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everything operation with type param (#3842) 

* wip+test

* wip, rough implementation

* clean up

* clean up

* clean up unused methods

* Completing implementation.

* Removing TODO.

* Replacing toList() with Collectors.toList()

* support other fhir versions and everything instance

* tests wip

* tests for instance

* Adding default methods in interface

* add testsss

* Removing @Deprecated.

* fix spacing

* changelog

* reword changelog

* Removing default methods from interface.

* Bumping version to 6.1.0-PRE28-SNAPSHOT

* Adding parameter to method call following interface modification.

* Fixing documentation and parameter order for consistency.

* Bumping version to PRE30.

* Providing backward compatibility.

* fix pom

* licences

* Fixing pom dependencies.

* Fixing more pom dependencies.

* Fixing dependencies for test-utilities.

Co-authored-by: Justin_Dar <justin.dar@smilecdr.com>
Co-authored-by: peartree <etienne.poirier@smilecdr.com>
Co-authored-by: Ken Stevens <ken@smilecdr.com>
This commit is contained in:
jdar8 2022-08-02 20:51:37 -07:00 committed by GitHub
parent e2bed96d74
commit 5f1c50a6b8
No known key found for this signature in database
GPG Key ID: 4AEE18F83AFDEB23
109 changed files with 1150 additions and 167 deletions
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2
hapi-deployable-pom/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-android/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-base/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

20
hapi-fhir-base/src/main/java/ca/uhn/fhir/tls/StoreInfo.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.tls;
/*-
* #%L
* HAPI FHIR - Core Library
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.i18n.Msg;
import org.apache.commons.io.FilenameUtils;

2
hapi-fhir-batch/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

4
hapi-fhir-bom/pom.xml
View File

@ -3,14 +3,14 @@
<modelVersion>4.0.0</modelVersion>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-bom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<packaging>pom</packaging>
<name>HAPI FHIR BOM</name>
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-checkstyle/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/hapi-fhir-cli-api/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/hapi-fhir-cli-app/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-cli</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-cli/hapi-fhir-cli-jpaserver/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../../hapi-deployable-pom</relativePath>
</parent>

2
hapi-fhir-cli/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-client-okhttp/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-client/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

20
hapi-fhir-client/src/main/java/ca/uhn/fhir/rest/client/tls/TlsAuthenticationSvc.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.rest.client.tls;
/*-
* #%L
* HAPI FHIR - Client Framework
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.tls.KeyStoreInfo;
import ca.uhn.fhir.tls.PathType;

2
hapi-fhir-converter/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-dist/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-docs/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

5
hapi-fhir-docs/src/main/resources/ca/uhn/hapi/fhir/changelog/6_1_0/3841-support-type-param-for-everything-operation.yaml Normal file
View File

@ -0,0 +1,5 @@
---
type: add
issue: 3841
jira: SMILE-3686
title: "Added support for the `_type` parameter has been added when using the `$everything` operation."

2
hapi-fhir-jacoco/pom.xml
View File

@ -11,7 +11,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jaxrsserver-base/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpa/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>

2
hapi-fhir-jpaserver-base/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

15
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/FhirResourceDaoPatientDstu2.java
View File

@ -43,7 +43,7 @@ import org.springframework.beans.factory.annotation.Autowired;
import javax.servlet.http.HttpServletRequest;
import java.util.Collections;
public class FhirResourceDaoPatientDstu2 extends BaseHapiFhirResourceDao<Patient>implements IFhirResourceDaoPatient<Patient> {
public class FhirResourceDaoPatientDstu2 extends BaseHapiFhirResourceDao<Patient> implements IFhirResourceDaoPatient<Patient> {
@Autowired
private IRequestPartitionHelperSvc myPartitionHelperSvc;
@ -52,7 +52,7 @@ public class FhirResourceDaoPatientDstu2 extends BaseHapiFhirResourceDao<Patient
super();
}
private IBundleProvider doEverythingOperation(TokenOrListParam theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequest) {
private IBundleProvider doEverythingOperation(TokenOrListParam theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequest) {
SearchParameterMap paramMap = new SearchParameterMap();
if (theCount != null) {
paramMap.setCount(theCount.getValue());
@ -66,6 +66,9 @@ public class FhirResourceDaoPatientDstu2 extends BaseHapiFhirResourceDao<Patient
if (theNarrative != null) {
paramMap.add(Constants.PARAM_TEXT, theNarrative);
}
if (theTypes != null) {
paramMap.add(Constants.PARAM_TYPE, theTypes);
}
paramMap.setIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
paramMap.setEverythingMode(theId != null ? EverythingModeEnum.PATIENT_INSTANCE : EverythingModeEnum.PATIENT_TYPE);
paramMap.setSort(theSort);
@ -83,21 +86,21 @@ public class FhirResourceDaoPatientDstu2 extends BaseHapiFhirResourceDao<Patient
}
@Override
public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails) {
public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails) {
// Notify interceptors
ActionRequestDetails requestDetails = new ActionRequestDetails(theRequestDetails, getResourceName(), null);
notifyInterceptors(RestOperationTypeEnum.EXTENDED_OPERATION_INSTANCE, requestDetails);
TokenOrListParam id = new TokenOrListParam().add(new TokenParam(theId.getIdPart()));
return doEverythingOperation(id, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theRequestDetails);
return doEverythingOperation(id, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theTypes, theRequestDetails);
}
@Override
public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails, TokenOrListParam theIds) {
public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails, TokenOrListParam theIds) {
// Notify interceptors
ActionRequestDetails requestDetails = new ActionRequestDetails(theRequestDetails, getResourceName(), null);
notifyInterceptors(RestOperationTypeEnum.EXTENDED_OPERATION_TYPE, requestDetails);
return doEverythingOperation(theIds, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theRequestDetails);
return doEverythingOperation(theIds, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theTypes, theRequestDetails);
}
}

13
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoPatientDstu3.java
View File

@ -48,7 +48,7 @@ public class FhirResourceDaoPatientDstu3 extends BaseHapiFhirResourceDao<Patient
@Autowired
private IRequestPartitionHelperSvc myPartitionHelperSvc;
private IBundleProvider doEverythingOperation(TokenOrListParam theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequest) {
private IBundleProvider doEverythingOperation(TokenOrListParam theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequest) {
SearchParameterMap paramMap = new SearchParameterMap();
if (theCount != null) {
paramMap.setCount(theCount.getValue());
@ -62,6 +62,9 @@ public class FhirResourceDaoPatientDstu3 extends BaseHapiFhirResourceDao<Patient
if (theNarrative != null) {
paramMap.add(Constants.PARAM_TEXT, theNarrative);
}
if (theTypes != null) {
paramMap.add(Constants.PARAM_TYPE, theTypes);
}
paramMap.setIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
paramMap.setEverythingMode(theId != null ? EverythingModeEnum.PATIENT_INSTANCE : EverythingModeEnum.PATIENT_TYPE);
paramMap.setSort(theSort);
@ -85,13 +88,13 @@ public class FhirResourceDaoPatientDstu3 extends BaseHapiFhirResourceDao<Patient
}
@Override
public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails) {
public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails) {
TokenOrListParam id = new TokenOrListParam().addOr(new TokenParam(theId.getIdPart()));
return doEverythingOperation(id, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theRequestDetails);
return doEverythingOperation(id, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theTypes, theRequestDetails);
}
@Override
public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails, TokenOrListParam theId) {
return doEverythingOperation(theId, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theRequestDetails);
public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails, TokenOrListParam theId) {
return doEverythingOperation(theId, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theTypes, theRequestDetails);
}
}

18
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoPatientR4.java
View File

@ -43,7 +43,7 @@ import javax.servlet.http.HttpServletRequest;
import java.util.Arrays;
import java.util.Collections;
public class FhirResourceDaoPatientR4 extends BaseHapiFhirResourceDao<Patient>implements IFhirResourceDaoPatient<Patient> {
public class FhirResourceDaoPatientR4 extends BaseHapiFhirResourceDao<Patient> implements IFhirResourceDaoPatient<Patient> {
@Autowired
private IRequestPartitionHelperSvc myPartitionHelperSvc;
@ -56,6 +56,7 @@ public class FhirResourceDaoPatientR4 extends BaseHapiFhirResourceDao<Patient>im
StringAndListParam theContent,
StringAndListParam theNarrative,
StringAndListParam theFilter,
StringAndListParam theTypes,
RequestDetails theRequest) {
SearchParameterMap paramMap = new SearchParameterMap();
if (theCount != null) {
@ -70,7 +71,12 @@ public class FhirResourceDaoPatientR4 extends BaseHapiFhirResourceDao<Patient>im
if (theNarrative != null) {
paramMap.add(Constants.PARAM_TEXT, theNarrative);
}
paramMap.setIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
if (theTypes != null) {
paramMap.add(Constants.PARAM_TYPE, theTypes);
} else {
paramMap.setIncludes(Collections.singleton(IResource.INCLUDE_ALL.asRecursive()));
}
paramMap.setEverythingMode(theIds != null && theIds.getValuesAsQueryTokens().size() == 1 ? EverythingModeEnum.PATIENT_INSTANCE : EverythingModeEnum.PATIENT_TYPE);
paramMap.setSort(theSort);
paramMap.setLastUpdated(theLastUpdated);
@ -98,14 +104,14 @@ public class FhirResourceDaoPatientR4 extends BaseHapiFhirResourceDao<Patient>im
}
@Override
public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails) {
public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails) {
TokenOrListParam id = new TokenOrListParam().add(new TokenParam(theId.getIdPart()));
return doEverythingOperation(id, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theRequestDetails);
return doEverythingOperation(id, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theTypes, theRequestDetails);
}
@Override
public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails, TokenOrListParam theId) {
return doEverythingOperation(theId, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theRequestDetails);
public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails, TokenOrListParam theId) {
return doEverythingOperation(theId, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theFilter, theTypes, theRequestDetails);
}
}

13
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/dao/r5/FhirResourceDaoPatientR5.java
View File

@ -48,7 +48,7 @@ public class FhirResourceDaoPatientR5 extends BaseHapiFhirResourceDao<Patient> i
@Autowired
private IRequestPartitionHelperSvc myPartitionHelperSvc;
private IBundleProvider doEverythingOperation(TokenOrListParam theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, RequestDetails theRequest) {
private IBundleProvider doEverythingOperation(TokenOrListParam theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theTypes, RequestDetails theRequest) {
SearchParameterMap paramMap = new SearchParameterMap();
if (theCount != null) {
paramMap.setCount(theCount.getValue());
@ -62,6 +62,9 @@ public class FhirResourceDaoPatientR5 extends BaseHapiFhirResourceDao<Patient> i
if (theNarrative != null) {
paramMap.add(Constants.PARAM_TEXT, theNarrative);
}
if (theTypes != null) {
paramMap.add(Constants.PARAM_TYPE, theTypes);
}
paramMap.setIncludes(Collections.singleton(IBaseResource.INCLUDE_ALL.asRecursive()));
paramMap.setEverythingMode(theId != null ? EverythingModeEnum.PATIENT_INSTANCE : EverythingModeEnum.PATIENT_TYPE);
paramMap.setSort(theSort);
@ -85,13 +88,13 @@ public class FhirResourceDaoPatientR5 extends BaseHapiFhirResourceDao<Patient> i
}
@Override
public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails) {
public IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails) {
TokenOrListParam id = new TokenOrListParam().add(new TokenParam(theId.getIdPart()));
return doEverythingOperation(id, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theRequestDetails);
return doEverythingOperation(id, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theTypes, theRequestDetails);
}
@Override
public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails, TokenOrListParam theId) {
return doEverythingOperation(theId, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theRequestDetails);
public IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails, TokenOrListParam theId) {
return doEverythingOperation(theId, theCount, theOffset, theLastUpdated, theSort, theContent, theNarrative, theTypes, theRequestDetails);
}
}

13
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/BaseJpaResourceProviderPatientDstu2.java
View File

@ -22,6 +22,7 @@ import ca.uhn.fhir.rest.param.StringParam;
import ca.uhn.fhir.rest.param.TokenOrListParam;
import ca.uhn.fhir.rest.param.TokenParam;
import org.hl7.fhir.r4.model.IdType;
import org.hl7.fhir.r4.model.StringType;
import java.util.Arrays;
import java.util.List;
@ -85,6 +86,10 @@ public class BaseJpaResourceProviderPatientDstu2 extends JpaResourceProviderDstu
@OperationParam(name = Constants.PARAM_FILTER, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringDt> theFilter,
@Description(shortDefinition = "Filter the resources to return only resources matching the given _type filter (note that this filter is applied only to results which link to the given patient, not to the patient itself or to supporting resources linked to by the matched resources)")
@OperationParam(name = Constants.PARAM_TYPE, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringDt> theTypes,
@Sort
SortSpec theSortSpec,
@ -93,7 +98,7 @@ public class BaseJpaResourceProviderPatientDstu2 extends JpaResourceProviderDstu
startRequest(theServletRequest);
try {
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theOffset,theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), theRequestDetails);
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theOffset,theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), toStringAndList(theTypes), theRequestDetails);
} finally {
endRequest(theServletRequest);
}
@ -131,6 +136,10 @@ public class BaseJpaResourceProviderPatientDstu2 extends JpaResourceProviderDstu
@OperationParam(name = Constants.PARAM_FILTER, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringDt> theFilter,
@Description(shortDefinition = "Filter the resources to return only resources matching the given _type filter (note that this filter is applied only to results which link to the given patient, not to the patient itself or to supporting resources linked to by the matched resources)")
@OperationParam(name = Constants.PARAM_TYPE, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringDt> theTypes,
@Description(shortDefinition = "Filter the resources to return based on the patient ids provided.")
@OperationParam(name = Constants.PARAM_ID, min = 0, max = OperationParam.MAX_UNLIMITED)
List<IdDt> theId,
@ -143,7 +152,7 @@ public class BaseJpaResourceProviderPatientDstu2 extends JpaResourceProviderDstu
startRequest(theServletRequest);
try {
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), theRequestDetails, toFlattenedPatientIdTokenParamList(theId));
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), toStringAndList(theTypes), theRequestDetails, toFlattenedPatientIdTokenParamList(theId));
} finally {
endRequest(theServletRequest);
}

12
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/dstu3/BaseJpaResourceProviderPatientDstu3.java
View File

@ -85,6 +85,10 @@ public class BaseJpaResourceProviderPatientDstu3 extends JpaResourceProviderDstu
@OperationParam(name = Constants.PARAM_FILTER, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theFilter,
@Description(shortDefinition = "Filter the resources to return only resources matching the given _type filter (note that this filter is applied only to results which link to the given patient, not to the patient itself or to supporting resources linked to by the matched resources)")
@OperationParam(name = Constants.PARAM_TYPE, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theTypes,
@Sort
SortSpec theSortSpec,
@ -93,7 +97,7 @@ public class BaseJpaResourceProviderPatientDstu3 extends JpaResourceProviderDstu
startRequest(theServletRequest);
try {
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), theRequestDetails);
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), toStringAndList(theTypes), theRequestDetails);
} finally {
endRequest(theServletRequest);
}
@ -131,6 +135,10 @@ public class BaseJpaResourceProviderPatientDstu3 extends JpaResourceProviderDstu
@OperationParam(name = Constants.PARAM_FILTER, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theFilter,
@Description(shortDefinition = "Filter the resources to return only resources matching the given _type filter (note that this filter is applied only to results which link to the given patient, not to the patient itself or to supporting resources linked to by the matched resources)")
@OperationParam(name = Constants.PARAM_TYPE, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theTypes,
@Description(shortDefinition = "Filter the resources to return based on the patient ids provided.")
@OperationParam(name = Constants.PARAM_ID, min = 0, max = OperationParam.MAX_UNLIMITED)
List<IdType> theId,
@ -142,7 +150,7 @@ public class BaseJpaResourceProviderPatientDstu3 extends JpaResourceProviderDstu
) {
startRequest(theServletRequest);
try {
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), theRequestDetails, toFlattenedPatientIdTokenParamList(theId));
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), toStringAndList(theTypes), theRequestDetails, toFlattenedPatientIdTokenParamList(theId));
} finally {
endRequest(theServletRequest);
}

12
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/r4/BaseJpaResourceProviderPatientR4.java
View File

@ -98,6 +98,10 @@ public class BaseJpaResourceProviderPatientR4 extends JpaResourceProviderR4<Pati
@OperationParam(name = Constants.PARAM_FILTER, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theFilter,
@Description(shortDefinition = "Filter the resources to return only resources matching the given _type filter (note that this filter is applied only to results which link to the given patient, not to the patient itself or to supporting resources linked to by the matched resources)")
@OperationParam(name = Constants.PARAM_TYPE, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theTypes,
@Sort
SortSpec theSortSpec,
@ -106,7 +110,7 @@ public class BaseJpaResourceProviderPatientR4 extends JpaResourceProviderR4<Pati
startRequest(theServletRequest);
try {
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), theRequestDetails);
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), toStringAndList(theTypes), theRequestDetails);
} finally {
endRequest(theServletRequest);
}
@ -144,6 +148,10 @@ public class BaseJpaResourceProviderPatientR4 extends JpaResourceProviderR4<Pati
@OperationParam(name = Constants.PARAM_FILTER, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theFilter,
@Description(shortDefinition = "Filter the resources to return only resources matching the given _type filter (note that this filter is applied only to results which link to the given patient, not to the patient itself or to supporting resources linked to by the matched resources)")
@OperationParam(name = Constants.PARAM_TYPE, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theTypes,
@Description(shortDefinition = "Filter the resources to return based on the patient ids provided.")
@OperationParam(name = Constants.PARAM_ID, min = 0, max = OperationParam.MAX_UNLIMITED)
List<IdType> theId,
@ -156,7 +164,7 @@ public class BaseJpaResourceProviderPatientR4 extends JpaResourceProviderR4<Pati
startRequest(theServletRequest);
try {
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), theRequestDetails, toFlattenedPatientIdTokenParamList(theId));
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), toStringAndList(theTypes), theRequestDetails, toFlattenedPatientIdTokenParamList(theId));
} finally {
endRequest(theServletRequest);
}

13
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/provider/r5/BaseJpaResourceProviderPatientR5.java
View File

@ -85,6 +85,10 @@ public class BaseJpaResourceProviderPatientR5 extends JpaResourceProviderR5<Pati
@OperationParam(name = Constants.PARAM_FILTER, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theFilter,
@Description(shortDefinition = "Filter the resources to return only resources matching the given _type filter (note that this filter is applied only to results which link to the given patient, not to the patient itself or to supporting resources linked to by the matched resources)")
@OperationParam(name = Constants.PARAM_TYPE, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theTypes,
@Sort
SortSpec theSortSpec,
@ -93,7 +97,7 @@ public class BaseJpaResourceProviderPatientR5 extends JpaResourceProviderR5<Pati
startRequest(theServletRequest);
try {
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), theRequestDetails);
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientInstanceEverything(theServletRequest, theId, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), toStringAndList(theTypes), theRequestDetails);
} finally {
endRequest(theServletRequest);
}
@ -131,6 +135,11 @@ public class BaseJpaResourceProviderPatientR5 extends JpaResourceProviderR5<Pati
@OperationParam(name = Constants.PARAM_FILTER, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theFilter,
@Description(shortDefinition = "Filter the resources to return only resources matching the given _type filter (note that this filter is applied only to results which link to the given patient, not to the patient itself or to supporting resources linked to by the matched resources)")
@OperationParam(name = Constants.PARAM_TYPE, min = 0, max = OperationParam.MAX_UNLIMITED)
List<StringType> theTypes,
@Description(shortDefinition = "Filter the resources to return based on the patient ids provided.")
@OperationParam(name = Constants.PARAM_ID, min = 0, max = OperationParam.MAX_UNLIMITED)
List<IdType> theId,
@ -143,7 +152,7 @@ public class BaseJpaResourceProviderPatientR5 extends JpaResourceProviderR5<Pati
startRequest(theServletRequest);
try {
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), theRequestDetails, toFlattenedPatientIdTokenParamList(theId));
return ((IFhirResourceDaoPatient<Patient>) getDao()).patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, toStringAndList(theContent), toStringAndList(theNarrative), toStringAndList(theFilter), toStringAndList(theTypes), theRequestDetails, toFlattenedPatientIdTokenParamList(theId));
} finally {
endRequest(theServletRequest);
}

4
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/builder/QueryStack.java
View File

@ -1583,9 +1583,9 @@ public class QueryStack {
// expand out the pids
public void addPredicateEverythingOperation(String theResourceName, Long... theTargetPids) {
public void addPredicateEverythingOperation(String theResourceName, List<String> theTypeSourceResourceNames, Long... theTargetPids) {
ResourceLinkPredicateBuilder table = mySqlBuilder.addReferencePredicateBuilder(this, null);
Condition predicate = table.createEverythingPredicate(theResourceName, theTargetPids);
Condition predicate = table.createEverythingPredicate(theResourceName, theTypeSourceResourceNames, theTargetPids);
mySqlBuilder.addPredicate(predicate);
}

35
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/builder/SearchBuilder.java
View File

@ -118,6 +118,7 @@ import javax.persistence.criteria.From;
import javax.persistence.criteria.Predicate;
import javax.persistence.criteria.Root;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.Collection;
import java.util.Collections;
import java.util.HashMap;
@ -552,7 +553,12 @@ public class SearchBuilder implements ISearchBuilder {
}
queryStack3.addPredicateEverythingOperation(myResourceName, targetPids.toArray(new Long[0]));
List<String> typeSourceResources = new ArrayList<>();
if (myParams.get(Constants.PARAM_TYPE) != null) {
typeSourceResources.addAll(extractTypeSourceResourcesFromParams());
}
queryStack3.addPredicateEverythingOperation(myResourceName, typeSourceResources, targetPids.toArray(new Long[0]));
} else {
/*
* If we're doing a filter, always use the resource table as the root - This avoids the possibility of
@ -637,6 +643,29 @@ public class SearchBuilder implements ISearchBuilder {
return Optional.of(executor);
}
private Collection<String> extractTypeSourceResourcesFromParams() {
List<List<IQueryParameterType>> listOfList = myParams.get(Constants.PARAM_TYPE);
// first off, let's flatten the list of list
List<IQueryParameterType> iQueryParameterTypesList = listOfList.stream().flatMap(List::stream).collect(Collectors.toList());
// then, extract all elements of each CSV into one big list
List<String> resourceTypes = iQueryParameterTypesList
.stream()
.map(param -> ((StringParam) param).getValue())
.map(csvString -> List.of(csvString.split(",")))
.flatMap(List::stream).collect(Collectors.toList());
// remove leading/trailing whitespaces if any and remove duplicates
Set<String> retVal = resourceTypes
.stream()
.map(String::trim)
.collect(Collectors.toSet());
return retVal;
}
private boolean isPotentiallyContainedReferenceParameterExistsAtRoot(SearchParameterMap theParams) {
return myModelConfig.isIndexOnContainedResources() && theParams.values().stream()
.flatMap(Collection::stream)
@ -1475,8 +1504,8 @@ public class SearchBuilder implements ISearchBuilder {
myOffset = myParams.getOffset();
myRequest = theRequest;
// Includes are processed inline for $everything query
if (myParams.getEverythingMode() != null) {
// Includes are processed inline for $everything query when we don't have a '_type' specified
if (myParams.getEverythingMode() != null && !myParams.containsKey(Constants.PARAM_TYPE)) {
myFetchIncludesForEverythingOperation = true;
}

19
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/search/builder/predicate/ResourceLinkPredicateBuilder.java
View File

@ -20,6 +20,7 @@ package ca.uhn.fhir.jpa.search.builder.predicate;
* #L%
*/
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.context.BaseRuntimeChildDefinition;
import ca.uhn.fhir.context.BaseRuntimeElementDefinition;
import ca.uhn.fhir.context.ConfigurationException;
@ -27,7 +28,6 @@ import ca.uhn.fhir.context.RuntimeChildChoiceDefinition;
import ca.uhn.fhir.context.RuntimeChildResourceDefinition;
import ca.uhn.fhir.context.RuntimeResourceDefinition;
import ca.uhn.fhir.context.RuntimeSearchParam;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.interceptor.api.HookParams;
import ca.uhn.fhir.interceptor.api.IInterceptorBroadcaster;
import ca.uhn.fhir.interceptor.api.Pointcut;
@ -677,6 +677,7 @@ public class ResourceLinkPredicateBuilder extends BaseJoiningPredicateBuilder {
private IQueryParameterType toParameterType(RuntimeSearchParam theParam, String theQualifier, String theValueAsQueryToken) {
IQueryParameterType qp = toParameterType(theParam);
qp.setValueAsQueryToken(getFhirContext(), theParam.getName(), theQualifier, theValueAsQueryToken);
return qp;
}
@ -688,14 +689,24 @@ public class ResourceLinkPredicateBuilder extends BaseJoiningPredicateBuilder {
}
@Nonnull
public Condition createEverythingPredicate(String theResourceName, Long... theTargetPids) {
public Condition createEverythingPredicate(String theResourceName, List<String> theSourceResourceNames, Long... theTargetPids) {
Condition condition;
if (theTargetPids != null && theTargetPids.length >= 1) {
// if resource ids are provided, we'll create the predicate
// with ids in or equal to this value
return toEqualToOrInPredicate(myColumnTargetResourceId, generatePlaceholders(Arrays.asList(theTargetPids)));
condition = toEqualToOrInPredicate(myColumnTargetResourceId, generatePlaceholders(Arrays.asList(theTargetPids)));
} else {
// ... otherwise we look for resource types
return BinaryCondition.equalTo(myColumnTargetResourceType, generatePlaceholder(theResourceName));
condition = BinaryCondition.equalTo(myColumnTargetResourceType, generatePlaceholder(theResourceName));
}
if (!theSourceResourceNames.isEmpty()) {
// if source resources are provided, add on predicate for _type operation
Condition typeCondition = toEqualToOrInPredicate(myColumnSrcType, generatePlaceholders(theSourceResourceNames));
condition = toAndPredicate(List.of(condition, typeCondition));
}
return condition;
}
}

20
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/api/TermCodeSystemDeleteJobSvc.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.term.api;
/*-
* #%L
* HAPI FHIR JPA Server
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.jpa.dao.data.ITermCodeSystemDao;
import ca.uhn.fhir.jpa.dao.data.ITermCodeSystemVersionDao;
import ca.uhn.fhir.jpa.dao.data.ITermConceptDao;

20
hapi-fhir-jpaserver-base/src/main/java/ca/uhn/fhir/jpa/term/config/TermCodeSystemConfig.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.term.config;
/*-
* #%L
* HAPI FHIR JPA Server
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.jpa.term.TermConceptDaoSvc;
import ca.uhn.fhir.jpa.term.TermDeferredStorageSvcImpl;
import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;

2
hapi-fhir-jpaserver-cql/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-mdm/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

1
hapi-fhir-jpaserver-mdm/src/test/java/ca/uhn/fhir/jpa/mdm/interceptor/MdmSearchExpandingInterceptorIT.java
View File

@ -187,6 +187,7 @@ public class MdmSearchExpandingInterceptorIT extends BaseMdmR4Test {
null,
null,
null,
null,
theDetails
);
return res;

2
hapi-fhir-jpaserver-model/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-searchparam/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-subscription/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-jpaserver-test-utilities/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

18
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/FhirResourceDaoDstu2SearchFtTest.java
View File

@ -136,16 +136,16 @@ public class FhirResourceDaoDstu2SearchFtTest extends BaseJpaDstu2Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, mySrd));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, null, mySrd));
assertThat(actual, containsInAnyOrder(ptId1, obsId1, devId1));
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obstext1")));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, null, param, null, mySrd));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, null, param, null, null, mySrd));
assertThat(actual, containsInAnyOrder(ptId1, obsId1, devId1));
request = mock(HttpServletRequest.class);
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, null, null, null, mySrd));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, null, null, null, null, mySrd));
assertThat(actual, containsInAnyOrder(ptId1, obsId1, obsId2, devId1));
/*
@ -161,7 +161,7 @@ public class FhirResourceDaoDstu2SearchFtTest extends BaseJpaDstu2Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, mySrd));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, null, mySrd));
assertThat(actual, containsInAnyOrder(ptId1, obsId1, obsId4, devId1));
/*
@ -177,7 +177,7 @@ public class FhirResourceDaoDstu2SearchFtTest extends BaseJpaDstu2Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, mySrd));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, null, mySrd));
assertThat(actual, containsInAnyOrder(ptId1, obsId4));
}
@ -228,11 +228,11 @@ public class FhirResourceDaoDstu2SearchFtTest extends BaseJpaDstu2Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, mySrd, null));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, null, mySrd, null));
assertThat(actual, containsInAnyOrder(ptId1, obsId1, devId1));
request = mock(HttpServletRequest.class);
actual = toUnqualifiedVersionlessIds(myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, mySrd, null));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null,null, mySrd, null));
assertThat(actual, containsInAnyOrder(ptId1, obsId1, obsId2, devId1, ptId2, obsId3));
/*
@ -248,7 +248,7 @@ public class FhirResourceDaoDstu2SearchFtTest extends BaseJpaDstu2Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, mySrd, null));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, null, mySrd, null));
assertThat(actual, containsInAnyOrder(ptId2, ptId1, obsId1, obsId4, devId1));
/*
@ -264,7 +264,7 @@ public class FhirResourceDaoDstu2SearchFtTest extends BaseJpaDstu2Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, mySrd, null));
actual = toUnqualifiedVersionlessIds(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, null, mySrd, null));
assertThat(actual, containsInAnyOrder(ptId1, obsId4));
}

4
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/dstu2/FhirResourceDaoDstu2SearchNoFtTest.java
View File

@ -153,11 +153,11 @@ public class FhirResourceDaoDstu2SearchNoFtTest extends BaseJpaDstu2Test {
IIdType moId = myMedicationOrderDao.create(mo, mySrd).getId().toUnqualifiedVersionless();
HttpServletRequest request = mock(HttpServletRequest.class);
IBundleProvider resp = myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, mySrd, null);
IBundleProvider resp = myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null,null, mySrd, null);
assertThat(toUnqualifiedVersionlessIds(resp), containsInAnyOrder(orgId, medId, patId, moId, patId2));
request = mock(HttpServletRequest.class);
resp = myPatientDao.patientInstanceEverything(request, patId, null, null, null, null, null, null, null, mySrd);
resp = myPatientDao.patientInstanceEverything(request, patId, null, null, null, null, null, null, null, null, mySrd);
assertThat(toUnqualifiedVersionlessIds(resp), containsInAnyOrder(orgId, medId, patId, moId));
}

18
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3SearchFtTest.java
View File

@ -230,16 +230,16 @@ public class FhirResourceDaoDstu3SearchFtTest extends BaseJpaDstu3Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, mockSrd()));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, null, mockSrd()));
assertThat(actual, containsInAnyOrder(toValues(ptId1, obsId1, devId1)));
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obstext1")));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, null, param, null, mockSrd()));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, null, param, null, null, mockSrd()));
assertThat(actual, containsInAnyOrder(toValues(ptId1, obsId1, devId1)));
request = mock(HttpServletRequest.class);
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, null, null, null, mockSrd()));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, null, null, null, null, mockSrd()));
assertThat(actual, containsInAnyOrder(toValues(ptId1, obsId1, obsId2, devId1)));
/*
@ -255,7 +255,7 @@ public class FhirResourceDaoDstu3SearchFtTest extends BaseJpaDstu3Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, mockSrd()));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, null, mockSrd()));
assertThat(actual, containsInAnyOrder(toValues(ptId1, obsId1, obsId4, devId1)));
/*
@ -271,7 +271,7 @@ public class FhirResourceDaoDstu3SearchFtTest extends BaseJpaDstu3Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, mockSrd()));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientInstanceEverything(request, ptId1, null, null, null, null, param, null, null, null, mockSrd()));
assertThat(actual, containsInAnyOrder(toValues(ptId1, obsId4)));
}
@ -322,11 +322,11 @@ public class FhirResourceDaoDstu3SearchFtTest extends BaseJpaDstu3Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, mockSrd(), null));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, null, mockSrd(), null));
assertThat(actual, containsInAnyOrder(toValues(ptId1, obsId1, devId1)));
request = mock(HttpServletRequest.class);
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, mockSrd(), null));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, null, mockSrd(), null));
assertThat(actual, containsInAnyOrder(toValues(ptId1, obsId1, obsId2, devId1, ptId2, obsId3)));
/*
@ -342,7 +342,7 @@ public class FhirResourceDaoDstu3SearchFtTest extends BaseJpaDstu3Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, mockSrd(), null));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, null, mockSrd(), null));
assertThat(actual, containsInAnyOrder(toValues(ptId1, ptId2, obsId1, obsId4, devId1)));
/*
@ -358,7 +358,7 @@ public class FhirResourceDaoDstu3SearchFtTest extends BaseJpaDstu3Test {
param = new StringAndListParam();
param.addAnd(new StringOrListParam().addOr(new StringParam("obsvalue1")));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, mockSrd(), null));
actual = toUnqualifiedVersionlessIdValues(myPatientDao.patientTypeEverything(request, null, null, null, null, param, null, null, null, mockSrd(), null));
assertThat(actual, containsInAnyOrder(toValues(ptId1, obsId4)));
}

6
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/dstu3/FhirResourceDaoDstu3SearchNoFtTest.java
View File

@ -249,11 +249,11 @@ public class FhirResourceDaoDstu3SearchNoFtTest extends BaseJpaDstu3Test {
IIdType moId = myMedicationRequestDao.create(mo, mySrd).getId().toUnqualifiedVersionless();
HttpServletRequest request = mock(HttpServletRequest.class);
IBundleProvider resp = myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, mySrd, null);
IBundleProvider resp = myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, null, mySrd, null);
assertThat(toUnqualifiedVersionlessIds(resp), containsInAnyOrder(orgId, medId, patId, moId, patId2));
request = mock(HttpServletRequest.class);
resp = myPatientDao.patientInstanceEverything(request, patId, null, null, null, null, null, null, null, mySrd);
resp = myPatientDao.patientInstanceEverything(request, patId, null, null, null, null, null, null, null, null, mySrd);
assertThat(toUnqualifiedVersionlessIds(resp), containsInAnyOrder(orgId, medId, patId, moId));
}
@ -281,7 +281,7 @@ public class FhirResourceDaoDstu3SearchNoFtTest extends BaseJpaDstu3Test {
SearchParameterMap map = new SearchParameterMap();
map.setEverythingMode(EverythingModeEnum.PATIENT_INSTANCE);
IPrimitiveType<Integer> count = new IntegerType(1000);
IBundleProvider everything = myPatientDao.patientInstanceEverything(mySrd.getServletRequest(), new IdType("Patient/A161443"), count, null, null, null, null, null, null, mySrd);
IBundleProvider everything = myPatientDao.patientInstanceEverything(mySrd.getServletRequest(), new IdType("Patient/A161443"), count, null, null, null, null, null, null, null, mySrd);
TreeSet<String> ids = new TreeSet<>(toUnqualifiedVersionlessIdValues(everything));
assertThat(ids, hasItem("List/A161444"));

8
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchNoFtTest.java
View File

@ -852,7 +852,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
HttpServletRequest request = mock(HttpServletRequest.class);
myCaptureQueriesListener.clear();
myCaptureQueriesListener.setCaptureQueryStackTrace(true);
IBundleProvider resp = myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, mySrd, null);
IBundleProvider resp = myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, null, mySrd, null);
List<IIdType> actual = toUnqualifiedVersionlessIds(resp);
myCaptureQueriesListener.logSelectQueriesForCurrentThread();
assertThat(actual, containsInAnyOrder(orgId, medId, patId, moId, patId2));
@ -860,12 +860,12 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
// Specific patient ID with linked stuff
request = mock(HttpServletRequest.class);
resp = myPatientDao.patientInstanceEverything(request, patId, null, null, null, null, null, null, null, mySrd);
resp = myPatientDao.patientInstanceEverything(request, patId, null, null, null, null, null, null, null, null, mySrd);
assertThat(toUnqualifiedVersionlessIds(resp), containsInAnyOrder(orgId, medId, patId, moId));
// Specific patient ID with no linked stuff
request = mock(HttpServletRequest.class);
resp = myPatientDao.patientInstanceEverything(request, patId2, null, null, null, null, null, null, null, mySrd);
resp = myPatientDao.patientInstanceEverything(request, patId2, null, null, null, null, null, null, null, null, mySrd);
assertThat(toUnqualifiedVersionlessIds(resp), containsInAnyOrder(patId2, orgId));
}
@ -894,7 +894,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
SearchParameterMap map = new SearchParameterMap();
map.setEverythingMode(EverythingModeEnum.PATIENT_INSTANCE);
IPrimitiveType<Integer> count = new IntegerType(1000);
IBundleProvider everything = myPatientDao.patientInstanceEverything(mySrd.getServletRequest(), new IdType("Patient/A161443"), count, null, null, null, null, null, null, mySrd);
IBundleProvider everything = myPatientDao.patientInstanceEverything(mySrd.getServletRequest(), new IdType("Patient/A161443"), count, null, null, null, null, null, null, null, mySrd);
TreeSet<String> ids = new TreeSet<>(toUnqualifiedVersionlessIdValues(everything));
assertThat(ids, hasItem("List/A161444"));

6
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/dao/r4/FhirResourceDaoR4SearchNoHashesTest.java
View File

@ -383,11 +383,11 @@ public class FhirResourceDaoR4SearchNoHashesTest extends BaseJpaR4Test {
IIdType moId = myMedicationRequestDao.create(mo, mySrd).getId().toUnqualifiedVersionless();
HttpServletRequest request = mock(HttpServletRequest.class);
IBundleProvider resp = myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, mySrd, null);
IBundleProvider resp = myPatientDao.patientTypeEverything(request, null, null, null, null, null, null, null, null, mySrd, null);
assertThat(toUnqualifiedVersionlessIds(resp), containsInAnyOrder(orgId, medId, patId, moId, patId2));
request = mock(HttpServletRequest.class);
resp = myPatientDao.patientInstanceEverything(request, patId, null, null, null, null, null, null, null, mySrd);
resp = myPatientDao.patientInstanceEverything(request, patId, null, null, null, null, null, null, null, null, mySrd);
assertThat(toUnqualifiedVersionlessIds(resp), containsInAnyOrder(orgId, medId, patId, moId));
}
@ -415,7 +415,7 @@ public class FhirResourceDaoR4SearchNoHashesTest extends BaseJpaR4Test {
SearchParameterMap map = new SearchParameterMap();
map.setEverythingMode(EverythingModeEnum.PATIENT_INSTANCE);
IPrimitiveType<Integer> count = new IntegerType(1000);
IBundleProvider everything = myPatientDao.patientInstanceEverything(mySrd.getServletRequest(), new IdType("Patient/A161443"), count, null, null, null, null, null, null, mySrd);
IBundleProvider everything = myPatientDao.patientInstanceEverything(mySrd.getServletRequest(), new IdType("Patient/A161443"), count, null, null, null, null, null, null, null, mySrd);
TreeSet<String> ids = new TreeSet<>(toUnqualifiedVersionlessIdValues(everything));
assertThat(ids, hasItem("List/A161444"));

147
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/provider/dstu3/ResourceProviderDstu3Test.java
View File

@ -1723,6 +1723,153 @@ public class ResourceProviderDstu3Test extends BaseResourceProviderDstu3Test {
assertThat(ids, not(containsInRelativeOrder(c3Id)));
}
@Test
public void testEverythingPatientInstanceWithTypeParameter() {
String methodName = "testEverythingPatientInstanceWithTypeParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Test for only one patient
Parameters parameters = new Parameters();
parameters.addParameter().setName(Constants.PARAM_TYPE).setValue(new StringType("Condition, Observation"));
myCaptureQueriesListener.clear();
Parameters output = ourClient.operation().onInstance(p1Id).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(Bundle.BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, not(hasItem(o1Id)));
assertThat(ids, not(hasItem(m1Id)));
}
@Test
public void testEverythingPatientTypeWithTypeParameter() {
String methodName = "testEverythingPatientTypeWithTypeParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Test for only one patient
Parameters parameters = new Parameters();
parameters.addParameter().setName(Constants.PARAM_TYPE).setValue(new StringType("Condition, Observation"));
myCaptureQueriesListener.clear();
Parameters output = ourClient.operation().onType(Patient.class).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(Bundle.BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, not(hasItem(o1Id)));
assertThat(ids, not(hasItem(m1Id)));
}
@Test
public void testEverythingPatientTypeWithTypeAndIdParameter() {
String methodName = "testEverythingPatientTypeWithTypeAndIdParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Patient 2 stuff.
IIdType o2Id = createOrganization(methodName, "2");
IIdType p2Id = createPatientWithIndexAtOrganization(methodName, "2", o2Id);
IIdType c2Id = createConditionForPatient(methodName, "2", p2Id);
IIdType obs2Id = createObservationForPatient(p2Id, "2");
IIdType m2Id = createMedicationRequestForPatient(p2Id, "2");
//Test for only patient 1
Parameters parameters = new Parameters();
parameters.addParameter().setName(Constants.PARAM_TYPE).setValue(new StringType("Condition, Observation"));
parameters.addParameter().setName(Constants.PARAM_ID).setValue(new IdType(p1Id.getIdPart()));
myCaptureQueriesListener.clear();
Parameters output = ourClient.operation().onType(Patient.class).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(Bundle.BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, not(hasItem(o1Id)));
assertThat(ids, not(hasItem(m1Id)));
assertThat(ids, not(hasItem(p2Id)));
assertThat(ids, not(hasItem(o2Id)));
}
private IIdType createOrganization(String methodName, String s) {
Organization o1 = new Organization();
o1.setName(methodName + s);
return ourClient.create().resource(o1).execute().getId().toUnqualifiedVersionless();
}
private IIdType createPatientWithIndexAtOrganization(String theMethodName, String theIndex, IIdType theOrganizationId) {
Patient p1 = new Patient();
p1.addName().setFamily(theMethodName + theIndex);
p1.getManagingOrganization().setReferenceElement(theOrganizationId);
IIdType p1Id = ourClient.create().resource(p1).execute().getId().toUnqualifiedVersionless();
return p1Id;
}
private IIdType createConditionForPatient(String theMethodName, String theIndex, IIdType thePatientId) {
Condition c = new Condition();
c.addIdentifier().setValue(theMethodName + theIndex);
if (thePatientId != null) {
c.getSubject().setReferenceElement(thePatientId);
}
IIdType cId = ourClient.create().resource(c).execute().getId().toUnqualifiedVersionless();
return cId;
}
private IIdType createMedicationRequestForPatient(IIdType thePatientId, String theIndex) {
MedicationRequest m = new MedicationRequest();
m.addIdentifier().setValue(theIndex);
if (thePatientId != null) {
m.getSubject().setReferenceElement(thePatientId);
}
IIdType mId = ourClient.create().resource(m).execute().getId().toUnqualifiedVersionless();
return mId;
}
private IIdType createObservationForPatient(IIdType thePatientId, String theIndex) {
Observation o = new Observation();
o.addIdentifier().setValue(theIndex);
if (thePatientId != null) {
o.getSubject().setReferenceElement(thePatientId);
}
IIdType oId = ourClient.create().resource(o).execute().getId().toUnqualifiedVersionless();
return oId;
}
@Test
public void testEverythingPatientWithLastUpdatedAndSort() throws Exception {
String methodName = "testEverythingWithLastUpdatedAndSort";

125
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/provider/r4/ResourceProviderR4Test.java
View File

@ -103,6 +103,7 @@ import org.hl7.fhir.r4.model.ImagingStudy;
import org.hl7.fhir.r4.model.InstantType;
import org.hl7.fhir.r4.model.IntegerType;
import org.hl7.fhir.r4.model.Location;
import org.hl7.fhir.r4.model.MeasureReport;
import org.hl7.fhir.r4.model.Media;
import org.hl7.fhir.r4.model.Medication;
import org.hl7.fhir.r4.model.MedicationAdministration;
@ -174,6 +175,7 @@ import static ca.uhn.fhir.rest.param.BaseParamWithPrefix.MSG_PREFIX_INVALID_FORM
import static ca.uhn.fhir.util.TestUtil.sleepAtLeast;
import static org.apache.commons.lang3.StringUtils.isNotBlank;
import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.allOf;
import static org.hamcrest.Matchers.contains;
import static org.hamcrest.Matchers.containsInAnyOrder;
import static org.hamcrest.Matchers.containsInRelativeOrder;
@ -2299,6 +2301,109 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
}
}
@Test
public void testEverythingPatientInstanceWithTypeParameter() {
String methodName = "testEverythingPatientInstanceWithTypeParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Test for only one patient
Parameters parameters = new Parameters();
parameters.addParameter("_type", "Condition, Observation");
myCaptureQueriesListener.clear();
Parameters output = myClient.operation().onInstance(p1Id).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, not(hasItem(o1Id)));
assertThat(ids, not(hasItem(m1Id)));
}
@Test
public void testEverythingPatientTypeWithTypeParameter() {
String methodName = "testEverythingPatientTypeWithTypeParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Test for only one patient
Parameters parameters = new Parameters();
parameters.addParameter("_type", "Condition, Observation");
myCaptureQueriesListener.clear();
Parameters output = myClient.operation().onType(Patient.class).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, not(hasItem(o1Id)));
assertThat(ids, not(hasItem(m1Id)));
}
@Test
public void testEverythingPatientTypeWithTypeAndIdParameter() {
String methodName = "testEverythingPatientTypeWithTypeAndIdParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Patient 2 stuff.
IIdType o2Id = createOrganization(methodName, "2");
IIdType p2Id = createPatientWithIndexAtOrganization(methodName, "2", o2Id);
IIdType c2Id = createConditionForPatient(methodName, "2", p2Id);
IIdType obs2Id = createObservationForPatient(p2Id, "2");
IIdType m2Id = createMedicationRequestForPatient(p2Id, "2");
//Test for only patient 1
Parameters parameters = new Parameters();
parameters.addParameter("_type", "Condition, Observation");
parameters.addParameter("_id", p1Id.getIdPart());
myCaptureQueriesListener.clear();
Parameters output = myClient.operation().onType(Patient.class).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, not(hasItem(o1Id)));
assertThat(ids, not(hasItem(m1Id)));
assertThat(ids, not(hasItem(p2Id)));
assertThat(ids, not(hasItem(o2Id)));
}
@Test
public void testEverythingPatientWorksWithForcedId() {
String methodName = "testEverythingPatientType";
@ -6932,4 +7037,24 @@ public class ResourceProviderR4Test extends BaseResourceProviderR4Test {
return cId;
}
private IIdType createMedicationRequestForPatient(IIdType thePatientId, String theIndex) {
MedicationRequest m = new MedicationRequest();
m.addIdentifier().setValue(theIndex);
if (thePatientId != null) {
m.getSubject().setReferenceElement(thePatientId);
}
IIdType mId = myClient.create().resource(m).execute().getId().toUnqualifiedVersionless();
return mId;
}
private IIdType createObservationForPatient(IIdType thePatientId, String theIndex) {
Observation o = new Observation();
o.addIdentifier().setValue(theIndex);
if (thePatientId != null) {
o.getSubject().setReferenceElement(thePatientId);
}
IIdType oId = myClient.create().resource(o).execute().getId().toUnqualifiedVersionless();
return oId;
}
}

161
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/provider/r5/ResourceProviderR5Test.java
View File

@ -1,8 +1,10 @@
package ca.uhn.fhir.jpa.provider.r5;
import static com.healthmarketscience.sqlbuilder.Conditions.not;
import static org.hamcrest.MatcherAssert.assertThat;
import static org.hamcrest.Matchers.containsInAnyOrder;
import static org.hamcrest.Matchers.containsString;
import static org.hamcrest.Matchers.hasItem;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertNotEquals;
@ -18,16 +20,22 @@ import org.apache.http.client.methods.HttpGet;
import org.apache.http.client.methods.HttpPost;
import org.apache.http.entity.ContentType;
import org.apache.http.entity.StringEntity;
import org.hamcrest.Matchers;
import org.hl7.fhir.instance.model.api.IIdType;
import org.hl7.fhir.r5.model.Bundle;
import org.hl7.fhir.r5.model.Bundle.BundleEntryComponent;
import org.hl7.fhir.r5.model.CapabilityStatement;
import org.hl7.fhir.r5.model.CodeableConcept;
import org.hl7.fhir.r5.model.Condition;
import org.hl7.fhir.r5.model.DateTimeType;
import org.hl7.fhir.r5.model.IdType;
import org.hl7.fhir.r5.model.Medication;
import org.hl7.fhir.r5.model.MedicationRequest;
import org.hl7.fhir.r5.model.Observation;
import org.hl7.fhir.r5.model.Observation.ObservationComponentComponent;
import org.hl7.fhir.r5.model.OperationOutcome;
import org.hl7.fhir.r5.model.Organization;
import org.hl7.fhir.r5.model.Parameters;
import org.hl7.fhir.r5.model.Patient;
import org.hl7.fhir.r5.model.Quantity;
import org.junit.jupiter.api.AfterEach;
@ -363,7 +371,7 @@ public class ResourceProviderR5Test extends BaseResourceProviderR5Test {
ourLog.info("Bundle: \n" + myFhirCtx.newJsonParser().setPrettyPrint(true).encodeResourceToString(found));
List<IdType> list = toUnqualifiedVersionlessIds(found);
List<IIdType> list = toUnqualifiedVersionlessIds(found);
assertEquals(4, found.getEntry().size());
assertEquals(oid3, list.get(0));
assertEquals(oid1, list.get(1));
@ -371,8 +379,155 @@ public class ResourceProviderR5Test extends BaseResourceProviderR5Test {
assertEquals(oid2, list.get(3));
}
protected List<IdType> toUnqualifiedVersionlessIds(Bundle theFound) {
List<IdType> retVal = new ArrayList<>();
@Test
public void testEverythingPatientInstanceWithTypeParameter() {
String methodName = "testEverythingPatientInstanceWithTypeParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Test for only one patient
Parameters parameters = new Parameters();
parameters.addParameter("_type", "Condition, Observation");
myCaptureQueriesListener.clear();
Parameters output = myClient.operation().onInstance(p1Id).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(Bundle.BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, Matchers.not(hasItem(o1Id)));
assertThat(ids, Matchers.not(hasItem(m1Id)));
}
@Test
public void testEverythingPatientTypeWithTypeParameter() {
String methodName = "testEverythingPatientTypeWithTypeParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Test for only one patient
Parameters parameters = new Parameters();
parameters.addParameter("_type", "Condition, Observation");
myCaptureQueriesListener.clear();
Parameters output = myClient.operation().onType(Patient.class).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(Bundle.BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, Matchers.not(hasItem(o1Id)));
assertThat(ids, Matchers.not(hasItem(m1Id)));
}
@Test
public void testEverythingPatientTypeWithTypeAndIdParameter() {
String methodName = "testEverythingPatientTypeWithTypeAndIdParameter";
//Patient 1 stuff.
IIdType o1Id = createOrganization(methodName, "1");
IIdType p1Id = createPatientWithIndexAtOrganization(methodName, "1", o1Id);
IIdType c1Id = createConditionForPatient(methodName, "1", p1Id);
IIdType obs1Id = createObservationForPatient(p1Id, "1");
IIdType m1Id = createMedicationRequestForPatient(p1Id, "1");
//Patient 2 stuff.
IIdType o2Id = createOrganization(methodName, "2");
IIdType p2Id = createPatientWithIndexAtOrganization(methodName, "2", o2Id);
IIdType c2Id = createConditionForPatient(methodName, "2", p2Id);
IIdType obs2Id = createObservationForPatient(p2Id, "2");
IIdType m2Id = createMedicationRequestForPatient(p2Id, "2");
//Test for only patient 1
Parameters parameters = new Parameters();
parameters.addParameter("_type", "Condition, Observation");
parameters.addParameter("_id", p1Id.getIdPart());
myCaptureQueriesListener.clear();
Parameters output = myClient.operation().onType(Patient.class).named("everything").withParameters(parameters).execute();
ourLog.info(myFhirContext.newJsonParser().setPrettyPrint(true).encodeResourceToString(output));
Bundle b = (Bundle) output.getParameter().get(0).getResource();
myCaptureQueriesListener.logSelectQueries();
assertEquals(Bundle.BundleType.SEARCHSET, b.getType());
List<IIdType> ids = toUnqualifiedVersionlessIds(b);
assertThat(ids, containsInAnyOrder(p1Id, c1Id, obs1Id));
assertThat(ids, Matchers.not(hasItem(o1Id)));
assertThat(ids, Matchers.not(hasItem(m1Id)));
assertThat(ids, Matchers.not(hasItem(p2Id)));
assertThat(ids, Matchers.not(hasItem(o2Id)));
}
private IIdType createOrganization(String methodName, String s) {
Organization o1 = new Organization();
o1.setName(methodName + s);
return myClient.create().resource(o1).execute().getId().toUnqualifiedVersionless();
}
public IIdType createPatientWithIndexAtOrganization(String theMethodName, String theIndex, IIdType theOrganizationId) {
Patient p1 = new Patient();
p1.addName().setFamily(theMethodName + theIndex);
p1.getManagingOrganization().setReferenceElement(theOrganizationId);
IIdType p1Id = myClient.create().resource(p1).execute().getId().toUnqualifiedVersionless();
return p1Id;
}
public IIdType createConditionForPatient(String theMethodName, String theIndex, IIdType thePatientId) {
Condition c = new Condition();
c.addIdentifier().setValue(theMethodName + theIndex);
if (thePatientId != null) {
c.getSubject().setReferenceElement(thePatientId);
}
IIdType cId = myClient.create().resource(c).execute().getId().toUnqualifiedVersionless();
return cId;
}
private IIdType createMedicationRequestForPatient(IIdType thePatientId, String theIndex) {
MedicationRequest m = new MedicationRequest();
m.addIdentifier().setValue(theIndex);
if (thePatientId != null) {
m.getSubject().setReferenceElement(thePatientId);
}
IIdType mId = myClient.create().resource(m).execute().getId().toUnqualifiedVersionless();
return mId;
}
private IIdType createObservationForPatient(IIdType thePatientId, String theIndex) {
Observation o = new Observation();
o.addIdentifier().setValue(theIndex);
if (thePatientId != null) {
o.getSubject().setReferenceElement(thePatientId);
}
IIdType oId = myClient.create().resource(o).execute().getId().toUnqualifiedVersionless();
return oId;
}
protected List<IIdType> toUnqualifiedVersionlessIds(Bundle theFound) {
List<IIdType> retVal = new ArrayList<>();
for (BundleEntryComponent next : theFound.getEntry()) {
if (next.getResource()!= null) {
retVal.add(next.getResource().getIdElement().toUnqualifiedVersionless());

12
hapi-fhir-jpaserver-test-utilities/src/test/java/ca/uhn/fhir/jpa/search/builder/predicate/ResourceLinkPredicateBuilderTest.java
View File

@ -12,6 +12,8 @@ import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.mockito.Mockito;
import java.util.ArrayList;
public class ResourceLinkPredicateBuilderTest {
private ResourceLinkPredicateBuilder myResourceLinkPredicateBuilder;
@ -34,23 +36,23 @@ public class ResourceLinkPredicateBuilderTest {
@Test
public void createEverythingPredicate_withListOfPids_returnsInPredicate() {
Condition condition = myResourceLinkPredicateBuilder.createEverythingPredicate("Patient",
1l, 2l);
Condition condition = myResourceLinkPredicateBuilder.createEverythingPredicate("Patient", new ArrayList<>(),
1l, 2l); //fixme
Assertions.assertTrue(condition instanceof InCondition);
}
@Test
public void createEverythingPredicate_withSinglePid_returnsInCondition() {
Condition condition = myResourceLinkPredicateBuilder.createEverythingPredicate("Patient",
1l);
Condition condition = myResourceLinkPredicateBuilder.createEverythingPredicate("Patient", new ArrayList<>(),
1l); //fixme
Assertions.assertTrue(condition instanceof InCondition);
}
@Test
public void createEverythingPredicate_withNoPids_returnsBinaryCondition() {
Condition condition = myResourceLinkPredicateBuilder.createEverythingPredicate("Patient",
Condition condition = myResourceLinkPredicateBuilder.createEverythingPredicate("Patient", new ArrayList<>(), //fixme
new Long[0]);
Assertions.assertTrue(condition instanceof BinaryCondition);

2
hapi-fhir-jpaserver-uhnfhirtest/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-server-mdm/pom.xml
View File

@ -7,7 +7,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-server-openapi/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-server/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-autoconfigure/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-apache/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
</parent>
<artifactId>hapi-fhir-spring-boot-sample-client-apache</artifactId>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-client-okhttp/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
</parent>
<artifactId>hapi-fhir-spring-boot-sample-client-okhttp</artifactId>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/hapi-fhir-spring-boot-sample-server-jersey/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
</parent>
<artifactId>hapi-fhir-spring-boot-sample-server-jersey</artifactId>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-samples/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir-spring-boot</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
</parent>
<artifactId>hapi-fhir-spring-boot-samples</artifactId>

2
hapi-fhir-spring-boot/hapi-fhir-spring-boot-starter/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-spring-boot/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-sql-migrate/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-batch2-jobs/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>

20
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/TermCodeSystemJobConfig.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.VoidModel;
import ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemdelete.DeleteCodeSystemCompletionHandler;
import ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemdelete.DeleteCodeSystemConceptsByVersionStep;

21
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemdelete/DeleteCodeSystemCompletionHandler.java
View File

@ -1,10 +1,29 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemdelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IJobCompletionHandler;
import ca.uhn.fhir.batch2.api.JobCompletionDetails;
import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteJobParameters;
import org.springframework.beans.factory.annotation.Autowired;
public class DeleteCodeSystemCompletionHandler
implements IJobCompletionHandler<TermCodeSystemDeleteJobParameters> {

21
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemdelete/DeleteCodeSystemConceptsByVersionStep.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemdelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IJobDataSink;
import ca.uhn.fhir.batch2.api.IJobStepWorker;
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
@ -9,7 +29,6 @@ import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.models.CodeSystemVersionPIDResult;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteJobParameters;
import org.jetbrains.annotations.NotNull;
import org.springframework.beans.factory.annotation.Autowired;
public class DeleteCodeSystemConceptsByVersionStep implements IJobStepWorker<TermCodeSystemDeleteJobParameters, CodeSystemVersionPIDResult, CodeSystemVersionPIDResult> {

21
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemdelete/DeleteCodeSystemStep.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemdelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.ChunkExecutionDetails;
import ca.uhn.fhir.batch2.api.IJobDataSink;
import ca.uhn.fhir.batch2.api.IReductionStepWorker;
@ -12,7 +32,6 @@ import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.models.CodeSystemVersionPIDResult;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteJobParameters;
import org.jetbrains.annotations.NotNull;
import org.springframework.beans.factory.annotation.Autowired;
public class DeleteCodeSystemStep implements IReductionStepWorker<TermCodeSystemDeleteJobParameters, CodeSystemVersionPIDResult, VoidModel> {

20
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemdelete/DeleteCodeSystemVersionStep.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemdelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IJobDataSink;
import ca.uhn.fhir.batch2.api.IJobStepWorker;
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;

21
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemdelete/ReadTermConceptVersionsStep.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemdelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IFirstJobStepWorker;
import ca.uhn.fhir.batch2.api.IJobDataSink;
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
@ -10,7 +30,6 @@ import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.models.CodeSystemVersionPIDResult;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteJobParameters;
import org.jetbrains.annotations.NotNull;
import org.springframework.beans.factory.annotation.Autowired;
import java.util.Iterator;

20
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemdelete/TermCodeSystemDeleteJobParametersValidator.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemdelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IJobParametersValidator;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteJobParameters;
import org.jetbrains.annotations.NotNull;

21
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemversiondelete/DeleteCodeSystemVersionCompletionHandler.java
View File

@ -1,10 +1,29 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemversiondelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IJobCompletionHandler;
import ca.uhn.fhir.batch2.api.JobCompletionDetails;
import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteVersionJobParameters;
import org.springframework.beans.factory.annotation.Autowired;
public class DeleteCodeSystemVersionCompletionHandler implements IJobCompletionHandler<TermCodeSystemDeleteVersionJobParameters> {

21
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemversiondelete/DeleteCodeSystemVersionFinalStep.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemversiondelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IJobDataSink;
import ca.uhn.fhir.batch2.api.ILastJobStepWorker;
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
@ -10,7 +30,6 @@ import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.models.CodeSystemVersionPIDResult;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteVersionJobParameters;
import org.jetbrains.annotations.NotNull;
import org.springframework.beans.factory.annotation.Autowired;
public class DeleteCodeSystemVersionFinalStep implements ILastJobStepWorker<TermCodeSystemDeleteVersionJobParameters, CodeSystemVersionPIDResult> {

21
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemversiondelete/DeleteCodeSystemVersionFirstStep.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemversiondelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IFirstJobStepWorker;
import ca.uhn.fhir.batch2.api.IJobDataSink;
import ca.uhn.fhir.batch2.api.JobExecutionFailedException;
@ -10,7 +30,6 @@ import ca.uhn.fhir.jpa.term.api.ITermCodeSystemDeleteJobSvc;
import ca.uhn.fhir.jpa.term.models.CodeSystemVersionPIDResult;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteVersionJobParameters;
import org.jetbrains.annotations.NotNull;
import org.springframework.beans.factory.annotation.Autowired;
public class DeleteCodeSystemVersionFirstStep implements IFirstJobStepWorker<TermCodeSystemDeleteVersionJobParameters, CodeSystemVersionPIDResult> {

20
hapi-fhir-storage-batch2-jobs/src/main/java/ca/uhn/fhir/batch2/jobs/termcodesystem/codesystemversiondelete/DeleteCodeSystemVersionParameterValidator.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.jobs.termcodesystem.codesystemversiondelete;
/*-
* #%L
* hapi-fhir-storage-batch2-jobs
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.batch2.api.IJobParametersValidator;
import ca.uhn.fhir.jpa.term.models.TermCodeSystemDeleteVersionJobParameters;
import org.jetbrains.annotations.NotNull;

2
hapi-fhir-storage-batch2/pom.xml
View File

@ -6,7 +6,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-storage-mdm/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>

2
hapi-fhir-storage-test-utilities/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
<modelVersion>4.0.0</modelVersion>

2
hapi-fhir-storage/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

20
hapi-fhir-storage/src/main/java/ca/uhn/fhir/batch2/models/JobInstanceFetchRequest.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.batch2.models;
/*-
* #%L
* HAPI FHIR Storage api
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import org.springframework.data.domain.Sort;
public class JobInstanceFetchRequest {

13
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/api/dao/IFhirResourceDaoPatient.java
View File

@ -1,5 +1,6 @@
package ca.uhn.fhir.jpa.api.dao;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.rest.api.SortSpec;
import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.api.server.RequestDetails;
@ -34,9 +35,17 @@ import javax.servlet.http.HttpServletRequest;
public interface IFhirResourceDaoPatient<T extends IBaseResource> extends IFhirResourceDao<T> {
IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdate, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails);
default IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdate, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails){
return patientInstanceEverything(theServletRequest, theId, theCount, theOffset, theLastUpdate, theSort, theContent, theNarrative, theFilter, new StringAndListParam(), theRequestDetails);
}
IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSortSpec, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails, TokenOrListParam theId);
default IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSortSpec, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, RequestDetails theRequestDetails, TokenOrListParam theId){
return patientTypeEverything(theServletRequest, theCount, theOffset, theLastUpdated, theSortSpec, theContent, theNarrative, theFilter, new StringAndListParam(), theRequestDetails, theId);
}
IBundleProvider patientInstanceEverything(HttpServletRequest theServletRequest, IIdType theId, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdate, SortSpec theSort, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails);
IBundleProvider patientTypeEverything(HttpServletRequest theServletRequest, IPrimitiveType<Integer> theCount, IPrimitiveType<Integer> theOffset, DateRangeParam theLastUpdated, SortSpec theSortSpec, StringAndListParam theContent, StringAndListParam theNarrative, StringAndListParam theFilter, StringAndListParam theTypes, RequestDetails theRequestDetails, TokenOrListParam theId);
}

20
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/term/api/ITermCodeSystemDeleteJobSvc.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.term.api;
/*-
* #%L
* HAPI FHIR Storage api
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.jpa.term.models.CodeSystemConceptsDeleteResult;
import java.util.Iterator;

20
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/term/models/CodeSystemConceptsDeleteResult.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.term.models;
/*-
* #%L
* HAPI FHIR Storage api
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
public class CodeSystemConceptsDeleteResult {
private int myDeletedLinks;

20
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/term/models/CodeSystemVersionPIDResult.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.term.models;
/*-
* #%L
* HAPI FHIR Storage api
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.model.api.IModelJson;
import com.fasterxml.jackson.annotation.JsonProperty;

20
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/term/models/DeleteCodeSystemBaseParameters.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.term.models;
/*-
* #%L
* HAPI FHIR Storage api
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.model.api.IModelJson;
public class DeleteCodeSystemBaseParameters implements IModelJson {

20
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/term/models/TermCodeSystemDeleteJobParameters.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.term.models;
/*-
* #%L
* HAPI FHIR Storage api
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import com.fasterxml.jackson.annotation.JsonProperty;
public class TermCodeSystemDeleteJobParameters extends DeleteCodeSystemBaseParameters {

20
hapi-fhir-storage/src/main/java/ca/uhn/fhir/jpa/term/models/TermCodeSystemDeleteVersionJobParameters.java
View File

@ -1,5 +1,25 @@
package ca.uhn.fhir.jpa.term.models;
/*-
* #%L
* HAPI FHIR Storage api
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import com.fasterxml.jackson.annotation.JsonProperty;
public class TermCodeSystemDeleteVersionJobParameters extends DeleteCodeSystemBaseParameters {

2
hapi-fhir-structures-dstu2.1/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-dstu2/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-dstu3/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-hl7org-dstu2/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-r4/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-structures-r5/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

14
hapi-fhir-test-utilities/pom.xml
View File

@ -5,7 +5,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>
@ -31,18 +31,16 @@
<artifactId>hapi-fhir-client</artifactId>
<version>${project.version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.r4</artifactId>
<version>${fhir_core_version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.dstu3</artifactId>
<version>${fhir_core_version}</version>
</dependency>
<dependency>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>org.hl7.fhir.r4</artifactId>
<version>${fhir_core_version}</version>
</dependency>
<!-- General -->
<dependency>

25
hapi-fhir-test-utilities/src/main/java/ca/uhn/fhir/test/BaseFhirVersionParameterizedTest.java
View File

@ -1,14 +1,33 @@
package ca.uhn.fhir.test;
/*-
* #%L
* HAPI FHIR Test Utilities
* %%
* Copyright (C) 2014 - 2022 Smile CDR, Inc.
* %%
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
* #L%
*/
import ca.uhn.fhir.context.FhirContext;
import ca.uhn.fhir.context.FhirVersionEnum;
import ca.uhn.fhir.i18n.Msg;
import ca.uhn.fhir.rest.client.api.IGenericClient;
import ca.uhn.fhir.tls.TlsAuthentication;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.test.utilities.BaseRestServerHelper;
import ca.uhn.fhir.test.utilities.RestServerDstu3Helper;
import ca.uhn.fhir.test.utilities.RestServerR4Helper;
import ca.uhn.fhir.test.utilities.TlsAuthenticationTestHelper;
import ca.uhn.fhir.tls.TlsAuthentication;
import org.hl7.fhir.instance.model.api.IBaseResource;
import org.junit.jupiter.api.extension.RegisterExtension;
import org.junit.jupiter.params.provider.Arguments;

2
hapi-fhir-testpage-overlay/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-fhir</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu2.1/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu2/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

2
hapi-fhir-validation-resources-dstu3/pom.xml
View File

@ -4,7 +4,7 @@
<parent>
<groupId>ca.uhn.hapi.fhir</groupId>
<artifactId>hapi-deployable-pom</artifactId>
<version>6.1.0-PRE29-SNAPSHOT</version>
<version>6.1.0-PRE30-SNAPSHOT</version>
<relativePath>../hapi-deployable-pom/pom.xml</relativePath>
</parent>

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