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Mergeback 2022 07 08 (#3771)
* fix handling of common search parameters * Revert "fix handling of common search parameters" This reverts commit 89c45eebdc31c3dd9533570d9c709ecc7ed5a7a6. * Fix implementation, add test (#3378) * Fix implementation, add test * Tighten test * Rip out dead modules * Add changelog * Jr 20220210 handle common search params in contained searches (#3377) * fix handling of common search parameters * add support for reference search parameters with multiple paths * Issue 3357 * Version bump * Fixed null pointer exception for re-loading subscription on cdr restart and when there's no partition id in the request, and added tests * added changelogs for this fix * Fix broken changelog file * Can't specify specific resource type permissions for bulk export (#3376) * deny user from exporting without perms * add unit tests * add changelog Co-authored-by: olivia-you <olivia.you@smilecdr.com> * Make migration donothing as it was added in error * Remove ehcache * Add version.yaml: * Add to sources/javadocs for dist * Fix typo * fix up pom * wip test removing checkstyle plugin from deployable pom * remove test pom changes, instead just dont deploy to sonatype * typo * Version bump * Add implementation, testing, and changelog * Add backport info, make aware of 6_0_0 * add jira ref * Fix test * Add versionenum * Bump dep for spring, add changelog, add versionenum, add changelog folder * Actually do the version bump * 3654 postgres lobs (#3656) * Implementation, test, changelog * Modify changelog * Fix changelog * Add upgrade.md file * Modify to yaml changes * Update hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/5_7_3/3654-lob-problems.yaml Co-authored-by: Ken Stevens <khstevens@gmail.com> * tidy * more work Co-authored-by: Ken Stevens <khstevens@gmail.com> * Fix bad yaml indent * Version bump * Back out the reindex changes introduced in 5.7.3 * update changelog * version bump * added fix for subscription in default partition when default partition's id is null * added changelog * Add version info and changelog folder * adding release pipeline yml file fo azure * Fix parameter count limitation on MSSQL/Oracle large transactions (#3075) * Fix parameter count limitation on MSSQL/Oracle large transactions * Changelog fix * Move changelog * Force a change to trigger CI * Test refactoring * Backport oracle fix * Fix backport * upping version to 5.7.5 for release * add versionenum * Updating version to: 5.7.6 post release. * Add query-chunk-aware code * Add new folder * Fix up versionenum * Remove imports Co-authored-by: Jason Roberts <jason.roberts@smilecdr.com> Co-authored-by: JasonRoberts-smile <85363818+JasonRoberts-smile@users.noreply.github.com> Co-authored-by: Mark Iantorno <markiantorno@gmail.com> Co-authored-by: Steven Li <steven@smilecdr.com> Co-authored-by: Olivia You <46392181+oliviayou@users.noreply.github.com> Co-authored-by: olivia-you <olivia.you@smilecdr.com> Co-authored-by: Ken Stevens <khstevens@gmail.com> Co-authored-by: Long Ma <long@smilecdr.com> Co-authored-by: James Agnew <jamesagnew@gmail.com>
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@ -89,10 +89,14 @@ public enum VersionEnum {
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V5_7_0,
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V5_7_1,
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V5_7_2,
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V5_7_3,
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V5_7_4,
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V5_7_5,
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V5_7_6,
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V6_0_0,
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V6_0_1,
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V6_0_2,
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V6_1_0
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V6_1_0,
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;
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public static VersionEnum latestVersion() {
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@ -0,0 +1,5 @@
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---
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type: fix
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issue: 3654
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title: "UPDATE: This change has breen removed. Previous content was: 'Modify reindexing to migrate data HFJ_RES_VER data from the RES_TEXT column to the RES_TEXT_VC
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if the resource's size falls inside of the configuration defined in DaoConfig's `getInlineResourceTextBelowSize` property.'"
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@ -0,0 +1,11 @@
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---
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- item:
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type: "fix"
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title: "This version specifically modifies reindex to support moving data from the RES_TEXT to the RES_TEXT_VC column in the HFJ_RES_VER table. This is especially important
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for PostgreSQL users, as the RES_TEXT column only has an addressable space of about 4 billion resources.
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Any installation that exceeds this amount of resources stored in the RES_TEXT will experience that the software hangs on attempting to store new resources.
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In order to avoid this, you should use the `DaoConfig#setInlineResourceTextBelowSize` setting, and set it to a large non-zero value.
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This will cause PostgreSQL to not store the resource text as a LOB, but instead as a VARCHAR field. By default, this field has length 4000, but you can and should update it by following the documentation [here](https://smilecdr.com/docs/fhir_storage_relational/fhir_storage_relational_module.html#resource-body-storage).
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"
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@ -0,0 +1,3 @@
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---
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release-date: "2022-05-30"
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codename: "Sojourner"
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@ -0,0 +1,3 @@
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---
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release-date: "2022-06-03"
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codename: "Sojourner"
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@ -0,0 +1,3 @@
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---
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release-date: "2022-07-07"
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codename: "Sojourner"
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@ -0,0 +1,3 @@
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---
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release-date: "2022-07-07"
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codename: "Sojourner"
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@ -0,0 +1,3 @@
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---
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release-date: "FILL ME"
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codename: "Sojourner"
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@ -1,5 +1,6 @@
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---
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type: fix
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issue: 3065
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backport: 5.7.5
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title: "A regression in HAPI FHIR 5.5.0 meant that very large transactions where the bundle contained over 1000 distinct client-assigned
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resource IDs could fail on MSSQL and Oracle due to SQL parameter count limitations."
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@ -1,6 +1,7 @@
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---
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type: fix
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issue: 2669
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backport: 5.7.4
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title: "Previously subscriptions in a partition with the id null will be matched against incoming resources from all partitions.
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Changed to subscriptions will only match against incoming resources in the partition the subscription exists in unless
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cross partition subscription is enabled and the subscription has the appropriate extension."
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@ -1435,12 +1435,13 @@ public abstract class BaseHapiFhirResourceDao<T extends IBaseResource> extends B
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}
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TransactionDetails transactionDetails = new TransactionDetails(theEntity.getUpdatedDate());
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updateEntity(null, theResource, theEntity, theEntity.getDeleted(), true, false, transactionDetails, true, false);
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ResourceTable resourceTable = updateEntity(null, theResource, theEntity, theEntity.getDeleted(), true, false, transactionDetails, true, false);
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if (theResource != null) {
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CURRENTLY_REINDEXING.put(theResource, null);
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}
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}
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@Transactional
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@Override
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public void removeTag(IIdType theId, TagTypeEnum theTagType, String theScheme, String theTerm) {
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@ -6,6 +6,7 @@ import ca.uhn.fhir.jpa.subscription.BaseSubscriptionsR5Test;
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import ca.uhn.fhir.rest.api.CacheControlDirective;
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import ca.uhn.fhir.rest.api.Constants;
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import ca.uhn.fhir.rest.api.MethodOutcome;
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import ca.uhn.fhir.rest.server.exceptions.ResourceNotFoundException;
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import ca.uhn.fhir.rest.server.exceptions.UnprocessableEntityException;
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import ca.uhn.fhir.util.HapiExtensions;
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import org.hl7.fhir.instance.model.api.IBaseBundle;
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@ -18,6 +19,7 @@ import org.springframework.beans.factory.annotation.Autowired;
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import java.util.concurrent.CountDownLatch;
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import java.util.concurrent.TimeUnit;
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import java.util.stream.Collectors;
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import static org.hamcrest.MatcherAssert.assertThat;
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import static org.hamcrest.Matchers.containsString;
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