH);
assertLinksNewPerson(true); assertLinksCreatedNewResource(true);
assertLinksMatchedByEid(false); assertLinksMatchedByEid(false);
Person janePerson = getPersonFromTarget(patient); Person janePerson = getPersonFromTarget(patient);
@ -59,11 +59,11 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
addExternalEID(janePatient, "67890"); addExternalEID(janePatient, "67890");
createPatientAndUpdateLinks(janePatient); createPatientAndUpdateLinks(janePatient);
assertLinksMatchResult(MATCH, MATCH); assertLinksMatchResult(MATCH, MATCH);
assertLinksNewPerson(true, false); assertLinksCreatedNewResource(true, false);
assertLinksMatchedByEid(false, false); assertLinksMatchedByEid(false, false);
//We want to make sure the patients were linked to the same person. //We want to make sure the patients were linked to the same person.
assertThat(patient, is(samePersonAs(janePatient))); assertThat(patient, is(sameSourceResourceAs(janePatient)));
Person person = getPersonFromTarget(patient); Person person = getPersonFromTarget(patient);
@ -95,7 +95,7 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
addExternalEID(patient1, "id_4"); addExternalEID(patient1, "id_4");
createPatientAndUpdateLinks(patient1); createPatientAndUpdateLinks(patient1);
assertLinksMatchResult(MATCH); assertLinksMatchResult(MATCH);
assertLinksNewPerson(true); assertLinksCreatedNewResource(true);
assertLinksMatchedByEid(false); assertLinksMatchedByEid(false);
Patient patient2 = buildPaulPatient(); Patient patient2 = buildPaulPatient();
@ -103,10 +103,10 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
addExternalEID(patient2, "id_1"); addExternalEID(patient2, "id_1");
patient2 = createPatientAndUpdateLinks(patient2); patient2 = createPatientAndUpdateLinks(patient2);
assertLinksMatchResult(MATCH, MATCH); assertLinksMatchResult(MATCH, MATCH);
assertLinksNewPerson(true, false); assertLinksCreatedNewResource(true, false);
assertLinksMatchedByEid(false, true); assertLinksMatchedByEid(false, true);
assertThat(patient1, is(samePersonAs(patient2))); assertThat(patient1, is(sameSourceResourceAs(patient2)));
clearExternalEIDs(patient2); clearExternalEIDs(patient2);
addExternalEID(patient2, "id_6"); addExternalEID(patient2, "id_6");
@ -117,10 +117,10 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
updatePatientAndUpdateLinks(patient2); updatePatientAndUpdateLinks(patient2);
assertLinksMatchResult(MATCH, MATCH); assertLinksMatchResult(MATCH, MATCH);
assertLinksNewPerson(true, false); assertLinksCreatedNewResource(true, false);
assertLinksMatchedByEid(false, true); assertLinksMatchedByEid(false, true);
assertThat(patient1, is(samePersonAs(patient2))); assertThat(patient1, is(sameSourceResourceAs(patient2)));
personFromTarget = getPersonFromTarget(patient2); personFromTarget = getPersonFromTarget(patient2);
assertThat(personFromTarget.getIdentifier(), hasSize(6)); assertThat(personFromTarget.getIdentifier(), hasSize(6));
@ -134,7 +134,7 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
addExternalEID(patient1, "eid-11"); addExternalEID(patient1, "eid-11");
patient1 = createPatientAndUpdateLinks(patient1); patient1 = createPatientAndUpdateLinks(patient1);
assertLinksMatchResult(MATCH); assertLinksMatchResult(MATCH);
assertLinksNewPerson(true); assertLinksCreatedNewResource(true);
assertLinksMatchedByEid(false); assertLinksMatchedByEid(false);
Patient patient2 = buildJanePatient(); Patient patient2 = buildJanePatient();
@ -142,7 +142,7 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
addExternalEID(patient2, "eid-22"); addExternalEID(patient2, "eid-22");
patient2 = createPatientAndUpdateLinks(patient2); patient2 = createPatientAndUpdateLinks(patient2);
assertLinksMatchResult(MATCH, MATCH, POSSIBLE_DUPLICATE); assertLinksMatchResult(MATCH, MATCH, POSSIBLE_DUPLICATE);
assertLinksNewPerson(true, true, false); assertLinksCreatedNewResource(true, true, false);
assertLinksMatchedByEid(false, false, true); assertLinksMatchedByEid(false, false, true);
List<EmpiLink> possibleDuplicates = myEmpiLinkDaoSvc.getPossibleDuplicates(); List<EmpiLink> possibleDuplicates = myEmpiLinkDaoSvc.getPossibleDuplicates();
@ -155,7 +155,7 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
//The two Persons related to the patients should both show up in the only existing POSSIBLE_DUPLICATE EmpiLink. //The two Persons related to the patients should both show up in the only existing POSSIBLE_DUPLICATE EmpiLink.
EmpiLink empiLink = possibleDuplicates.get(0); EmpiLink empiLink = possibleDuplicates.get(0);
assertThat(empiLink.getPersonPid(), is(in(duplicatePids))); assertThat(empiLink.getSourceResourcePid(), is(in(duplicatePids)));
assertThat(empiLink.getTargetPid(), is(in(duplicatePids))); assertThat(empiLink.getTargetPid(), is(in(duplicatePids)));
} }
@ -167,7 +167,7 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
addExternalEID(patient1, "eid-11"); addExternalEID(patient1, "eid-11");
patient1 = createPatientAndUpdateLinks(patient1); patient1 = createPatientAndUpdateLinks(patient1);
assertLinksMatchResult(MATCH); assertLinksMatchResult(MATCH);
assertLinksNewPerson(true); assertLinksCreatedNewResource(true);
assertLinksMatchedByEid(false); assertLinksMatchedByEid(false);
Patient patient2 = buildPaulPatient(); Patient patient2 = buildPaulPatient();
@ -175,18 +175,18 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
addExternalEID(patient2, "eid-22"); addExternalEID(patient2, "eid-22");
patient2 = createPatientAndUpdateLinks(patient2); patient2 = createPatientAndUpdateLinks(patient2);
assertLinksMatchResult(MATCH, MATCH); assertLinksMatchResult(MATCH, MATCH);
assertLinksNewPerson(true, true); assertLinksCreatedNewResource(true, true);
assertLinksMatchedByEid(false, false); assertLinksMatchedByEid(false, false);
Patient patient3 = buildPaulPatient(); Patient patient3 = buildPaulPatient();
addExternalEID(patient3, "eid-22"); addExternalEID(patient3, "eid-22");
patient3 = createPatientAndUpdateLinks(patient3); patient3 = createPatientAndUpdateLinks(patient3);
assertLinksMatchResult(MATCH, MATCH, MATCH); assertLinksMatchResult(MATCH, MATCH, MATCH);
assertLinksNewPerson(true, true, false); assertLinksCreatedNewResource(true, true, false);
assertLinksMatchedByEid(false, false, true); assertLinksMatchedByEid(false, false, true);
//Now, Patient 2 and 3 are linked, and the person has 2 eids. //Now, Patient 2 and 3 are linked, and the person has 2 eids.
assertThat(patient2, is(samePersonAs(patient3))); assertThat(patient2, is(sameSourceResourceAs(patient3)));
//Now lets change one of the EIDs on the second patient to one that matches our original patient. //Now lets change one of the EIDs on the second patient to one that matches our original patient.
//This should create a situation in which the incoming EIDs are matched to _two_ different persons. In this case, we want to //This should create a situation in which the incoming EIDs are matched to _two_ different persons. In this case, we want to
@ -197,7 +197,7 @@ public class EmpiMatchLinkSvcMultipleEidModeTest extends BaseEmpiR4Test {
patient2 = updatePatientAndUpdateLinks(patient2); patient2 = updatePatientAndUpdateLinks(patient2);
logAllLinks(); logAllLinks();
assertLinksMatchResult(MATCH, POSSIBLE_MATCH, MATCH, POSSIBLE_MATCH, POSSIBLE_DUPLICATE); assertLinksMatchResult(MATCH, POSSIBLE_MATCH, MATCH, POSSIBLE_MATCH, POSSIBLE_DUPLICATE);
assertLinksNewPerson(true, true, false, false, false); assertLinksCreatedNewResource(true, true, false, false, false);
assertLinksMatchedByEid(false, true, true, true, true); assertLinksMatchedByEid(false, true, true, true, true);
assertThat(patient2, is(not(matchedToAPerson()))); assertThat(patient2, is(not(matchedToAPerson())));

92
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/svc/EmpiMatchLinkSvcTest.java
View File

@ -41,6 +41,8 @@ import static org.hamcrest.Matchers.hasSize;
import static org.hamcrest.Matchers.in; import static org.hamcrest.Matchers.in;
import static org.hamcrest.Matchers.is; import static org.hamcrest.Matchers.is;
import static org.hamcrest.Matchers.not; import static org.hamcrest.Matchers.not;
import static org.hamcrest.Matchers.notNullValue;
import static org.hamcrest.Matchers.nullValue;
import static org.junit.jupiter.api.Assertions.assertEquals; import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.slf4j.LoggerFactory.getLogger; import static org.slf4j.LoggerFactory.getLogger;
@ -63,19 +65,21 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
createPatientAndUpdateLinks(buildJanePatient()); createPatientAndUpdateLinks(buildJanePatient());
assertLinkCount(1); assertLinkCount(1);
assertLinksMatchResult(MATCH); assertLinksMatchResult(MATCH);
assertLinksNewPerson(true); assertLinksCreatedNewResource(true);
assertLinksMatchedByEid(false); assertLinksMatchedByEid(false);
} }
@Test @Test
public void testAddPatientLinksToNewPersonIfNoMatch() { public void testAddPatientLinksToNewlyCreatedResourceIfNoMatch() {
Patient patient1 = createPatientAndUpdateLinks(buildJanePatient()); Patient patient1 = createPatientAndUpdateLinks(buildJanePatient());
Patient patient2 = createPatientAndUpdateLinks(buildPaulPatient()); Patient patient2 = createPatientAndUpdateLinks(buildPaulPatient());
assertLinkCount(2); assertLinkCount(2);
assertThat(patient1, is(not(samePersonAs(patient2))));
assertThat(patient1, is(not(sameSourceResourceAs(patient2))));
assertLinksMatchResult(MATCH, MATCH); assertLinksMatchResult(MATCH, MATCH);
assertLinksNewPerson(true, true); assertLinksCreatedNewResource(true, true);
assertLinksMatchedByEid(false, false); assertLinksMatchedByEid(false, false);
} }
@ -87,9 +91,9 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
Patient patient2 = createPatientAndUpdateLinks(buildJanePatient()); Patient patient2 = createPatientAndUpdateLinks(buildJanePatient());
assertLinkCount(2); assertLinkCount(2);
assertThat(patient1, is(samePersonAs(patient2))); assertThat(patient1, is(sameSourceResourceAs(patient2)));
assertLinksMatchResult(MATCH, MATCH); assertLinksMatchResult(MATCH, MATCH);
assertLinksNewPerson(true, false); assertLinksCreatedNewResource(true, false);
assertLinksMatchedByEid(false, false); assertLinksMatchedByEid(false, false);
} }
@ -106,11 +110,11 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
//rerun EMPI rules against unmatchedJane. //rerun EMPI rules against unmatchedJane.
myEmpiMatchLinkSvc.updateEmpiLinksForEmpiTarget(unmatchedJane, createContextForCreate()); myEmpiMatchLinkSvc.updateEmpiLinksForEmpiTarget(unmatchedJane, createContextForCreate());
assertThat(unmatchedJane, is(not(samePersonAs(janePerson)))); assertThat(unmatchedJane, is(not(sameSourceResourceAs(janePerson))));
assertThat(unmatchedJane, is(not(linkedTo(originalJane)))); assertThat(unmatchedJane, is(not(linkedTo(originalJane))));
assertLinksMatchResult(MATCH, NO_MATCH, MATCH); assertLinksMatchResult(MATCH, NO_MATCH, MATCH);
assertLinksNewPerson(true, false, true); assertLinksCreatedNewResource(true, false, true);
assertLinksMatchedByEid(false, false, false); assertLinksMatchedByEid(false, false, false);
} }
@ -130,11 +134,11 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
//should cause a whole new Person to be created. //should cause a whole new Person to be created.
myEmpiMatchLinkSvc.updateEmpiLinksForEmpiTarget(unmatchedPatient, createContextForCreate()); myEmpiMatchLinkSvc.updateEmpiLinksForEmpiTarget(unmatchedPatient, createContextForCreate());
assertThat(unmatchedPatient, is(not(samePersonAs(janePerson)))); assertThat(unmatchedPatient, is(not(sameSourceResourceAs(janePerson))));
assertThat(unmatchedPatient, is(not(linkedTo(originalJane)))); assertThat(unmatchedPatient, is(not(linkedTo(originalJane))));
assertLinksMatchResult(MATCH, NO_MATCH, MATCH); assertLinksMatchResult(MATCH, NO_MATCH, MATCH);
assertLinksNewPerson(true, false, true); assertLinksCreatedNewResource(true, false, true);
assertLinksMatchedByEid(false, false, false); assertLinksMatchedByEid(false, false, false);
} }
@ -184,7 +188,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
public void testPatientMatchingAnotherPatientLinksToSamePerson() { public void testPatientMatchingAnotherPatientLinksToSamePerson() {
Patient janePatient = createPatientAndUpdateLinks(buildJanePatient()); Patient janePatient = createPatientAndUpdateLinks(buildJanePatient());
Patient sameJanePatient = createPatientAndUpdateLinks(buildJanePatient()); Patient sameJanePatient = createPatientAndUpdateLinks(buildJanePatient());
assertThat(janePatient, is(samePersonAs(sameJanePatient))); assertThat(janePatient, is(sameSourceResourceAs(sameJanePatient)));
} }
@Test @Test
@ -200,7 +204,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
createPatientAndUpdateLinks(janePatient); createPatientAndUpdateLinks(janePatient);
//We want to make sure the patients were linked to the same person. //We want to make sure the patients were linked to the same person.
assertThat(patient, is(samePersonAs(janePatient))); assertThat(patient, is(sameSourceResourceAs(janePatient)));
Person person = getPersonFromTarget(patient); Person person = getPersonFromTarget(patient);
@ -225,7 +229,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
Patient patient2 = addExternalEID(buildPaulPatient(), "uniqueid"); Patient patient2 = addExternalEID(buildPaulPatient(), "uniqueid");
createPatientAndUpdateLinks(patient2); createPatientAndUpdateLinks(patient2);
assertThat(patient1, is(samePersonAs(patient2))); assertThat(patient1, is(sameSourceResourceAs(patient2)));
} }
@Test @Test
@ -243,7 +247,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
addExternalEID(patient2, "id_1"); addExternalEID(patient2, "id_1");
createPatientAndUpdateLinks(patient2); createPatientAndUpdateLinks(patient2);
assertThat(patient1, is(samePersonAs(patient2))); assertThat(patient1, is(sameSourceResourceAs(patient2)));
} }
@Test @Test
@ -266,7 +270,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
//The two Persons related to the patients should both show up in the only existing POSSIBLE_DUPLICATE EmpiLink. //The two Persons related to the patients should both show up in the only existing POSSIBLE_DUPLICATE EmpiLink.
EmpiLink empiLink = possibleDuplicates.get(0); EmpiLink empiLink = possibleDuplicates.get(0);
assertThat(empiLink.getPersonPid(), is(in(duplicatePids))); assertThat(empiLink.getSourceResourcePid(), is(in(duplicatePids)));
assertThat(empiLink.getTargetPid(), is(in(duplicatePids))); assertThat(empiLink.getTargetPid(), is(in(duplicatePids)));
} }
@ -285,7 +289,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
Practitioner janePractitioner = createPractitionerAndUpdateLinks(buildJanePractitioner()); Practitioner janePractitioner = createPractitionerAndUpdateLinks(buildJanePractitioner());
assertLinkCount(2); assertLinkCount(2);
assertThat(janePatient, is(not(samePersonAs(janePractitioner)))); assertThat(janePatient, is(not(sameSourceResourceAs(janePractitioner))));
} }
@Test @Test
@ -294,7 +298,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
Practitioner anotherJanePractitioner = createPractitionerAndUpdateLinks(buildJanePractitioner()); Practitioner anotherJanePractitioner = createPractitionerAndUpdateLinks(buildJanePractitioner());
assertLinkCount(2); assertLinkCount(2);
assertThat(anotherJanePractitioner, is(samePersonAs(janePractitioner))); assertThat(anotherJanePractitioner, is(sameSourceResourceAs(janePractitioner)));
} }
@Test @Test
@ -319,10 +323,10 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
Patient janePatient2 = createPatientAndUpdateLinks(buildJanePatient()); Patient janePatient2 = createPatientAndUpdateLinks(buildJanePatient());
assertLinkCount(2); assertLinkCount(2);
assertThat(janePatient, is(samePersonAs(janePatient2))); assertThat(janePatient, is(sameSourceResourceAs(janePatient2)));
Patient incomingJanePatient = createPatientAndUpdateLinks(buildJanePatient()); Patient incomingJanePatient = createPatientAndUpdateLinks(buildJanePatient());
assertThat(incomingJanePatient, is(samePersonAs(janePatient, janePatient2))); assertThat(incomingJanePatient, is(sameSourceResourceAs(janePatient, janePatient2)));
assertThat(incomingJanePatient, is(linkedTo(janePatient, janePatient2))); assertThat(incomingJanePatient, is(linkedTo(janePatient, janePatient2)));
} }
@ -340,7 +344,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
//own individual Persons for the purpose of this test. //own individual Persons for the purpose of this test.
IAnyResource person = myPersonHelper.createPersonFromEmpiTarget(janePatient2); IAnyResource person = myPersonHelper.createPersonFromEmpiTarget(janePatient2);
myEmpiLinkSvc.updateLink(person, janePatient2, EmpiMatchOutcome.NEW_PERSON_MATCH, EmpiLinkSourceEnum.AUTO, createContextForCreate()); myEmpiLinkSvc.updateLink(person, janePatient2, EmpiMatchOutcome.NEW_PERSON_MATCH, EmpiLinkSourceEnum.AUTO, createContextForCreate());
assertThat(janePatient, is(not(samePersonAs(janePatient2)))); assertThat(janePatient, is(not(sameSourceResourceAs(janePatient2))));
//In theory, this will match both Persons! //In theory, this will match both Persons!
Patient incomingJanePatient = createPatientAndUpdateLinks(buildJanePatient()); Patient incomingJanePatient = createPatientAndUpdateLinks(buildJanePatient());
@ -357,7 +361,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
logAllLinks(); logAllLinks();
assertLinksMatchResult(MATCH, MATCH, POSSIBLE_MATCH, POSSIBLE_MATCH, POSSIBLE_DUPLICATE); assertLinksMatchResult(MATCH, MATCH, POSSIBLE_MATCH, POSSIBLE_MATCH, POSSIBLE_DUPLICATE);
assertLinksNewPerson(true, true, false, false, false); assertLinksCreatedNewResource(true, true, false, false, false);
assertLinksMatchedByEid(false, false, false, false, false); assertLinksMatchedByEid(false, false, false, false, false);
} }
@ -370,7 +374,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
Patient patient = buildJanePatient(); Patient patient = buildJanePatient();
patient.getNameFirstRep().setFamily("familyone"); patient.getNameFirstRep().setFamily("familyone");
patient = createPatientAndUpdateLinks(patient); patient = createPatientAndUpdateLinks(patient);
assertThat(patient, is(samePersonAs(patient))); assertThat(patient, is(sameSourceResourceAs(patient)));
Patient patient2 = buildJanePatient(); Patient patient2 = buildJanePatient();
patient2.getNameFirstRep().setFamily("pleasedonotmatchatall"); patient2.getNameFirstRep().setFamily("pleasedonotmatchatall");
@ -393,7 +397,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
assertEquals(Person.IdentityAssuranceLevel.LEVEL1, person.getLink().get(2).getAssurance()); assertEquals(Person.IdentityAssuranceLevel.LEVEL1, person.getLink().get(2).getAssurance());
assertLinksMatchResult(MATCH, POSSIBLE_MATCH, POSSIBLE_MATCH); assertLinksMatchResult(MATCH, POSSIBLE_MATCH, POSSIBLE_MATCH);
assertLinksNewPerson(true, false, false); assertLinksCreatedNewResource(true, false, false);
assertLinksMatchedByEid(false, false, false); assertLinksMatchedByEid(false, false, false);
} }
@ -402,7 +406,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
Patient patient = buildJanePatient(); Patient patient = buildJanePatient();
patient.getNameFirstRep().setFamily("familyone"); patient.getNameFirstRep().setFamily("familyone");
patient = createPatientAndUpdateLinks(patient); patient = createPatientAndUpdateLinks(patient);
assertThat(patient, is(samePersonAs(patient))); assertThat(patient, is(sameSourceResourceAs(patient)));
Patient patient2 = buildJanePatient(); Patient patient2 = buildJanePatient();
patient2.getNameFirstRep().setFamily("pleasedonotmatchatall"); patient2.getNameFirstRep().setFamily("pleasedonotmatchatall");
@ -412,9 +416,9 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
patient3.getNameFirstRep().setFamily("familyone"); patient3.getNameFirstRep().setFamily("familyone");
patient3 = createPatientAndUpdateLinks(patient3); patient3 = createPatientAndUpdateLinks(patient3);
assertThat(patient2, is(not(samePersonAs(patient)))); assertThat(patient2, is(not(sameSourceResourceAs(patient))));
assertThat(patient2, is(possibleMatchWith(patient))); assertThat(patient2, is(possibleMatchWith(patient)));
assertThat(patient3, is(samePersonAs(patient))); assertThat(patient3, is(sameSourceResourceAs(patient)));
} }
@Test @Test
@ -451,7 +455,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
patient1.setId(janePatient.getId()); patient1.setId(janePatient.getId());
Patient janePaulPatient = updatePatientAndUpdateLinks(patient1); Patient janePaulPatient = updatePatientAndUpdateLinks(patient1);
assertThat(janePerson, is(samePersonAs(janePaulPatient))); assertThat(janePerson, is(sameSourceResourceAs(janePaulPatient)));
//Ensure the related person was updated with new info. //Ensure the related person was updated with new info.
Person personFromTarget = getPersonFromTarget(janePaulPatient); Person personFromTarget = getPersonFromTarget(janePaulPatient);
@ -472,7 +476,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
paul2.setGender(Enumerations.AdministrativeGender.FEMALE); paul2.setGender(Enumerations.AdministrativeGender.FEMALE);
paul2 = createPatientAndUpdateLinks(paul2); paul2 = createPatientAndUpdateLinks(paul2);
assertThat(paul2, is(samePersonAs(paul))); assertThat(paul2, is(sameSourceResourceAs(paul)));
//Newly matched patients aren't allowed to overwrite Person Attributes unless they are empty, so gender should still be set to male. //Newly matched patients aren't allowed to overwrite Person Attributes unless they are empty, so gender should still be set to male.
Person paul2Person = getPersonFromTarget(paul2); Person paul2Person = getPersonFromTarget(paul2);
@ -517,7 +521,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
updatePatientAndUpdateLinks(paul); updatePatientAndUpdateLinks(paul);
assertThat(originalJanePerson, is(possibleDuplicateOf(originalPaulPerson))); assertThat(originalJanePerson, is(possibleDuplicateOf(originalPaulPerson)));
assertThat(jane, is(samePersonAs(paul))); assertThat(jane, is(sameSourceResourceAs(paul)));
} }
@Test @Test
@ -539,7 +543,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
assertNoDuplicates(); assertNoDuplicates();
Person newlyFoundPaulPerson = getPersonFromTarget(paul); Person newlyFoundPaulPerson = getPersonFromTarget(paul);
assertThat(originalPaulPerson, is(samePersonAs(newlyFoundPaulPerson))); assertThat(originalPaulPerson, is(sameSourceResourceAs(newlyFoundPaulPerson)));
String newEid = myEidHelper.getExternalEid(newlyFoundPaulPerson).get(0).getValue(); String newEid = myEidHelper.getExternalEid(newlyFoundPaulPerson).get(0).getValue();
assertThat(newEid, is(equalTo(EID_2))); assertThat(newEid, is(equalTo(EID_2)));
} }
@ -565,7 +569,7 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
patient3 = createPatientAndUpdateLinks(patient3); patient3 = createPatientAndUpdateLinks(patient3);
//Now, Patient 2 and 3 are linked, and the person has 2 eids. //Now, Patient 2 and 3 are linked, and the person has 2 eids.
assertThat(patient2, is(samePersonAs(patient3))); assertThat(patient2, is(sameSourceResourceAs(patient3)));
assertNoDuplicates(); assertNoDuplicates();
// Person A -> {P1} // Person A -> {P1}
// Person B -> {P2, P3} // Person B -> {P2, P3}
@ -578,11 +582,35 @@ public class EmpiMatchLinkSvcTest extends BaseEmpiR4Test {
// Person B -> {P3} // Person B -> {P3}
// Possible duplicates A<->B // Possible duplicates A<->B
assertThat(patient2, is(samePersonAs(patient1))); assertThat(patient2, is(sameSourceResourceAs(patient1)));
List<EmpiLink> possibleDuplicates = myEmpiLinkDaoSvc.getPossibleDuplicates(); List<EmpiLink> possibleDuplicates = myEmpiLinkDaoSvc.getPossibleDuplicates();
assertThat(possibleDuplicates, hasSize(1)); assertThat(possibleDuplicates, hasSize(1));
assertThat(patient3, is(possibleDuplicateOf(patient1))); assertThat(patient3, is(possibleDuplicateOf(patient1)));
} }
@Test
public void testPatientUpdatesCauseCandidateSearchToContainExistingLinksAndNewFinds() {
Date today = new Date();
Patient jane = buildJaneWithBirthday(today);
jane.setActive(true);
Patient janePatient = createPatientAndUpdateLinks(jane);
Person janePerson = getPersonFromTarget(janePatient);
Patient paul = buildPaulPatient();
paul.setActive(true);
Patient paulPatient = createPatientAndUpdateLinks(paul);
Person paulPerson = getPersonFromTarget(paulPatient);
paulPatient.setBirthDate(jane.getBirthDate());
paulPatient.setName(jane.getName());
myEmpiMatchLinkSvc.updateEmpiLinksForEmpiTarget(paulPatient, createContextForUpdate());
assertThat(paulPerson.getBirthDate(), is(nullValue()));
paulPerson = getPersonFromTarget(paulPatient);
assertThat(paulPerson.getBirthDate(), is(notNullValue()));
}
} }

4
hapi-fhir-jpaserver-empi/src/test/java/ca/uhn/fhir/jpa/empi/svc/EmpiPersonMergerSvcTest.java
View File

@ -97,7 +97,7 @@ public class EmpiPersonMergerSvcTest extends BaseEmpiR4Test {
Person mergedPerson = mergePersons(); Person mergedPerson = mergePersons();
assertEquals(myToPerson.getIdElement(), mergedPerson.getIdElement()); assertEquals(myToPerson.getIdElement(), mergedPerson.getIdElement());
assertThat(mergedPerson, is(samePersonAs(mergedPerson))); assertThat(mergedPerson, is(sameSourceResourceAs(mergedPerson)));
assertEquals(2, getAllPersons().size()); assertEquals(2, getAllPersons().size());
assertEquals(1, getAllActivePersons().size()); assertEquals(1, getAllActivePersons().size());
} }
@ -121,7 +121,7 @@ public class EmpiPersonMergerSvcTest extends BaseEmpiR4Test {
@Test @Test
public void mergeRemovesPossibleDuplicatesLink() { public void mergeRemovesPossibleDuplicatesLink() {
EmpiLink empiLink = myEmpiLinkDaoSvc.newEmpiLink().setPersonPid(myToPersonPid).setTargetPid(myFromPersonPid).setMatchResult(EmpiMatchResultEnum.POSSIBLE_DUPLICATE).setLinkSource(EmpiLinkSourceEnum.AUTO); EmpiLink empiLink = myEmpiLinkDaoSvc.newEmpiLink().setSourceResourcePid(myToPersonPid).setTargetPid(myFromPersonPid).setMatchResult(EmpiMatchResultEnum.POSSIBLE_DUPLICATE).setLinkSource(EmpiLinkSourceEnum.AUTO);
saveLink(empiLink); saveLink(empiLink);
{ {