Fix #1174 - Prevent serialization exception

This commit is contained in:
jamesagnew 2019-01-30 05:49:45 -05:00
parent 5d540d9208
commit 5f29e4fbf3
3 changed files with 58 additions and 10 deletions

View File

@ -255,7 +255,15 @@ public class DateParam extends BaseParamWithPrefix<DateParam> implements /*IQuer
return b.build(); return b.build();
} }
public class DateParamDateTimeHolder extends BaseDateTimeDt { public static class DateParamDateTimeHolder extends BaseDateTimeDt {
/**
* Constructor
*/
public DateParamDateTimeHolder() {
super();
}
@Override @Override
protected TemporalPrecisionEnum getDefaultPrecisionForDatatype() { protected TemporalPrecisionEnum getDefaultPrecisionForDatatype() {
return TemporalPrecisionEnum.SECOND; return TemporalPrecisionEnum.SECOND;

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@ -2,9 +2,9 @@ package ca.uhn.fhir.jpa.dao.r4;
import ca.uhn.fhir.jpa.config.CaptureQueriesListener; import ca.uhn.fhir.jpa.config.CaptureQueriesListener;
import ca.uhn.fhir.jpa.dao.DaoConfig; import ca.uhn.fhir.jpa.dao.DaoConfig;
import ca.uhn.fhir.jpa.model.entity.*;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap; import ca.uhn.fhir.jpa.searchparam.SearchParameterMap;
import ca.uhn.fhir.jpa.searchparam.SearchParameterMap.EverythingModeEnum; import ca.uhn.fhir.jpa.searchparam.SearchParameterMap.EverythingModeEnum;
import ca.uhn.fhir.jpa.model.entity.*;
import ca.uhn.fhir.jpa.util.TestUtil; import ca.uhn.fhir.jpa.util.TestUtil;
import ca.uhn.fhir.model.api.Include; import ca.uhn.fhir.model.api.Include;
import ca.uhn.fhir.model.api.TemporalPrecisionEnum; import ca.uhn.fhir.model.api.TemporalPrecisionEnum;
@ -14,9 +14,9 @@ import ca.uhn.fhir.rest.api.server.IBundleProvider;
import ca.uhn.fhir.rest.param.*; import ca.uhn.fhir.rest.param.*;
import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException; import ca.uhn.fhir.rest.server.exceptions.InvalidRequestException;
import ca.uhn.fhir.rest.server.exceptions.MethodNotAllowedException; import ca.uhn.fhir.rest.server.exceptions.MethodNotAllowedException;
import com.google.common.collect.Lists;
import org.apache.commons.io.IOUtils; import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils; import org.apache.commons.lang3.StringUtils;
import org.hibernate.engine.jdbc.internal.BasicFormatterImpl;
import org.hl7.fhir.instance.model.api.IAnyResource; import org.hl7.fhir.instance.model.api.IAnyResource;
import org.hl7.fhir.instance.model.api.IBaseResource; import org.hl7.fhir.instance.model.api.IBaseResource;
import org.hl7.fhir.instance.model.api.IIdType; import org.hl7.fhir.instance.model.api.IIdType;
@ -56,6 +56,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
myDaoConfig.setReuseCachedSearchResultsForMillis(new DaoConfig().getReuseCachedSearchResultsForMillis()); myDaoConfig.setReuseCachedSearchResultsForMillis(new DaoConfig().getReuseCachedSearchResultsForMillis());
myDaoConfig.setFetchSizeDefaultMaximum(new DaoConfig().getFetchSizeDefaultMaximum()); myDaoConfig.setFetchSizeDefaultMaximum(new DaoConfig().getFetchSizeDefaultMaximum());
myDaoConfig.setAllowContainsSearches(new DaoConfig().isAllowContainsSearches()); myDaoConfig.setAllowContainsSearches(new DaoConfig().isAllowContainsSearches());
myDaoConfig.setSearchPreFetchThresholds(new DaoConfig().getSearchPreFetchThresholds());
} }
@Before @Before
@ -617,7 +618,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
expect1.setResource(resource); expect1.setResource(resource);
expect1.calculateHashes(); expect1.calculateHashes();
assertThat("Got: \"" + results.toString()+"\"", results, containsInAnyOrder(expect0, expect1)); assertThat("Got: \"" + results.toString() + "\"", results, containsInAnyOrder(expect0, expect1));
} }
}); });
} }
@ -1063,7 +1064,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
QuantityParam v1 = new QuantityParam(ParamPrefixEnum.GREATERTHAN_OR_EQUALS, 150, "http://bar", "code1"); QuantityParam v1 = new QuantityParam(ParamPrefixEnum.GREATERTHAN_OR_EQUALS, 150, "http://bar", "code1");
SearchParameterMap map = new SearchParameterMap().setLoadSynchronous(true).add(param, v1); SearchParameterMap map = new SearchParameterMap().setLoadSynchronous(true).add(param, v1);
IBundleProvider result = myObservationDao.search(map); IBundleProvider result = myObservationDao.search(map);
assertThat("Got: "+ toUnqualifiedVersionlessIdValues(result), toUnqualifiedVersionlessIdValues(result), containsInAnyOrder(id1.getValue())); assertThat("Got: " + toUnqualifiedVersionlessIdValues(result), toUnqualifiedVersionlessIdValues(result), containsInAnyOrder(id1.getValue()));
} }
} }
@ -1095,7 +1096,7 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
CompositeParam<TokenParam, QuantityParam> val = new CompositeParam<>(v0, v1); CompositeParam<TokenParam, QuantityParam> val = new CompositeParam<>(v0, v1);
SearchParameterMap map = new SearchParameterMap().setLoadSynchronous(true).add(param, val); SearchParameterMap map = new SearchParameterMap().setLoadSynchronous(true).add(param, val);
IBundleProvider result = myObservationDao.search(map); IBundleProvider result = myObservationDao.search(map);
assertThat("Got: "+ toUnqualifiedVersionlessIdValues(result), toUnqualifiedVersionlessIdValues(result), containsInAnyOrder(id2.getValue())); assertThat("Got: " + toUnqualifiedVersionlessIdValues(result), toUnqualifiedVersionlessIdValues(result), containsInAnyOrder(id2.getValue()));
} }
{ {
TokenParam v0 = new TokenParam("http://foo", "code1"); TokenParam v0 = new TokenParam("http://foo", "code1");
@ -1143,6 +1144,40 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
} }
/**
* See #1174
*/
@Test
public void testSearchDateInSavedSearch() {
for (int i = 1; i <= 9; i++) {
Patient p1 = new Patient();
p1.getBirthDateElement().setValueAsString("1980-01-0" + i);
String id1 = myPatientDao.create(p1).getId().toUnqualifiedVersionless().getValue();
}
myDaoConfig.setSearchPreFetchThresholds(Lists.newArrayList(3, 6, 10));
{
// Don't load synchronous
SearchParameterMap map = new SearchParameterMap();
map.setLastUpdated(new DateRangeParam().setUpperBound(new DateParam(ParamPrefixEnum.LESSTHAN, "2022-01-01")));
IBundleProvider found = myPatientDao.search(map);
Set<String> dates = new HashSet<>();
for (int i = 0; i < 9; i++) {
Patient nextResource = (Patient) found.getResources(i, i + 1).get(0);
dates.add(nextResource.getBirthDateElement().getValueAsString());
}
assertThat(dates, hasItems(
"1980-01-01",
"1980-01-09"
));
assertFalse(map.isLoadSynchronous());
assertNull(map.getLoadSynchronousUpTo());
}
}
/** /**
* #222 * #222
*/ */
@ -2194,16 +2229,16 @@ public class FhirResourceDaoR4SearchNoFtTest extends BaseJpaR4Test {
List<String> queries = CaptureQueriesListener List<String> queries = CaptureQueriesListener
.getLastNQueries() .getLastNQueries()
.stream() .stream()
.filter(t->t.getThreadName().equals("main")) .filter(t -> t.getThreadName().equals("main"))
.filter(t -> t.getSql(false, false).toLowerCase().contains("select")) .filter(t -> t.getSql(false, false).toLowerCase().contains("select"))
.filter(t -> t.getSql(false, false).toLowerCase().contains("token")) .filter(t -> t.getSql(false, false).toLowerCase().contains("token"))
.map(t-> t.getSql(true, true)) .map(t -> t.getSql(true, true))
.collect(Collectors.toList()); .collect(Collectors.toList());
ourLog.info("Queries:\n {}", queries.stream().findFirst()); ourLog.info("Queries:\n {}", queries.stream().findFirst());
String searchQuery = queries.get(0); String searchQuery = queries.get(0);
assertEquals(searchQuery,3, StringUtils.countMatches(searchQuery.toUpperCase(), "HFJ_SPIDX_TOKEN")); assertEquals(searchQuery, 3, StringUtils.countMatches(searchQuery.toUpperCase(), "HFJ_SPIDX_TOKEN"));
assertEquals(searchQuery, 5, StringUtils.countMatches(searchQuery.toUpperCase(), "LEFT OUTER JOIN")); assertEquals(searchQuery, 5, StringUtils.countMatches(searchQuery.toUpperCase(), "LEFT OUTER JOIN"));
} }

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@ -339,6 +339,11 @@
of unneccesary joins were introduced to the generated SQL query, harming of unneccesary joins were introduced to the generated SQL query, harming
performance. This has been fixed. performance. This has been fixed.
</action> </action>
<action type="fix">
A serialization error when performing some searches in the JPA server
using data parameters has been fixed. Thanks to GitHub user
@PickOneFish for reporting!
</action>
</release> </release>
<release version="3.6.0" date="2018-11-12" description="Food"> <release version="3.6.0" date="2018-11-12" description="Food">
<action type="add"> <action type="add">